lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111
lowQualScore : 1 666666666 111 777 1 88888888888888 22 2222222222 111 222222222222222222222222222222222222222222222222222222222222222222 3333333 1 1 11 1 11 1 1 1 44444 333 111 2222222222222222222222222222222 11 1 1111
lowQualScore : 7 4444 3 333333333 111 0 9 8 000 4 0 66666666666666 22 3333333333 666 3 999999999999999999999999999999999999999999999999999999999999999999 0 8888888 0 0 22 0 33 5 3 5 4 66666 111 999 0000000000000000000000000000000 4 6 7 11 1 0 99 1 66 9999 5 3333
lowQualScore : . .... . ......... ... . . . ... . . .............. .. .......... ... . .................................................................. . ....... . . .. . .. . . . . ..... ... ... ............................... . . . .. . . .. . .. .... . ....
lowQualScore : 3 9999 6 000000000 777 8 2 2 000 0 5 55555555555555 00 7777777777 777 7 777777777777777777777777777777777777777777777777777777777777777777 2 0000000 0 0 55 0 88 0 3 0 0 55555 888 333 7777777777777777777777777777777 3 7 3 22 0 8 22 7 99 3333 2 4444
consensus : CCAATCTCTCACCAGAGGGCGTTG-T-ACGCTACNC--CCC-CA---ACACCTCTGTTATCGTCTGGATT---ACAAGANTNTTGTAAAACGTNTGGTGTTTTTTTTTTTTTT-ATATTTACAGAATTTTTATCGTTATCATATTAAAAAC--AAAGACTTCT-C-TTTTGGGCATATTNTTGGGTATT-----------------------AAAAC---A-ATT-ACGATAAAACAA-ATTCAA--TTT---ANTCTTTAGATA----N--TTACCA-ATCGT-CATGAAATTTTA-TGTGTG--ACCAGATGACATATAGAT-GAACATACAGNGACGATTAATTTCGGTAA-ATTCATCGGTAATTTCGGTCAC-----------TTTT---------CGGTAATTTCGGTGATTCTACGTACCCGACCTACTTCGCAGACGATAACAGAGGTGT--AAGTGAAG--CTTGCGTANCG-CGCCCTCT---GGTGAGAGATTGG
Reference ( gi|2 ) : CCAATCTCTCACCCGAGGGCGTTG-T-ACGCTATATAATCC-CA---ACACCTCTGTTATCATCTGAATTTATACAAAAATCTTGTAAAACGTACAGT---------TTTTTTTGTATTTACAGAATTTTTATCGTTATCATATTAAAAATGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----------------------AAAACAAAAAACT-ACAATAAAACAACATTCAAGTTTTCAAACTCTTTAGATA----T--TTACCA-ATCGT-CTCGAAATTTTA-TGTGTG--ACCAGATGACATATATAT-GAAGATACAGTGAGG--CAATTTCGGTCA-ATTTATCAGTAATTTCAGTCCCT----------TTTT---------CGGTAATTTCGATGATTCTATGTACCGGACCTACTTTACAGACGATAACAGAGGTGT--AAGTGAAG--CTTGCGTAACA-CTCCCTCT---AGTGAGAGATTGG
gi|1 : CCAATCTCTCACCAGAGGGCGTTG-T-ACACTACAC---TC-CA---AC--------------CTAGATT---ACAAAAATATTGTAAAATGTA-GGTGTTTTTTTTTTTTTTTATATTTACAGATTTTTTATCGTTATCATATTAAAAACGTAAAAACTTCTTC-TGTTGGGCATATTGTTGGGTATTTTTTAAAAACGATAAACTACAATAAAAC--AACATT-----TAAAA----ATTCA--TTTT----TTTTTTAGATAGGCCTAGTTACCCTAGCGT-CATGAAATTTTA-TGTGTG--ACCAGATAATATATAGATGGAACATACAGTGACA--TAATTTCGGTAACATTTTTTGGTAATTTCGGTGA------------TAAT---------CGGTAATTTCGGTGATTCTACGTACCTTTCCTACTTTGCAGACGATAACAGAGGTGT--AAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATT
gi|12 : CCAATCTCTCACCAGAGGGCGTTG-T-ACGTTATA----CC-CA---A
gi|16 : aCCAATCTCTCACCAGAGGGCGTTG-T-ACGTTA
gi|14 : aCCAATATCTCACCAGAGGGCGTTG-T-ACGCTA
gi|3 : CATTCTCTCACCAGAGGGCGTTG-T-ACGTTTTCT--CTT-CA---ACACCTCTGTTATCGTCTAAATT---ACAAGATTTTTGTAAAACGTTTAGT---------TTTTTA-ATATTTACAGAATTTTTATCGTTATCATATTAAAAACTGAAAGACTTAT-CTTTTTTGGCATATTATTGGGTATT-----------------------AAAACGATAAACT-ACAATTAAACAACATTCAActcccca
gi|4 : aaaaaaaaaaaaaaacaacaaaaaacaaaaaaaaaaaaacccaaaaaaaccccaacaaaccatatgtatacatattcaacatgtccataactgtagaaagtctggggagttgtgttcaagagaaattgattaggtgcactagctCAATCTCTCACCAGAGGGCG-CG-TCACGC
gi|8 : tgaacatacagagatgattaatttcggtaattatcagtaatttcggtcactgtttggaaaattttagggataagcggtaatttcggtgattctatgtaccggacctaacattggtgtaagaaaagcacatCAATCTCTCACCAGAGAGCGCAT-T-ACGC
gi|15 : aatctctcaccagagggcgttgtacgctacactccaacaagaaagtgaagcttCAATCTCTCACCAGAGGGCGCCGTT-ACGC
