lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 666666666666 111 1111 333333333333333333333 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 222222 1 1111 111 111 1 1111 1 11 44444 1111 222222 11 11 444444444444444 777777777777777 111 1 1 1 6666666 11111111111 5555555555 11111 222222222222222222222222 1 22 111 11111 222222222222222 11 11 1111 55555 1 2222 1 11 111 2 1 111 222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11 11111 1 1 1 1 11 1 11 1 1 1 88888888888888 2222222 1 11 11 7777777777777777777777777777 111 22222 33333333 2 1111111111 2222 1 1111 55555555555555555555555555 1 111 111 3333333 111 111111 3333333333333 111 4444444444444 1 1 111 11 22 1111 11 111
lowQualScore : 666666666666 666 000 5 1 5 66 1 2222 111111111111111111111 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 111 99 3 6 888888 666 5 2 99 6 6 3 6666 111 888 99 6 8 8 8 8 0 3333 0 0 11 0 11 55555 88 8 7777 8 3 333333 99 8 8 44 8 8 2 111111111111111 333333333333333 6 99 6 888 6 6 77 3 2 1 1 3 9999 6 3333333 6 55555555555 2 1 44 6 6666666666 5 33333 5 777777777777777777777777 1 77 5 5 11 444 0 88 5 77777 888888888888888 88 6 11 11 7777 0 00000 0 5 8 1111 6 0 6 33 000 1 2 0 777 8 8 33 8 777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 6 33 5 8 11 3 5 55555 8 8 8 1 2 8 8 4 6 0 33 88 0 33 0 0 4 8 2 8 8 22222222222222 88 0000000 3 3 8 7 3 44 88 0 66 6666666666666666666666666666 777 33333 33333333 5 0 5555555555 1111 5 9999 00000000000000000000000000 0 111 777 3 2222222 777 555555 6 6666666666666 777 2222222222222 3 0 2 8 8 8 444 8 8 11 22 3333 8 11 8 8 8 6 5 5 1 7 111 3 6 6 888 6 6
lowQualScore : ............ ... ... . . . .. . .... ..................... . ..................................................................................................................... . ... .. . . ...... ... . . .. . . . .... ... ... .. . . . . . . .... . . .. . .. ..... .. . .... . . ...... .. . . .. . . . ............... ............... . .. . ... . . .. . . . . . .... . ....... . ........... . . .. . .......... . ..... . ........................ . .. . . .. ... . .. . ..... ............... .. . .. .. .... . ..... . . . .... . . . .. ... . . . ... . . .. . ................................................................................. . . .. . . .. . . ..... . . . . . . . . . . .. .. . .. . . . . . . . .............. .. ....... . . . . . .. .. . .. ............................ ... ..... ........ . . .......... .... . .... .......................... . ... ... . ....... ... ...... . ............. ... ............. . . . . . . ... . . .. .. .... . .. . . . . . . . . ... . . . ... . .
lowQualScore : 777777777777 111 000 0 7 0 99 1 1111 111111111111111111111 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 777 22 5 7 222222 000 7 5 22 7 7 3 0000 777 333 22 0 0 0 0 0 8 0000 8 4 44 8 00 66666 00 0 0000 0 2 000000 00 0 0 00 0 0 5 333333333333333 000000000000000 7 22 7 333 7 7 33 3 0 8 0 2 3333 7 5555555 7 55555555555 5 8 55 7 8888888888 7 00000 7 777777777777777777777777 4 11 7 7 88 000 8 88 0 88888 222222222222222 88 0 00 00 0000 8 00000 8 0 0 2222 0 0 0 88 222 2 5 0 555 0 0 88 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 33 8 0 00 2 8 00000 0 0 0 2 8 0 0 6 0 8 33 88 0 88 0 0 0 0 8 0 0 66666666666666 88 0000000 8 8 0 0 2 44 00 8 88 8888888888888888888888888888 555 88888 55555555 0 0 8888888888 2222 5 8888 88888888888888888888888888 0 000 555 2 5555555 555 888888 0 2222222222222 555 0000000000000 8 0 2 0 0 0 000 0 0 00 00 0000 0 00 0 0 0 7 0 0 9 1 777 3 7 7 777 7 7
consensus : GTGTTTCAT-----AATATA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT--ACCATACCTTT----TACA-----------CA--------CACCATAT-----A---T------------------CA-------------------------TT-------------------------TTA--------------------------T-----G-TGA---AAAA--GTTCGG-GAAA--TT--ATTG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-TGA-TG-TCACAGTTT---GAA---GCT--TTTC-GAAATGGATT-T-AACC-GAT-CAAC--A-AAGGNTGAAATTGTAAAACAGTACT--CTA--T-CTACCAA-TAT----A-AATCA------TCAT-AAA-A-TC-AT-TCA-GAGG------TA--AA--TGAAAGAA---A-AAT-ATGCT-AAAGGAGAAAC-TTAT--CAG-GAG--GTTA-GTA-AT-AAAGTTT-GAGAAGACAAGCAGGGNCAGTATG-T-GA-GAGAAG---ACATGGCATCC-CGGGAAGA----TC-A-A-AGACTTCAANAACCG-ATG-AA-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATT-T-C-GCCCTAA---CTTGCA-AAGAAAA--T--ATGGCGA-TCT-ACA-GA-CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGA---------------------AGAGT---AAGGCTT----------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAACGATAG-A-G-TAT-A-CAGCCCCAAACCACAGT-CAG-ACACTGAA-CGAACTCAAAA-GGAA-C--AT-C-AANTTT-TATAT-TTAGGAGTGTC-TTATTAAA----AAAAATGTGTGA-TAATGCGAAA--AATATCC-AAAACANCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-A-TTTTAA----AGAACA---TTTA-C---TGT-A-A----AGTGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAATG---ACG---TNATTAAGAA---A-TTTGAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGNTTCA-G-T-A--TTAT---TCAC-A----A------CAAATCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATA--AAAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AATGT-AA-CATAT-A-TTAT-GAAACAC-CCTGTA
Reference ( gi|4 ) : GTGTTTCAT-----A------TGTT-A-CATTTTT---AGCTTTAAATATCTTTGTCA-CTT--ACCATACTTTT----TACA-----------CA--------CACCAGAT-----A---T------------------CA-------------------------TT-------------------------TTA--------------------------T-----G-TGA---AAAA--GTTTGG-GAAA--GT--ATTG-C-AT-CATTAGCCTTAATTTTAACATG--A-AT-GA-TGA-TA-TCACAGTTT---GAA---GCT--TTTT-GAAATGGATT-T-AACT-GAT-CAAC--A-AAGGATGAAATTGTAAAACAGTACT--CTA--TACTACTAA-TAT----A-AATCA------TCA--AAA-A-TT-AT-TCA-GAGG------TA--AA--CGAAAGAATTTA-AAT-ATGCT-AAAGGAGAAAC-TTAT--CAG-GAG--ATTA-GTA-AC-AAAGTTT-GAGAAGACATGCAGGGACATTATG-T-GA-GAGAAG---AG--GGCATCC-CGGGAAGA----TC-A-A-AGACTTCAAAAATCG-ATG-CA-TTTTGTCTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----C-TGAGAA-CCT-AATT-T-C-TCCCTAA---CTTGCA-AAGAAAA--T--ATGGCGA-TCA-ACA-GA-TTG-TTTGGCTT--CA--ACAGG----ATGGAGCT----TACCTCACACTTAATTC-TGC----TTTTTTGC-ACTGATT--AGAGAAAACAT-TTGTGGACA-GATTAA---TATCG-TA-CAAAAC-ACGA---------------------AGAGT---AAG--------------------------CC---------------------TTTGGA-C-TCTTTTC-TATT-AGGA--TTCTTAAAAGATAG-A-G-TAT-A-CAGCCCAAAACCACGGT-CAG-ACGCTGAA-CGAACTCAAAA-CGAA-C--AT-C-AATTTT-TACAT-TTAGGAGTGTC-TTATTAAAAAATAAAAATGTGTGA-TAATGCTAAA--AATATCC-AAATCAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-A-TTT-------AAAACA---TTTA-C---TGT-A-A----AATGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAATA---ACG---TTATCAAGAA---A-TTTTAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAGTAAGTATCA-G-C-A--TTAT---TCAC-A----A------CAATTCTA-ATAGATA-C-AT-GTAG---TTATA-TG-ATA--AAAAC--TTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AA-CATAT-A-TTAT-GAAACAC-CCTGTA
gi|1 : GTGTTTCAT-----AATGATATGTT-A-CATTTCT---AACTTTAAATATCTTGTTCA-CCT--ACCATACATTT----TACA-----------CA--------CACCATAT-----A---TATTTTTAAACACCAAATCCAATAT---------------------TT-------------------------TTAGTTTT---------------------T-----G-TGA---AAAA--GTTCGG-GAAATTAT--ATTG-CTAT-CATTAGCCTTA-TTTTAACATGTAA-AT-GA-TGAATG-TCACAGTTT---GAA---ACT--TTTTTGAAATGGATT-T-AACT-GATTCAAC--A-AAAGATGAAATTCTATAACAGTACT--CTA----CTACCAA-TAT----AGAATCA------TCA--AAA-AATC-AT-TCAAGAGG------TAG-AA--TGAAAGAA-----AAT-ATGCC-TAAGGAGAAAC-TTAT--CAG-GAG---TTA-GTA-AT-AAAGTTTTGAGAA-ACAAGCAGGGACAGTATGGT-GA-GAGAAG---ACATGGCATCC-CGGGAAGA----TC-ACC-AGACGTCAATAACCG-ATG-AC-TTTTG-ATTTATCAAATG-A---GTG-AC---TCC-C--ACC-TTA-----CGTGAGAA-CCTAAATT-T-CGGCCCTAA---C-TGCATAATAAAA--TCAATGGCGA-TCCTACA-GAGCTG--TTGGTTT--CA--ACAGG----ATGGAGGCGCGACATCTCACACTTCAATC-TACTTTTTTTTTTAC-ACTGGTTTGAGAGAAAAACT-TTTTGAACATGATTAATTTTATCG-TAGCAGAACAACGA---------------------GAAGT---AGGGCTTCGGCATTCACCAGAATCTAAATCC---------------------TTTGGATC-TC-TCTC-TAGTAAGGA--TT-TTAAAAGATAA-AGG-TATAA-CAGCCCCAAACCACAGT-CAG-ACACTGAAGCAAACTCAAAT-GAAA-C--ATGCAAATTTT-TATAT-TTAAGAGTGTCTTTATTAA-----AGAAATGTGTGA-TCATGCGAAA--TATTCCC-AAAAGATCTTCCTCTTGGT--TTGGAGGATGAC-TCGTAA-----GTC-A-TTTTAA----AAAACA---TTTA-A---CGT-GTA----AGTGTGAACGTTATGAGAT-TGG-G-A--TAT----GAT-AAAATG---ACG---TAATTAAGAA---A-TTTGATAAAATTTCAGTTTGTT-TGAT---TCAA-------ATGTCCG---CTTAAGATT-T-TGAAAATAGGT-TCA-GTT-ATTTTAT---TTACTATATCA------TAAGTCTATATGGATATC-AT-GTAGTGTTTATATTG-ATA--AAAACGTTTTTTTC--TGTTAATCTAGT--T-CCCTGTG-TTTGT-TCAATTTATAGATTCAAATTAATGTAAA-CATAT-ATTTATGGAAACACGCCTG
gi|6 : agGTGTTTCATGATATA------TGTTTA-CATTTTG---AACTTTAA-TATCTTTGTCA-CTTTGACCATAATATT----TACA-----------CA--------CACTATAT-----A---T------------------CA-------------------------TT-------------------------TTAACACCAAATCCAACATTTT-------T-----A-TGGGGGAAAA--GTTTGA-GAAA--TT--AT-G-C-AT-CATT-GCCCTAATTTTAACATG--A-ATTGA-TGA-TG-TCACATTTTTTGGAA---GCT--TTTTCGAAATGACTT-T-AACC-GAT-CAAC--A-A-GGATGAAATTGTAAA-CAGTACT--CTA----CTACCAACTAT----A-AAT--------TCAT-AAA-A-TC-AT-TCA-GAGG------TA--A---TGAAAGAA---A-AAT-A-GCT-AAAGGAGAAACCTTATTTCAG-GAGGTATTA-GTA-ATTACAGTTT-GAGAAGACAAGTAGGGACAGTATA-TCGATGAGAAG---ACATGTCATCC-CGGGAAGA----TC-A-A-AGACTTCAAAAACCG-GCG-GACTTTTGACTTT-TC-AATG-A---GTG-AC---T-T-CCAA-CGTTA-----T-TAAGAA-CCT-AATT-T-C-GTCCTAA---CTTGTA-AAGAAAAACT--ATGGC-A-TCT-ACA-AA-CTG-TTTAGTTT--CA--ATAGG----A-GGAGCA----CACCTCACACTTCATTCGGGC----TTTTTTACAACTGGTT--AGAGAAAACAT-TT-T-GACA-GATTGA---TATCA-TA-CAGAAC-ACGATGGTAAGGCTTCCGCATTCACAGATTCTAAAA--------------------------CC---------------------TTTTGA-C-TCTTTGCTTTTT-AGGA--TCTTAAAAAGAT-T-A-G-TAT-A-CAGCCC-AAACCACAGTACAG-ACACTGAACCGAACT
gi|9 : ggGTGTTTCAT-----AAAATA-TGTT-A-CATTTTT---AGCTTTAAATATCTTTGACA-CTT--ACTACACCTTT----TACA-----------CA--------CACCATAT-----A---T------------------CA-------------------------TT-------------------------TTA--------------------------
gi|8 : GTGTTTCAT-----AATATAGCGTT-AGCATCTCTTAAAACTTTAAATATCTTTGTTAGCTT--ACCATACCTTTTATATACATCATAATATGCCATTTTAAAGCACCAAGTCCTACAGTTT------------------TA-------------------------TT-------------------------TTT--------------------------T-----G-TGA---AAAAATGTTCGG-GAAA--ATCTATTGAT-GT-CATTAAGCTTAATTGTAACATA--A-AC-GACTGA-TAGTCACAATTT---GAATGGGCCTGTTTC-AAAATGGATTAT-AAAC-CAT-CAACCAG-AAGGCTGACGTTAAAAAATCCTATTAACCAATTGCCA-TAA-TATATCCA-AATCAGGCGCCTAA--AAATA-TC-ATCTCA-GAGGATCATCTA--AA--GGAAAaacaccaaatcgaacaatcttatttttattaaaaagttcgggaaatggaaaatattcgttcggtttggtttttcattttatgacttgatgt
gi|15 : tgGTGTTTCAT-----AATATA-TGTT-A-CATTTTT---AACATTGAATATCTTTGTTA-CTT--ACCATat
gi|3 : ggTTAT-----A------TGAT-T-CATTTTA---AACTTTGATT-TCTTTGTCA-CTT---TCATACTTTT----TACA-----------CA--------TACCTTAT-----A---T------------------CATATTTAACACACCCAAATCCAAACATT-------------------------TTA--------------------------TCTTTAG-TGA---AAA---GTTCGGCGAAA-------TTG-C-ATTCATTAGCCTTAATTTTAA-ATG--ACAT-GATTGA--G-TCTCAGTTT---GAA---GCT--TTTT-GAAATGGATC-TGAACTCGAT-C-AC--A-AAGG-TG-CATTGTAAAACAGTACT--CT---T-CTACCAA-TAT----A-CATTA------TCATTCAA-A-TCAAT-TCA-GA-G------TAACAA--TGAAAGAA---A-AATAATGCTAAAAGGAGAAAC-TTAT--CAG-GAG--GTTA-GTA-AT-AAAG-TT-GAGAAGACAAGCAGGGCCAGTATT-G-GA-GAGAAGAC-AT--GGCATCC-CGGGAAGA----TTAA-A-AGACTT--AGAACCGCCTGACG-TTTTGACTTTATC-AATG-A---GTG-AC---T-C-C--ATT-TTATTTATT-TGAGAATCCT-AATT-T-C--GCCTAA---CTTGC--AAGAAAA--T--ATGGCGACTCT-ATACAA-CTGTTTTGGTTT--CAGCACAGG----ATGGAGCTACA-TACCTTGC-----ATTC-TGC----ATTTTTAC-ACTGGTT--AGAAAAAACATCTTTTGGACA-GATTAA---TATCGTTA-C-AAAC-ACGA---------------------AGAGT---TAG--------------------------
