lowQualScore : 111111 11111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333 1 1 11 333333333333333333333333333333 11111111 111111111111111 1111 222222 2222222222 66666666666666666666666666666 1111 666666666666666666666666 11 44444444444444444444 5555555555555555555555555 11111111111 2222 4444444444 666666666666666 1 1111 1 111111 3333 2222 111 4444444444 11 111 1111111 555555555555555555555 22 111 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 33333333 1 111111 3333333 33333333333333333333333333333 11 22222222 2222222222222 1 222222 7777777777 2 11 2222 1111 44444444 11 111 1111 111 1111 2222222 9999999999999999999999999999999 11 777777777777777777 1111 22222222222222 1 111 11 222222222 1111 22222222222 1 11 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333 5555555555 2 33 9999999999 22 11 1 1 1 2 1 1 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 2 333
lowQualScore : 2 8888888888 6 1 5 5 5 1 7 77 2 99 3 666666666666666666666666666666 99999999 000000000000000 3 6666 5555 5555 1111 33 000000 1111111111 99999 3 22222222222222222222222222222 3 5555 2 777777777777777777777777 33 1 00000000000000000000 5 4 7 6666666666666666666666666 999 66666666666 5 5 5 5 4444 5 5 66 999 3333333333 8 1 111111111111111 5 2 2 1 8888 0 5 5 6 555555 2 1111 0 5555 000 5 0 8888888888 77 000 5 88 5555555 111111111111111111111 5 5 11 0 222 77 5 4 4 4 6 0 4 66 4 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77 4 22 5 5 5 88888888 5 000000 99 1111111 888 5 77 22222222222222222222222222222 5 5 22 0 0 2 44444444 0000000000000 5 5 99 111111 88 6 0 0000000000 4 99 1111 5555 88888888 11 444 8 8 8 5555 777 99 3333 2222222 6 6 99 1111111111111111111111111111111 66 5 11 0 888888888888888888 0000 5 2 5 2 66666666666666 0 0 66 77 5 5 000 77 0 55 5 777777777 6 7 8888 7 99999999999 5 3 5 6 66 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3333 4444444444 0 11 4444444444 77 7 77 88 4 1 5 0 6 4 3 5 7 6 6 3 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 5 0 4 666 6 6
lowQualScore : . .......... . . . . . . . .. . .. . .............................. ........ ............... . .... .... .... .... .. ...... .......... ..... . ............................. . .... . ........................ .. . .................... . . . ......................... ... ........... . . . . .... . . .. ... .......... . . ............... . . . . .... . . . . ...... . .... . .... ... . . .......... .. ... . .. ....... ..................... . . .. . ... .. . . . . . . . .. . . ................................................................................................. .. . .. . . . ........ . ...... .. ....... ... . .. ............................. . . .. . . . ........ ............. . . .. ...... .. . . .......... . .. .... .... ........ .. ... . . . .... ... .. .... ....... . . .. ............................... .. . .. . .................. .... . . . . .............. . . .. .. . . ... .. . .. . ......... . . .... . ........... . . . . .. ............................................................................................................................................................................................................................................................................................................................................................................................................ .... .......... . .. .......... .. . .. .. . . . . . . . . . . . . . .......................................................................................................... . . . . ... . .
lowQualScore : 2 9999999999 7 7 1 0 0 4 0 66 5 00 2 666666666666666666666666666666 11111111 888888888888888 3 8888 7777 7777 9999 99 222222 9999999999 11111 6 66666666666666666666666666666 7 2222 1 999999999999999999999999 88 1 66666666666666666666 0 1 2 9999999999999999999999999 444 66666666666 0 0 0 0 1111 0 7 00 333 3333333333 6 7 444444444444444 7 3 1 6 7777 1 0 7 0 000000 3 3333 1 4444 000 7 7 4444444444 44 000 7 77 7777777 777777777777777777777 7 7 11 7 999 99 0 4 4 4 8 8 4 11 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 7 00 4 7 7 33333333 0 111111 11 2222222 888 0 22 55555555555555555555555555555 0 0 00 7 7 5 99999999 7777777777777 2 0 22 555555 00 7 3 0000000000 0 00 6666 8888 44444444 00 000 0 0 0 2222 000 22 5555 8888888 7 0 22 8888888888888888888888888888888 99 7 77 7 333333333333333333 6666 0 2 0 0 66666666666666 0 2 99 00 0 0 000 99 1 99 7 999999999 7 3 8888 3 22222222222 7 2 3 7 55 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5555 0000000000 0 55 5555555555 55 3 00 00 0 5 5 5 0 0 0 5 3 7 7 3 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 000 0 0
consensus : AGTGACCATTCAGT--------C-ACT-TTTCAGTGA-CCTTTCAG-TCACNTTTCAGTNACCATTCAGTN---------------AC-ATT------TCAGTGA----TCAT----TNAGT------CA-CN---TTT----CA----GTGACC---NTT--CAGTC---CNCTTTCAGT---CAA---NTTTCA-----G-TGAC---CATTT--A-TAG-A--GTTACA-GGACCNTTCAGTGA---CCNTTCAG----TC--AN----------ATTTCAGTAC-CCATC--------------------AAGTC-ATACACTTTTAAAAATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTC-GGA-T-ATT-TCAGAG-TC-TATTT-TTGCATTCGC-GAA-TTG-TACTAGTAGTA---NTTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCNGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATA--TTCATGTAACTTTTAATGTTCAGT---CATA---TTATCTC-AGCATTCATTT-CT-C-GC--TGTTCAATGAAATTT---C-AAT-GAACGATTC----GCTGA----------T--A--C----CA-GTGCTT-GT-AAAAATGACTTTC--ATAA--CGC-TGC-ATGA-CA-AATCAAAACA-AA--TCA-TT-TCACAAAA----------------N-TATATTTTT----ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGATTTTAAAAAA-ATAAT-A-T--TACA--TNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTG-CGAATGATAGACCGGAATCA---C--TGCATCAATTTCTC-TTTG------GA---G-ATG-CCCA-GTTAG----CT-----TACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTNTTGAAAAA--AGA-----ACACATGATTATNTCAACA-NCAATAGATG---A-NTTATTTTT-TACT------ANAAAAAATGAAAAA-TAA--AATGCG-AAAATGCATT---AAAAAAA--AA---T-AA-GCG-TA--T-TTGACC--AAG--ATC-CTTCTAA-A----G-ATAGTGAATAA--AAC-T-A------AT------TCANTT----AAATGCATTT--TCACTTT-ATAT-ACCCATC---AG------C----CACG----TTC-TAGAG-CCCGAACC-----CCTA-----GA-GAGATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAA-TAATGTT-T--TA-----CATGGCC-GTGTTTACAATATTTT--ANTCCACAA---ACAG----A-AATAATAATTAATGCTATT-GAT-AGGAAAG-AGAGAAGCA----------CA----CG--AC--------------------ATCATAT----G--------T-------CT------AAATCAGGG---------------N-G--TACAT-CAAGATGATTATTAA-AA----T----------------------GCG-AGGTTC---AAG-A-------------AA-----A------------TG-C-----------------TAACAC-------A--TA-TAT-T-TT-ACAAC-A-TGAAATTCA-T-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTC---CNTGA-TTTTATCAACC---------CC-CCT--CCAACCCACCCACATTCCCACTGCTATAAAACACGCATTAATTGTTTCAAACNNTNTCAAAAATCCTTGNTATATCTACATGATTTATGGTCATGTACATGNNCGCCAATTGGCAGTNTTTNATAGCCAGNTGACGATNAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A--C-CA-ACCAA-CATTTT--CATC-A-GTA-----------------ATATATGTACATTT-GGTTTGCGTAAATCCTGTATATCTGATTATAANATTGAAAAATGCACCATGNGAGAAATAGATGTATAA