gi|1 : aggcttAATCTCTCACCAGAGGGCG-------CGTTACGCAAGCTTCACTTACACCTCTGTTATCGTCTG
gi|6 : ccaatctctcaccagagggcgttgtacactacactccaacctagattacaaaaatattgtaaaatgtaggtgtttttttttttttttatatttacagattttttatcgttatcatattaaaaacgtaaaaacttcttctgttgggcatattgttgggtattttttaaaaacgataaactacaataaaacaacatttaaaaattcattttttttttagataggcctagttaccctagcgtcatgaaattttatgtgtgaccagataatatatagatggaacatacagtgacataatttcggtaacattttttggtaatttcggtgataatcggtaatttcggtgattctacgtacctttcctactttgAATCTCTCACA-GAGGGCGCGT-T-ACGCAAGCT--TCA-CT---ACACCTCTG-TATCGTCTG
gi|8 : aattcacagtggctttcccatttnnnnnnnnnnnnnnnnnnnnnnnnncgcgaactacttcgAATCTCTCACCAGAGGGCGTTG-T-ACGCTAC---ACTC-CA---ACA
gi|5 : TTTTAATATTTACAGAATTTTTATCGTTATTATA-------------GACTTCT-C-TTTTGGGCACATTTTTAGGTATT---------------------------------ATTGACGATAA------ATTC--------------TTTAGATA----G--TTACCA-CTCGT-CATGAAATTATA-TATGTG--ACCAGATGACATATAGAT-Gagaaagtgaagcttgcgtaatgcgctctctggtgagagattg
gi|9 : TAAATCAA---TCAAAGTTTCAAAATCCTTAGATA----G--TTACCA-ATCGTGCATGAAATTTTATTGTTTGGAACAGGGTGACATGT
gi|11 : ACTCTTTAGATA----T--TTACCA-ATCGT-CTCGAAATTTAT-TGTGTG--AACAGATGACATATA
gi|4 : T-GAACATACAGAGATGATTAATTTCGGT-A-ATT-ATCAGTAATTTCGGTCACTGTTTGGAAAATTTTAGGGATAAGCGGTAATTTCGGTGATTCTATGTACCGGACC--------------TAACATTGGTGT--AAGAAAAGCACATGCGTGACG-CGCCCTCT---GGTGAGAGATTG
gi|6 : A-ATTCA-CAGTGGCTT---TCCCA----------TTTN---------NNNNNNNNNNNNNNNNNNNNNNNNCGCGAACTACTTCGCAGACGATA-CAGAGGTGT--A-GTGAAG--CTTGCGTAACG-CGCCCTCT----GTGAGAGATT
gi|10 : TTTCCAGATGTTAACAGAGATGT--AGGTGAAG--CTTGCATATTG-CACCTTCT---AGTG
gi|3 : gtacctcctggttgtAGACGATAACAGAGGTGTTGAAGAGAAA-----ACGTACAA-CGCCCTCT---GGTGAGAGAATG
gi|8 : aaaaaaaaaaaaaaacaacaaaaaacaaaaaaaaaaaaacccaaaaaaaccccaacaaaccatatgtatacatattcaacatgtccataactgtagaaagtctggggagttgtgttcaagagaaattgattaggtgcactagct--AAGTGAAG--CTTGCGTAATG-CGCTCTCT---GGTGAGAGATTGaaattacaagatttttgtaaaacgtttagttttttaatatttacagaatttttatcgttatcatattaaaaactgaaagacttatcttttttggcatattattgggtattaaaacgataaactacaattaaacaacattcaa
gi|13 : aatctctcaccagagggcgttgtacgctacactccaacaagaGAAG--CTTGCGTAACG-CGCCCTCTGGCGGTGATAGAATG
gi|15 : AGG--CTTGCGTAACGGCGCCCTCT---GGTGAGAGATTG
gi|1 : GTGTACAA-CGCCCTCT---GGTGAGAGATTGG
gi|8 : GCGTACAA-CGCCCTCT---GGTGAGAGATTtacactccaacctagattacaaaaatattgtaaaatgtaggtgtttttttttttttttatatttacagattttttatcgttatcatattaaaaacgtaaaaacttcttctgttgggcatattgttgggtattttttaaaaacgataaactacaataaaacaacatttaaaaattcattttttttttagataggcctagttaccctagcgtcatgaaattttatgtgtgaccagataatatatagatggaacatacagtgacataatttcggtaacattttttggtaatttcggtgataatcggtaatttcggtgattctacgtacctttcctactttgcagacgataacagaggtgtaagtgaagcttgcgtaacgcgccctctggtgagagatt
gi|12 : CGTACAA-CGCCCTCT---GGTGAGAGATTGGtacactccaacaagaaagtgaagcttgcgtaatgcgctctctggtgagagattg
gi|16 : aCGTACAA-CGCCCTCT---GGTGAGAGATTGGttatacccaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): AAAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGATTCAAATATTGCAACCCATCAATTTTATCTACGG
Alignments
lowQualScore : 1111 222 777777777777 11 444 1 1 999999999999999999999999999999999999999999999999999999999999 2222222 11 1 33 11 1 99999999999999999999999999
lowQualScore : 3333 2 3 3 11 333 0 1 1 666666666666 44 3 111 0 0 1 111111111111111111111111111111111111111111111111111111111111 4444444 8 8 1 8 11 0 1 3 00 33 2 3 2 0 6 22222222222222222222222222 0 6 3 99 1 0 1 66 1 5 9999
lowQualScore : .... . . . .. ... . . . ............ .. . ... . . . ............................................................ ....... . . . . .. . . . .. .. . . . . . .......................... . . . .. . . . .. . . ....