gi|7 : atgtttcataatacaTTAT-----A------TGGT-A-CATTTTT---ATCTTTAAATATCTTTGTTA-TGT--ACCATACTTTT----TACA-----------CA--------CACCATAT-----A---T------------------CA-------------------------TTTTAAACATCAAATCCAACATTTTTTTTT--------------------------T-----GCTGA---AATA--GTTCTG-GAAA--TT--ATTG-C-AT-CATTAAGCTTAATTGTAACTTA--A-AT-GA-CAA-TG-TCACAATTT---GAAT--GCC--TTTC-GAAATGGATT-T-AACT-GAT-CAAC--AGAAGGCTGAAACTGTAAGATAGTACT--CTA---A-TAGCAA-TAT----A-AATCA------CCA--ATA-A-TC-AC-T-----------------------AAAGAA---------------AAAG------C-TCAT--CAG-GAG--GTTC-GTA-AC-AAAGTTT-GAGAAGACGTGCAGGGGCAGTCTG-T-GA-TAGAAGAC-AT--GGAAACC-CAGGAATA----CC-A-A-GGACTTCAAAAACAG-ATG--A-------CTTTATC-AATGAA---TTG-A--------C--A-C-TTA-----T-TGAGAA-CCT-AATT-T-C-GCCCTAgcatccacatcttaccccgggcattcaccaagatcttcaatcctttcgacctctttttaataggaattccttaaatgatagggtatatcagcccaacacacagtcaacacctgaacgaaaaaaagggatcatcaaattttatatttaggagtgtcttattaaatgtgataatgcgataaaattcaaaaaaatcgtctactcttgttggaagaagacgtttaccggtgtccatttagaacatttaactgttaagatgtgacgttatgagattggaatatgataaaatgacgtaattaagaaatttttataaatttcagttgttgattcaatgtccgcttaaatttgaaaataaggttcagtattattcacaacaactctaatggatacatgtagttatatgatacaaacttttttttctttatctagttccccgtgtttgttcattatagattca
gi|11 : ggtgtttcataataaCTTTGTTA-CTT--ACCATACCTTT----TACA-----------TA--------CACCTTAT-----A---T------------------CA-------------------------TT-------------------------CTAAACATAAAATCCCACATTTTTATTTTT-----G-TGA---AAAA--GTTCAG-GAAA--TT--ATTG-T-GT-CATTA
gi|16 : --ATTG-C-AT-CATTAGCCTTAATTTTAAGATG--A-AT-GA-TGA-TG-TCACAGTTT---GAA---GCT--TTTa
gi|5 : AGG------TA--AAATTGAAAGAAAATATACT-ATTCT-AAAGGAGAAAC-TTGT--CAG-GAG--GTTA-GTA-AT-AAAGTAT-GGGAAGACAGGCAGGGACAGTATG-T-GA-GAAAAG---ACATGGCATCC-CGGGAAGA----TT-A-C-AGACTTCAAAAACTG-ATG-AC-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-T---------------------ATT-T-C-GCCCTAA---CTTGCA-GAGAAAA--T--ATGGCAA-TCT-ACA-GA-CTG-TTTGGTTT--CA--ACGGG----ATAGAGCTA---CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAAC-T-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGA---------------------AGAGT---AAGGCTT----------------------CCGCATTCATCAGATCTAAATCATTTGGA-C-TCTTTTC-TATT-AGAA--CTCGTAAACAATAG-G-G-TAT-A-GAGCCCCAAACCACAGT-CAG-ACACTGAA-CGAACTAAAAA-AAAA-C--AT-C-AAATTT-TATAT-TTAGGAGTGTC-TTATTTAAA---AAAAATATGTGA-TAATGCAAAA--AATATCC-AAAACGTCTTTCTC---TTG-TTGGAAGA-GAC----A-A-----GTC-A-TTTTAAAAAAAAAACA---TTTA-C---TGT-A-A----ATTGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAATG---ACG---TT----------------------ATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-T-A--TTAT---TCAC-A----A------CAAATCTA-ATGAACA-C-AT-GTAG---TTATA-TG-ATA--AAAAC--TTTTTTC--T-TC-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AA-CATAT-A-TTAT-GAAACAC-CCTGTA
gi|10 : -TCAT--CAGCGAG--GTTAAGTAGAC-AAAATTTTGAGAAGACAGGGAGCGTCATT-CC-T-GA-TAAAAGTACAT--GACAACCGCGGGGACAGCAGCC-A-ACAGGCTTACACAATAA-ATA--A-------CTTTATC-AGTGAA---GTGAAC---T-CGC--A-T-TTA-----T-TGAAAA-CC--AATT-T-
gi|2 : gaggaagggcgATC-AATGAATCAGTG-ACAAAT-C-C--A-C-T-A-----T-TGAGAAACCT-AATTGTGC-TCTCTTAGATCTTACA-AA----------------------AC-----TTG-TTTAGTTTATCA--ACAGAGGGAATAGAGCTA---CACCTCACACTTCATTC-TGg
gi|14 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaG-TA-CAGAAC-ACGA---------------------AGAGT---AAGGCTTCCGCGTTCACCAGATCTAAAA-CC---------------------TTTGGA-C-TCTCTTC-TAggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : ---AAT--------------------------CC---------------------TTTCGA-CCTCTTTT--TAAT-AGGAATTCCTTAAATGATAG-G-G-TAT-ATCAGCCCAACAC-ACAGT-CAACAC-CTGAA-CGAAA--AAAA-GGGATC--AT-C-AAATTT-TATAT-TTAGGAGTGTC-TTATTAAA-----------TGTGA-TAATGCGATA--AA-ATTC-AAAAAAATCGTCTACTCTTG-TTGGAAGAAGACGT-TT-ACCGGTGTCCA-TTT-------AGAACA---TTTAAC---TGTTA-A----GATGTG-ACGTTATGAGAT-T-G-GAA--TAT----GAT-AAAATG---ACG---TAATTAAGAA---ATTTTTAT-AAATTTCAG-TTG-T-TGAT---TC-A-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-T-A--TTAT---TCAC-A----A------CAACTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATA--CAAACTTTTTTTTC--T-TT-ATCTAGT--TCCCC-GTG-TTTGT-TC-A-TTATAGATTCA
gi|2 : atgtttcataatacattatatgattcattttaaactttgatttctttgtcactttcatactttttacacataccttatatcatatttaacacacccaaatccaaacattttatctttagtgaaaagttcggcgaaattgcattcattagccttaattttaaatgacatgattgagtctcagtttgaagctttttgaaatggatctgaactcgatcacaaaggtgcattgtaaaacagtactcttctaccaatatacattatcattcaaatcaattcagagtaacaatgaaagaaaaataatgctaaaaggagaaacttatcaggaggttagtaataaagttgagaagacaagcagggccagtattggagagaagacatggcatcccgggaagattaaaagacttagaaccgcctgacgttttgactttatcaatgagtgactccattttatttatttgagaatcctaatttcgcctaacttgcaagaaaatatggcgactctatacaactgttttggtttcagcacaggatggagctacataccttgcattctgcatttttacactggttagaaaaaacatcttttggacagattaatatcgttacaaacacgaagagttaggcatccacatcttaccccgggcattcaccaagatcttcGA-C-TCTTTC---AGC-ATGA--TTCTTAAACGATGGTA-GTTAT-A-TAGCCCCAAAC
gi|2 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtCCAAGACCAC-----------TTGAA-CGA-CTCAAAAGCGAA-CTCAT-C-AATTTTATA-ATATTAGGAGTGTC-TTATT------TAAAAATGTGTGAATAATGCGAAATTAACA--C-AAAACAGCTTTCTCTGGTTGTTTGGAAG--GAT-TGGT-A------TC-ATTTT-------AGAACCGTTTTTA-CTCGTGT-T-ATTCTAGTATGTACGACTCGAGATGT-GAG-AATTATCATAGGTACAAATATTGACGTAATTCTCAAAGACCCA-TTTGAC-TAACATTAG-TTA-TATGATCTGTCAAGATATCGGTATCCGGTCTTTACA--TGTGTGAAAATAAGT-TCATG-CTC--TCATATCTCAC-A----ATAGGGCCAAATCTA-ATAGATA-CGATAGTAG---TTATA-TGCATAACAAAAT--CTCTTGCGTC-TC-ATCTGATTAT-CCC-ACGTTTTGTGTCAA-tcagtgcgaccactctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|13 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgT-TATAT-TTAGGAGTATC-TTAGTAAA-----------TGTGA--AAT---------ATATCCAAAAACAGCTTCCTCTTGTT--T--GAAGA-atccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|12 : ATA-C-AT-ATAG---TTACA-GG-ATA--AAAAC--TATTTTA--T-TT-ATCTATT--T-TCT-GTG-TTTGC-TCAA-T--TAGATTCA
gi|15 : TAT-TCAA-T-----GTTAAA---AATGT-AA-CATAT-A-TTAT-GAAACAC-CC
gi|6 : A-TTAAAG-TTCAA---AATGT-AAACATAT-A-TCAT-GAAACAC-CCtctttgttacttaccat
gi|1 : -TTAAAG-TTAGA---AATGT-AA-CATATCA-TTAT-GAAACAC-atctttgtcactttgaccataatatttacacacactatatatcattttaacaccaaatccaacatttttatgggggaaaagtttgagaaattatgcatcattgccctaattttaacatgaattgatgatgtcacattttttggaagctttttcgaaatgactttaaccgatcaacaaggatgaaattgtaaacagtactctactaccaactataaattcataaaatcattcagaggtaatgaaagaaaaatagctaaaggagaaaccttatttcaggaggtattagtaattacagtttgagaagacaagtagggacagtatatcgatgagaagacatgtcatcccgggaagatcaaagacttcaaaaaccggcggacttttgacttttcaatgagtgacttccaacgttattaagaacctaatttcgtcctaacttgtaaagaaaaactatggcatctacaaactgtttagtttcaataggaggagcacacctcacacttcattcgggcttttttacaactggttagagaaaacattttgacagattgatatcatacagaacacgatggtaaggcttccgcattcacagattctaaaaccttttgactctttgctttttaggatcttaaaaagattagtatacagcccaaaccacagtacagacactgaaccgaact
gi|9 : aAA---AATGT-AA-CATAT-T-TTAT-GAAACAC-atatcttgttcacctaccatacattttacacacaccatatatatttttaaacaccaaatccaatatttttagtttttgtgaaaaagttcgggaaattatattgctatcattagccttattttaacatgtaaatgatgaatgtcacagtttgaaacttttttgaaatggatttaactgattcaacaaaagatgaaattctataacagtactctactaccaatatagaatcatcaaaaaatcattcaagaggtagaatgaaagaaaatatgcctaaggagaaacttatcaggagttagtaataaagttttgagaaacaagcagggacagtatggtgagagaagacatggcatcccgggaagatcaccagacgtcaataaccgatgacttttgatttatcaaatgagtgactcccaccttacgtgagaacctaaatttcggccctaactgcataataaaatcaatggcgatcctacagagctgttggtttcaacaggatggaggcgcgacatctcacacttcaatctacttttttttttacactggtttgagagaaaaactttttgaacatgattaattttatcgtagcagaacaacgagaagtagggcttcggcattcaccagaatctaaatcctttggatctctctctagtaaggattttaaaagataaaggtataacagccccaaaccacagtcagacactgaagcaaactcaaatgaaacatgcaaatttttatatttaagagtgtctttattaaagaaatgtgtgatcatgcgaaatattcccaaaagatcttcctcttggtttggaggatgactcgtaagtcattttaaaaaacatttaacgtgtaagtgtgaacgttatgagattgggatatgataaaatgacgtaattaagaaatttgataaaatttcagtttgtttgattcaaatgtccgcttaagattttgaaaataggttcagttattttatttactatatcataagtctatatggatatcatgtagtgtttatattgataaaaacgtttttttctgttaatctagttccctgtgtttgttcaatttatagattcaaattaatgtaaacatatatttatggaaacacgcctg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AATGGAAAACATTCGCCCGGTTTGGTTTTACATTTTATGACGTTGA
Unaligned ( gi|18 ): ACTAAAATATCTTTTACATATTGTATGCAGTTTCTTTGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 22222222222 222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 111 111 22 1111 444444444444444444444444444 111 111 3333333333333333333333333333333333 1111111111 11111 1 11111111 2222222222 11 1111111111 111 1 1111111 1 111 11111 11 1111 333333 1111 11 111 7777777777777777777777777777777777777777777777777777777777777777777 11 1 11 222222 11 1 444444444444 4444444 111 11111 2222222 1 11 1111 1 111 1111 11111 111 2222222 111 11 11111 111 33333333333 111 22 222 1 1 1 1
lowQualScore : 5 33333 5 5 5 888 0 4 77777777777 4 000000000 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 77 5 77 777 5 77 5 0 77 5 5 5 5 999 000 555 77 000 6 6 6 6 9999 7 1 5 5 44 77 5 2222 222222222222222222222222222 000 5 555 77 5 2222222222222222222222222222222222 888 8888888888 5 5 5 66 22222 5 66 0 5 5 66 5 5 5 1 88888888 1111111111 5 1 22 5 5 5 5 66 5 7777777777 5 777 66 0 2 1 66 5 2 111 33 2 5 9 888 5 888 555 66 0 5 3 5555555 0 55 5 000 33333 1 6 6 6 6 55 6 99 99 4444 333333 6 7777 8 11 5 8 0 8 444 6 6 1 6 0000000000000000000000000000000000000000000000000000000000000000000 5 5 00 1 6 99 1 5 1 999 6 6 6 2 6 6 5 5 5 5 3 8 8 11 8 8 8 6 6 6 6 7 333333 1 6 1 99 1 1 6 1 1 33 3 000000000000 8 3333333 444 77777 0000000 8 6 8 8 8 8 11 7777 0 444 11 7777 55555 5 99 8 8 8 444 0 6666666 444 11 8 8 0 8 8 66666 444 8 11111111111 4 8 6 6 6 111 6 6 6 00 3 9999 6 99 6 6 6 6 6 0 333 1 3 3 3 3
lowQualScore : . ..... . . . ... . . ........... . ......... . ................................................................................................................................................... . . .. . .. ... . .. . . .. . . . . ... ... ... .. ... . . . . .... . . . . .. .. . .... ........................... ... . ... .. . .................................. ... .......... . . . .. ..... . .. . . . .. . . . . ........ .......... . . .. . . . . .. . .......... . ... .. . . . .. . . ... .. . . . ... . ... ... .. . . . ....... . .. . ... ..... . . . . . .. . .. .. .... ...... . .... . .. . . . . ... . . . . ................................................................... . . .. . . .. . . . ... . . . . . . . . . . . . . .. . . . . . . . . ...... . . . .. . . . . . .. . ............ . ....... ... ..... ....... . . . . . . .. .... . ... .. .... ..... . .. . . . ... . ....... ... .. . . . . . ..... ... . ........... . . . . . ... . . . .. . .... . .. . . . . . . ... . . . . .