Reference ( gi|1 ) : AGTGACCATTTAGT--------C-ACT-TCTCAGAGA-CCTTTCAG-TCACATTTTTGTAACCTTTCAATC---------------AC-ATT------TCAGTAA----TCAT----TGAGT------CA-CA---TTT----CA----GTGACC---TTT--CAGTC---CGCTTTCAGT---CAA---GTTTCA-----G-TGAC---TATGT--A-TAGAA--GTTACGGGGACCTTTCAGTGA---TCTTTAAG----TG--AA----------GTTTCAGTAG-CCATC--------------------AAGTC-ATACATTTTTAAAAAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTC-GGA-T-ATT-TCAGAG-AT-TATTT-TTGCATTCGC-GAA-TTG-TACTAAAGATA---ATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATA--CACATGTAACTTTTAATGTTCAGT---AATA---TTATCTC-AGCATTCATTT-GT-T-GC--TGTTCAATGGCATTT---C-AAT-GAACGACTT----GCTGA----------T--G--C----CA-GTGCTT-GT-TAAAATGACTTTC--GTAA--CGC-TGC-ATGA-CA-ACTCGAAACA-AA--TCA-TT-TCACAAAA----------------G-TAT-TTTTT----ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATATTTAAGAAAA-ATAATTACTGGTACA--TTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCGACCGGAATCA---C--TGCATCAATTTCTT-TTT-------GA---G-ATA-CCCA-GTTAG----CTATATGTACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATG---A-ATTACTTTT-TACCA-----AAAAAAAATG-AAA--TAA--AGTGTG-AAAATGCTTT---TAAAAAA--AA---T-GA-GCG-TA--T-TTGACT--AAG--ATC-CCTCTAG-A----G-ATAGTGAATAA--AAC-T-A------AT------TCAGTT----AATTGCATTT--TCACTTT-ATAC-ACCCATC---A-------C----C-CG----TTC-TAGAG-CCCGAGCC-----CCAA-----GG-GAGATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAA-GAATGTT-T--TA-----CATGACC-GTGTTTACAATATTTT--ACTCCACAA---ATAT----A-AATAATAATTAATGATATT-GAT-AGGAAAGTGGAGAAGCA----------CA----TG--AC--------------------ATC-TAT----G--------T-------CT------AAATCAGGA---------------A-G--TACAT-CAAGATGATTATTAA-AA----T----------------------GTG-AGATTC---AAG-A-------------AA-----A------------T--------------------TAACAC-------A--TA-TAT-T-TA-ACAAC-A-TGAAATTCA-T-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT----AATGA-GTTTATCAACC---------CC-CCT--TTA----------ATT------------AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCTCA-ATCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGT--AT------TAT-TGATCAGAAGA-TGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|2 : AGCGACCATCCAGT--------C-ATT-TTCAAGCGAACCATTCAG-TCACATTCAGATGACCTTTCAGGC---------------ACCATT------TTAGTGACTTTTCATGACCTTAGT------TA-CA---TTT----CA----GTGACC--------CATTC---CA---TCA-----CAA-----TTCA-----G-TGAC---T-TTTCAA-TTGCA--TTTATGTGACCTTTTCAGTCAAGTTCAGTAAGCCATTGT-AACATTCGTCATATTTTAATGC-CCCTC--------------------AAGTCTATACATTTTTAAAAATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTC-GAAAT-ATT-TCAGAG-TC-TATTTATTGCATTCGC-GAA-TTG-TACTAGTAGTA---ATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATA--TCCATGTAACTTTTTATGTTCAGT---CATA---TTATCTCTAGCATT-ATTTCCT-C-GC--TGTTCAATGAAATTT---CAAATGGAACTATTC----GCTGA----------TA-A--C----CA-GTGCTT-GT-AAAAATAACTTTA--ATAA--CGCATGC-ATGA-CA-AATCAAAACA-AA--TCATTT-TCACCAAAT---------------C-TATATTTTT----ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGATTTTAAAAAA-A----------TACAATTTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTGTTAGA------ACCGGAATCA---CATTGCATCGGTTTTTC-TTT-------GAAGTA-ATA-TCCACCTTAGCTCACTGTATAGACTATTATT-AC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATG---ATATT-TTTTT-TGTTT-----TTTGATAGTG-AAAATTAA--A-TGCGAAAAATGCACCACAAAAAAAA--AA---TAAA-GCG-TATCT-TTGACC--AAG--ATC-TTTCTAA-A----G-ATAGCGAATAA--AACTT-A------AT------T-ATTTCGCAAAATGCATTT--TCACTTT-ATAT-ACAT-TC---AGTGC---C----C-CG----CTCAAAGAG-CCCGAATC-----CCGA-----GACGAGATCGA--CAACT-TTCG-GAGGT---TT--ATTAAA-TAATGTT-TTATA-----CATGACT-GTGTTTACAATA-TTT--ACTCCAC-A---ATGTTACGA-AATAATAA-----GCTATTAGATGAGGGAAGAAGAG-AGCA----------TA----CG--ACATAAATGTTCATGTATAGTGATC-TAT----G--------T-------CT------AAATCGGGG---------------GCG--AACAT-CAAGATGATTATTAA-AA----A----------------------GTGCAAGTCC---AAG-ACATTGTCTAAGGGAA-----A------------CGTCG----------------TAACATGTTATTGA--TATTAT-T-T--ACAGC-A-TGAAATTAA-TCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAAT---TTTTATCA--C---------CC-CCT--
gi|11 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcAGTTACCTTTTAGT--------CTAGT-T-TCAGTGA-CCTTTAAG-TCATGTTTTAGTAGC----CA-----------------------T------TCAGTAA-----CAT----TCTGC------CA-TA---TTT----CA----GTGCCC---ATC--AAGTCATACACTTTTAA----CAATTTGTTTCATTTTTG-TGAC---TAat
gi|15 : cattcgatcctttttcactgatcattcAATGACCATTCAGTAAAACTGTT-ACC-TTTCAGTGA-CCTTTTAGTTCACatttgcggattatttcagaatctatttttgcatttgcgaattgtactagtagtgtttcaacgacatattatgtatatttcaagcagtttggcatcctctgcctctgatagatgtaattgttcatctatattcatgtaatttttcatgttcagtcacattatttaagcattaatttccccaatgttcaatggaatttcaatgaccgattcactgaaatggcgtattaccagtgcttgtaaaaatgactttcctaacgctgcatgaaaaattaaaacaaactatttcacaaaat
gi|15 : aagatgaaaccttacctttcagtgacatttcaAGTGACCATTCAGT----------ACTCTTTCAGTGA-CCggatgatcactgaaaggtacttttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatcagtgaccattcagtactctttcagtgaccat
gi|17 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtacttttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatc--------C-ACC-TTTCAGTGA-CCTTTCAG-TGGNNNNNNNNNNNNNNNNNNNNN---------------NN-NNN------NNNNNNN----NNNN----NNNNN------NN-NN---NNN----NN----NNNACC---TTT--CAGTC---ACCTTTCAGT---CAC---CATTCC-----G-TTAC---CATat
gi|15 : acaggatgaaatcg-ACT-TTTCAGTCA-CCTTTCAG-TTACCATTCCGTTACCATTCAGTTCAACGAATGGCGTGTAC-ATT------TCAGTGA----AAAT----TCAGT------TA-CC---TAT----CA----GTGACC---ATT--CAGTA---CTCTTTCAGT---tcagttcactgaatggcatgt
gi|6 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTCAGGGA-CCTTTAAG-TCAAGTTTCAGTAGCCATTCAGTA---------------AC-ATT------CTA-TCA----T-AT----TAAGT------CA-CACACTTTAAAACAATTTGTGACCAATTTT--CAGgaccat
gi|15 : tatttatagaagttacagggaccatA-CTTTTCAG-TCACCTTTCAGTTACCATTCCGTT---------------AC-CAT------TCAGT------TCAA----CGAATGGCGTGTA-CA---TTT----CA----GTGAA----------AAT---------TCAGT---TAC---CTATCA-----G-TGAC---CAT-T----CAG------TAC-----TCTTTCAGTGA---CCatatttcagagtatttttttgcattcgcgaaatggtagaagtagagattcaatgacatgtatctatcaagctgtttgtcctcctctgtctctggtagatgtaattgttcatctatattcatgtaacttttaatgttcagttatattatctcagcattcatttcatcactgttgtatgaaatttcaataaacgattcgccaaaaccaatgcttgtacaaataacgttcataacgctgcatgccaaatcaaaacaaaccatttcaaagaaactatatttctaattatttatttaatttcattaaagataaccaaagtagattttttaaaacataaattacattattacaagtcaatcttcatcacattttgaattcactcttttctggcgaaaggtagaccggaatcacagctgcatcaatttcttgttggagatgtcccagttagctaccttcatccactatttgcagggtcatttggatatcgaaatcttgaagctct
gi|15 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtAG-T-ACCTTTCAGTGATCATCCAATG---------------AC-CAT------TCAGTAA-----AAC----TG--T------TA-CC---TTT----CA----GTGACC---TTT--TAGTT---CACTat
gi|3 : aagatgaaaccttacctttcagtgacatttcGTAACATT-CTGTC---------------AT-ATT------TCAGTAC----TCAT----CAAGT------CA-TA---C---------------ACC---TTTAACAATT---CGTTTTTTGTGACCAA---TTTTCA-----G-tttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatcagtgaccattcagtactctttcagtgaccat
gi|28 : ttagtagccattcaAATT---------------AC-ATTGACCTCTCAGTGA----TCAT----TCAGT------CC-TC---TTT----CA----GTGACC---atatttcagagtatatttttgcattcgcgaactgtgctagtagtgtttcaatgatatatgtatctatcaagcagtttgtcctcctctgtctctggtagatgtaattgtttatctatattcatgtaacttttaatgttcagtcattatcccagcattcaattcttcattgttcaattatatttcaatgaacgattcgttgataccagtgcttgtaaaaatgactttcataacgttgcatgaacaatcaaaacaaatcattgcacaaaatcaaatagcaataactatgttttttaatattcattaaatttcattgagcatagacaaagtaatttgtaataaattgcattattacaagtccattttgataccattttgtatccactctcttctggcgaatgatagactggaataactgcatcaatttctctttggagctcgagatgcccagttagctaccatcatccactattttccaagatcatttggagtatataaatcttgaaactctcttgaaaaaatagaacacttgattatctcaaccctaatagataatttatttcttacaaaaaaatgaaaataaaatgagaaaatgcattaaaagataagcgtaactgaccacgatgcctctaaggatagtgaataaatctattattccgttaaatgcattttcactttatatacccatcatgacaccgttctagagccctagcacctagagagatggaaaatttcggagg
gi|28 : CAT----TGA-----------CC---TCT----CA----GTGATC---ATT--CAGTC---CTCTTTCAGT---at
gi|18 : aattaAGT------CATCG---TTT----CA----GTTACC---GT------TC---CGATATCATT---C-G---GTTCCG-----GATGAC----ATGT--A-TA------TTTC--GTACCATTCAGTgaccat
gi|17 : caggaatgaaatcgcacctttcagtaaactgaatggtcactgaactcagtcttagtacatggtactgtacttggt------CA-CC---TTT----CA----GTGACC---TTT--CAGTG---GNNNNNNNNN---NNN---NNNNNN-----N-NNNN---NNNNN--N-NNNNN--NNNNNNNNNNNNNNNNNNNNA---CCTTTCAG----TC--AC----------CTTTCAGTCA-CCAT