lowQualScore : 8888 5 2 7 33 333 7 0 0 333333333333 00 2 555 0 0 0 555555555555555555555555555555555555555555555555555555555555 0000000 0 0 4 0 00 0 0 7 77 22 0 2 0 0 5 00000000000000000000000000 8 5 2 66 0 8 7 99 0 0 0000
consensus : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAAT---TACAAAAATNTTGTAAAACGTACGG--------TTTTTTTN-ATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AAAACGA-AAAC----T-ACAATAAAACAACA--TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAA-TTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCNGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
Reference ( family-2429 ) : CCAATCTCTCACCAGAGGGCGTTGTACGCTACNC--CCCCAACACCTCTGTTATCGTCTGGAT---TACAAGANTNTTGTAAAACGTNTGGTGTTTTTTTTTTTTTT-ATATTTACAGAATTTTTATCGTTATCATATTAAAAAC--AAAGACTTCT-C-TTTTGGGCATATTNTTGGGTATT-----AAAAC----AAT----T-ACGATAAAACAA-A--TTCAA-------TTT----ANTCTTTAGATAN------TTACCA-ATCGT-CATGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGNGACGATTAATTTCGGTAA-ATTCATCGGTAA-TTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCCGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTANCG-CGCCCTCT---GGTGAGAGATTGG
gi|1 : CCAATCTCTCACCAGAGGGCGTTGTACACTACAC--TCC-AAC--------------CTAGAT---TACAAAAATATTGTAAAATGTA-GGTGTTTTTTTTTTTTTTTATATTTACAGATTTTTTATCGTTATCATATTAAAAACGTAAAAACTTCTTC-TGTTGGGCATATTGTTGGGTATTTTTTAAAAAC----GATAAACT-ACAATAAAACAACA--TTTAAAAATTCATTT----TTTTTTTAGATAGGCCTAGTTACCCTAGCGT-CATGAAATTTTA-TGTGTG--ACCAGATAATATATAGATGGAACATACAGTGACA--TAATTTCGGTAACATTTTTTGGTAA-TTTCGGTGA--T-AAT-------------------CGGTAATTTCGGTGATTCTACGTACCTTTCCTACTTTGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATT
gi|10 : TTC-CAGATGTTAACAGAGATGTAGGTGAAG--CTTGCATATTG-CACCTTCT---AGTG
gi|11 : gtacctcctggttgtt----ACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTAT-TGTGTG--AACAGATGACATATA
gi|12 : CCAATCTCTCACCAGAGGGCGTTGTACGTTATAC--CC
gi|13 : aGAAG--CTTGCGTAACG-CGCCCTCTGGCGGTGATAGAATGaa
gi|14 : CCAATATCTCACCAGAGGGCGTTGTACGCTACTC--CCC
gi|15 : AGG--CTTGCGTAACGGCGCCCTCT---GGTGAGAGATTGa
gi|16 : CCAATCTCTCACCAGAGGGCGTTGTACGTTA
gi|2 : aCCAATCTCTCACCCGAGGGCGTTGTACGCTATATAATCCCAACACCTCTGTTATCATCTGAATTTATACAAAAATCTTGTAAAACGTACAG--------TTTTTTTT-GTATTTACAGAATTTTTATCGTTATCATATTAAAAATGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AAAACAAAAAAC----T-ACAATAAAACAACA--TTCAAG------TTTTCAAACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTTA-TGTGTG--ACCAGATGACATATATATG-AAGATACAGTGAGG--CAATTTCGGTCA-ATTTATCAGTAA-TTTCAGTCCCTT-TTT-------------------CGGTAATTTCGATGATTCTATGTACCGGACCTACTTTACAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACA-CTCCCTCT---AGTGAGAGATTGG
gi|3 : CATTCTCTCACCAGAGGGCGTTGTACGTTTTCT--CTTCAACACCTCTGTTATCGTCTAAAT---TACAAGATTTTTGTAAAACGTTTAG---------TTTTTTA-ATATTTACAGAATTTTTATCGTTATCATATTAAAAACTGAAAGACTTAT-CTTTTTTGGCATATTATTGGGTATT-----AAAACGATAAAC----T-ACAATTAAACAACA--TTCAA-------
gi|4 : aaaaaaaaaaaaaaacaacaaaaaacaaaaaaaaaaaaacccaaaaaaaccccaacaaaccatatgtatacatattcaacatgtccataactgtagaaagtctggggagttgtgttcaagagaaattgattaggtgcactagctTG-AACATACAGAGATGATTAATTTCGGTAA---TTATCAGTAA-TTTCGGTCAC-TGTTTGGAAAATTTTAGGGATAAGCGGTAATTTCGGTGATTCTATGTACCGGACC--------------TAACATTGGTGTAAGAAAAGCACATGCGTGACG-CGCCCTCT---GGTGAGAGATTG