lowQualScore : 0 11111 0 0 0 888 4 4 22222222222 4 000000000 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 99 7 99 000 0 00 0 7 99 7 7 7 7 444 000 777 99 444 7 7 7 7 3333 5 7 7 7 77 99 7 1111 333333333333333333333333333 000 7 777 11 0 0000000000000000000000000000000000 888 3333333333 7 7 0 99 55555 0 99 0 0 0 99 0 0 0 2 11111111 9999999999 0 0 66 0 0 0 0 99 0 9999999999 0 000 99 1 5 0 99 0 2 999 22 5 0 4 888 0 888 111 99 0 0 2 2222222 0 11 7 888 33333 0 7 7 7 7 88 7 22 22 2222 777777 7 0000 0 00 6 0 8 0 000 7 7 0 7 9999999999999999999999999999999999999999999999999999999999999999999 7 7 00 0 7 22 0 2 7 333 7 7 7 5 7 7 7 7 7 7 3 0 0 00 0 0 8 7 7 7 7 3 000000 0 7 0 22 7 7 7 0 7 33 3 000000000000 0 4444444 000 00000 4444444 0 0 0 0 0 0 00 0000 6 000 88 0000 44444 0 00 0 0 0 000 8 0000000 000 00 0 0 8 8 0 88888 000 0 00000000000 0 0 7 7 7 777 7 7 7 77 2 3333 7 22 7 7 7 7 7 8 333 0 3 3 3 3
consensus : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A--A--T--GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGATAG-A-G-TAT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAA----AAAAATGTGTG-ATAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTTT----AAAAAACA---TTTA-C---TGTN-A----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTAATT----AAGA--AA-TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
Reference ( family-244 ) : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGNTGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A--A--T--GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GNCAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAACGATAG-A-G-TAT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAA----AAAAATGTGTG-ATAATGCGAAA--AATATCC-AAAACANCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTTT----AAAGAACA---TTTA-C---TGTA-A----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTNATT----AAGA--AA-TTTGAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGNTTCA-G-TA--TTAT---TCAC-A----A------CAAATCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AATGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|1 : GTGTTTCATAATGA-----TA-TGTT-A-CATTTCT---AACTTTAAATATCTTGTTCA-CCT-----------AC-CATACATT---------TTA-CACA-----------------------CACCA-----TATAT---A---TTTTTAAACACCAAATCCAATAT---------------------T---------------------TTTAGTTTT---------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTATATTG-CTAT-CATTAGCCTTA-TTTTAACATGTAA-AT-GA-T-GAAT-GTCACAGTTT---GAA---ACT--TTT-TTGAAATGGATT-T-AAC-TGATTCAAC--A-AAAGATGAAATTCTATAACAG-TA-CTCTA--CTA--CCAA-T----ATAGA---A---T-C---ATCA------A-AAA---ATCA-T---TCAAGAGG-T----AGA--A--T--GAAA---------------GAA---AA-----TA-T-GC-CTAA-GGAGAAAC-TTAT--CA-----G-GA-GT--TA-GTA-AT-AA--AGTTTT-GAGAA-A-CAAG--------CAG----------G-GACAGTATGGT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-ACC-A--GACGTCAATA--ACCG-ATGA-C-TTTTGA-TTTATCAAATG-A---GTG-AC---TCC-C--ACC-TTA-----CGTGAGAA-CCTAAATTTCGGCCCTAAC-TGCATAATAAAA--TCAATGGCGA-TCCT-ACA-GAG-CTG--TTGGTTT--CA--ACAGG----ATGGAGGCGCGACATCTCACACTTCAATC-TACTTTTTTTTTTAC-ACTGGTTTGAGAGAAAAACT-TTTTGAACATGATTAATTTTATCG-TAGCAGAACAACGAGAAGTAGGGCTTCGGCATTCACCAGAATCTAAAT---------------------CC---------------------TTTGGATC-TC-TCTC-TAGTAAGGA--TT-TTAAAAGATAA-AGG-TATAA-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAAGCAAACTCAAATG-AAA-C--ATGCAAATTTTTATA-T-TTAAGAGTGTCTTTA-TT-AA----AGAAATGTGTG-ATCATGCGAAA--TATTCCC-AAAAGATCTTCCTCTTGGT--TTGGAGGATGAC-TCGTAA-----GTC-ATTTT----AAAAAACA---TTTA-A---CGTGTA----AG-TGTGAACGTTATGAGAT-TGG-G-A--TAT----GAT-AAAA---TGACGTAATT----AAGA--AA-TTTGATAAAATTTCAGTTTGTT-TGAT---TCAA-------ATGTCCG---CTTAAGATT-T-TGAAAAT-AGGTTCA-GTTATTTTAT---TTACTATATCA------TAAGTCTATATGGATATC-AT-GTAGTGTTTATATTG-ATAA-AAACGTTTTTTTC--TGTTAATCTAGT--T-CCCTGTG-TTTGT-TCAATTTATAGATTCAAATTAATGTAAACATATATTTATGGAAACACGCCTG
gi|10 : ag-TCAT--CA-----GCGAGGT--TAAGTAGAC-AA--AA-TTTTGAGAAGA-CAGG--------GAG----------C-GTCATTCC--T-GA-TAAA-AGTACATGACAAC--CGCGGGGACAGCAGC-----C-A-ACA--GGCTT--ACA----CA-ATAA-A-T---AACTTTATC-AGTGAA---GTGAAC---T-CGC--A-T-TTA-----T-TGAAAA-CC--AATTT
gi|11 : gaggaagggcgCTTTGTTA-CTT-----------AC-CATACCTT---------TTA-CATA-----------------------CACCT-----T--AT---A---T----------------CA-------------------------T---------------------TCTAAACATAAAATCCCACATTTTTATTTTT-----G-TGA-AAAA--GTTCAG-GAAA--TTAT--TG-T-GT-CATTAg
gi|12 : ATA-C-AT-ATAG---TTACA-GG-ATAA-AAAC-TATTTT-A--T-TT-ATCTATT--T-TCT-GTG-TTTGC-TCAA-T--TAGATTCAa
gi|13 : TTATA-T-TTAGGAGTATC-TTA-GTAAA-----------TGTG-A-AAT---------ATATCCAAAAACAGCTTCCTCTTGTT--T--GAAGA-
gi|14 : G-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------TCCGCGTTCACCAGATCTAAAACC---------------------TTTGGA-C-TCTCTTC-TA
gi|15 : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACATTGAATATCTTTGTTA-CTT-----------AC-CAT
gi|16 : ggAT--TG-C-AT-CATTAGCCTTAATTTTAAGATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-
gi|2 : AAAACAGATATCTCTA--ATAAGCCAA-T----ATA-A---AATATAC---ATCA------T-AAA---AGCA-TGTTTC--GACG-TTGTAA-A--A--TCCGAAAAGGCAGTATAGTGATGAA---AACA-A-TA-TAGCATAAG-GTAGAGAC-TTAT--CATCGACG-TAAGA--TATGTA-AC-AACAGG-CTT-GTGAGCATCGAGTTATCTCGCAGCTCGAGATGTGCGACAGTAT--T-GA-TAGATAG-A------ATCAAC-CGAGAACG----TACGCAC-A-A-ATAGAC--CAACATGAGTG-AAGA-A-TT--GA----ATC-AATGAATCAGTG-ACAAAT-C-C--A-C-T-A-----T-TGAGAAACCT-AATTGT-GCTCT--CTTA--------------------GA-T-CTTACA-AAACTTG-TTTAGTTTATCA--ACAGAGGGAATAGAGCTAC---ACCTCACACTTCATTC-TG
gi|2 : GA-C-TCTTTC---AGC-ATGA--TTCTTAAACGATGGTA-GTTAT-A-TAGCCCCAAAC-T-CAGT-GCGACC-AC-T-ggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|2 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtAGA-CCAC-TTGAA-CGA-CTCAAAAGCGAA-CTCAT-C-AA-TTTTATAATATTAGGAGTGTC-TTA-TT--T----AAAAATGTGTGAATAATGCGAAATTAACA--C-AAAACAGCTTTCTCTGGTTGTTTGGAAG--GAT-TGGT-A------TC-ATTTT------AGAACCGTTTTTA-CTCGTGTT-ATTCTAG-TATGTACGACTCGAGATGT-GAG-AATTATCATAGGTACAAATATTGACGTAATTCTCAAAGACCCA-TTTGAC-TAACATTAG-TTA-TATGATCTGTCAAGATATCGGTATCCGGTCTTTACA--TGTGTGAAAATAAG-TTCATGCTC--TCATATCTCAC-A----ATAGGGCCAAATCTA-ATAGATA-CGATAGTAG---TTATA-TGCATAACAAAA-TCTCTTGCGTC-TC-ATCTGATTAT-CCC-ACGTTTTGTGTCAA-ctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaTGTTTCATAAT-ACATTATA-TGAT-T-CATTTTA---AACTTTGATT-TCTTTGTCA-CTTTCATACTTTTTACACATACCTTATATCATATTTAACACA-----------------------C-CCA-----A--ATCCAA---A----------------CA-------------------------T---------------------TTTA--------------------------TCTTTAG-TGA-AAA---GTTCGGCGAAA--TT-----G-C-ATTCATTAGCCTTAATTTTAA-ATG--ACAT-GA-TTGA---GTCTCAGTTT---GAA---GCT--TTT-T-GAAATGGATC-TGAACTCGAT-CA-C--A-AAGG-TGCA-TTGTAAAACAG-TA-CTCT-T-CTA--CCAA-T----ATA-C---A---T-T---ATCA------TTCAA---ATCAAT---TCA-GAG--T----A-ACAA--T--GAAA---------------GAA---AA---A-TAAT-GC-TAAAAGGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TT--GAGAAGA-CAAG--------CAG----------G-GCCAGTAT-TG-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----TAA-A-A--GACTT--AGA--ACCGCCTGACG-TTTTGACTTTATC-AATG-A---GTG-AC---T-C-C--ATT-TTATTTATT-TGAGAATCCT-AATTTC-G-CCTAACTTGC--AAGAAAA--T--ATGGCGACT-CT-ATACAA--CTGTTTTGGTTT--CAGCACAGG----ATGGAGCTACA-TACCT-----TGCATTC-TGC----ATTTTTAC-ACTGGTT--AGAAAAAACATCTTTTGGACA-GATTAA---TATCGTTA-CA-AAC-ACGAAGAGTTAGGCA----------------------T---------------------CC---------------------atccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : a----------------------T---------------------CC---------------------TTTCGA-CCTCTTTT--TAAT-AGGAATTCCTTAAATGATAG-G-G-TAT-ATCAGCCC--AACACACAGT-CA-A-C-ACCT-GAA-CGAAA--AAAAG-GGATC--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTA-TTAAA-----------TGTG-ATAATGCGATA--AA-ATTC-AAAAAAATCGTCTACTCTTG-TTGGAAGAAGACGT-TT-ACCGGTGTCCATTT-------AGAACA---TTTAAC---TGTT-A----AGATGTG-ACGTTATGAGAT-T-G-GAA--TAT----GAT-AAAA---TGACGTAATT----AAGA--AATTTTTAT-AAATTTCAG-TTG-T-TGAT---TC-A-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAACTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAC-AAACTTTTTTTTC--T-TT-ATCTAGT--TCCCC-GTG-TTTGT-TC-A-TTATAGATTCAacatcttaccccgggcattcaccaagatcttcaatcctttcgacctctttttaataggaattccttaaatgatagggtatatcagcccaacacacagtcaacacctgaacgaaaaaaagggatcatcaaattttatatttaggagtgtcttattaaatgtgataatgcgataaaattcaaaaaaatcgtctactcttgttggaagaagacgtttaccggtgtccatttagaacatttaactgttaagatgtgacgttatgagattggaatatgataaaatgacgtaattaagaaatttttataaatttcagttgttgattcaatgtccgcttaaatttgaaaataaggttcagtattattcacaacaactctaatggatacatgtagttatatgatacaaacttttttttctttatctagttccccgtgtttgttcattatagattca
gi|4 : atgtttcataatacattatatgattcattttaaactttgatttctttgtcactttcatactttttacacataccttatatcatatttaacacacccaaatccaaacattttatctttagtgaaaagttcggcgaaattgcattcattagccttaattttaaatgacatgattgagtctcagtttgaagctttttgaaatggatctgaactcgatcacaaaggtgcattgtaaaacagtactcttctaccaatatacattatcattcaaatcaattcagagtaacaatgaaagaaaaataatgctaaaaggagaaacttatcaggaggttagtaataaagttgagaagacaagcagggccagtattggagagaagacatggcatcccgggaagattaaaagacttagaaccgcctgacgttttgactttatcaatgagtgactccattttatttatttgagaatcctaatttcgcctaacttgcaagaaaatatggcgactctatacaactgttttggtttcagcacaggatggagctacataccttgcattctgcatttttacactggttagaaaaaacatcttttggacagattaatatcgttacaaacacgaagagttaggcatccacatcttaccccgggcattcaccaagatcttcaaGTGTTTCATA------------TGTT-A-CATTTTT---AGCTTTAAATATCTTTGTCA-CTT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----G--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTTGG-GAAA--GTAT--TG-C-AT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-ATCACAGTTT---GAA---GCT--TTT-T-GAAATGGATT-T-AAC-TGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTATACTA--CTAA-T----ATA-A---A---T-C---ATCA--------AAA---ATTA-T---TCA-GAGG-T----A-A--A--C--GAAA---------------GAATTTAA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGAT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CATG--------CAG----------G-GACATTAT-GT-GA-GAGA-AG---AGGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ATCG-ATGC-A-TTTTGTCTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----C-TGAGAA-CCT-AATTTC-TCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CA-ACA-GA--TTG-TTTGGCTT--CA--ACAGG----ATGGAGCT----TACCTCACACTTAATTC-TGC----TTTTTTGC-ACTGATT--AGAGAAAACAT-TTGTGGACA-GATTAA---TATCG-TA-CAAAAC-ACGAAGAGTAAG-----------------------------------------------CC---------------------TTTGGA-C-TCTTTTC-TATT-AGGA--TTCTTAAAAGATAG-A-G-TAT-A-CAGCCCAAAAC-CACGGT-CAGA-C-GC-T-GAA-CGAACTCAAAAC-GAA-C--AT-C-AATTTTTACA-T-TTAGGAGTGTC-TTA-TTAAAAAATAAAAATGTGTG-ATAATGCTAAA--AATATCC-AAATCAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTT-------AAAACA---TTTA-C---TGTA-A----AA-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TAACGTTATC----AAGA--AA-TTTTAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAGTAAGTATCA-G-CA--TTAT---TCAC-A----A------CAATTCTA-ATAGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|5 : AGG-T----A-A--AATT--GAAA---------------GAA---AATATACTA-T-TC-TAAA-GGAGAAAC-TTGT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TAT-GGGAAGA-CAGG--------CAG----------G-GACAGTAT-GT-GA-GAAA-AG-ACATGGCATC--C-CGGGAAGA----T-----T-A-C-A--GACTTCAAAA--ACTG-ATGA-C-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-T---------------------ATTTC-GCCCTAACTTGCA-GAGAAAA--T--ATGGCAA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACGGG----ATAGAGCTAC---ACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAAC-T-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CCGCATTCATCAGATCTAAATCATTTGGA-C-TCTTTTC-TATT-AGAA--CTCGTAAACAATAG-G-G-TAT-A-GAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTAAAAAA-AAA-C--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTATTTAAA----AAAAATATGTG-ATAATGCAAAA--AATATCC-AAAACGTCTTTCTC---TTG-TTGGAAGA-GAC----A-A-----GTC-ATTTTAAAAAAAAAACA---TTTA-C---TGTA-A----AT-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTT-------------------------ATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAAATCTA-ATGAACA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TC-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|6 : GTGTTTCATGAT-A-----TA-TGTTTA-CATTTTG---AACTTTAA-TATCTTTGTCA-CTTTG---------AC-CATAATAT---------TTA-CACA-----------------------CACTA-----T--AT---A---T----------------CA-------------------------TTTTAACACCAAATCCAACATTTTTA--------------------------T-----G-GGGGAAAA--GTTTGA-GAAA--TTAT---G-C-AT-CATT-GCCCTAATTTTAACATG--A-ATTGA-T-GA-T-GTCACATTTTTTGGAA---GCT--TTTTC-GAAATGACTT-T-AAC-CGAT-CAAC--A-A-GGATGAAATTGTAAA-CAG-TA-CTCTA--CTA--CCAACT----ATA-A---A---T------TCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A-----T--GAAA---------------GAA---AA---A-TA---GC-TAAA-GGAGAAACCTTATTTCA-----G-GAGGTATTA-GTA-ATTAC--AG-TTT-GAGAAGA-CAAG--------TAG----------G-GACAGTAT-ATCGATGAGA-AG-ACATGTCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ACCG-GCGG-ACTTTTGACTTT-TC-AATG-A---GTG-AC---T-T-CCAA-CGTTA-----T-TAAGAA-CCT-AATTTC-GTCCTAACTTGTA-AAGAAAAACT--ATGGC-A-T-CT-ACA-AA--CTG-TTTAGTTT--CA--ATAGG----A-GGAGC-A---CACCTCACACTTCATTCGGGC----TTTTTTACAACTGGTT--AGAGAAAACAT-TTT--GACA-GATTGA---TATCA-TA-CAGAAC-ACGATG-GTAAGGCT----------------------TCCGCATTCACAGATTCTAAAACC---------------------TTTTGA-C-TCTTTGCTTTTT-AGGA--TCTTAAAAAGAT-T-A-G-TAT-A-CAG-CCCAAAC-CACAGTACAGA-C-AC-T-GAACCGAACT
gi|7 : ggGTGTTTCATAAT-AATTA-TA-TGGT-A-CATTTTT---ATCTTTAAATATCTTTGTTA-TGT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CATTTTAAACATCAAATCCAACATTTTT---------------------TTTT--------------------------T-----GCTGA-AATA--GTTCTG-GAAA--TTAT--TG-C-AT-CATTAAGCTTAATTGTAACTTA--A-AT-GA-C-AA-T-GTCACAATTT---GAAT--GCC--TTT-C-GAAATGGATT-T-AAC-TGAT-CAAC--AGAAGGCTGAAACTGTAAGATAG-TA-CTCTA--ATA--GCAA-T----ATA-----------------------------A---ATCA-C---C---------------A--A--T----------------------------A---A-T--C-AC-TAAA-GAAAAAGC-TCAT--CA-----G-GAGGT--TC-GTA-AC-AA--AG-TTT-GAGAAGA-CGTG--------CAG----------G-GGCAGTCT-GT-GA-TAGA-AG-ACATGGAAAC--C-CAGGAATA----C-----C-A-A-G--GACTTCAAAA--ACAG-A---------TGACTTTATC-AATGAA---TTG-A--------C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTA
gi|8 : gGTGTTTCATAAT-A-----TAGCGTT-AGCATCTCTTAAAACTTTAAATATCTTTGTTAGCTT-----------AC-CATACCTT---------TTA-TATACATCATAATATGCCATTTTAAAGCACCAAGTCCT--AC---AGTTT----------------TA-------------------------T---------------------TTTT--------------------------T-----G-TGA-AAAAATGTTCGG-GAAAATCTAT--TGAT-GT-CATTAAGCTTAATTGTAACATA--A-AC-GACT-GA-TAGTCACAATTT---GAATGGGCCTGTTT-C-AAAATGGATTAT-AAA-CCAT-CAACCAG-AAGGCTGACGTTA-AAAA-----A-TCCTAT-TAA--CCAA-TTGCCATA-ATATA---T-CCAAATCAGGCGCCT-AAAAATATCA-TC--TCA-GAGGAT----C-A--T--C--TAAA---------------GGA---AA---A-T
gi|9 : tgGTGTTTCATAAA-A-----TA-TGTT-A-CATTTTT---AGCTTTAAATATCTTTGACA-CTT-----------AC-TACACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATGGAAAACATTCGCCCGGTTTGGTTTTACATTTTATGACGTTGA
Unaligned ( gi|18 ): ACTAAAATATCTTTTACATATTGTATGCAGTTTCTTTGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 22222222222 222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 111 111 22 1111 444444444444444444444444444 111 111 3333333333333333333333333333333333 1111111111 11111 1 11111111 2222222222 11 1111111111 111 1 1111111 1 111 11111 11 1111 333333 1111 11 111 7777777777777777777777777777777777777777777777777777777777777777777 11 1 11 333333333 11 1 444444444444 3333333 11 11111 1111 1 11 1111 1 111 22222 11111 111 2222222 111 11 11111 111 33333333333 111 22 222 1 1 1 1
lowQualScore : 5 33333 5 5 5 888 0 4 77777777777 4 000000000 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 77 5 77 777 5 77 5 0 77 5 5 5 5 999 000 555 77 000 6 6 6 6 9999 7 1 5 5 44 77 5 2222 222222222222222222222222222 000 5 555 77 5 2222222222222222222222222222222222 888 8888888888 5 5 5 66 22222 5 66 0 5 5 66 5 5 5 1 88888888 1111111111 5 22 5 5 5 5 66 5 7777777777 5 777 66 0 2 1 66 5 2 111 33 2 5 9 888 5 888 555 66 0 5 3 5555555 0 55 5 000 33333 1 6 6 6 6 55 6 99 99 4444 333333 6 7777 8 11 5 8 0 8 444 6 6 1 6 0000000000000000000000000000000000000000000000000000000000000000000 5 5 00 1 6 99 1 1 1 999 6 6 6 2 6 6 5 5 5 5 3 8 8 11 8 8 8 6 6 6 6 3 222222222 1 6 1 99 1 1 6 1 1 33 3 000000000000 8 8888888 11 77777 99 7777 8 6 8 8 8 8 11 7777 0 444 6 00000 55555 3 99 8 8 8 444 0 6666666 444 11 8 8 0 8 66666 444 8 11111111111 1 8 6 6 6 111 6 6 6 00 3 9999 6 99 6 6 6 6 6 0 333 3 3 3 3
lowQualScore : . ..... . . . ... . . ........... . ......... . ................................................................................................................................................... . . .. . .. ... . .. . . .. . . . . ... ... ... .. ... . . . . .... . . . . .. .. . .... ........................... ... . ... .. . .................................. ... .......... . . . .. ..... . .. . . . .. . . . . ........ .......... . .. . . . . .. . .......... . ... .. . . . .. . . ... .. . . . ... . ... ... .. . . . ....... . .. . ... ..... . . . . . .. . .. .. .... ...... . .... . .. . . . . ... . . . . ................................................................... . . .. . . .. . . . ... . . . . . . . . . . . . . .. . . . . . . . . ......... . . . .. . . . . . .. . ............ . ....... .. ..... .. .... . . . . . . .. .... . ... . ..... ..... . .. . . . ... . ....... ... .. . . . . ..... ... . ........... . . . . . ... . . . .. . .... . .. . . . . . . ... . . . .
lowQualScore : 0 11111 0 0 0 888 4 4 22222222222 4 000000000 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 99 7 99 000 0 00 0 7 99 7 7 7 7 444 000 777 99 444 7 7 7 7 3333 2 7 7 7 77 99 7 1111 333333333333333333333333333 000 7 777 11 0 0000000000000000000000000000000000 888 3333333333 7 7 0 99 55555 0 99 0 0 0 99 0 0 0 2 11111111 9999999999 0 66 0 0 0 0 99 0 9999999999 0 000 99 1 5 0 99 0 2 999 22 5 0 4 888 0 888 111 99 0 0 2 2222222 0 11 7 888 33333 0 7 7 7 7 88 7 22 22 2222 777777 7 0000 0 00 6 0 8 0 000 7 7 0 7 9999999999999999999999999999999999999999999999999999999999999999999 7 7 00 0 7 22 0 0 7 333 7 7 7 5 7 7 7 7 7 7 3 0 0 00 0 0 8 7 7 7 7 5 222222222 0 7 0 22 7 7 7 0 7 33 3 000000000000 0 6666666 00 00000 00 0000 0 0 0 0 0 0 00 0000 6 000 0 88888 44444 8 00 0 0 0 000 8 0000000 000 00 0 0 8 0 88888 000 0 00000000000 0 0 7 7 7 777 7 7 7 77 2 3333 7 22 7 7 7 7 7 8 333 3 3 3 3
consensus : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A--A--T--GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGATAG-A-GT-AT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAA----AAAAATGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTTT----AAAAAACA--TTTA-C---TGT-TA----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTAATT----AAGA--AA-TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
Reference ( family-244 ) : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A--A--T--GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGATAG-A-GT-AT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAA----AAAAATGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTTT----AAAAAACA--TTTA-C---TGT-NA----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTAATT----AAGA--AA-TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|1 : GTGTTTCATAATGA-----TA-TGTT-A-CATTTCT---AACTTTAAATATCTTGTTCA-CCT-----------AC-CATACATT---------TTA-CACA-----------------------CACCA-----TATAT---A---TTTTTAAACACCAAATCCAATAT---------------------T---------------------TTTAGTTTT---------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTATATTG-CTAT-CATTAGCCTTA-TTTTAACATGTAA-AT-GA-T-GAAT-GTCACAGTTT---GAA---ACT--TTT-TTGAAATGGATT-T-AAC-TGATTCAAC--A-AAAGATGAAATTCTATAACAG-TA-CTCTA--CTA--CCAA-T----ATAGA---A---T-C---ATCA------A-AAA---ATCA-T---TCAAGAGG-T----AGA--A--T--GAAA---------------GAA---AA-----TA-T-GC-CTAA-GGAGAAAC-TTAT--CA-----G-GA-GT--TA-GTA-AT-AA--AGTTTT-GAGAA-A-CAAG--------CAG----------G-GACAGTATGGT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-ACC-A--GACGTCAATA--ACCG-ATGA-C-TTTTGA-TTTATCAAATG-A---GTG-AC---TCC-C--ACC-TTA-----CGTGAGAA-CCTAAATTTCGGCCCTAAC-TGCATAATAAAA--TCAATGGCGA-TCCT-ACA-GAG-CTG--TTGGTTT--CA--ACAGG----ATGGAGGCGCGACATCTCACACTTCAATC-TACTTTTTTTTTTAC-ACTGGTTTGAGAGAAAAACT-TTTTGAACATGATTAATTTTATCG-TAGCAGAACAACGAGAAGTAGGGCTTCGGCATTCACCAGAATCTAAAT---------------------CC---------------------TTTGGATC-TC-TCTC-TAGTAAGGA--TT-TTAAAAGATAA-AGGT-ATAA-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAAGCAAACTCAAATG-AAA-C--ATGCAAATTTTTATA-T-TTAAGAGTGTCTTTA-TT-AA----AGAAATGTGTGA-TCATGCGAAA--TATTCCC-AAAAGATCTTCCTCTTGGT--TTGGAGGATGAC-TCGTAA-----GTC-ATTTT----AAAAAACA--TTTA-A---CGTGTA----AG-TGTGAACGTTATGAGAT-TGG-G-A--TAT----GAT-AAAA---TGACGTAATT----AAGA--AA-TTTGATAAAATTTCAGTTTGTT-TGAT---TCAA-------ATGTCCG---CTTAAGATT-T-TGAAAAT-AGGTTCA-GTTATTTTAT---TTACTATATCA------TAAGTCTATATGGATATC-AT-GTAGTGTTTATATTG-ATAA-AAACGTTTTTTTC--TGTTAATCTAGT--T-CCCTGTG-TTTGT-TCAATTTATAGATTCAAATTAATGTAAACATATATTTATGGAAACACGCCTG
gi|10 : ag-TCAT--CA-----GCGAGGT--TAAGTAGAC-AA--AA-TTTTGAGAAGA-CAGG--------GAG----------C-GTCATTCC--T-GA-TAAA-AGTACATGACAAC--CGCGGGGACAGCAGC-----C-A-ACA--GGCTT--ACA----CA-ATAA-A-T---AACTTTATC-AGTGAA---GTGAAC---T-CGC--A-T-TTA-----T-TGAAAA-CC--AATTT
gi|11 : gaggaagggcgCTTTGTTA-CTT-----------AC-CATACCTT---------TTA-CATA-----------------------CACCT-----T--AT---A---T----------------CA-------------------------T---------------------TCTAAACATAAAATCCCACATTTTTATTTTT-----G-TGA-AAAA--GTTCAG-GAAA--TTAT--TG-T-GT-CATTAg
gi|12 : ATA-C-AT-ATAG---TTACA-GG-ATAA-AAAC-TATTTT-A--T-TT-ATCTATT--T-TCT-GTG-TTTGC-TCAA-T--TAGATTCAa
gi|13 : TTATA-T-TTAGGAGTATC-TTA-GTAAA-----------TGTGA--AAT---------ATATCCAAAAACAGCTTCCTCTTGTT--T--GAAGA-
gi|14 : G-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------TCCGCGTTCACCAGATCTAAAACC---------------------TTTGGA-C-TCTCTTC-TA
gi|15 : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACATTGAATATCTTTGTTA-CTT-----------AC-CAT
gi|16 : ggAT--TG-C-AT-CATTAGCCTTAATTTTAAGATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-
gi|2 : AAAACAGATATCTCTA--ATAAGCCAA-T----ATA-A---AATATAC---ATCA------T-AAA---AGCA-TGTTTC--GACG-TTGTAA-A--A--TCCGAAAAGGCAGTATAGTGATGAA---AACA-A-TA-TAGCATAAG-GTAGAGAC-TTAT--CATCGACG-TAAGA--TATGTA-AC-AACAGG-CTT-GTGAGCATCGAGTTATCTCGCAGCTCGAGATGTGCGACAGTAT--T-GA-TAGATAG-A------ATCAAC-CGAGAACG----TACGCAC-A-A-ATAGAC--CAACATGAGTG-AAGA-A-TT--GA----ATC-AATGAATCAGTG-ACAAAT-C-C--A-C-T-A-----T-TGAGAAACCT-AATTGT-GCTCT--CTTA--------------------GA-T-CTTACA-AAACTTG-TTTAGTTTATCA--ACAGAGGGAATAGAGCTAC---ACCTCACACTTCATTC-TG