gi|28 : acaggatgaaatcgA---TTA----CA----TTGACC---TCT--CAGTG---ATCATTCAGT---CCT---CTTTCA-----G-TGAC---CATtccgttaccattcagttcactgaatggcatgt
gi|6 : a---TTA----CA----GGGACC---ATT--CAGGG---ACCTTTAAGT---CAA---GTTTCA-----G-TAGC---CAT
gi|11 : tatttatagaag---TTT----CA----CTGATC---ATT--CAGTT---ACCTTTTAGT---CTA---GTTTCA-----G-TGACCTTTAAGTC-A-T------GTTTTAGTAGCCATTCAGTAA---CATTC-------TGCCAT----------ATTTCAGTGC-CCATC--------------------AAGTC-ATACACTTTTAACAATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGC-GGA-TTATT-TCAGAA-TC-TATTT-TTGCATTTGC-GAA-TTG-TACTAGTAGTG---TTTCAACGACATAT-TAT-GTAT-ATT-------TCAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTAAT------TGTTCATCTATA--TTCATGTAATTTTTCATGTTCAGT---CACA---TTATTTA-AGCATTAATTT-CC-C--CAATGTTCAATGGAATTT---C-AAT-GACCGATTC----ACTGAAATGGCGTATT--A--C----CA-GTGCTT-GT-AAAAATGACTTTC--CTAA--CGC-TGC-ATGA-AA-AATTAAAACA-AA--CTA-TT-TCACAAAA----------------tcagtaacattctatcatattaagtcacacactttaaaacaatttgtgaccaattttcagatatttcagagtatttttttgcattcgcgaaatggtagaagtagagattcaatgacatgtatctatcaagctgtttgtcctcctctgtctctggtagatgtaattgttcatctatattcatgtaacttttaatgttcagttatattatctcagcattcatttcatcactgttgtatgaaatttcaataaacgattcgccaaaaccaatgcttgtacaaataacgttcataacgctgcatgccaaatcaaaacaaaccatttcaaagaaactatatttctaattatttatttaatttcattaaagataaccaaagtagattttttaaaacataaattacattattacaagtcaatcttcatcacattttgaattcactcttttctggcgaaaggtagaccggaatcacagctgcatcaatttcttgttggagatgtcccagttagctaccttcatccactatttgcagggtcatttggatatcgaaatcttgaagctct
gi|15 : cattcgatccttCTTTCAGTGATCA------TCCA-----A-TGAC---CATTC--AGTAAAACTGTTAC------CTTTCAGTGA---CCTTTTAG----Tt
gi|6 : aagatgaaaccttacctttcagtgacatttcagtga---TATTT--A-TAGAA--GTTACAGGGACCATTCAGGGA---CCTTTAAG----TC--AA----------GTTTCAGTAG-CCATTCAGTAACATTCTATCATATTAAGTC-ACACACTTTAAAACAATT-------------------------------------TG-TGACC-AATTTTC-AGA-T-ATT-TCAGAGTAT-T-TTT-TTGCATTCGC-GAA-ATG-G--TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTCATCTATA--TTCATGTAACTTTTAATGTTCAGT---TATA---TTATCTC-AGCATTCATTTCAT-C-AC--TGTTGTATGAAATTT---C-AAT-AAACGATTC----GCCAA----------A--A--C----CA-ATGCTT-GT-ACAAATAACGTTC--ATAA--CGC-TGC-ATGC-CA-AATCAAAACA-AA--CCA-TT-TCAAAGAAACT-------------A-TAT-TTCTA----ATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTTTTTAAAACATAAAT-----TACA--TTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAGACCGGAATCACAGC--TGCATCAATTTCTTGTTG-------GA---G-ATGTCCCA-GTTAG----C------TACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCTgtacttttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatcagtgaccattcagtactctttcagtgaccat
gi|28 : A--ATTACATTGACCTCTCAGTGA---TCATTCAG----TC--CT----------CTTTCAGTGA-CCAT
gi|3 : CCATTCAGTAA----CATTCTG----TC--AT----------ATTTCAGTAC-TCATC--------------------AAGTC-ATACACCTTTAACAATTCG-------------------------TTT------TTTG-TGACC-AATTTTC-AGA-T-ATT-TCAGAG-TA-TATTT-TTGCATTCGC-GAA-CTG-TGCTAGTAGTG---TTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATA--TTCATGTAACTTTTAATGTTCAGT-----CA---TTATCCC-AGCATTCAATT-CT-TCAT--TGTTCAATTATATTT---C-AAT-GAACGATTC----GTTGA----------T--A--C----CA-GTGCTT-GT-AAAAATGACTTTC--ATAA--CGT-TGC-ATGAACA-A-TCAAAACA-AA--TCA-TT-GCACAAAATCAAATAGCAATAACTA-TGT-TTTTT----AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-ATTTGT----A-ATAA--ATTG---CA--TTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAGACTGGAATAA---C--TGCATCAATTTCTC-TTTGGAGCTCGA---G-ATG-CCCA-GTTAG----C------TACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATA---A-TTTATTTCT-TAC--------AAAAAAATGAAAA--TAA--AATGAG-AAAATGCATT------AAAA--GA---T-AA-GCG-TA--A-CTGACC--ACG--ATG-CCTCTAA-G----G-ATAGTGAATAA--ATC-T-ATT----AT------TCCGTT----AAATGCATTT--TCACTTT-ATAT-ACCCATC---A-------TGACAC-CG----TTC-TAGAG-CCCTAGCA-----CCTA-----GA-GAGATGGA--AAA-T-TTCG-GAGG
gi|4 : ttagtagTTTCAATAC-CCAAC--------------------AATTC-ATACACTGATAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTC-GGA-T--TT-TCAAAG-TC-TATTT-TTGCATTCGCCAAA-TTG-CACTAGTAGTA---CTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTC-CCTG-CTCCGGTAAATTGTAAT------TGTT-ATCTATA--TCCTTGCAACTTTTAATGTTCAGT---CATA---TTATCTC-AGCATTCAATC-CT-C-GC--TGTTCAATGAAATTT---C-AAT--AACCATTC----GCTGA-------------A--C----CA---GCTT-GT-ACAAATTA--TTC--ATAAACCGC-TGC-ATGA-CATATTC-AAACA-GA--TCA-TT-TCACAAAA----------------C-TTA-TTTTT----ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGATTTTAAAAAA-AAAATTACTTG--------ATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAGACAGGAATCA---C--TGCATCAATTTCTC-TTT-------GA---G-ATG-TCCA-----------------------------C-TA-TTTGCAGGGTCATTGA-AGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATG-----ATTAATTTTATTCTAGTTGCAAAATAAATGAAAA--TAAACAATATG--AAATGGAT------AGAAT--AA---T-GAGGCGCCA--T-TTGACCAAAAG--ATCGATTCCAA-G----G-ATAA-GAATAAATAACGTAA------AA------TCA-CT----AA--GCATTTTATCACTT
gi|8 : ttcagtagccattcgttaacattctgtcataTTTTAGTAAACCA-C--------------------AAGTC-ATACACTTTTAAAAAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTC-G-A-T-ATTGTCAGAG-ATCTATTT-TTGCTTCCGC-AAAATTGGTACTAGTAGTA---ATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-CATGTAACTTTTAATGT-CAGTCATAATA---TTATTTC-AGCATTCATTC----T-CC--TGTTCAATGAGATTTTTTC-AAT-CAACGA-TT----GCGGC----------T--GTAC----CA-GTGCTTTGT-AAAAATGAATTTC--ATAA--CGC-TGC-ATAA-CA-AATCAAAACA-GA--TCA-TT-TCACAATG----------------C-TATATTTTT--------TTTATT---ATCT-----TTA-A--------------------AAAAAA-CTAAT------TACA--TGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAGACC-GAATCA---C--TGCATCAATTTCTC-TTTG------GA---G-ATA-TCC------G----CT--------------------A-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAaaggtaataccc
gi|12 : tccagtttcagtagcccattagtaacttctgtcacaTTTCAGTAC-CCATC--------------------AAGTC-ATACCCTTTTAACAAATAG-------------------------TCT--GATTTTTT-TTACC-A--TTTCTGGA-T-ATT-TCATAG-TC-TAT-T-TT--------------------------------TTCAATGACATTT-TAT-GTAT-------C-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATG--TTCATGTAACCTTTAATGTCCAGT---CATATCGTTATCTC-AGCATTCCTTT-CTCC-AT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGTCGTGGA----------TTAG--CTCTGTATGTACTT-GTACAAAATGACTTTCCAG-AA--CGC-TGCTATGA-CA-AATCCAAATACAATTTCA-TTCTCATAAAA----------------ACTAT-ATTCTAGCGAT-ATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTT
gi|24 : cattttgtcataTTTCAATAC-CTAAC--------------------AAGTC-ATACACTGTTAAAAATTTA-------------------------TTT--GATTTT---------------C-GGA-T-ATT-TCAAAG-TC-TATTT-CTGCATTCGgttaaatgaatgaaca
gi|23 : tagtcaggcacgtacaattcgtcataGC-TGC-ATGA-CA-AATCAAAACA-AA--TCG-TT-TCACAATA----------------C-TATATTTTT----AT---------TA--TTG--A-TTA-AA-------------------AAAAAA-ATAA-----GTTACA--TGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|7 : -ATGA-CA-TATCAAAACA-GA--TCA-TT-TCACAAAA----------------A-TATAGTTTT----ATTA-TTATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGATTTAAAAAAA-A-AATAAAT--TACT--TGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAGACCGGAATCA---T--TGCATCAATTTCTC-TTTG------GA---G-ATG-TCCA-----------------------------C-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATG---A-TTTATTCTT-TGCata