gi|5 : TTTTA-ATATTTACAGAATTTTTATCGTTATTATA-------------GACTTCT-C-TTTTGGGCACATTTTTAGGTATT-----A----------T----TGACGATAAA----------------------------TTCTTTAGATAG------TTACCA-CTCGT-CATGAAATTATA-TATGTG--ACCAGATGACATATAGATG-
gi|6 : A-ATTCA-CAGTGGCTTTC--CCA--T-TTN-------------------NNNNNNNNNNNNNNNNNNNNNNNNCGCGAACTACTTCGCAGACGATA-CAGAGGTGTA-GTGAAG--CTTGCGTAACG-CGCCCTCT----GTGAGAGATT
gi|8 : AATCTCTCACCAGAGGGCGTTGTACGCTACA---CTCCAACA
gi|8 : AAGTGAAG--CTTGCGTAATG-CGCTCTCT---GGTGAGAGATTGagaaagtgaagcttgcgtaatgcgctctctggtgagagattg
gi|9 : aatctctcaccagagggcgttgtacgctacactccaacaagaATCAATCAA-AGTTTCAA--------------AATCCTTAGATAG------TTACCA-ATCGTGCATGAAATTTTATTGTTTGGAACAGGGTGACATGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGATTCAAATATTGCAACCCATCAATTTTATCTACGG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 111 222 6666666666666 1 1 33333333333333 1 1111 6666666666666666 222222 11 1 11 22 11111111111111111111111111
lowQualScore : 222 2 3 3 333 1 3333333333333 1 3 555 0 0 0 66666666666666 0 6 8 7777 8888888888888888 333333 8 8 1 8 11 0 3 88 00 0 88888888888888888888888888 0 1 3 99 1 0 1 66 5 9999
lowQualScore : ... . . . ... . ............. . . ... . . . .............. . . . .... ................ ...... . . . . .. . . .. .. . .......................... . . . .. . . . .. . ....
lowQualScore : 888 5 2 7 333 0 3333333333333 0 2 222 0 0 2 88888888888888 0 0 0 0000 6666666666666666 000000 0 0 4 0 00 0 7 33 77 7 00000000000000000000000000 7 0 2 66 0 8 7 99 0 0000
consensus : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AAAAC-GATAAACT-ACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
Reference ( family-2429 ) : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AAAAC-GA-AAACT-ACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCNGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
gi|1 : CCAATCTCTCACCAGAGGGCGTTGTACACTACAC--TCC-AAC--------------CTAGATT---ACAAAAATATTGTAAAATGTA-GGTGTTTTTTTTTTTTTTTATATTTACAGATTTTTTATCGTTATCATATTAAAAACGTAAAAACTTCTTC-TGTTGGGCATATTGTTGGGTATTTTTTAAAAAC-GATAAACT-ACAATAAAACAA-CA----TTTAAAAATTCATTT----TTTTTTTAGATAGGCCTAGTTACCCTAGCGT-CATGAAATTTTA-TGTGTG--ACCAGATAATATATAGATGGAACATACAGTGACA--TAATTTCGGTAACATTTTTTGGTAATTTCGGTGA--T-AAT-------------------CGGTAATTTCGGTGATTCTACGTACCTTTCCTACTTTGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATT
gi|10 : TTC-CAGATGTTAACAGAGATGTAGGTGAAG--CTTGCATATTG-CACCTTCT---AGTG
gi|11 : gtacctcctggttgtt----ACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTAT-TGTGTG--AACAGATGACATATA
gi|12 : CCAATCTCTCACCAGAGGGCGTTGTACGTTATAC--CC
gi|13 : aGAAG--CTTGCGTAACG-CGCCCTCTGGCGGTGATAGAATGaa
gi|14 : CCAATATCTCACCAGAGGGCGTTGTACGCTACTC--CCC
gi|15 : AGG--CTTGCGTAACGGCGCCCTCT---GGTGAGAGATTGa
gi|16 : CCAATCTCTCACCAGAGGGCGTTGTACGTTA
gi|2 : aCCAATCTCTCACCCGAGGGCGTTGTACGCTATATAATCCCAACACCTCTGTTATCATCTGAATTTATACAAAAATCTTGTAAAACGTACAGT---------TTTTTTTGTATTTACAGAATTTTTATCGTTATCATATTAAAAATGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AAAACAAA-AAACT-ACAATAAAACAA-CA----TTCAAG------TTTTCAAACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTTA-TGTGTG--ACCAGATGACATATATATG-AAGATACAGTGAGG--CAATTTCGGTCA-ATTTATCAGTAATTTCAGTCCCTT-TTT-------------------CGGTAATTTCGATGATTCTATGTACCGGACCTACTTTACAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACA-CTCCCTCT---AGTGAGAGATTGG