gi|2 : GA-C-TCTTTC---AGC-ATGA--TTCTTAAACGATGGTA-GTTAT-A-TAGCCCCAAAC-T-CAGT-GCGACC-AC-T-ggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|2 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtAGA-CCAC-TTGAA-CGA-CTCAAAAGCGAA-CTCAT-C-AA-TTTTATAATATTAGGAGTGTC-TTA-TTTAA----AAA--TGTGTGAATAATGCGAAATTAACA--C-AAAACAGCTTTCTCTGGTTGTTTGGAAG--GAT-TGGT-A------TC-ATTTT-----AGAACCGTTTTTA-CTCGTGT-TATTCTAG-TATGTACGACTCGAGATGT-GAG-AATTATCATAGGTACAAATATTGACGTAATTCTCAAAGACCCA-TTTGAC-TAACATTAG-TTA-TATGATCTGTCAAGATATCGGTATCCGGTCTTTACA--TGTGTGAAAATAA-GTTCATGCTC--TCATATCTCAC-A----ATAGGGCCAAATCTA-ATAGATA-CGATAGTAG---TTATA-TGCATAACAAAA-TCTCTTGCGTC-TC-ATCTGATTAT-CCC-ACGTTTTGTGTCAA-ctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaTGTTTCATAAT-ACATTATA-TGAT-T-CATTTTA---AACTTTGATT-TCTTTGTCA-CTTTCATACTTTTTACACATACCTTATATCATATTTAACACA-----------------------C-CCA-----A--ATCCAA---A----------------CA-------------------------T---------------------TTTA--------------------------TCTTTAG-TGA-AAA---GTTCGGCGAAA--TT-----G-C-ATTCATTAGCCTTAATTTTAA-ATG--ACAT-GA-TTGA---GTCTCAGTTT---GAA---GCT--TTT-T-GAAATGGATC-TGAACTCGAT-CA-C--A-AAGG-TGCA-TTGTAAAACAG-TA-CTCT-T-CTA--CCAA-T----ATA-C---A---T-T---ATCA------TTCAA---ATCAAT---TCA-GAG--T----A-ACAA--T--GAAA---------------GAA---AA---A-TAAT-GC-TAAAAGGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TT--GAGAAGA-CAAG--------CAG----------G-GCCAGTAT-TG-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----TAA-A-A--GACTT--AGA--ACCGCCTGACG-TTTTGACTTTATC-AATG-A---GTG-AC---T-C-C--ATT-TTATTTATT-TGAGAATCCT-AATTTC-G-CCTAACTTGC--AAGAAAA--T--ATGGCGACT-CT-ATACAA--CTGTTTTGGTTT--CAGCACAGG----ATGGAGCTACA-TACCT-----TGCATTC-TGC----ATTTTTAC-ACTGGTT--AGAAAAAACATCTTTTGGACA-GATTAA---TATCGTTA-CA-AAC-ACGAAGAGTTAGGCA----------------------T---------------------CC---------------------atccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : a----------------------T---------------------CC---------------------TTTCGA-CCTCTTTT--TAAT-AGGAATTCCTTAAATGATAG-G-GT-AT-ATCAGCCC--AACACACAGT-CA-A-C-ACCT-GAA-CGAAA--AAAAG-GGATC--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTA-TTAAA-----------TGTGA-TAATGCGATA--AA-ATTC-AAAAAAATCGTCTACTCTTG-TTGGAAGAAGACGT-TT-ACCGGTGTCCATTT-------AGAACA--TTTAAC---TGT-TA----AGATGTG-ACGTTATGAGAT-T-G-GAA--TAT----GAT-AAAA---TGACGTAATT----AAGA--AATTTTTAT-AAATTTCAG-TTG-T-TGAT---TC-A-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAACTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAC-AAACTTTTTTTTC--T-TT-ATCTAGT--TCCCC-GTG-TTTGT-TC-A-TTATAGATTCAacatcttaccccgggcattcaccaagatcttcaatcctttcgacctctttttaataggaattccttaaatgatagggtatatcagcccaacacacagtcaacacctgaacgaaaaaaagggatcatcaaattttatatttaggagtgtcttattaaatgtgataatgcgataaaattcaaaaaaatcgtctactcttgttggaagaagacgtttaccggtgtccatttagaacatttaactgttaagatgtgacgttatgagattggaatatgataaaatgacgtaattaagaaatttttataaatttcagttgttgattcaatgtccgcttaaatttgaaaataaggttcagtattattcacaacaactctaatggatacatgtagttatatgatacaaacttttttttctttatctagttccccgtgtttgttcattatagattca
gi|4 : atgtttcataatacattatatgattcattttaaactttgatttctttgtcactttcatactttttacacataccttatatcatatttaacacacccaaatccaaacattttatctttagtgaaaagttcggcgaaattgcattcattagccttaattttaaatgacatgattgagtctcagtttgaagctttttgaaatggatctgaactcgatcacaaaggtgcattgtaaaacagtactcttctaccaatatacattatcattcaaatcaattcagagtaacaatgaaagaaaaataatgctaaaaggagaaacttatcaggaggttagtaataaagttgagaagacaagcagggccagtattggagagaagacatggcatcccgggaagattaaaagacttagaaccgcctgacgttttgactttatcaatgagtgactccattttatttatttgagaatcctaatttcgcctaacttgcaagaaaatatggcgactctatacaactgttttggtttcagcacaggatggagctacataccttgcattctgcatttttacactggttagaaaaaacatcttttggacagattaatatcgttacaaacacgaagagttaggcatccacatcttaccccgggcattcaccaagatcttcaaGTGTTTCATA------------TGTT-A-CATTTTT---AGCTTTAAATATCTTTGTCA-CTT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----G--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTTGG-GAAA--GTAT--TG-C-AT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-ATCACAGTTT---GAA---GCT--TTT-T-GAAATGGATT-T-AAC-TGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTATACTA--CTAA-T----ATA-A---A---T-C---ATCA--------AAA---ATTA-T---TCA-GAGG-T----A-A--A--C--GAAA---------------GAATTTAA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGAT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CATG--------CAG----------G-GACATTAT-GT-GA-GAGA-AG---AGGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ATCG-ATGC-A-TTTTGTCTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----C-TGAGAA-CCT-AATTTC-TCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CA-ACA-GA--TTG-TTTGGCTT--CA--ACAGG----ATGGAGCT----TACCTCACACTTAATTC-TGC----TTTTTTGC-ACTGATT--AGAGAAAACAT-TTGTGGACA-GATTAA---TATCG-TA-CAAAAC-ACGAAGAGTAAG-----------------------------------------------CC---------------------TTTGGA-C-TCTTTTC-TATT-AGGA--TTCTTAAAAGATAG-A-GT-AT-A-CAGCCCAAAAC-CACGGT-CAGA-C-GC-T-GAA-CGAACTCAAAAC-GAA-C--AT-C-AATTTTTACA-T-TTAGGAGTGTC-TTA-TTAAAAAATAAAAATGTGTGA-TAATGCTAAA--AATATCC-AAATCAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTT-------AAAACA--TTTA-C---TGT-AA----AA-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TAACGTTATC----AAGA--AA-TTTTAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAGTAAGTATCA-G-CA--TTAT---TCAC-A----A------CAATTCTA-ATAGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|5 : AGG-T----A-A--AATT--GAAA---------------GAA---AATATACTA-T-TC-TAAA-GGAGAAAC-TTGT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TAT-GGGAAGA-CAGG--------CAG----------G-GACAGTAT-GT-GA-GAAA-AG-ACATGGCATC--C-CGGGAAGA----T-----T-A-C-A--GACTTCAAAA--ACTG-ATGA-C-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-T---------------------ATTTC-GCCCTAACTTGCA-GAGAAAA--T--ATGGCAA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACGGG----ATAGAGCTAC---ACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAAC-T-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CCGCATTCATCAGATCTAAATCATTTGGA-C-TCTTTTC-TATT-AGAA--CTCGTAAACAATAG-G-GT-AT-A-GAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTAAAAAA-AAA-C--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTATTTAAA----AAAAATATGTGA-TAATGCAAAA--AATATCC-AAAACGTCTTTCTC---TTG-TTGGAAGA-GAC----A-A-----GTC-ATTTTAAAAAAAAAACA--TTTA-C---TGT-AA----AT-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGT--T-----------------------ATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAAATCTA-ATGAACA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TC-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|6 : GTGTTTCATGAT-A-----TA-TGTTTA-CATTTTG---AACTTTAA-TATCTTTGTCA-CTTTG---------AC-CATAATAT---------TTA-CACA-----------------------CACTA-----T--AT---A---T----------------CA-------------------------TTTTAACACCAAATCCAACATTTTTA--------------------------T-----G-GGGGAAAA--GTTTGA-GAAA--TTAT---G-C-AT-CATT-GCCCTAATTTTAACATG--A-ATTGA-T-GA-T-GTCACATTTTTTGGAA---GCT--TTTTC-GAAATGACTT-T-AAC-CGAT-CAAC--A-A-GGATGAAATTGTAAA-CAG-TA-CTCTA--CTA--CCAACT----ATA-A---A---T------TCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A-----T--GAAA---------------GAA---AA---A-TA---GC-TAAA-GGAGAAACCTTATTTCA-----G-GAGGTATTA-GTA-ATTAC--AG-TTT-GAGAAGA-CAAG--------TAG----------G-GACAGTAT-ATCGATGAGA-AG-ACATGTCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ACCG-GCGG-ACTTTTGACTTT-TC-AATG-A---GTG-AC---T-T-CCAA-CGTTA-----T-TAAGAA-CCT-AATTTC-GTCCTAACTTGTA-AAGAAAAACT--ATGGC-A-T-CT-ACA-AA--CTG-TTTAGTTT--CA--ATAGG----A-GGAGC-A---CACCTCACACTTCATTCGGGC----TTTTTTACAACTGGTT--AGAGAAAACAT-TTT--GACA-GATTGA---TATCA-TA-CAGAAC-ACGATG-GTAAGGCT----------------------TCCGCATTCACAGATTCTAAAACC---------------------TTTTGA-C-TCTTTGCTTTTT-AGGA--TCTTAAAAAGAT-T-A-GT-AT-A-CAG-CCCAAAC-CACAGTACAGA-C-AC-T-GAACCGAACT
gi|7 : ggGTGTTTCATAAT-AATTA-TA-TGGT-A-CATTTTT---ATCTTTAAATATCTTTGTTA-TGT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CATTTTAAACATCAAATCCAACATTTTT---------------------TTTT--------------------------T-----GCTGA-AATA--GTTCTG-GAAA--TTAT--TG-C-AT-CATTAAGCTTAATTGTAACTTA--A-AT-GA-C-AA-T-GTCACAATTT---GAAT--GCC--TTT-C-GAAATGGATT-T-AAC-TGAT-CAAC--AGAAGGCTGAAACTGTAAGATAG-TA-CTCTA--ATA--GCAA-T----ATA-----------------------------A---ATCA-C---C---------------A--A--T----------------------------A---A-T--C-AC-TAAA-GAAAAAGC-TCAT--CA-----G-GAGGT--TC-GTA-AC-AA--AG-TTT-GAGAAGA-CGTG--------CAG----------G-GGCAGTCT-GT-GA-TAGA-AG-ACATGGAAAC--C-CAGGAATA----C-----C-A-A-G--GACTTCAAAA--ACAG-A---------TGACTTTATC-AATGAA---TTG-A--------C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTA
gi|8 : gGTGTTTCATAAT-A-----TAGCGTT-AGCATCTCTTAAAACTTTAAATATCTTTGTTAGCTT-----------AC-CATACCTT---------TTA-TATACATCATAATATGCCATTTTAAAGCACCAAGTCCT--AC---AGTTT----------------TA-------------------------T---------------------TTTT--------------------------T-----G-TGA-AAAAATGTTCGG-GAAAATCTAT--TGAT-GT-CATTAAGCTTAATTGTAACATA--A-AC-GACT-GA-TAGTCACAATTT---GAATGGGCCTGTTT-C-AAAATGGATTAT-AAA-CCAT-CAACCAG-AAGGCTGACGTTA-AAAA-----A-TCCTAT-TAA--CCAA-TTGCCATA-ATATA---T-CCAAATCAGGCGCCT-AAAAATATCA-TC--TCA-GAGGAT----C-A--T--C--TAAA---------------GGA---AA---A-T
gi|9 : tgGTGTTTCATAAA-A-----TA-TGTT-A-CATTTTT---AGCTTTAAATATCTTTGACA-CTT-----------AC-TACACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATGGAAAACATTCGCCCGGTTTGGTTTTACATTTTATGACGTTGA
Unaligned ( gi|18 ): ACTAAAATATCTTTTACATATTGTATGCAGTTTCTTTGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 22222222222 222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 111 111 22 1111 444444444444444444444444444 111 111 3333333333333333333333333333333333 1111111111 11111 1 11111111 2222222222 11 1111111111 111 1 1111111 1 111 11111 11 1111 333333 1111 11 111 7777777777777777777777777777777777777777777777777777777777777777777 11 1 11 333333333 11 1 444444444444 3333333 11 11111 1111111 1 11 1111 1 111 22222 11111 111 2222222 111 11 11111 111 33333333333 111 22 222 1 1 1 1
lowQualScore : 5 33333 5 5 5 888 0 4 77777777777 4 000000000 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 77 5 77 777 5 77 5 0 77 5 5 5 5 999 000 555 77 000 6 6 6 6 9999 7 1 5 5 44 77 5 2222 222222222222222222222222222 000 5 555 77 5 2222222222222222222222222222222222 888 8888888888 5 5 5 66 22222 5 66 0 5 5 66 5 5 5 1 88888888 1111111111 5 22 5 5 5 5 66 5 7777777777 5 777 66 0 2 1 66 5 2 111 33 2 5 9 888 5 888 555 66 0 5 3 5555555 0 55 5 000 33333 1 6 6 6 6 55 6 99 99 4444 333333 6 7777 8 11 5 8 0 8 444 6 6 1 6 0000000000000000000000000000000000000000000000000000000000000000000 5 5 00 1 6 99 1 1 1 999 6 6 6 2 6 6 5 5 5 5 3 8 8 11 8 8 8 6 6 6 6 3 222222222 1 6 1 99 1 1 6 1 1 33 3 000000000000 8 8888888 11 77777 7777777 8 6 8 8 8 8 11 7777 0 444 6 00000 55555 3 99 8 8 8 444 0 6666666 444 11 8 8 0 8 66666 444 8 11111111111 1 8 6 6 6 111 6 6 6 00 3 9999 6 99 6 6 6 6 6 0 333 3 3 3 3
lowQualScore : . ..... . . . ... . . ........... . ......... . ................................................................................................................................................... . . .. . .. ... . .. . . .. . . . . ... ... ... .. ... . . . . .... . . . . .. .. . .... ........................... ... . ... .. . .................................. ... .......... . . . .. ..... . .. . . . .. . . . . ........ .......... . .. . . . . .. . .......... . ... .. . . . .. . . ... .. . . . ... . ... ... .. . . . ....... . .. . ... ..... . . . . . .. . .. .. .... ...... . .... . .. . . . . ... . . . . ................................................................... . . .. . . .. . . . ... . . . . . . . . . . . . . .. . . . . . . . . ......... . . . .. . . . . . .. . ............ . ....... .. ..... ....... . . . . . . .. .... . ... . ..... ..... . .. . . . ... . ....... ... .. . . . . ..... ... . ........... . . . . . ... . . . .. . .... . .. . . . . . . ... . . . .