gi|20 : GATAGATCGGAATCA---C--TGCATCAATTTCTC-TTTG------GG---G-GTG-CCTT-GTTAG----C------TACCATCATCCAC-TA-TTTGCaattaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|9 : TTCTC-TTT-------AA---ACATG-CCAA-GTAAG----TTAT------CATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGGTCA-ATTCC---T-TAC-------ATAAAATATGAAAA--TAA--A-TGC-----ATGTTTT---TGAAGAGCCAAGTCT-GA-CCA-TC--TGTTTATA--AAGGTGTT-GCTCAAA-ACGTGG-AGAGT-AACAG--GAC-C-ATCTTAGATTGTTGTTCAAAT----AAGTGCATTG--TCTTTTT-ATAT-ACACACC---AGGAC---C----C-CG----TTT-TAAAC-CCTGAACC-----AATA-----GG-GAGATTTA--CAA-T-TCCG-AAAGACATTT--ATGA----AATGTT-T--TA-----CGTTGCC-ATGTCAATAATATTTT--ATTTTGCAA---ACTG----A-AAT-ATAAGTAATACTATT-TAT-AGGGA-------AAACA----------CAGTT-TGCAAT--------------------ACCATATGAAAG--------T-------GT------GAGTCAAGA---------------A-T--AATATCCAAAGTG---------AA----T----------------------GTG----CTC----------------------A-----A------------T-----------------------CAC-------T--TAGTAT-T-TT-ACAA------AA--------GAAATTGT----AAATAGA---C-AAGCATAAT---AGC-----ATGG-GTTTATCAAtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TG---A-TTTATTCTT-TAC----------AAAATTG-AAAA-TAA--AATGTG-AAAATGCATA---AAAAAAA--AA---T-AA-GCG-TA--T-TTGACC--AAG--AT--CTTCTAACA----GAATAGAGAAT-A--AAC-T-A------AT------T-ACTCGTAAAAATGCTTTT--TCACTTTAATAT-A-CCATCAGGA-------C----CATG----TTC-GA-AG-CCCGAACC-----TAGA-----GA-G-GATGTA--CA----TTCG-GAGGA---TT--ATTAAA-T-ATGTT-TTATA-----CATGACCTGTGTTTAC-ATATTTTA-ATTACAC-A---ACAG----A-AATAAT-ATTAATGCCATT-GA--AGCA---TGACGACATA----------CA----TGTAACGTG-----------------ATC-TAT----G--------TA------CT------AAATCAGGG---------------C-G--TATAT-CAAGATGATTA-AAA-AA----T----------------------GCT-AGG-TC---AAG-A-------------AATGTCCAAGGGGAAACGTCC--------------------TAAAAC-------T--TA-TAT-TATT-ACAACAA-TTAAATTCA-T--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTC---CCTGA-TTTTATTCACCGCACCTACACC-CCTGGCTA------------T------------AAACACGC--TAATTGTTTTA---ACTGT--AAAAT-CTTGT-ATAT----------TATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAGA-AATA-ATTCA-----------CATGC-ATATTTT-CGGTGAACCCCTATACCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGT--A--------ATCTG--TATAATATTGAAAAATGCACCATGAG
gi|7 : gcGACC--AAG--ATC-CTTCTAA-A----G-ATAATGAATAA--AAC-T-A------A---------AACT----A--TGCATTT--TCACTTT-ATAT-ACCCAAC---AGGA----C----CATG----TAC-TAGAG-CCCGAACC-----CCTA-----GA-GAGATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAA-TAATGTT-T--TATA---CATGACC-GTGTTTACAATATTTT--AATCCACAA---ACAG----A-AGTAATAATTAATGTTATT-GGT-ACGAAAGTAGAGAAGCA----------TA----CG--CC--------------------ATA-CAT----GTAATATGAT-------CTAAGACAAAATCAGAT---------------C-G--TACAT-CAAGCTGATTATTAA-AA----A----------------------GTG-CAAGTC---AAG-A-------------AA-----A------------T--------------------T
gi|16 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagacaTGCATTT--TCACTAT-GTAT-ATACATC---AATTTAGGC----CATG----CCC-CAAAG-CCTAAACCTTTGACCTGTGTTTGG-GAATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-T--TT-----TATTGCT-GTGCAAACAATA-TTT--A-TTCACAATGCACAG----A-AGTAAT
gi|10 : TTT--TCACTTT-ATATTACCCATC---A-------G----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGAGAGATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAA-TAATGTTGT--TAGTAACCATGGCC-GTGTTTACAATATTTTTAAATCCACAA---ACAG----ACAATAATAATTAATGCCATT-GA--AGCATA--CGACAA-TA----------CATTGTTA--ACTGTG----------------ATCATAT----G--------T-------CT------AAATCACGG---------------C-G--TATAT-CAA-ATAATTGTTAA-AAAAGCT----------------------GCT-AGGTTC---AAGAA-------------AA-----A------------TGTCCAAGAGGAAACGCCCTGTAATAC-------ACTTA-TATAT-TC-ACAAC-ATTAAAATTCATT-AAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGT----CCTGATTTTTATTAACC---------CCACCC--CCAACCCACCCACATTCCCACTGCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTAg
gi|27 : ----TTC-TAGAG-CCCAAGCC-----CATA-----GA-GAAATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAA-AAATGTT-T--T
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCAAAGCAGCATACGATTTAACA----TG--AT--------------------ATGATAT----T--------TTTTTTTACC------AAATCAGGACCCTCGTGGGCATAGA-GCATACGT-GTAGATGATTGTTAACAA----TACATATAAAAAAGTACGAGACAGTA-AGATTTTCGAAG-G-------------AAC----A------------TAACC----------------TAACAC-------A--TA-TTT-T-TGTACAAC-T-TGAAATACA-T-AAAAATATATGAAAATAGA---C-AAGCATAATAA
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGG---A-ACACA-ATCCAACA-TTT--CATCGACGTA----------------TATATATGTAC
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG---------CA-A-CA--CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTAAATCCTGTATAT-TAATT----GA-T--AAAATGCACCA-GTGAGAAATAGATGTATAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Unaligned ( gi|26 ): TGTATATTAATTGATAAAATGCACCTGTGTGAAATACATGTAGAATTCTCTGGAATAGTTGTTACGAGTATTTCTTTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 11111 222222222222 3333333333333333333333333333333333333333333333 111 1111111 22222222222222 111 111111 111 444444444444444444444444 11 1 33333333333333333333333333333 4444444444444444444444444 33333333333 111111 111 11111111 1111 22222222222 11111 2222222222222 1111111111 33 44444444 111111 66666666666666666666666666666666 11111111 11111 11111111 444444444444 1 333333 11 1 222222222 555555555 11111 11111 222222222 2222 333 0000000000000000000000000000000000000000000000000000000000000000000000000000 111111 1111 1111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111 11 11 111 111 1 55555555555555555555555555555 33 44444444444 2 22 55555555555555555 1 1111111111111111111111111111111111111111111111111111111111111 11 000000000000000000000000 2 11
lowQualScore : 2 6 3 4 6 22222 222222222222 55 1 5 1 7777777777777777777777777777777777777777777777 333 0 3333333 66666666666666 1 4 1 666 0 000000 000 1 777777777777777777777777 1 1 55 1 1 3 3 44444444444444444444444444444 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 2 0 22222222222 5 5 3 1 5 444444 0 5 777 5 44444444 888 5 66 0000 5 5 77777777777 5 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 55 66 4444444444444 66 4 1 0 88 1 66 4 4 6 0 3 3333333333 2 66 22 888 0 1 5 5 11111111 5 888 66 222222 66 66666666666666666666666666666666 0 4 4 0 1 22222222 44444 6 1 0 1 66 99999999 000000000000 6 8 99 1 2 0 8 444444 8 8 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 000000000 88 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 000000000 5 77 1 5 2222 1 5 1 5 999 1 222 22 1 5555555555555555555555555555555555555555555555555555555555555555555555555555 5 666666 1 2222 8888888 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 6 999999999 6 55 6 6 7777 66 3 111 6 666 88 8 3 88 0 99999999999999999999999999999 00 00000000000 3 11 77777777777777777 3 22 77 0 1 1 7 0 1 1 7 7 6 3 4 0 3 9999999999999999999999999999999999999999999999999999999999999 44 000000000000000000000000 3 0 88 1 3
lowQualScore : . . . . . ..... ............ .. . . . .............................................. ... . ....... .............. . . . ... . ...... ... . ........................ . . .. . . . . ............................. . . . . ......................... ... . . . . .. . .. . . ... . . . . ........... . . . . . ...... . . ... . ........ ... . .. .... . . ........... . ..... . . . . .. . . . .. . . . . .. .. ............. .. . . . .. . .. . . . . . .......... . .. .. ... . . . . ........ . ... .. ...... .. ................................ . . . . . ........ ..... . . . . .. ........ ............ . . .. . . . . ...... . . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . ......... .. . . . . ..... ..... ... . .. .. . . ... .. .. . ......... . .. . . .... . . . . ... . ... .. . ............................................................................ . ...... . .... ....... . ...................................................................................... . . ......... . .. . . .... .. . ... . ... .. . . .. . ............................. .. ........... . .. ................. . .. .. . . . . . . . . . . . . . . ............................................................. .. ........................ . . .. . .