gi|3 : CATTCTCTCACCAGAGGGCGTTGTACGTTTTCT--CTTCAACACCTCTGTTATCGTCTAAATT---ACAAGATTTTTGTAAAACGTTTAG----------TTTTTTAATATTTACAGAATTTTTATCGTTATCATATTAAAAACTGAAAGACTTAT-CTTTTTTGGCATATTATTGGGTATT-----AAAAC-GATAAACT-ACAATTAAACAA-CA----TTCAA-------
gi|4 : aaaaaaaaaaaaaaacaacaaaaaacaaaaaaaaaaaaacccaaaaaaaccccaacaaaccatatgtatacatattcaacatgtccataactgtagaaagtctggggagttgtgttcaagagaaattgattaggtgcactagctTG-AACATACAGAGATGATTAATTTCGGTAA---TTATCAGTAATTTCGGTCAC-TGTTTGGAAAATTTTAGGGATAAGCGGTAATTTCGGTGATTCTATGTACCGGACC--------------TAACATTGGTGTAAGAAAAGCACATGCGTGACG-CGCCCTCT---GGTGAGAGATTG
gi|5 : TTTTAATATTTACAGAATTTTTATCGTTATTATA-------------GACTTCT-C-TTTTGGGCACATTTTTAGGTATT-----A-----------TTGACGATAAA-------------------------------TTCTTTAGATAG------TTACCA-CTCGT-CATGAAATTATA-TATGTG--ACCAGATGACATATAGATG-
gi|6 : GAACTACTTCGCAGACGATA-CAGAGGTGTA-GTGAAG--CTTGCGTAACG-CGCCCTCT----GTGAGAGATT
gi|8 : aattcacagtggctttcccatttnnnnnnnnnnnnnnnnnnnnnnnnncgcAATCTCTCACCAGAGGGCGTTGTACGCTACA---CTCCAACA
gi|8 : AAGTGAAG--CTTGCGTAATG-CGCTCTCT---GGTGAGAGATTGagaaagtgaagcttgcgtaatgcgctctctggtgagagattg
gi|9 : aatctctcaccagagggcgttgtacgctacactccaacaagaTAAATCAATCAAAGTTTCAA--------------AATCCTTAGATAG------TTACCA-ATCGTGCATGAAATTTTATTGTTTGGAACAGGGTGACATGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGATTCAAATATTGCAACCCATCAATTTTATCTACGG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 111 222 6666666666666 1 1 22222 1 1111 66666666666666 222222 11 1 11 22 11111111111111111111111111
lowQualScore : 222 2 3 3 333 1 3333333333333 1 3 555 0 0 0 55555 0 3 1 1 8 7777 66666666666666 1 333333 8 8 1 8 11 0 3 88 00 0 88888888888888888888888888 0 3 99 1 0 1 66 5 9999
lowQualScore : ... . . . ... . ............. . . ... . . . ..... . . . . . .... .............. . ...... . . . . .. . . .. .. . .......................... . . .. . . . .. . ....
lowQualScore : 888 5 2 7 333 0 3333333333333 0 2 222 0 0 2 00000 0 2 0 0 0 0000 22222222222222 4 000000 0 0 4 0 00 0 7 33 77 7 00000000000000000000000000 7 2 66 0 8 7 99 0 0000
consensus : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
Reference ( family-2429 ) : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
gi|1 : CCAATCTCTCACCAGAGGGCGTTGTACACTACAC--TCC-AAC--------------CTAGATT---ACAAAAATATTGTAAAATGTA-GGTGTTTTTTTTTTTTTTTATATTTACAGATTTTTTATCGTTATCATATTAAAAACGTAAAAACTTCTTC-TGTTGGGCATATTGTTGGGTATTTTTTAAA-AACGATAAACTACAATAAAACAA-CA----TTTAAAAATTCATTT----TTTTTTTAGATAGGCCTAGTTACCCTAGCGT-CATGAAATTTTA-TGTGTG--ACCAGATAATATATAGATGGAACATACAGTGACA--TAATTTCGGTAACATTTTTTGGTAATTTCGGTGA--T-AAT-------------------CGGTAATTTCGGTGATTCTACGTACCTTTCCTACTTTGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATT
gi|10 : TTC-CAGATGTTAACAGAGATGTAGGTGAAG--CTTGCATATTG-CACCTTCT---AGTG
gi|11 : gtacctcctggttgtt----ACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTAT-TGTGTG--AACAGATGACATATA
gi|12 : CCAATCTCTCACCAGAGGGCGTTGTACGTTATAC--CC
gi|13 : aGAAG--CTTGCGTAACG-CGCCCTCTGGCGGTGATAGAATGaa
gi|14 : CCAATATCTCACCAGAGGGCGTTGTACGCTACTC--CCC
gi|15 : AGG--CTTGCGTAACGGCGCCCTCT---GGTGAGAGATTGa
gi|16 : CCAATCTCTCACCAGAGGGCGTTGTACGTTA