lowQualScore : 0 11111 0 0 0 888 4 4 22222222222 4 000000000 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 99 7 99 000 0 00 0 7 99 7 7 7 7 444 000 777 99 444 7 7 7 7 3333 2 7 7 7 77 99 7 1111 333333333333333333333333333 000 7 777 11 0 0000000000000000000000000000000000 888 3333333333 7 7 0 99 55555 0 99 0 0 0 99 0 0 0 2 11111111 9999999999 0 66 0 0 0 0 99 0 9999999999 0 000 99 1 5 0 99 0 2 999 22 5 0 4 888 0 888 111 99 0 0 2 2222222 0 11 7 888 33333 0 7 7 7 7 88 7 22 22 2222 777777 7 0000 0 00 6 0 8 0 000 7 7 0 7 9999999999999999999999999999999999999999999999999999999999999999999 7 7 00 0 7 22 0 0 7 333 7 7 7 5 7 7 7 7 7 7 3 0 0 00 0 0 8 7 7 7 7 5 222222222 0 7 0 22 7 7 7 0 7 33 3 000000000000 0 6666666 00 00000 4444444 0 0 0 0 0 0 00 0000 6 000 0 88888 44444 8 00 0 0 0 000 8 0000000 000 00 0 0 8 0 88888 000 0 00000000000 0 0 7 7 7 777 7 7 7 77 2 3333 7 22 7 7 7 7 7 8 333 3 3 3 3
consensus : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A--A--T--GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGATAG-A-GT-AT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAA----AAAAATGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTTT----AAAAAACA--TTTA-C---TGT-TA----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTAATT----AAGA--AA-TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
Reference ( family-244 ) : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A--A--T--GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGATAG-A-GT-AT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAA----AAAAATGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTTT----AAAAAACA--TTTA-C---TGT-TA----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTAATT----AAGA--AA-TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|1 : GTGTTTCATAATGA-----TA-TGTT-A-CATTTCT---AACTTTAAATATCTTGTTCA-CCT-----------AC-CATACATT---------TTA-CACA-----------------------CACCA-----TATAT---A---TTTTTAAACACCAAATCCAATAT---------------------T---------------------TTTAGTTTT---------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTATATTG-CTAT-CATTAGCCTTA-TTTTAACATGTAA-AT-GA-T-GAAT-GTCACAGTTT---GAA---ACT--TTT-TTGAAATGGATT-T-AAC-TGATTCAAC--A-AAAGATGAAATTCTATAACAG-TA-CTCTA--CTA--CCAA-T----ATAGA---A---T-C---ATCA------A-AAA---ATCA-T---TCAAGAGG-T----AGA--A--T--GAAA---------------GAA---AA-----TA-T-GC-CTAA-GGAGAAAC-TTAT--CA-----G-GA-GT--TA-GTA-AT-AA--AGTTTT-GAGAA-A-CAAG--------CAG----------G-GACAGTATGGT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-ACC-A--GACGTCAATA--ACCG-ATGA-C-TTTTGA-TTTATCAAATG-A---GTG-AC---TCC-C--ACC-TTA-----CGTGAGAA-CCTAAATTTCGGCCCTAAC-TGCATAATAAAA--TCAATGGCGA-TCCT-ACA-GAG-CTG--TTGGTTT--CA--ACAGG----ATGGAGGCGCGACATCTCACACTTCAATC-TACTTTTTTTTTTAC-ACTGGTTTGAGAGAAAAACT-TTTTGAACATGATTAATTTTATCG-TAGCAGAACAACGAGAAGTAGGGCTTCGGCATTCACCAGAATCTAAAT---------------------CC---------------------TTTGGATC-TC-TCTC-TAGTAAGGA--TT-TTAAAAGATAA-AGGT-ATAA-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAAGCAAACTCAAATG-AAA-C--ATGCAAATTTTTATA-T-TTAAGAGTGTCTTTA-TT-AA----AGAAATGTGTGA-TCATGCGAAA--TATTCCC-AAAAGATCTTCCTCTTGGT--TTGGAGGATGAC-TCGTAA-----GTC-ATTTT----AAAAAACA--TTTA-A---CGTGTA----AG-TGTGAACGTTATGAGAT-TGG-G-A--TAT----GAT-AAAA---TGACGTAATT----AAGA--AA-TTTGATAAAATTTCAGTTTGTT-TGAT---TCAA-------ATGTCCG---CTTAAGATT-T-TGAAAAT-AGGTTCA-GTTATTTTAT---TTACTATATCA------TAAGTCTATATGGATATC-AT-GTAGTGTTTATATTG-ATAA-AAACGTTTTTTTC--TGTTAATCTAGT--T-CCCTGTG-TTTGT-TCAATTTATAGATTCAAATTAATGTAAACATATATTTATGGAAACACGCCTG
gi|10 : ag-TCAT--CA-----GCGAGGT--TAAGTAGAC-AA--AA-TTTTGAGAAGA-CAGG--------GAG----------C-GTCATTCC--T-GA-TAAA-AGTACATGACAAC--CGCGGGGACAGCAGC-----C-A-ACA--GGCTT--ACA----CA-ATAA-A-T---AACTTTATC-AGTGAA---GTGAAC---T-CGC--A-T-TTA-----T-TGAAAA-CC--AATTT
gi|11 : gaggaagggcgCTTTGTTA-CTT-----------AC-CATACCTT---------TTA-CATA-----------------------CACCT-----T--AT---A---T----------------CA-------------------------T---------------------TCTAAACATAAAATCCCACATTTTTATTTTT-----G-TGA-AAAA--GTTCAG-GAAA--TTAT--TG-T-GT-CATTAg
gi|12 : ATA-C-AT-ATAG---TTACA-GG-ATAA-AAAC-TATTTT-A--T-TT-ATCTATT--T-TCT-GTG-TTTGC-TCAA-T--TAGATTCAa
gi|13 : TTATA-T-TTAGGAGTATC-TTA-GTAAA-----------TGTGA--AAT---------ATATCCAAAAACAGCTTCCTCTTGTT--T--GAAGA-
gi|14 : G-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------TCCGCGTTCACCAGATCTAAAACC---------------------TTTGGA-C-TCTCTTC-TA
gi|15 : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACATTGAATATCTTTGTTA-CTT-----------AC-CAT
gi|16 : ggAT--TG-C-AT-CATTAGCCTTAATTTTAAGATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-
gi|2 : AAAACAGATATCTCTA--ATAAGCCAA-T----ATA-A---AATATAC---ATCA------T-AAA---AGCA-TGTTTC--GACG-TTGTAA-A--A--TCCGAAAAGGCAGTATAGTGATGAA---AACA-A-TA-TAGCATAAG-GTAGAGAC-TTAT--CATCGACG-TAAGA--TATGTA-AC-AACAGG-CTT-GTGAGCATCGAGTTATCTCGCAGCTCGAGATGTGCGACAGTAT--T-GA-TAGATAG-A------ATCAAC-CGAGAACG----TACGCAC-A-A-ATAGAC--CAACATGAGTG-AAGA-A-TT--GA----ATC-AATGAATCAGTG-ACAAAT-C-C--A-C-T-A-----T-TGAGAAACCT-AATTGT-GCTCT--CTTA--------------------GA-T-CTTACA-AAACTTG-TTTAGTTTATCA--ACAGAGGGAATAGAGCTAC---ACCTCACACTTCATTC-TG
gi|2 : GA-C-TCTTTC---AGC-ATGA--TTCTTAAACGATGGTA-GTTAT-A-TAGCCCCAAAC-T-CAGT-GCGACC-AC-T-ggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|2 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtAGA-CCAC-TTGAA-CGA-CTCAAAAGCGAA-CTCAT-C-AA-TTTTATAATATTAGGAGTGTC-TTA-TTTAA----AAA--TGTGTGAATAATGCGAAATTAACA--C-AAAACAGCTTTCTCTGGTTGTTTGGAAG--GAT-TGGT-A------TC-ATTTT-----AGAACCGTTTTTA-CTCGTGT-TATTCTAG-TATGTACGACTCGAGATGT-GAG-AATTATCATAGGTACAAATATTGACGTAATTCTCAAAGACCCA-TTTGAC-TAACATTAG-TTA-TATGATCTGTCAAGATATCGGTATCCGGTCTTTACA--TGTGTGAAAATAA-GTTCATGCTC--TCATATCTCAC-A----ATAGGGCCAAATCTA-ATAGATA-CGATAGTAG---TTATA-TGCATAACAAAA-TCTCTTGCGTC-TC-ATCTGATTAT-CCC-ACGTTTTGTGTCAA-ctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaTGTTTCATAAT-ACATTATA-TGAT-T-CATTTTA---AACTTTGATT-TCTTTGTCA-CTTTCATACTTTTTACACATACCTTATATCATATTTAACACA-----------------------C-CCA-----A--ATCCAA---A----------------CA-------------------------T---------------------TTTA--------------------------TCTTTAG-TGA-AAA---GTTCGGCGAAA--TT-----G-C-ATTCATTAGCCTTAATTTTAA-ATG--ACAT-GA-TTGA---GTCTCAGTTT---GAA---GCT--TTT-T-GAAATGGATC-TGAACTCGAT-CA-C--A-AAGG-TGCA-TTGTAAAACAG-TA-CTCT-T-CTA--CCAA-T----ATA-C---A---T-T---ATCA------TTCAA---ATCAAT---TCA-GAG--T----A-ACAA--T--GAAA---------------GAA---AA---A-TAAT-GC-TAAAAGGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TT--GAGAAGA-CAAG--------CAG----------G-GCCAGTAT-TG-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----TAA-A-A--GACTT--AGA--ACCGCCTGACG-TTTTGACTTTATC-AATG-A---GTG-AC---T-C-C--ATT-TTATTTATT-TGAGAATCCT-AATTTC-G-CCTAACTTGC--AAGAAAA--T--ATGGCGACT-CT-ATACAA--CTGTTTTGGTTT--CAGCACAGG----ATGGAGCTACA-TACCT-----TGCATTC-TGC----ATTTTTAC-ACTGGTT--AGAAAAAACATCTTTTGGACA-GATTAA---TATCGTTA-CA-AAC-ACGAAGAGTTAGGCA----------------------T---------------------CC---------------------atccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : a----------------------T---------------------CC---------------------TTTCGA-CCTCTTTT--TAAT-AGGAATTCCTTAAATGATAG-G-GT-AT-ATCAGCCC--AACACACAGT-CA-A-C-ACCT-GAA-CGAAA--AAAAG-GGATC--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTA-TTAAA-----------TGTGA-TAATGCGATA--AA-ATTC-AAAAAAATCGTCTACTCTTG-TTGGAAGAAGACGT-TT-ACCGGTGTCCATTT-------AGAACA--TTTAAC---TGT-TA----AGATGTG-ACGTTATGAGAT-T-G-GAA--TAT----GAT-AAAA---TGACGTAATT----AAGA--AATTTTTAT-AAATTTCAG-TTG-T-TGAT---TC-A-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAACTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAC-AAACTTTTTTTTC--T-TT-ATCTAGT--TCCCC-GTG-TTTGT-TC-A-TTATAGATTCAacatcttaccccgggcattcaccaagatcttcaatcctttcgacctctttttaataggaattccttaaatgatagggtatatcagcccaacacacagtcaacacctgaacgaaaaaaagggatcatcaaattttatatttaggagtgtcttattaaatgtgataatgcgataaaattcaaaaaaatcgtctactcttgttggaagaagacgtttaccggtgtccatttagaacatttaactgttaagatgtgacgttatgagattggaatatgataaaatgacgtaattaagaaatttttataaatttcagttgttgattcaatgtccgcttaaatttgaaaataaggttcagtattattcacaacaactctaatggatacatgtagttatatgatacaaacttttttttctttatctagttccccgtgtttgttcattatagattca
gi|4 : atgtttcataatacattatatgattcattttaaactttgatttctttgtcactttcatactttttacacataccttatatcatatttaacacacccaaatccaaacattttatctttagtgaaaagttcggcgaaattgcattcattagccttaattttaaatgacatgattgagtctcagtttgaagctttttgaaatggatctgaactcgatcacaaaggtgcattgtaaaacagtactcttctaccaatatacattatcattcaaatcaattcagagtaacaatgaaagaaaaataatgctaaaaggagaaacttatcaggaggttagtaataaagttgagaagacaagcagggccagtattggagagaagacatggcatcccgggaagattaaaagacttagaaccgcctgacgttttgactttatcaatgagtgactccattttatttatttgagaatcctaatttcgcctaacttgcaagaaaatatggcgactctatacaactgttttggtttcagcacaggatggagctacataccttgcattctgcatttttacactggttagaaaaaacatcttttggacagattaatatcgttacaaacacgaagagttaggcatccacatcttaccccgggcattcaccaagatcttcaaGTGTTTCATA------------TGTT-A-CATTTTT---AGCTTTAAATATCTTTGTCA-CTT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----G--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTTGG-GAAA--GTAT--TG-C-AT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-ATCACAGTTT---GAA---GCT--TTT-T-GAAATGGATT-T-AAC-TGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTATACTA--CTAA-T----ATA-A---A---T-C---ATCA--------AAA---ATTA-T---TCA-GAGG-T----A-A--A--C--GAAA---------------GAATTTAA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGAT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CATG--------CAG----------G-GACATTAT-GT-GA-GAGA-AG---AGGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ATCG-ATGC-A-TTTTGTCTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----C-TGAGAA-CCT-AATTTC-TCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CA-ACA-GA--TTG-TTTGGCTT--CA--ACAGG----ATGGAGCT----TACCTCACACTTAATTC-TGC----TTTTTTGC-ACTGATT--AGAGAAAACAT-TTGTGGACA-GATTAA---TATCG-TA-CAAAAC-ACGAAGAGTAAG-----------------------------------------------CC---------------------TTTGGA-C-TCTTTTC-TATT-AGGA--TTCTTAAAAGATAG-A-GT-AT-A-CAGCCCAAAAC-CACGGT-CAGA-C-GC-T-GAA-CGAACTCAAAAC-GAA-C--AT-C-AATTTTTACA-T-TTAGGAGTGTC-TTA-TTAAAAAATAAAAATGTGTGA-TAATGCTAAA--AATATCC-AAATCAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTT-------AAAACA--TTTA-C---TGT-AA----AA-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TAACGTTATC----AAGA--AA-TTTTAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAGTAAGTATCA-G-CA--TTAT---TCAC-A----A------CAATTCTA-ATAGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|5 : AGG-T----A-A--AATT--GAAA---------------GAA---AATATACTA-T-TC-TAAA-GGAGAAAC-TTGT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TAT-GGGAAGA-CAGG--------CAG----------G-GACAGTAT-GT-GA-GAAA-AG-ACATGGCATC--C-CGGGAAGA----T-----T-A-C-A--GACTTCAAAA--ACTG-ATGA-C-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-T---------------------ATTTC-GCCCTAACTTGCA-GAGAAAA--T--ATGGCAA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACGGG----ATAGAGCTAC---ACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAAC-T-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CCGCATTCATCAGATCTAAATCATTTGGA-C-TCTTTTC-TATT-AGAA--CTCGTAAACAATAG-G-GT-AT-A-GAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTAAAAAA-AAA-C--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTATTTAAA----AAAAATATGTGA-TAATGCAAAA--AATATCC-AAAACGTCTTTCTC---TTG-TTGGAAGA-GAC----A-A-----GTC-ATTTTAAAAAAAAAACA--TTTA-C---TGT-AA----AT-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGT--T-----------------------ATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAAATCTA-ATGAACA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TC-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|6 : GTGTTTCATGAT-A-----TA-TGTTTA-CATTTTG---AACTTTAA-TATCTTTGTCA-CTTTG---------AC-CATAATAT---------TTA-CACA-----------------------CACTA-----T--AT---A---T----------------CA-------------------------TTTTAACACCAAATCCAACATTTTTA--------------------------T-----G-GGGGAAAA--GTTTGA-GAAA--TTAT---G-C-AT-CATT-GCCCTAATTTTAACATG--A-ATTGA-T-GA-T-GTCACATTTTTTGGAA---GCT--TTTTC-GAAATGACTT-T-AAC-CGAT-CAAC--A-A-GGATGAAATTGTAAA-CAG-TA-CTCTA--CTA--CCAACT----ATA-A---A---T------TCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A-----T--GAAA---------------GAA---AA---A-TA---GC-TAAA-GGAGAAACCTTATTTCA-----G-GAGGTATTA-GTA-ATTAC--AG-TTT-GAGAAGA-CAAG--------TAG----------G-GACAGTAT-ATCGATGAGA-AG-ACATGTCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ACCG-GCGG-ACTTTTGACTTT-TC-AATG-A---GTG-AC---T-T-CCAA-CGTTA-----T-TAAGAA-CCT-AATTTC-GTCCTAACTTGTA-AAGAAAAACT--ATGGC-A-T-CT-ACA-AA--CTG-TTTAGTTT--CA--ATAGG----A-GGAGC-A---CACCTCACACTTCATTCGGGC----TTTTTTACAACTGGTT--AGAGAAAACAT-TTT--GACA-GATTGA---TATCA-TA-CAGAAC-ACGATG-GTAAGGCT----------------------TCCGCATTCACAGATTCTAAAACC---------------------TTTTGA-C-TCTTTGCTTTTT-AGGA--TCTTAAAAAGAT-T-A-GT-AT-A-CAG-CCCAAAC-CACAGTACAGA-C-AC-T-GAACCGAACT
gi|7 : ggGTGTTTCATAAT-AATTA-TA-TGGT-A-CATTTTT---ATCTTTAAATATCTTTGTTA-TGT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CATTTTAAACATCAAATCCAACATTTTT---------------------TTTT--------------------------T-----GCTGA-AATA--GTTCTG-GAAA--TTAT--TG-C-AT-CATTAAGCTTAATTGTAACTTA--A-AT-GA-C-AA-T-GTCACAATTT---GAAT--GCC--TTT-C-GAAATGGATT-T-AAC-TGAT-CAAC--AGAAGGCTGAAACTGTAAGATAG-TA-CTCTA--ATA--GCAA-T----ATA-----------------------------A---ATCA-C---C---------------A--A--T----------------------------A---A-T--C-AC-TAAA-GAAAAAGC-TCAT--CA-----G-GAGGT--TC-GTA-AC-AA--AG-TTT-GAGAAGA-CGTG--------CAG----------G-GGCAGTCT-GT-GA-TAGA-AG-ACATGGAAAC--C-CAGGAATA----C-----C-A-A-G--GACTTCAAAA--ACAG-A---------TGACTTTATC-AATGAA---TTG-A--------C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTA
gi|8 : gGTGTTTCATAAT-A-----TAGCGTT-AGCATCTCTTAAAACTTTAAATATCTTTGTTAGCTT-----------AC-CATACCTT---------TTA-TATACATCATAATATGCCATTTTAAAGCACCAAGTCCT--AC---AGTTT----------------TA-------------------------T---------------------TTTT--------------------------T-----G-TGA-AAAAATGTTCGG-GAAAATCTAT--TGAT-GT-CATTAAGCTTAATTGTAACATA--A-AC-GACT-GA-TAGTCACAATTT---GAATGGGCCTGTTT-C-AAAATGGATTAT-AAA-CCAT-CAACCAG-AAGGCTGACGTTA-AAAA-----A-TCCTAT-TAA--CCAA-TTGCCATA-ATATA---T-CCAAATCAGGCGCCT-AAAAATATCA-TC--TCA-GAGGAT----C-A--T--C--TAAA---------------GGA---AA---A-T
gi|9 : tgGTGTTTCATAAA-A-----TA-TGTT-A-CATTTTT---AGCTTTAAATATCTTTGACA-CTT-----------AC-TACACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------
blockSeqs : . CATTA G T G TAA G TCATACTTTTT A ATATCATAT A CATCATAATATGCCATTTTAAAGCACCAAGTCCTACAGTTTTATTTTTT C G AT C AT T A G T . C T C T TA TTG TGG TG TC A G T . CAG A A A T TA AG C TGCC ATATATCCAAATCAGGCGCCT AAT A GTT A A TGTAAAATCCGAAAAGGCAGTATAGTGAT TTT TATACTAT A A C TT TCGAC C AT A G T CA . T T G TTATCTCG CTCGAGATGT C T C T T T AA G TACGCA A AC TA C C TG C T CG TT C . A TCA A AAA CG CA T G T TTTATT A T . CA ACT G C . T C AC T AT GC GGGA TACAT G . A . A C . . T . G . TCCGCGTTCACCAGATCTAAAACC . C CT G . AT C C G TA T . T C A A C C C T C C T TC . . A A A . T A AAATAAAAA G A G TT T T A G T GT A GTTTACCGGT C TAAAAAA TT CTCG TATTCT A T G . A A AT CATA A TAT A TCTCA CCCA G T . . A CTG GATATCG GTC . G G T CTC ATC . ATAGGGC A . . G A . . C C TT G GTC . TA C . T G . . . . . .