lowQualScore : 5 5 2 3 7 55555 222222222222 44 5 0 0 5555555555555555555555555555555555555555555555 333 3 3333333 99999999999999 0 4 0 999 5 888888 222 7 111111111111111111111111 0 1 00 7 0 6 6 77777777777777777777777777777 6 6 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 8 4 55555555555 0 0 9 0 0 444444 9 0 555 0 22222222 888 0 44 6666 0 0 22222222222 0 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 44 11 4444444444444 11 4 9 8 11 8 11 4 4 7 1 9 9999999999 0 11 99 888 5 0 0 0 00000000 0 888 99 888888 11 99999999999999999999999999999999 1 4 4 1 0 55555555 33333 6 6 7 0 77 66666666 888888888888 7 0 22 7 2 8 0 444444 0 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 000000000 11 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 666666666 7 99 0 7 1111 7 0 4 7 444 7 111 11 7 7777777777777777777777777777777777777777777777777777777777777777777777777777 7 444444 0 1111 6666666 4 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666 7 7 000000000 7 88 7 7 8888 55 7 777 7 666 66 0 2 11 0 00000000000000000000000000000 77 00000000000 3 33 00000000000000000 2 00 33 7 0 0 3 7 0 0 3 3 5 2 5 0 2 8888888888888888888888888888888888888888888888888888888888888 00 000000000000000000000000 2 0 88 0 7
consensus : AGTGANCATTCAGTCACCTTTCAG-TGACCTT-----TCAGT--CA--------CC-TTTCAG-TGA---------C----CAT----T-CA---GTN---------------ACN--TTTCAGTGA----TC-ATTC-------------AGTCACCTTTCAGTG-ACCNTTCAGTTCNCTTTCAG-TCACCTTTCAGT--GACCATTTATAG---A-GT-TACAG--G-A--CCATTCAGTGACCATTCNGTCATATTTCAGT-AC-CC--------------------AT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTTC-T-CGC--TGTTCAATGAAATTT---CAA-TG-AACGAT----T-CG-CTGA----------TA-CC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCATT-T-CAC-A-AAAC-T--ATA-------------TTTT--T-ATTATTTATT-TAATTTC--ATT-A-AACATAGCCAAAGTAGA-TT-T-TAAAAAAA--TAA--ATT---ACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCT-G-CGAATGATAGA-CCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCAG-TTAGC------TACC---------ATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACAN-CAATAGATGAT-------TTATTCTTTACTA----NAAA--AAA-TGAAAAATAA--AATGCGAAAA-TGCATTA---AAAAAAAAT-AA-GCG-TAT--TTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCA------GGACCA-CGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTATA-----CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG------GCGTACAT----CA-------AGATGATTATTAA---------------AAA---TGCGAGG----------TTC-AAGA-------------AA---------------ACG--C----T-AA-CACG--T-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGA-TTTT-ATCAACCCC-CCTCCAACC-CACCCACATTCCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA--GTA----------------A-ATATATGTACATTT-AGTTTGCGTA-AT----TAT---TGATTA-AA-ATTGATAAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCATTCAGTCACTTTTCAG-TGACCTT-----TCAGT--CA--------CN-TTTCAG-TNA---------C----CAT----T-CA---GTN---------------ACA--TTTCAGTGA----TC-ATTN-------------AGTCACNTTTCAGTG-ACCNTTCAGTCCNCTTTCAG-TCAANTTTCAGT--GACCATTTATAG---A-GT-TACAG--G-A--CCNTTCAGTGACCNTTCAGTCANATTTCAGT-AC-CC--------------------AT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTANTTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCNGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTTC-T-CGC--TGTTCAATGAAATTT---CAA-TG-AACGAT----T-CG-CTGA----------TA-CC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCATT-T-CAC-A-AAAN-T--ATA-------------TTTT--T-ATTATTTATT-TAATTTC--ATT-A-AACATAGCCAAAGTAGA-TT-T-TAAAAAAA--TAAT-ATT---ACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCT-G-CGAATGATAGA-CCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCAG-TTAGCT-----TACC---------ATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTNTTGAAAAA--AGA-----ACACATGATTATNTCAACAN-CAATAGATGAN-------TTATTTTTTACTA----NAAA--AAA-TGAAAAATAA--AATGCGAAAA-TGCATTA---AAAAAAAAT-AA-GCG-TAT--TTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCA------G--CCA-CGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-T--TA-----CATGGCC-GTGTTTACAATATTTT--ANTC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG------GNGTACAT----CA-------AGATGATTATTAA---------------AA----TGCGAGG----------TTC-AAGA-------------AA---------------ATG--C----T-AA-CACA--T-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCNTGA-TTTT-ATCAACCCC-CCTCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACNNTNTCAAAAATCCTTGNTATATCTACATGATTTATGGTCATGTACATGNNCGCCAATTGGCAGTNTTTNATAGCCAGNTGACGATNAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATC-A--GT-----------------A-ATATATGTACATTT-GGTTTGCGTAAATCCTGTATATCTGATTATAANATTGA-AAAATGCACCATGNGAGAAATAGATGTATAA
gi|1 : AGTGACCATTTAGTCACTTCTCAG-AGACCTT-----TCAGT--CA--------CA-TTTTTG-TAA---------C----CTT----T-CA---ATC---------------ACA--TTTCAGTAA----TC-ATTG-------------AGTCACATTTCAGTG-ACCTTTCAGTCCGCTTTCAG-TCAAGTTTCAGT--GACTATGTATAG---AAGT-TACGG--GGA--CCTTTCAGTGATCTTTAAGTGAAGTTTCAGT-AG-CC--------------------AT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTTG-T-TGC--TGTTCAATGGCATTT---CAA-TG-AACGAC----T-TG-CTGA----------TG-CC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCATT-T-CAC-A-AAAG-T--AT--------------TTTT--T-ATAATTTATT-TAATTTC--ATT-A-AACATAACCAAAGTATA-TT-T-AAGAAAAA--TAATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCT-GGCGAATGATCGA-CCGGAATCA---C--TGCATCAATTTCTTTTTG-------AG--ATA-CCCAG-TTAGCTATATGTACC---------ATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACAG-CAATAGATGAA-------TTACTTTTTACCA----AAAA--AAAATGAAA--TAA--AGTGTGAAAA-TGCTTTT---AAAAAAAAT-GA-GCG-TAT--TTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TCA---------CC--CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T--TA-----CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG------AAGTACAT----CA-------AGATGATTATTAA---------------AA----TGTGAGA----------TTC-AAGA-------------AA---------------AT--------T-AA-CACA--T-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTT-ATCAACCCC-CCTTTA-----------ATT-------------AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA--GTA----------------A-ATATATGTACATTTAAGTTTGCGT--AT----TAT---TGATCAGAAGA-TGA-AAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCA------GGACGA-TGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGT--TAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG------GCGTATAT----CA-------A-ATAATTGTTAA---------------AAAAGCTGCTAGG----------TTC-AAGA-------------AAAATGTCCAAGAGGAAACG--CCCTGT-AA-TACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGA-TTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : C-ATTC-------------GATCCTTTTTCACTG-ATCATTCAGTTACCTTTTAG-TCTAGTTTCAGT--GACC-TTTA-AGTC-ATGT-TTTAG--T-AG-CCATTCAGTAAC-ATTCTGCCATATTTCAGT-GC-CC--------------------AT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTAAT------TGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTTC-C-C-CAATGTTCAATGGAATTT---CAA-TG-ACCGAT----T-CA-CTGAAATGGCGTATTA-CC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTATT-T-CAC-A-AAA
gi|12 : CATTTTGTCATATTTCAGT-AC-CC--------------------AT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTTC-TCCAT--TGTGTAATGAAATTT---CAA-TG-AACGATTTCGT-CG-TGGAT---------TA-GCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCATTCT-CATAA-AAAC-T--ATA-------------TTCTAGC-GATATTTATTCTAATTTCTAATT-T-ATAATAGCCAAAGTATAGTTGT-TAAATGAA--TGAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--CAT----------------------------ATATGTACATTT-GGTTTGCGTAAATCCTGTAT-----ATTA----ATTGATAAAATGCACCA-GTGAGAAATAGATGTATAAaca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG----TACGAGACAGTAAGATTTTCGAAGG-------------AAC--------------ATAACC----T-AA-CACA--T-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : ACCTT-----TCAGT--GA--------CA-TTTCAG-TGAACTAAAAGGT----CAC----T-GAAAGGTA---------------ACAG-TTTTACTGAATGGTC-ATTGGATGATCACTGAAAGGTACTTTTCAGTC-ACCTTTCAGTTACCATTCCG-TTACCATTCAGTTCAACGA---ATGG---C-GTGTACA----------TTTCAGTGAAAATTCAGTTACCTATCAGT-GA-CC--------------------AT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccttAGT---A--------CC-TTTCAG-TGA---------T----CAT----C-CA---ATG---------------ACC--ATTCAGTAA-----A-ACT---------------GTTACCTTTCAGTG-ACCTTTTAGTTCACTgtgaccat
gi|15 : aagatgaaaccttacctttcagtgacatttcACTTTTCAG-TCACCTT-----TCAGT--TA--------CC-ATTCCG-TTA---------C----CAT----T-CA---GTTCAACGAATGGCGTGTACA--TTTCAGTGA----AA-ATTC-------------AGTTACCTATCAGTG-ACCATTCAGTACTCTTTCAG-Ttttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatcagtgaccattcagtactctttcagtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGG--CCA-TGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-T--TT-----TATTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAATgaccat
gi|17 : CACCTTTCAG-TGACCTT-----TCAGT--GG--------NN-NNNNNN-NNN---------N----NNN----N-NN---NNN---------------NNN--NNNNNNNNN----NN-NNNN-------------NNNNNNNNNNNNNNN-ACCTTTCAGTCACCTTTCAG-TCACCATTCCGT--TACCATTCAg
gi|17 : acaggatgaaatcgACCTT-----TCAGT--CA--------CC-TTTCAG-TCA---------C----CAT----T-CC---GTT---------------ACC--ATTCAGT------TC-ACTG-------------AATgttcactgaatggcatgt
gi|2 : acaggatgaaatcgcacctttcagtgacctttcagtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTGAACTTTCAGTTCCCTTTCAG-TGACCATATGAATCAGT--CAG-------CC-TTggcatgt