gi|2 : aCCAATCTCTCACCCGAGGGCGTTGTACGCTATATAATCCCAACACCTCTGTTATCATCTGAATTTATACAAAAATCTTGTAAAACGTACAGT---------TTTTTTTGTATTTACAGAATTTTTATCGTTATCATATTAAAAATGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACAAAAAACTACAATAAAACAA-CA----TTCAAG------TTTTCAAACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTTA-TGTGTG--ACCAGATGACATATATATG-AAGATACAGTGAGG--CAATTTCGGTCA-ATTTATCAGTAATTTCAGTCCCTT-TTT-------------------CGGTAATTTCGATGATTCTATGTACCGGACCTACTTTACAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACA-CTCCCTCT---AGTGAGAGATTGG
gi|3 : CATTCTCTCACCAGAGGGCGTTGTACGTTTTCT--CTTCAACACCTCTGTTATCGTCTAAATT---ACAAGATTTTTGTAAAACGTTTAG----------TTTTTTAATATTTACAGAATTTTTATCGTTATCATATTAAAAACTGAAAGACTTAT-CTTTTTTGGCATATTATTGGGTATT-----AA-AACGATAAACTACAATTAAACAA-CA----TTCAA-------
gi|4 : aaaaaaaaaaaaaaacaacaaaaaacaaaaaaaaaaaaacccaaaaaaaccccaacaaaccatatgtatacatattcaacatgtccataactgtagaaagtctggggagttgtgttcaagagaaattgattaggtgcactagctTG-AACATACAGAGATGATTAATTTCGGTAA---TTATCAGTAATTTCGGTCAC-TGTTTGGAAAATTTTAGGGATAAGCGGTAATTTCGGTGATTCTATGTACCGGACC--------------TAACATTGGTGTAAGAAAAGCACATGCGTGACG-CGCCCTCT---GGTGAGAGATTG
gi|5 : TTTTAATATTTACAGAATTTTTATCGTTATTATA-------------GACTTCT-C-TTTTGGGCACATTTTTAGGTATT-----ATTGACGATAA-----------------------------------------ATTCTTTAGATAG------TTACCA-CTCGT-CATGAAATTATA-TATGTG--ACCAGATGACATATAGATG-
gi|6 : GAACTACTTCGCAGACGATA-CAGAGGTGTA-GTGAAG--CTTGCGTAACG-CGCCCTCT----GTGAGAGATT
gi|8 : aattcacagtggctttcccatttnnnnnnnnnnnnnnnnnnnnnnnnncgcAATCTCTCACCAGAGGGCGTTGTACGCTACA---CTCCAACA
gi|8 : AAGTGAAG--CTTGCGTAATG-CGCTCTCT---GGTGAGAGATTGagaaagtgaagcttgcgtaatgcgctctctggtgagagattg
gi|9 : aatctctcaccagagggcgttgtacgctacactccaacaagaTAAATCAATCAAAGTTTCAA--------------AATCCTTAGATAG------TTACCA-ATCGTGCATGAAATTTTATTGTTTGGAACAGGGTGACATGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGATTCAAATATTGCAACCCATCAATTTTATCTACGG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 111 222 6666666666666 1 1 22222 1 1111 66666666666666 222222 11 1 11 22 11111111111111111111111111
lowQualScore : 222 2 3 3 333 1 3333333333333 1 3 555 0 0 0 55555 0 3 1 1 8 7777 66666666666666 1 333333 8 8 1 8 11 0 3 88 00 0 88888888888888888888888888 0 3 99 1 0 1 66 5 9999
lowQualScore : ... . . . ... . ............. . . ... . . . ..... . . . . . .... .............. . ...... . . . . .. . . .. .. . .......................... . . .. . . . .. . ....
lowQualScore : 888 5 2 7 333 0 3333333333333 0 2 222 0 0 2 00000 0 2 0 0 0 0000 22222222222222 4 000000 0 0 4 0 00 0 7 33 77 7 00000000000000000000000000 7 2 66 0 8 7 99 0 0000
consensus : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
Reference ( family-2429 ) : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
gi|1 : CCAATCTCTCACCAGAGGGCGTTGTACACTACAC--TCC-AAC--------------CTAGATT---ACAAAAATATTGTAAAATGTA-GGTGTTTTTTTTTTTTTTTATATTTACAGATTTTTTATCGTTATCATATTAAAAACGTAAAAACTTCTTC-TGTTGGGCATATTGTTGGGTATTTTTTAAA-AACGATAAACTACAATAAAACAA-CA----TTTAAAAATTCATTT----TTTTTTTAGATAGGCCTAGTTACCCTAGCGT-CATGAAATTTTA-TGTGTG--ACCAGATAATATATAGATGGAACATACAGTGACA--TAATTTCGGTAACATTTTTTGGTAATTTCGGTGA--T-AAT-------------------CGGTAATTTCGGTGATTCTACGTACCTTTCCTACTTTGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATT
gi|10 : TTC-CAGATGTTAACAGAGATGTAGGTGAAG--CTTGCATATTG-CACCTTCT---AGTG