blockSeqs : . ATTA . . . . . TG . . . CACCTTATATCATTCTAAACATAAAATCCCACATTTTTATTTTT . . . . . T . A . . . . . . T . T . T . . . . AG A A . . T . . . AAATATACATCAT . . C A . AACAATGAAA . CAATATA . . . . . . . T . . . . . . A . . . G . . . . . . GCAGC . A . C C . . A AC TT C . A . . . C . . . T T T T . CA T G . . . . . . . . . TAC . . . . A . . . . . A . TCCGCATTCATCAGATCTAAATCA . . C A . . C T A G . . . A . . . . . . . . . . . . T . . . . T AAAAA G . G . C T . G T G . TGGTA . TA . AC TA . . . . . . . . A . A T AAT T A . . . . . . . . . . TA . . A C . . . . . . . . T T T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . CACCATATATCATTTTAAACATCAAATCCAACATTTTTTTTTT . . . . . T . A . . . . . . T . . . T . . . . A C A . . T . . . CATTATCATT . . . A . AAAATTGAAA . ATAAT . . . . . . . . . . . . . . A . . . G . . . . . . T . A . C G . . T A TT C . A . . . C . . . T T . T . TA T G . . . . . . . . . TAC . . . . A . . . . . G . TCCGCATTCACAGATTCTAAAACC . . C T . . C A A A . . . C . . . . . . . . . . . . A . . . . A AAA A . T . T T . A C G . TGTA . . . C AA . . . . . . . . A . T C AA T A . . . . . . . . . . CA . . A T . . . . . . . . T T T . . . . . . .
blockSeqs : . . . . . . . . . . . CACTATATATCATTTTAACACCAAATCCAACATTTTTAT . . . . . T . A . . . . . . T . . . C . . . . A C G . . . . . . AATCATCA . . . A . AAACGAAA . ATAT . . . . . . . . . . . . . . T . . . A . . . . . . T . A . C A . . T A TT C . A . . . C . . . T C . T . C T A . . . . . . . . . TT . . . . . . . . . . G . TCC . . C T . . C C A G . . . C . . . . . . . . . . . . . . . . . A . . . A . T T . G T G . AA . . . C AA . . . . . . . . . . . . . . . . . . . . . . . . . TA . . A A . . . . . . . . . T T . . . . . . .
blockSeqs : . . . . . . . . . . . CCCAAATCCAAACATTTTATCTTTA . . . . . T . A . . . . . . T . . . C . . . . A . . . . . . . . AATTCAT . . . . . CATCTAAA . ATA . . . . . . . . . . . . . . G . . . G . . . . . . T . C . C A . . T A T C . A . . . C . . . T T . T . . . . . . . . . . . . . AC . . . . . TCC . . . T . . T A . A . . . . . . . . . . . . . . . A . . . . . . . . T . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . CACCAGATATCATTTTAT . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . AATGAAA . ATC . . . . . . . . . . . . . . A . . . . . . . . . . T . A . . A . . C C . C . . . . . T . . . . T . . . CC . . . . . . .
blockSeqs : . . . . . . . . . . . . . G . . AAT . . . . . . . . . . . . . T . . . . . . . . . . C . A . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : T** A* ** T** C** AATCATCAT****************** A* AACGAAA*************************** G* A** C** T****** T* CA* T**** ** TAC*** **** ** *** G** AAA****** G* CGTA******** TA***** AA***** A**** A* ** TA*** A********** *** T* T***
originalCons : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAGG-T----A-A--A--T--GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC--CACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGATAG-A-GT-AT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAA----AAAAATGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-GAC-T-GT-A-----GTC-ATTTT----AAAAAACA--TTTA-C---TGT-TA----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTAATT----AAGA--AA-TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
finalCons : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTATT--G-CA-T-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GAT--GTCACAGTTT---GAA---GCT--TTTC--GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATAAATCATCAT------------------AAA---ATCA-T---TCA-GAGG-TAACGAAA---------------------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTATG-T-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-AA--A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---TC--C--A-C-TTAT------TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAAT----ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGAGCTAC---ACCTCACACTTCATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGATAGG--GT-AT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTA-TTAAAAAA------TGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-GACCGTA--------GTC-ATTTTA-----AAAACA--TTTA-C---TGTAA-----AG-TGTG-ACGTTATGAGAT-T-G-G-A--TAT----GATAAAAA---TGACGTAATT----AAGAA----TTTNATA-AATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-GTA---TTAT---TCAC-AA----------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAACT-TTTTTTCT---TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATGGAAAACATTCGCCCGGTTTGGTTTTACATTTTATGACGTTGA
Unaligned ( gi|18 ): ACTAAAATATCTTTTACATATTGTATGCAGTTTCTTTGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 22222222222 222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 111 111 22 1111 111111111111111 33333333 111 11111 55555555555555555555555555555555555555555555555555555555 11111 1 11111111 2222222222 11 1111111111 111 1 1111111 1 111 11111 11 1111 111 1111 11 111 7777777777777777777777777777777777777777777777777777777777777777777 11 11111 1 11 2222222222 11 11 333333333333333 3333333 11 11111 2222222 1 11 1111 1 111 4444444444444444 111 2222222 111 11 11111 111 33333333333 111 22 222 1 1 1 1
lowQualScore : 5 33333 5 5 5 888 0 4 77777777777 4 000000000 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 77 5 77 777 5 5 5 0 77 5 5 5 5 999 000 555 77 000 6 6 6 6 9999 7 1 5 5 44 77 5 2222 777777777777777 00000000 000 99999 5 00000000000000000000000000000000000000000000000000000000 5 5 5 66 22222 5 66 0 5 5 66 5 5 5 1 88888888 1111111111 5 22 5 5 5 5 66 5 7777777777 5 777 66 0 2 1 66 5 2 111 33 2 5 9 888 5 888 555 66 0 5 3 5555555 0 55 5 000 33333 1 6 6 6 6 55 6 99 99 4444 111 3 1 6 6 7777 8 11 5 8 0 8 444 6 6 1 6 0000000000000000000000000000000000000000000000000000000000000000000 5 5 00 1 6 99 1 1 44444 6 6 2 6 6 5 5 5 5 3 8 8 11 8 8 8 6 6 6 6666666666 44 1 6 1 99 1 1 6 1 1 33 6 666666666666666 8 9999999 11 77777 0000000 8 6 8 8 8 99 7777 0 444 6 0000000000000000 3 99 8 8 8 444 0 6666666 444 11 8 8 0 8 66666 444 8 11111111111 1 8 6 6 6 111 6 6 6 00 3 9999 6 99 6 6 6 6 6 0 333 3 3 3 3
lowQualScore : . ..... . . . ... . . ........... . ......... . ................................................................................................................................................... . . .. . .. ... . . . . .. . . . . ... ... ... .. ... . . . . .... . . . . .. .. . .... ............... ........ ... ..... . ........................................................ . . . .. ..... . .. . . . .. . . . . ........ .......... . .. . . . . .. . .......... . ... .. . . . .. . . ... .. . . . ... . ... ... .. . . . ....... . .. . ... ..... . . . . . .. . .. .. .... ... . . . . .... . .. . . . . ... . . . . ................................................................... . . .. . . .. . . ..... . . . . . . . . . . . . .. . . . . . . .......... .. . . . .. . . . . . .. . ............... . ....... .. ..... ....... . . . . . .. .... . ... . ................ . .. . . . ... . ....... ... .. . . . . ..... ... . ........... . . . . . ... . . . .. . .... . .. . . . . . . ... . . . .
lowQualScore : 0 11111 0 0 0 888 4 4 22222222222 4 000000000 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 99 7 99 000 0 0 0 7 99 7 7 7 7 444 000 777 99 444 7 7 7 7 3333 2 7 7 7 77 99 7 1111 333333333333333 99999999 000 44444 7 77777777777777777777777777777777777777777777777777777777 7 7 0 99 55555 0 99 0 0 0 99 0 0 0 2 11111111 9999999999 0 66 0 0 0 0 99 0 9999999999 0 000 99 1 5 0 99 0 2 999 22 5 0 4 888 0 888 111 99 0 0 2 2222222 0 11 7 888 33333 0 7 7 7 7 88 7 22 22 2222 777 2 0 7 7 0000 0 00 6 0 8 0 000 7 7 0 7 9999999999999999999999999999999999999999999999999999999999999999999 7 7 00 0 7 22 0 0 33333 7 7 5 7 7 7 7 7 7 3 0 0 00 0 0 8 7 7 7 2222222222 00 0 7 0 22 7 7 7 0 7 33 7 222222222222222 0 2222222 00 00000 4444444 0 0 0 0 0 00 0000 6 000 0 0000000000000000 8 00 0 0 0 000 8 0000000 000 00 0 0 8 0 88888 000 0 00000000000 0 0 7 7 7 777 7 7 7 77 2 3333 7 22 7 7 7 7 7 8 333 3 3 3 3
consensus : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-GT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAG--G--T-A--A----C---GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGA---GCTACACCTCACACTT-CATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGAT-AG--GGTAT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTATT---A------AA-AAATGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-G-------AC-C-GT-AGTC-ATTTTA----AAAAACA--TTTA-C---TGTN-A----AG-TGTG-ACGTTATGAGAT-T-G-GAA-TAT----GATAAAAA---TGACGTAATT----AAGAA---A--TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
Reference ( family-244 ) : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACTTTAAATATCTTTGTCA-CTT-----------AC-CATACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTAT--TG-C-AT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-C-GAAATGGATT-T-AAC-CGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTAT-CTA--CCAA-T----ATA-A---A---T-C---ATCA------T-AAA---ATCA-T---TCA-GAG--G--T-A--A----C---GAAA---------------GAA---AA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CAAG--------CAG----------G-GACAGTAT-GT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAANA--ACCG-ATGA-A-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACAGG----ATGGA---GCTACACCTCACACTT-CATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAACAT-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CC---------------------TTTGGA-C-TCTTTTC-TANT-AGGA--TTCTTAAANGAT-AG--GGTAT-A-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTCAAAAG-GAA-C--AT-C-AANTTTTATA-T-TTAGGAGTGTC-TTATT---A------AA-AAATGTGTGA-TAATGCGAAA--AATATCC-AAAACAGCTTTCTCTTGTTG-TTGGAAGA-G-------AC-C-GT-AGTC-ATTTT-----AAAAACA--TTTA-C---TGTA-A----AG-TGTG-ACGTTATGAGAT-T-G-GA--TAT----GATAAAAA---TGACGTAATT----AAG-A---A--TTTNAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAANTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC-TTTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|1 : GTGTTTCATAATGA-----TA-TGTT-A-CATTTCT---AACTTTAAATATCTTGTTCA-CCT-----------AC-CATACATT---------TTA-CACA-----------------------CACCA-----TATAT---A---TTTTTAAACACCAAATCCAATAT---------------------T---------------------TTTAGTTTT---------------------T-----G-TGA-AAAA--GTTCGG-GAAA--TTATATTG-CTAT-CATTAGCCTTA-TTTTAACATGTAA-AT-GA-T-GAAT-GTCACAGTTT---GAA---ACT--TTT-TTGAAATGGATT-T-AAC-TGATTCAAC--A-AAAGATGAAATTCTATAACAG-TA-CTCTA--CTA--CCAA-T----ATAGA---A---T-C---ATCA------A-AAA---ATCA-T---TCAAGAG--G--T-AGAA----T---GAAA---------------GAA---AA-----TA-T-GC-CTAA-GGAGAAAC-TTAT--CA-----G-GA-GT--TA-GTA-AT-AA--AGTTTT-GAGAA-A-CAAG--------CAG----------G-GACAGTATGGT-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----C-ACC-A--GACGTCAATA--ACCG-ATGA-C-TTTTGA-TTTATCAAATG-A---GTG-AC---TCC-C--ACC-TTA-----CGTGAGAA-CCTAAATTTCGGCCCTAAC-TGCATAATAAAA--TCAATGGCGA-TCCT-ACA-GAG-CTG--TTGGTTT--CA--ACAGG----ATGGAGGCGCGACATCTCACACTT-CAATC-TACTTTTTTTTTTAC-ACTGGTTTGAGAGAAAAACT-TTTTGAACATGATTAATTTTATCG-TAGCAGAACAACGAGAAGTAGGGCTTCGGCATTCACCAGAATCTAAAT---------------------CC---------------------TTTGGATC-TC-TCTC-TAGTAAGGA--TT-TTAAAAGATAAA--GGTATAA-CAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAAGCAAACTCAAATG-AAA-C--ATGCAAATTTTTATA-T-TTAAGAGTGTCTTTATT---A------AAGAAATGTGTGA-TCATGCGAAA--TATTCCC-AAAAGATCTTCCTCTTGGT--TTGGAGGATG-------ACTC-GTAAGTC-ATTTTA----AAAAACA--TTTA-A---CGTGTA----AG-TGTGAACGTTATGAGAT-TGG-GA--TAT----GAT-AAAA---TGACGTAATT----AAGAA---A--TTTGATAAAATTTCAGTTTGTT-TGAT---TCAA-------ATGTCCG---CTTAAGATT-T-TGAAAAT-AGGTTCA-GTTATTTTAT---TTACTATATCA------TAAGTCTATATGGATATC-AT-GTAGTGTTTATATTG-ATAA-AAACGTTTTTTTC--TGTTAATCTAGT--T-CCCTGTG-TTTGT-TCAATTTATAGATTCAAATTAATGTAAACATATATTTATGGAAACACGCCTG
gi|10 : ag-TCAT--CA-----GCGAGGT--TAAGTAGAC-AA--AA-TTTTGAGAAGA-CAGG--------GAG----------C-GTCATTCC--T-GA-TAAA-AGTACATGACAAC--CGCGGGGACAGCAGC-----C-A-ACA--GGCTT--ACA----CA-ATAA-A-T---AACTTTATC-AGTGAA---GTGAAC---T-CGC--A-T-TTA-----T-TGAAAA-CC--AATTT