gi|2 : AGTGAACATC--GTC---TATTAG-TGACCTT-----TCAGTGACATTTAATTCCC-TTTCCGTTGA---------CCA--CAT----T-CA---GTC---------------ACCTTTTTCAGCGA----CC-ATCC-------------AGTCATTTTCAAGCGAACCATTCAGT-CACATTCAGATGACCTTTCAGG--CACCATTT-T-----A-GT--------G-A--CTTTTCA-TGACCTT--AGTTACATTTCAGTGAC-CC--------------------ATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCATTCAGTCACATT-CAGATGACCTT-----TCAGG--CA--------CCATTTTAG-TGA---------CTTTTCATGACCT-TA---GTT---------------ACA--TTTCAGTGA----CCCATTC-------------CATCACAATTCAGTG-ACTTTTCAAT-----TGCA-------TTTATGT--GACCTTTT-CAGTCAA-GT-T-CAG--T-AAGCCATT--GTAAC-ATTC-GTCATATTTTAAT-GC-CC--------------------CT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCCT-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATT-TTCAC-C-AAATCT--ATA-------------TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAAAAA--TACA-ATT-------TATTACAAGTCCATTTTCATCACATCTT-GT-ATC-ACTCTCTTCT-G-T------TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGCT-----CACTGTATAGACTATTATT-AC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTTTTGATA----G---------TGAAAATTAA--A-TGCGAAAAATGCACCACAAAAAAAAAAT-AAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAGT----G--CCC-CGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTATA-----CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG------GCGAACAT----CA-------AGATGATTATTAA---------------AAAG--TGC-AAG----------TCC-AAGACATTGTCTAAGGGAA---------------ACG--TCG--T-AA-CATG--TTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTT-ATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAGA-TCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTTG-TTAGC------TACC---------ATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATC-GACGT-----------------ATATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCGTT-T-CAC-A-ATAC-T--ATA-------------TTTT--T-ATTA-----------TTG--ATT-A-AA-------AAA------------AAA---A--TAA--GTT---ACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCT-G-
gi|24 : ACAATTC-GTCATATTTCAAT-AC-CT--------------------AA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtATTGATAAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattaTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-T--Tttctctggaatagttgttacgagtatttcttttc
gi|28 : AT----TACA---TTG---------------ACC--TCTCAGTGA----TC-ATTC-------------AGTCCTCTTTCAGTG-ACCAT
gi|3 : a--CCATTCAGTAAC-ATTCTGTCATATTTCAGT-AC-TC--------------------AT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATTC-TTCAT--TGTTCAATTATATTT---CAA-TG-AACGAT----T-CG-TTGA----------TA-CC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCATT-G-CAC-A-AAAT-CAAATAGCAATAACTATGTTTTT--T-AATATTCATT-AAATTTC--ATT-G-AGCATAGACAAAGTA-A-TT-TGT-----AA--TAA--ATT---GCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGG-CGAATGATAGA-CTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCAG-TTAGC------TACC---------ATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACCC-TAATAGATAAT-------TTATTTCTTAC------AAAA--AAA-TG-AAAATAA--AATGAGAAAA-TGCATT------AAAAGAT-AA-GCG-TAA--CTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT-----G--ACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : ttagtag--CCATTC-GTTAACATTCTGTCATATTTCAAT-AC-CC--------------------AA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTAAT------TGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATCC-T-CGC--TGTTCAATGAAATTT---CAA-T--AACCAT----T-CG-CTGA-----------A-CC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCATT-T-CAC-A-AAAC-T---TA-------------TTTT--T-ATTA-TTATT-TAA-TTC--ATT-A-AACATAGTCTAA-TAGA-TT-T-TAAAAAAA---AA--ATT---ACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT-------TGATAGA-CAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG-----------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACAT-CAATAGATGAT-------TAATTTTATTCTAGTTGCAAAATAAA-TG-AAAATAAACAATATG-AAA-TGGAT------AGAATAATGAG-GCGCCAT--TTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : ttcagtag-----ACACATGGTTATATCAACAG-CAATGG-TGAT-------TTATTCTTTAC---------A--AAA-TTGAAAATAA--AATGTGAAAA-TGCATAA---AAAAAAAAT-AA-GCG-TAT--TTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCA------GGACCA-TGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTATA-----CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG------GCGTATAT----CA-------AGATGATTA-AAA---------------AA----TGCTAGG-----------TC-AAGAAATGTCCAAGGGGAA---------------ACGTCC----T-AA-AACT--T-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTT-AT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTGT----AAAAT-CTTG-TATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA--GTATATTTAACGTGTACACA-GTATGTATACATTT-AGTTTGCGTA----------ATCTG--TATAATATTGA-AAAATGCACCATGAG
gi|6 : gcATTTATAG---AAGT-TACAG--GGA--CCATTCAGGGACCTTTAAGTCAAGTTTCAGT-AG-CCATTCAGTAACATTCTATCATAT-------TAAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTTCAT-CAC--TGTTGTATGAAATTT---CAA-TA-AACGAT----T-CG-CCAA----------AA-CC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCATT-T-CAA-AGAAAC-T--ATA-------------TTTC--TAATTATTTATT-TAATTTC--ATT-A-AAGATAACCAAAGTAGATTT-T-TTAAAACA--TAA--ATT---ACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGG-CGAAAGGTAGA-CCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCAG-TTAGC------TACC---------TTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : t-ATGACATATCAAAACA-GA--TCATT-T-CAC-A-AAAA-T--ATA-------------GTTT--T-ATTATT-ATT-TAATCTC--ATT-A-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATAA--ATT---ACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT--------TGATAGA-CCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG-----------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACAG-CAATAGATGAT-------TTATTCTTTGC
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACA------GGACCA-TGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTATA-----CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA------TCGTACAT----CA-------AGCTGATTATTAA---------------AAAG--TGCAAG------------TC-AAGA-------------AA---------------ATaattaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagaca---A-GT-TTCAGTAG-C--CCATT-AGTAAC--TTCTGTCACATTTTAGT-AAACC--------------------A--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT-C-T-C-C--TGTTCAATGAGATTTTTTCAA-TC-AACGAT----TGCGGCTG-----------TA-CC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCATT-T-CAC-A-ATGC-T--ATA-------------TTTT--T-----TTTATT---ATCT----TT-A-AA-----------------------AAAAAC--TA---ATT---ACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC--------TGATAGA-CC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT-----------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAt
gi|9 : tccTTCTCTTTA------AAC--ATG-CCAAG-TAAG-T-----TATC---------ATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACAC-CAGTAGATGGT-------CAATTCCTTAC-A----TAAA--ATA-TG-AAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCA------GGACCC-CGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-T--TA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AAT-ATAAGTAATACTATT-TAT-AGGGA--------AAACACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA------------GTGTGAGT----CA-------AGA--A----TAA---------------TA----TCCAAAG----------T-----GA-------------AT---------------GTG--C----TCAATCACT--T-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTT-ATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGGAATGAAATCGCACCTTTCAGTAAACTGAATGGTCACTGAACTCAGTCTTAGTACATGGTACTGTACTTGGTAGTCATCGTTTCAGTTACCGTTCCGATATCATTCGGTTCCGGATGACATGTATATTTCGTACCATTCAGT
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333 2222 1111 2222222222222222 1111 1111111 22222222222222 111111111 666666666666666666666666666666666 1111 33333333333333333333333333333 4444444444444444444444444 33333333333 111111 111 111111 1111 333333333333 11111 22222222222222 1111111111 11111 4444444 1111111 444444444444444444444444444444444 11111111 11111 3333333 4444444444444 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 1 11 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 111 33333333 111 11
lowQualScore : 1 222222222222 5 6 66 5 3 5 0000 0000 5 777 8888888888888888 1111 5555555 22222222222222 3 88888 3 1 222222222 4 8 0 5 5 666666666666666666666666666666666 0 3 6666 7 44 3 33 00000000000000000000000000000 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 5 111111 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 5555555555555 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 7 66666 6 55 6 6 7777 66 3 111 6 5 66 3 88 0 2 5555555555555555555 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 7 555 00000000 3 777 88 1 1
lowQualScore : . ............ . . .. . . . .... .... . ... ................ .... ....... .............. . ..... . . ......... . . . . . ................................. . . .... . .. . .. ............................. . . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . ...... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ............. . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . . .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . . ... ........ . ... .. . .