gi|11 : gtacctcctggttgtt----ACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTAT-TGTGTG--AACAGATGACATATA
gi|12 : CCAATCTCTCACCAGAGGGCGTTGTACGTTATAC--CC
gi|13 : aGAAG--CTTGCGTAACG-CGCCCTCTGGCGGTGATAGAATGaa
gi|14 : CCAATATCTCACCAGAGGGCGTTGTACGCTACTC--CCC
gi|15 : AGG--CTTGCGTAACGGCGCCCTCT---GGTGAGAGATTGa
gi|16 : CCAATCTCTCACCAGAGGGCGTTGTACGTTA
gi|2 : aCCAATCTCTCACCCGAGGGCGTTGTACGCTATATAATCCCAACACCTCTGTTATCATCTGAATTTATACAAAAATCTTGTAAAACGTACAGT---------TTTTTTTGTATTTACAGAATTTTTATCGTTATCATATTAAAAATGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACAAAAAACTACAATAAAACAA-CA----TTCAAG------TTTTCAAACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTTA-TGTGTG--ACCAGATGACATATATATG-AAGATACAGTGAGG--CAATTTCGGTCA-ATTTATCAGTAATTTCAGTCCCTT-TTT-------------------CGGTAATTTCGATGATTCTATGTACCGGACCTACTTTACAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACA-CTCCCTCT---AGTGAGAGATTGG
gi|3 : CATTCTCTCACCAGAGGGCGTTGTACGTTTTCT--CTTCAACACCTCTGTTATCGTCTAAATT---ACAAGATTTTTGTAAAACGTTTAG----------TTTTTTAATATTTACAGAATTTTTATCGTTATCATATTAAAAACTGAAAGACTTAT-CTTTTTTGGCATATTATTGGGTATT-----AA-AACGATAAACTACAATTAAACAA-CA----TTCAA-------
gi|4 : aaaaaaaaaaaaaaacaacaaaaaacaaaaaaaaaaaaacccaaaaaaaccccaacaaaccatatgtatacatattcaacatgtccataactgtagaaagtctggggagttgtgttcaagagaaattgattaggtgcactagctTG-AACATACAGAGATGATTAATTTCGGTAA---TTATCAGTAATTTCGGTCAC-TGTTTGGAAAATTTTAGGGATAAGCGGTAATTTCGGTGATTCTATGTACCGGACC--------------TAACATTGGTGTAAGAAAAGCACATGCGTGACG-CGCCCTCT---GGTGAGAGATTG
gi|5 : TTTTAATATTTACAGAATTTTTATCGTTATTATA-------------GACTTCT-C-TTTTGGGCACATTTTTAGGTATT-----ATTGACGATAA-----------------------------------------ATTCTTTAGATAG------TTACCA-CTCGT-CATGAAATTATA-TATGTG--ACCAGATGACATATAGATG-
gi|6 : GAACTACTTCGCAGACGATA-CAGAGGTGTA-GTGAAG--CTTGCGTAACG-CGCCCTCT----GTGAGAGATT
gi|8 : aattcacagtggctttcccatttnnnnnnnnnnnnnnnnnnnnnnnnncgcAATCTCTCACCAGAGGGCGTTGTACGCTACA---CTCCAACA
gi|8 : AAGTGAAG--CTTGCGTAATG-CGCTCTCT---GGTGAGAGATTGagaaagtgaagcttgcgtaatgcgctctctggtgagagattg
gi|9 : aatctctcaccagagggcgttgtacgctacactccaacaagaTAAATCAATCAAAGTTTCAA--------------AATCCTTAGATAG------TTACCA-ATCGTGCATGAAATTTTATTGTTTGGAACAGGGTGACATGT
blockSeqs : TAA C A A TAT C CAGT T T TGG . T . T A A A T AAGT GTTTTCAA C . . G T T GA . G AT A CTGTTTGGAAAATTTTAGGGATAAG T TA T G CA G GGCG
blockSeqs : C C A G . T TAG A T CTG . . . . A T A . . . C . . . T . . . T . . CTTTTT T CG A A . . A
blockSeqs : C C A A . . . . . . . A T . . . T . . . A . . . . C A A . . G
blockSeqs : T . . . . A . . . A . . . . A . . A
blockSeqs : . . . . G
blockSeqs : . . G
blockSeqs : . . .
blockSeqCons : ******
originalCons : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
finalCons : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGATTCAAATATTGCAACCCATCAATTTTATCTACGG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 111 222 6666666666666 1 1 22222 1 1111 66666666666666 222222 11 1 11 22 11111111111111111111111111
lowQualScore : 222 2 3 3 333 1 3333333333333 1 3 555 0 0 0 55555 0 3 1 1 8 7777 66666666666666 1 333333 8 8 1 8 11 0 3 88 00 0 88888888888888888888888888 0 3 99 1 0 1 66 5 9999
lowQualScore : ... . . . ... . ............. . . ... . . . ..... . . . . . .... .............. . ...... . . . . .. . . .. .. . .......................... . . .. . . . .. . ....