gi|11 : gaggaagggcgCTTTGTTA-CTT-----------AC-CATACCTT---------TTA-CATA-----------------------CACCT-----T--AT---A---T----------------CA-------------------------T---------------------TCTAAACATAAAATCCCACATTTTTATTTTT-----G-TGA-AAAA--GTTCAG-GAAA--TTAT--TG-T-GT-CATTAg
gi|12 : ATA-C-AT-ATAG---TTACA-GG-ATAA-AAAC-TATTTT-A--T-TT-ATCTATT--T-TCT-GTG-TTTGC-TCAA-T--TAGATTCAa
gi|13 : TTATA-T-TTAGGAGTATC-TTAGT---A------AA------TGTGA--AAT---------ATATCCAAAAACAGCTTCCTCTTGTT--T--GAAGA-
gi|14 : G-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------TCCGCGTTCACCAGATCTAAAACC---------------------TTTGGA-C-TCTCTTC-TA
gi|15 : GTGTTTCATAAT-A-----TA-TGTT-A-CATTTTT---AACATTGAATATCTTTGTTA-CTT-----------AC-CAT
gi|16 : ggAT--TG-C-AT-CATTAGCCTTAATTTTAAGATG--A-AT-GA-T-GA-T-GTCACAGTTT---GAA---GCT--TTT-
gi|2 : AAAACAGATATCTCTA--ATAAGCCAA-T----ATA-A---AATATAC---ATCA------T-AAA---AGCA-TGTTTCG-ACGTTG--T-A--AAATCC---GAAAAGGCAGTATAGTGATGAA---AACA-A-TA-TAGCATAAG-GTAGAGAC-TTAT--CATCGACG-TAAGA--TATGTA-AC-AACAGG-CTT-GTGAGCATCGAGTTATCTCGCAGCTCGAGATGTGCGACAGTAT--T-GA-TAGATAG-A------ATCAAC-CGAGAACG----TACGCAC-A-A-ATAGAC--CAACATGAGTG-AAGA-A-TT--GA----ATC-AATGAATCAGTG-ACAAAT-C-C--A-C-T-A-----T-TGAGAAACCT-AATTGT-GCTCT--CTTA--------------------GA-T-CTTACA-AAACTTG-TTTAGTTTATCA--ACAGAGGGAATAGA---GCTACACCTCACACTT-CATTC-TG
gi|2 : GA-C-TCTTTC---AGC-ATGA--TTCTTAAACGAT-GGTAGTTAT-A-TAGCCCCAAAC-T-CAGT-GCGACC-AC-T-ggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|2 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtAGA-CCAC-TTGAA-CGA-CTCAAAAGCGAA-CTCAT-C-AA-TTTTATAATATTAGGAGTGTC-TTATT---T------AA-AAATGTGTGAATAATGCGAAATTAACA--C-AAAACAGCTTTCTCTGGTTGTTTGGAAG--G-------AT-TGGT-A-TC-ATTTT-----AGAACCGTTTTTA-CTCGTGTT-ATTCTAG-TATGTACGACTCGAGATGT-GAGAATTATCATAGGTACAAATATTGACGTAATTCTCAAAG-ACCCA--TTTGAC-TAACATTAG-TTA-TATGATCTGTCAAGATATCGGTATCCGGTCTTTACA--TGTGTGAAAATAA-GTTCATGCTC--TCATATCTCAC-A----ATAGGGCCAAATCTA-ATAGATA-CGATAGTAG---TTATA-TGCATAACAAAA-TCTCTTGCGTC-TC-ATCTGATTAT-CCC-ACGTTTTGTGTCAA-ctttgaactacgaccatccaggtgccaagaccacttgaacgactcaaaagcgaactcatcaattttataatattaggagtgtcttatttaaaaatgtgtgaataatgcgaaattaacacaaaacagctttctctggttgtttggaaggattggtatcattttagaaccgtttttactcgtgttattctagtatgtacgactcgagatgtgagaattatcataggtacaaatattgacgtaattctcaaagacccatttgactaacattagttatatgatctgtcaagatatcggtatccggtctttacatgtgtgaaaataagttcatgctctcatatctcacaatagggccaaatctaatagatacgatagtagttatatgcataacaaaatctcttgcgtctcatctgattatcccacgttttgtgtcaaatccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : aaaacagatatctctaataagccaatataaaatatacatcataaaagcatgtttcgacgttgtaaaatccgaaaaggcagtatagtgatgaaaacaatatagcataaggtagagacttatcatcgacgtaagatatgtaacaacaggcttgtgagcatcgagttatctcgcagctcgagatgtgcgacagtattgatagatagaatcaaccgagaacgtacgcacaaatagaccaacatgagtgaagaattgaatcaatgaatcagtgacaaatccactattgagaaacctaattgtgctctcttagatcttacaaaacttgtttagtttatcaacagagggaatagagctacacctcacacttcattctgggggtttggtttgttttttttattgtggtttcttttctttgagctcctaatggttagagaaaacatttgttgtgtggcggacactcagtctctgacgccaactttctatacaaggtgacaacaaaggtagcttcacatgccggcttccgtctaatcacagacaatctaaaaacaggacccctattagtgactctttcagcatgattcttaaacgatggtagttatatagccccaaactcagtgcgaccactctttgaactacgaccatccaggtgccaTGTTTCATAAT-ACATTATA-TGAT-T-CATTTTA---AACTTTGATT-TCTTTGTCA-CTTTCATACTTTTTACACATACCTTATATCATATTTAACACA-----------------------C-CCA-----A--ATCCAA---A----------------CA-------------------------T---------------------TTTA--------------------------TCTTTAG-TGA-AAA---GTTCGGCGAAA--TT-----G-C-ATTCATTAGCCTTAATTTTAA-ATG--ACAT-GA-TTGA---GTCTCAGTTT---GAA---GCT--TTT-T-GAAATGGATC-TGAACTCGAT-CA-C--A-AAGG-TGCA-TTGTAAAACAG-TA-CTCT-T-CTA--CCAA-T----ATA-C---A---T-T---ATCA------TTCAA---ATCAAT---TCA-GAG-----T-A--A----CAATGAAA---------------GAA---AA---A-TAAT-GC-TAAAAGGAGAAAC-TTAT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TT--GAGAAGA-CAAG--------CAG----------G-GCCAGTAT-TG-GA-GAGA-AG-ACATGGCATC--C-CGGGAAGA----T-----TAA-A-A--GACTT--AGA--ACCGCCTGACG-TTTTGACTTTATC-AATG-A---GTG-AC---T-C-C--ATT-TTATTTATT-TGAGAATCCT-AATTTC-G-CCTAACTTGC--AAGAAAA--T--ATGGCGACT-CT-ATACAA--CTGTTTTGGTTT--CAGCACAGG----ATGGA---GCTACA---TAC-CTTGCATTC-TGC----ATTTTTAC-ACTGGTT--AGAAAAAACATCTTTTGGACA-GATTAA---TATCGTTA-CA-AAC-ACGAAGAGTTAGGCA----------------------T---------------------CC---------------------atccataccaaatagtttctctctcattaaagttaacgtcaagtatagatatatttacagacgaacacacc
gi|3 : a----------------------T---------------------CC---------------------TTTCGA-CCTCTTTT--TAAT-AGGAATTCCTTAAATGAT-AG--GGTAT-ATCAGCCC--AACACACAGT-CA-A-C-ACCT-GAA-CGAAA--AAAAG-GGATC--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTATT---A------AA------TGTGA-TAATGCGATA--AA-ATTC-AAAAAAATCGTCTACTCTTG-TTGGAAGA-AGACGTTTAC-C-GG-TGTCCATTT-------AGAACA--TTTAAC---TGTT-A----AGATGTG-ACGTTATGAGAT-T-G-GAA-TAT----GAT-AAAA---TGACGTAATT----AAG-A---AATTTTTAT-AAATTTCAG-TTG-T-TGAT---TC-A-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAACTCTA-ATGGATA-C-AT-GTAG---TTATA-TG-ATAC-AAACTTTTTTTTC--T-TT-ATCTAGT--TCCCC-GTG-TTTGT-TC-A-TTATAGATTCAacatcttaccccgggcattcaccaagatcttcaatcctttcgacctctttttaataggaattccttaaatgatagggtatatcagcccaacacacagtcaacacctgaacgaaaaaaagggatcatcaaattttatatttaggagtgtcttattaaatgtgataatgcgataaaattcaaaaaaatcgtctactcttgttggaagaagacgtttaccggtgtccatttagaacatttaactgttaagatgtgacgttatgagattggaatatgataaaatgacgtaattaagaaatttttataaatttcagttgttgattcaatgtccgcttaaatttgaaaataaggttcagtattattcacaacaactctaatggatacatgtagttatatgatacaaacttttttttctttatctagttccccgtgtttgttcattatagattca
gi|4 : atgtttcataatacattatatgattcattttaaactttgatttctttgtcactttcatactttttacacataccttatatcatatttaacacacccaaatccaaacattttatctttagtgaaaagttcggcgaaattgcattcattagccttaattttaaatgacatgattgagtctcagtttgaagctttttgaaatggatctgaactcgatcacaaaggtgcattgtaaaacagtactcttctaccaatatacattatcattcaaatcaattcagagtaacaatgaaagaaaaataatgctaaaaggagaaacttatcaggaggttagtaataaagttgagaagacaagcagggccagtattggagagaagacatggcatcccgggaagattaaaagacttagaaccgcctgacgttttgactttatcaatgagtgactccattttatttatttgagaatcctaatttcgcctaacttgcaagaaaatatggcgactctatacaactgttttggtttcagcacaggatggagctacataccttgcattctgcatttttacactggttagaaaaaacatcttttggacagattaatatcgttacaaacacgaagagttaggcatccacatcttaccccgggcattcaccaagatcttcaaGTGTTTCATA------------TGTT-A-CATTTTT---AGCTTTAAATATCTTTGTCA-CTT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----G--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------T-----G-TGA-AAAA--GTTTGG-GAAA--GTAT--TG-C-AT-CATTAGCCTTAATTTTAACATG--A-AT-GA-T-GA-T-ATCACAGTTT---GAA---GCT--TTT-T-GAAATGGATT-T-AAC-TGAT-CAAC--A-AAGGATGAAATTGTAAAACAG-TA-CTCTATACTA--CTAA-T----ATA-A---A---T-C---ATCA--------AAA---ATTA-T---TCA-GAG--G--TAA--A----C---GAAA---------------GAATTTAA---A-TA-T-GC-TAAA-GGAGAAAC-TTAT--CA-----G-GAGAT--TA-GTA-AC-AA--AG-TTT-GAGAAGA-CATG--------CAG----------G-GACATTAT-GT-GA-GAGA-AG---AGGGCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ATCG-ATGC-A-TTTTGTCTTTATC-AATGAA---GTG-AC---T-C-C--A-C-TTA-----C-TGAGAA-CCT-AATTTC-TCCCTAACTTGCA-AAGAAAA--T--ATGGCGA-T-CA-ACA-GA--TTG-TTTGGCTT--CA--ACAGG----ATGGA---GCT-TACCTCACACTT-AATTC-TGC----TTTTTTGC-ACTGATT--AGAGAAAACAT-TTGTGGACA-GATTAA---TATCG-TA-CAAAAC-ACGAAGAGTAAG-----------------------------------------------CC---------------------TTTGGA-C-TCTTTTC-TATT-AGGA--TTCTTAAAAGAT-AG--AGTAT-A-CAGCCCAAAAC-CACGGT-CAGA-C-GC-T-GAA-CGAACTCAAAAC-GAA-C--AT-C-AATTTTTACA-T-TTAGGAGTGTC-TTATT---AAAAAATAA-AAATGTGTGA-TAATGCTAAA--AATATCC-AAATCAGCTTTCTCTTGTTG-TTGGAAGA-G-------AC-T-GT-AGTC-ATTT-------AAAACA--TTTA-C---TGTA-A----AA-TGTG-ACGTTATGAGAT-T-G-GA--TAT----GATAAAAA---TAACGTTATC----AAGAA---A--TTTTAT-AAATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAGTAAGTATCA-G-CA--TTAT---TCAC-A----A------CAATTCTA-ATAGATA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TT-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|5 : AG--G--T-A--AAAT-T---GAAA---------------GAA---AATATACTA-T-TC-TAAA-GGAGAAAC-TTGT--CA-----G-GAGGT--TA-GTA-AT-AA--AG-TAT-GGGAAGA-CAGG--------CAG----------G-GACAGTAT-GT-GA-GAAA-AG-ACATGGCATC--C-CGGGAAGA----T-----T-A-C-A--GACTTCAAAA--ACTG-ATGA-C-TTTTGACTTTATC-AATGAA---GTG-AC---T-C-C--A-C-T---------------------ATTTC-GCCCTAACTTGCA-GAGAAAA--T--ATGGCAA-T-CT-ACA-GA--CTG-TTTGGTTT--CA--ACGGG----ATAGA---GCTACACCTCACACTT-CATTC-TGC----TTTTTTAC-ACTGGTT--AGAGAAAAC-T-TTTTGGACA-GATTAA---TATCG-TA-CAGAAC-ACGAAGAGTAAGGCT----------------------T---------------------CCGCATTCATCAGATCTAAATCATTTGGA-C-TCTTTTC-TATT-AGAA--CTCGTAAACAAT-AG--GGTAT-A-GAGCCCCAAAC-CACAGT-CAGA-C-AC-T-GAA-CGAACTAAAAAA-AAA-C--AT-C-AAATTTTATA-T-TTAGGAGTGTC-TTATTTAAA------AA-AAATATGTGA-TAATGCAAAA--AATATCC-AAAACGTCTTTCTC---TTG-TTGGAAGA-G-------AC-A----AGTC-ATTTTAAAAAAAAAACA--TTTA-C---TGTA-A----AT-TGTG-ACGTTATGAGAT-T-G-GA--TAT----GATAAAAA---TGACGT--T-------------------------ATTTCAG-TTG-T-TGAT---TCAA-------ATGTCCG---CTTAAA--T-T-TGAAAATAAGGTTCA-G-TA--TTAT---TCAC-A----A------CAAATCTA-ATGAACA-C-AT-GTAG---TTATA-TG-ATAA-AAAC--TTTTTTC--T-TC-ATCTAGT--T-CCC-GTG-TTTGT-TCAA-TTATAGATTCAA---AACGT-AACATATA-TTAT-GAAACAC-CCTGTA
gi|6 : GTGTTTCATGAT-A-----TA-TGTTTA-CATTTTG---AACTTTAA-TATCTTTGTCA-CTTTG---------AC-CATAATAT---------TTA-CACA-----------------------CACTA-----T--AT---A---T----------------CA-------------------------TTTTAACACCAAATCCAACATTTTTA--------------------------T-----G-GGGGAAAA--GTTTGA-GAAA--TTAT---G-C-AT-CATT-GCCCTAATTTTAACATG--A-ATTGA-T-GA-T-GTCACATTTTTTGGAA---GCT--TTTTC-GAAATGACTT-T-AAC-CGAT-CAAC--A-A-GGATGAAATTGTAAA-CAG-TA-CTCTA--CTA--CCAACT----ATA-A---A---T------TCA------T-AAA---ATCA-T---TCA-GAG--G--T-A--A----T---GAAA---------------GAA---AA---A-TA---GC-TAAA-GGAGAAACCTTATTTCA-----G-GAGGTATTA-GTA-ATTAC--AG-TTT-GAGAAGA-CAAG--------TAG----------G-GACAGTAT-ATCGATGAGA-AG-ACATGTCATC--C-CGGGAAGA----T-----C-A-A-A--GACTTCAAAA--ACCG-GCGG-ACTTTTGACTTT-TC-AATG-A---GTG-AC---T-T-CCAA-CGTTA-----T-TAAGAA-CCT-AATTTC-GTCCTAACTTGTA-AAGAAAAACT--ATGGC-A-T-CT-ACA-AA--CTG-TTTAGTTT--CA--ATAGG----A-GGA---GC-ACACCTCACACTT-CATTCGGGC----TTTTTTACAACTGGTT--AGAGAAAACAT-TTT--GACA-GATTGA---TATCA-TA-CAGAAC-ACGATG-GTAAGGCT----------------------TCCGCATTCACAGATTCTAAAACC---------------------TTTTGA-C-TCTTTGCTTTTT-AGGA--TCTTAAAAAGAT--T--AGTAT-A-CAG-CCCAAAC-CACAGTACAGA-C-AC-T-GAACCGAACT
gi|7 : ggGTGTTTCATAAT-AATTA-TA-TGGT-A-CATTTTT---ATCTTTAAATATCTTTGTTA-TGT-----------AC-CATACTTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CATTTTAAACATCAAATCCAACATTTTT---------------------TTTT--------------------------T-----GCTGA-AATA--GTTCTG-GAAA--TTAT--TG-C-AT-CATTAAGCTTAATTGTAACTTA--A-AT-GA-C-AA-T-GTCACAATTT---GAAT--GCC--TTT-C-GAAATGGATT-T-AAC-TGAT-CAAC--AGAAGGCTGAAACTGTAAGATAG-TA-CTCTA--ATA--GCAA-T----ATA-A---A---T-C---ACCA--------ATA---ATCA---------------------------------------------------------------------C-TAAA-GAAAAAGC-TCAT--CA-----G-GAGGT--TC-GTA-AC-AA--AG-TTT-GAGAAGA-CGTG--------CAG----------G-GGCAGTCT-GT-GA-TAGA-AG-ACATGGAAAC--C-CAGGAATA----C-----C-A-A-G--GACTTCAAAA--ACAG-A---------TGACTTTATC-AATGAA---TTG-A--------C--A-C-TTA-----T-TGAGAA-CCT-AATTTC-GCCCTA
gi|8 : gGTGTTTCATAAT-A-----TAGCGTT-AGCATCTCTTAAAACTTTAAATATCTTTGTTAGCTT-----------AC-CATACCTT---------TTA-TATACATCATAATATGCCATTTTAAAGCACCAAGTCCT--AC---AGTTT----------------TA-------------------------T---------------------TTTT--------------------------T-----G-TGA-AAAAATGTTCGG-GAAAATCTAT--TGAT-GT-CATTAAGCTTAATTGTAACATA--A-AC-GACT-GA-TAGTCACAATTT---GAATGGGCCTGTTT-C-AAAATGGATTAT-AAA-CCAT-CAACCAG-AAGGCTGACGTTA-AAAA-----A-TCCTAT-TAA--CCAA-TTGCCATA-ATATA---T-CCAAATCAGGCGCCT-AAAAATATCA-TC--TCA-GAG--GATC-A--T----C---TAAA---------------GGA---AA---A-T
gi|9 : tgGTGTTTCATAAA-A-----TA-TGTT-A-CATTTTT---AGCTTTAAATATCTTTGACA-CTT-----------AC-TACACCTT---------TTA-CACA-----------------------CACCA-----T--AT---A---T----------------CA-------------------------T---------------------TTTA--------------------------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATGGAAAACATTCGCCCGGTTTGGTTTTACATTTTATGACGTTGA
Unaligned ( gi|18 ): ACTAAAATATCTTTTACATATTGTATGCAGTTTCTTTGA