lowQualScore : 0 555555555555 2 7 77 7 0 7 0000 6666 0 888 8888888888888888 6666 0000000 33333333333333 6 33333 3 0 666666666 4 4 5 0 0 333333333333333333333333333333333 3 6 8888 5 66 3 88 33333333333333333333333333333 3 3 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 444444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 0000000 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 77 9999999 99 5555555555555 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 8 77777 7 88 7 7 8888 55 7 777 7 0 66 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 3 333 00000000 2 000 88 0 0
consensus : AGTGACCAT------TTA---GTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCNG-TGAC----CAT----T-CA---GTN---------------AC--N-TTTCAGTGA----CC-ATT---------C----AGTCACC-TT-----TCAGTG-ACCNTTCAGT-----TN-NCTTTCAG-TNACCTTT-CAG-T--GACCATTTATAG--A-GT-T-CAG--G-A--CCATTCAG-TGAC--CATTCNGTCA--TATTTCAGT-AC-CC--------------------AT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATG-AAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTAATT-CTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGANCAT------TCA---GTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCAG-TGAC----CAT----T-CA---GTN---------------AC--N-TTTCAGTGA----TC-ATT---------C----AGTCACC-TT-----TCAGTG-ACCNTTCAGT-----TC-NCTTTCAG-TCACCTTT-CAG-T--GACCATTTATAG--A-GT-TACAG--G-A--CCATTCAG-TGAC--CATTCNGTCA--TATTTCAGT-AC-CC--------------------AT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCT-GCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-NCAATAGATGA-------TTTATTCT--TTACT-ANAAAAAATGAAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACGT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGA-TTTTATCAACCCC-CCTCCAACC-CACCCACATTCCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTAATTATTG---ATTAAAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTA---GTCACTTCTCAG-AGACCTTTCAGTCACA-TTTTTG-TAAC----CTT----T-CA---ATC---------------AC--A-TTTCAGTAA----TC-ATT---------G----AGTCACA-TT-----TCAGTG-ACCTTTCAGT-----CC-GCTTTCAG-TCAAGTTT-CAG-T--GACTATGTATAG--AAGT-TACGG--GGA--CCTTTCAG-TGAT--CTTTAAGTGA--AGTTTCAGT-AG-CC--------------------AT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG--AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGT-ATTATTG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGT-CCTGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : C-ATT---------C----GATCCTT-TT-----TCACTG-ATCATTCAGT-----TA-CCTTTTAG-TCTAGTTT-CAG-T--GACC-TTTA-AGTCATGT-TTTAG--T-AG-CCATTCAG-TAAC---ATTCTGCCA--TATTTCAGT-GC-CC--------------------AT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTA------ATTGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : --CATTTTGTCA--TATTTCAGT-AC-CC--------------------AT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTAAATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACATTTCAGTGAAC-T--AAA-AGGT----CAC----T-GAAAGGTA---------------AC--AGTTTTACTGAATGGTC-ATTGGATGATCACTGAAAGGTACT-TT-----TCAGTC-ACCTTTCAGT-----TA-CCATTCCG-TTACCATT-CAG-TTCAACGA---ATGG--C-GTGTACAT----------TTCAG-TGAA--AATTCAGTTA--CCTATCAGT-GA-CC--------------------AT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccAGT-ACC-TTTCAG-TGAT----CAT----C-CA---ATG---------------AC--C-ATTCAGTAA-----A-ACT---------------GTTACC-TT-----TCAGTG-ACCTTTTAGT-----TC-ACTgtgaccat
gi|15 : aagatgaaaccttacctttcagtgacatttcTGATCAC------TGAAAGGT-ACTTTTCAG-TCACCTTTCAGTTACC-ATTCCG-TTAC----CAT----T-CA---GTTCAACGAATGGCGTGTAC--A-TTTCAGTGA----AA-ATT---------C----AGTTACC-TA-----TCAGTG-ACCATTCAGT-----AC-TCTTTCAG-TGACCtttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatcagtgaccattcagtactctttcagtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggaTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAATat
gi|17 : CACCTTTCAG-TGACCTTTCAGTGGNN-NNNNNN-NNNN----NNN----N-NN---NNN---------------NN--N-NNNNNNNNN----NN-NNN---------N----NNNNNNN-NN-----NNNNNN-ACCTTTCAGT-----CA-CCTTTCAG-TCACCATT-CCG-T--TACCATTCAg
gi|18 : acaggatgaaatcgT-----TCAGTG-ACCATTCAGT-----TT-ACTgttcactgaatggcatgt
gi|18 : caggaatgaaatcgcacctttc----AGTCATCGTT-----TCAGTT-ACCGTTCCGA-----TA-TCATTCGG-T-----TC-CGGAT--GAC-ATGTATA------T-TTC-G--T-A--CCATTCAG-Tctcagtcttagtacatggtactgtacttggtagtcatcgtttcagttaccgttccgatatcattcggttccggatgacatgtatatttcgtaccattcagt
gi|2 : caggaatgaaatcgcacctttcagtaaactgaatggtcactgaactcagtcttagtacatggtactgtacttggtA---GTG---------------AA--C-TTTCAGTTC----CC-TTT---------C----AGTGACC-ATATGAATCAGTC-AGCCTT-AGTGAACATCGTCTATTAG-TGACCTTT-CAG-T--GA-CATTT------A-AT-T-C---------CCTTTCCGTTGACCACATTCAGTCACCTTTTTCAGC-GA-CC--------------------AT-------CCAGTC-A-T
gi|2 : AGTGAACATCGTCTATTA---GTGACCTTTCAG-TGACATTTAATTC-CC-TTTCCGTTGACCA--CAT----T-CA---GTC---------------ACCTT-TTTCAGCGA----CC-ATC---------C----AGTCATT-TT-----CAAGCGAACCATTCAG------TC-ACATTCAGATGACCTTT-CAG-G--CACCATTT-T----A-GT--------G-A--CTTTTCA--TGAC--C--TTAGTTA--CATTTCAGTGAC-CC--------------------ATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCA---GTCACATT-CAGATGACCTTTCAGGCACCATTTTAG-TGACTTTTCATGACCT-TA---GTT---------------AC--A-TTTCAGTGA----CCCATT---------C----CATCACA-AT-----TCAGTG-ACTTTTCAAT-----TG-CATTTATG-TGACCTTTTCAG-T-----CA---------A-GT-T-CAG--T-AAGCCATT--G-TAAC---ATTC-GTCA--TATTTTAAT-GC-CC--------------------CT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCT-GT------TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTGAT-AG------TG-AAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCT-G
gi|24 : AC--AATTC-GTCA--TATTTCAAT-AC-CT--------------------AA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : AT----TACA---TTG---------------AC--C-TCTCAGTGA----TC-ATT---------C----AGTCCTC-TT-----TCAGTG-ACCAT
gi|3 : a--CCATTCAG-TAAC---ATTCTGTCA--TATTTCAGT-AC-TC--------------------AT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATT-C-TTCAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATG-AAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : ttagtag--CCATTC-G-TTAA--CATTCTGTCA--TATTTCAAT-AC-CC--------------------AA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTA------ATTGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATG-AAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : ttcagtag-----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC------AAAATTGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGTAAT--CTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcATTTATAG--AAGT-TACAG--GGA--CCATTCAG-GGAC--CTTTAAGTCA--AGTTTCAGT-AG-CCATTCAGTAACATTCTATCATAT-------TAAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : t-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Aaattaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagaca--A-GT-TTCAGTAG-C--CCATT-AG-TAAC----TTCTGTCA--CATTTTAGT-AAACC--------------------A--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATG-AAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 2222 1111 2222222222222222 1111 1111111 22222222222222 111111 8888888888888888888888888888888888888888888888888888888888 1111 33333333333333333333333333333 4444444444444444444444444 33333333333 111111 111 111111 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 444444444444444444444444444444444 11111111 11111 3333333 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 22 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 11111 22222222 111 11
lowQualScore : 888888 6 66 5 1 5 0000 0000 5 777 8888888888888888 1111 4444444 22222222222222 3 99999 3 1 111111 22 4 2 4 1111111111111111111111111111111111111111111111111111111111 3 4444 7 44 3 33 00000000000000000000000000000 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 5 111111 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 555 11 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 66666 99999999 3 777 88 1 1
lowQualScore : ...... . .. . . . .... .... . ... ................ .... ....... .............. . ..... . . ...... .. . . . .......................................................... . .... . .. . .. ............................. . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . ...... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . ... .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . ..... ........ . ... .. . .