lowQualScore : 888 5 2 7 333 0 3333333333333 0 2 222 0 0 2 00000 0 2 0 0 0 0000 22222222222222 4 000000 0 0 4 0 00 0 7 33 77 7 00000000000000000000000000 7 2 66 0 8 7 99 0 0000
consensus : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
Reference ( family-2429 ) : CCAATCTCTCACCAGAGGGCGTTGTACGCTACAC--CCCCAACACCTCTGTTATCGTCTAAATT---ACAAAAATNTTGTAAAACGTACGGT---------TTTTTTNATATTTACAGAATTTTTATCGTTATCATATTAAAAACGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACGATAAACTACAATAAAACAA-CA----TTCAA-------TTT----ACTCTTTAGATAG------TTACCA-ATCGT-CACGAAATTTTA-TGTGTG--ACCAGATGACATATAGATG-AACATACAGTGACG--TAATTTCGGTAA-ATTTATCGGTAATTTCGGTCAC-T-TTT-------------------CGGTAATTTCGGTGATTCTACGTACCGGACCTACTTCGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATTGG
gi|1 : CCAATCTCTCACCAGAGGGCGTTGTACACTACAC--TCC-AAC--------------CTAGATT---ACAAAAATATTGTAAAATGTA-GGTGTTTTTTTTTTTTTTTATATTTACAGATTTTTTATCGTTATCATATTAAAAACGTAAAAACTTCTTC-TGTTGGGCATATTGTTGGGTATTTTTTAAA-AACGATAAACTACAATAAAACAA-CA----TTTAAAAATTCATTT----TTTTTTTAGATAGGCCTAGTTACCCTAGCGT-CATGAAATTTTA-TGTGTG--ACCAGATAATATATAGATGGAACATACAGTGACA--TAATTTCGGTAACATTTTTTGGTAATTTCGGTGA--T-AAT-------------------CGGTAATTTCGGTGATTCTACGTACCTTTCCTACTTTGCAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACG-CGCCCTCT---GGTGAGAGATT
gi|10 : TTC-CAGATGTTAACAGAGATGTAGGTGAAG--CTTGCATATTG-CACCTTCT---AGTG
gi|11 : gtacctcctggttgtt----ACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTAT-TGTGTG--AACAGATGACATATA
gi|12 : CCAATCTCTCACCAGAGGGCGTTGTACGTTATAC--CC
gi|13 : aGAAG--CTTGCGTAACG-CGCCCTCTGGCGGTGATAGAATGaa
gi|14 : CCAATATCTCACCAGAGGGCGTTGTACGCTACTC--CCC
gi|15 : AGG--CTTGCGTAACGGCGCCCTCT---GGTGAGAGATTGa
gi|16 : CCAATCTCTCACCAGAGGGCGTTGTACGTTA
gi|2 : aCCAATCTCTCACCCGAGGGCGTTGTACGCTATATAATCCCAACACCTCTGTTATCATCTGAATTTATACAAAAATCTTGTAAAACGTACAGT---------TTTTTTTGTATTTACAGAATTTTTATCGTTATCATATTAAAAATGGAAAGACTTCT-C-TTTTGGGCATATTGTTGGGTATT-----AA-AACAAAAAACTACAATAAAACAA-CA----TTCAAG------TTTTCAAACTCTTTAGATAT------TTACCA-ATCGT-CTCGAAATTTTA-TGTGTG--ACCAGATGACATATATATG-AAGATACAGTGAGG--CAATTTCGGTCA-ATTTATCAGTAATTTCAGTCCCTT-TTT-------------------CGGTAATTTCGATGATTCTATGTACCGGACCTACTTTACAGACGATAACAGAGGTGTAAGTGAAG--CTTGCGTAACA-CTCCCTCT---AGTGAGAGATTGG
gi|3 : CATTCTCTCACCAGAGGGCGTTGTACGTTTTCT--CTTCAACACCTCTGTTATCGTCTAAATT---ACAAGATTTTTGTAAAACGTTTAG----------TTTTTTAATATTTACAGAATTTTTATCGTTATCATATTAAAAACTGAAAGACTTAT-CTTTTTTGGCATATTATTGGGTATT-----AA-AACGATAAACTACAATTAAACAA-CA----TTCAA-------
gi|4 : aaaaaaaaaaaaaaacaacaaaaaacaaaaaaaaaaaaacccaaaaaaaccccaacaaaccatatgtatacatattcaacatgtccataactgtagaaagtctggggagttgtgttcaagagaaattgattaggtgcactagctTG-AACATACAGAGATGATTAATTTCGGTAA---TTATCAGTAATTTCGGTCAC-TGTTTGGAAAATTTTAGGGATAAGCGGTAATTTCGGTGATTCTATGTACCGGACC--------------TAACATTGGTGTAAGAAAAGCACATGCGTGACG-CGCCCTCT---GGTGAGAGATTG
gi|5 : TTTTAATATTTACAGAATTTTTATCGTTATTATA-------------GACTTCT-C-TTTTGGGCACATTTTTAGGTATT-----ATTGACGATAA-----------------------------------------ATTCTTTAGATAG------TTACCA-CTCGT-CATGAAATTATA-TATGTG--ACCAGATGACATATAGATG-
gi|6 : GAACTACTTCGCAGACGATA-CAGAGGTGTA-GTGAAG--CTTGCGTAACG-CGCCCTCT----GTGAGAGATT
gi|8 : aattcacagtggctttcccatttnnnnnnnnnnnnnnnnnnnnnnnnncgcAATCTCTCACCAGAGGGCGTTGTACGCTACA---CTCCAACA
gi|8 : AAGTGAAG--CTTGCGTAATG-CGCTCTCT---GGTGAGAGATTGagaaagtgaagcttgcgtaatgcgctctctggtgagagattg
gi|9 : aatctctcaccagagggcgttgtacgctacactccaacaagaTAAATCAATCAAAGTTTCAA--------------AATCCTTAGATAG------TTACCA-ATCGTGCATGAAATTTTATTGTTTGGAACAGGGTGACATGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAAAAAAAAAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGATTCAAATATTGCAACCCATCAATTTTATCTACGG