lowQualScore : 333333 7 77 7 0 7 0000 6666 0 888 8888888888888888 6666 2222222 33333333333333 6 11111 6 0 555555 00 4 6 4 6666666666666666666666666666666666666666666666666666666666 3 8888 5 66 3 88 33333333333333333333333333333 6 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 444444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 000 00 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 00000 77777777 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCNG-TGAC----CAT----T-CA---GT---------------NAC--N-TTTCAGTGA----CC-ATT---------C----AGTCACC-TT-----TCAGTG-ACCNTTCAG------TTNCCTTTCAG-TNACCTTT-CAG---------TGAC-----CATTT--A-T-A------A-GT------T-CAG--N-A--CCATTCAG-TGAC--CATTCNGTCA--TATTTCAGT-AC-CC--------------------AT-------CAAGTC-ATACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGT-AATNCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCNG-TGAC----CAT----T-CA---GT---------------NAC--N-TTTCAGTGA----CC-ATT---------C----AGTCACC-TT-----TCAGTG-ACCNTTCAG------TTNNCTTTCAG-TNACCTTT-CAG---------TGAC-----CATTT--A-T-A-----GA-GT------T-CAG--G-A--CCATTCAG-TGAC--CATTCNGTCA--TATTTCAGT-AC-CC--------------------AT-------CAAGTC-ATACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGT-AATTCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCTTTCAGTCACA-TTTTTG-TAAC----CTT----T-CA---AT---------------CAC--A-TTTCAGTAA----TC-ATT---------G----AGTCACA-TT-----TCAGTG-ACCTTTCAG------TCCGCTTTCAG-TCAAGTTT-CAG---------TGAC-----TATGT--A-T-A-----GAAGT------TACGG--GGA--CCTTTCAG-TGAT--CTTTAAGTGA--AGTTTCAGT-AG-CC--------------------AT-------CAAGTC-ATACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGT-ATTATTG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : C-ATT---------C----GATCCTT-TT-----TCACTG-ATCATTCAG------TTACCTTTTAG-TCTAGTTT-CAG---------TGAC-----C-TTT--A----------A-GTCATGTTT-TAG--T-AG-CCATTCAG-TAAC---ATTCTGCCA--TATTTCAGT-GC-CC--------------------AT-------CAAGTC-ATACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTA------ATTGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : --CATTTTGTCA--TATTTCAGT-AC-CC--------------------AT-------CAAGTC-ATACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTAAATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACATTTCAGTGAAC-T--AAA-AGGT----CAC----T-GAAAGGT---------------AAC--AGTTTTACTGAATGGTC-ATTGGATGATCACTGAAAGGTACT-TT-----TCAGTC-ACCTTTCAG------TTACCATTCCG-TTACCATT-CAGTTCAACGAATGGCGTGTACATTTCAG-TGA-----AA-AT------T-CAGT-T-A--CCTATCAG-TGAC--CATTCAGTAC--TCTTTCAGT-GA-CC--------------------AT-------
gi|15 : aagatgaaaccAGT-ACC-TTTCAG-TGAT----CAT----C-CA---AT---------------GAC--C-ATTCAGTAA----A--ACT---------------GTTACC-TT-----TCAGTG-ACCTTTTAG------TTCACT
gi|15 : aagatgaaaccttacctttcagtgacatttcACTTTTCAG-TCACCTTTCAGTTACC-ATTCCG-TTAC----CAT----T-CA---GTTCAACGAATGGCGTGTAC--A-TTTCAGTGA----AA-ATT---------C----AGTTACC-TA-----TCAGTG-ACCATTCAG------TACTCTTTCAG-TGACCtttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatcagtgaccattcagtactctttcagtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAATat
gi|17 : CACCTTTCAG-TGACCTTTCAGTGGNN-NNNNNN-NNNN----NNN----N-NN---NN---------------NNN--N-NNNNNNNNN----NN-NNN---------N----NNNNNNN-NN-----NNNNNN-ACCTTTCAG------TCACCTTTCAG-TCACCATT-CCG---------TTAC-----CATTC-------------A-GT------T-CAg
gi|18 : acaggatgaaatcg-CAG---------T-AC-----CATGT--ACT-AAGACTGA-GT------T-CAGT-G-A--CCATTCAG-Tctgaatggcatgt
gi|18 : caggaatgaaatcgcacctttcagtaa----AGTCATCGTT-----TCAGTT-ACCGTTCCG------ATATCATTCGG------TTC-CGGA--------TGA------CATGT--A-T-A---------T------T-TCG--T-A--CCATTCAG-Ttacttggtagtcatcgtttcagttaccgttccgatatcattcggttccggatgacatgtatatttcgtaccattcagt
gi|2 : caggaatgaaatcgcacctttcagtaaactgaatggtcactgaactcagtcttagtacatggtactgtacttggtA---GT---------------GAA--C-TTTCAGTTC----CC-TTT---------C----AGTGACC-ATATGAATCAGTC-AGCCTT-AGTGAACATCGTCTATTAG-TGACCTTT-CAG---------TGA------CATTT-------------A-AT------T-C---------CCTTTCCGTTGACCACATTCAGTCACCTTTTTCAGC-GA-CC--------------------AT-------CCAGTC-AT
gi|2 : AGTGAACATCGTCTATTAGTGACCTTTCAG-TGACATTTAATTC-CC-TTTCCGTTGACCA--CAT----T-CA---GT---------------CACCTT-TTTCAGCGA----CC-ATC---------C----AGTCATT-TT-----CAAGCGAACCATTCAG-------TCACATTCAGATGACCTTT-CAG---------GCAC-----CATTT----T--------A-GT-------------G-A--CTTTTCA--TGAC--C--TTAGTTA--CATTTCAGTGAC-CC--------------------ATTCCATCACAATTC-AGTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCTTTCAGGCACCATTTTAG-TGACTTTTCATGACCT-TA---GT---------------TAC--A-TTTCAGTGA----CCCATT---------C----CATCACA-AT-----TCAGTG-ACTTTTCAA------TTGCATTTATG-TGACCTTTTCAG---------T--------CA----------------A-GT------T-CAG--T-AAGCCATT--G-TAAC---ATTC-GTCA--TATTTTAAT-GC-CC--------------------CT-------CAAGTCTATACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : AC--AATTC-GTCA--TATTTCAAT-AC-CT--------------------AA-------CAAGTC-ATACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : AT----TACA---TT---------------GAC--C-TCTCAGTGA----TC-ATT---------C----AGTCCTC-TT-----TCAGTG-ACCAT
gi|3 : a--CCATTCAG-TAAC---ATTCTGTCA--TATTTCAGT-AC-TC--------------------AT-------CAAGTC-ATACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATT-C-TTCAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : ttagtagT------T-CAG--T-AG-CCATTC-G-TTAA--CATTCTGTCA--TATTTCAAT-AC-CC--------------------AA-------CAATTC-ATACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTA------ATTGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGT-AA-TCTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcATTT--A-T-A-----GAAGT------TACAG--GGA--CCATTCAG-GGAC--CTTTAAGTCA--AGTTTCAGT-AG-CCATTCAGTAACATTCTATCATAT-------TAAGTC-ACACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : t-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagacaT------T-CAGTAG-C--CCATT-AG-TAAC----TTCTGTCA--CATTTTAGT-AAACC--------------------A--------CAAGTC-ATACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 2222 1111 3333333333333333 1111 1111111 11111 6666666666666666666666666666666666666666666666666 111111111111 111 1111111 4444444444444444444444444 33333333333 111111 111 1 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 444444444444444444444444444444444 11111111 11111 3333333 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 22 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 1 1 22222222 111 11
lowQualScore : 888888 6 66 5 1 5 0000 0000 5 888 2222222222222222 2222 8888888 2 0 3 555 3 1 22 00000 444 4 4 4 7 3333333333333333333333333333333333333333333333333 1 777777777777 333 7 44 3 3 3 0000000 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 0 5 9999 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 555 11 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 3 4 99999999 3 777 88 1 1
lowQualScore : ...... . .. . . . .... .... . ... ................ .... ....... . . . ... . . .. ..... ... . . . . ................................................. . ............ ... . .. . . . ....... . . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . . .... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . ... .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . . . ........ . ... .. . .
lowQualScore : 333333 7 77 7 0 7 0000 6666 0 888 2222222222222222 9999 6666666 3 5 6 888 3 0 00 00000 777 0 0 0 5 4444444444444444444444444444444444444444444444444 5 111111111111 555 0 66 3 3 3 8888888 3 3 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 0 4444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 000 00 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 3 0 77777777 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCNG-TGAC----CAT----T-CA---GTN---------------AC--A-TTTCAGTGA----TC-ATTCGGTCACC-TTTCA---GTG-ACCNTTCAGTCACCTT-----TCAG-TNA-CCTTT-CAG-TGACCA---TTTA-TA--AG------T------T-CA-----------GT-AG-CCATTCAG------------TGAC--CATTCNGTCA--TATTTCAGT-AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGT-AAT-CTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCNG-TGAC----CAT----T-CA---GTN---------------AC--N-TTTCAGTGA----CC-ATTCAGTCACC-TTTCA---GTG-ACCNTTCAGTTNCCTT-----TCAG-TNA-CCTTT-CAG-TGACCA---TTTA-TA--AG------T------T-CA-----------GN-A--CCATTCAG------------TGAC--CATTCNGTCA--TATTTCAGT-AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGT-AATNCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCTTTCAGTCACA-TTTTTG-TAAC----CTT----T-CA---ATC---------------AC--A-TTTCAGTAA----TC-ATTGAGTCACA-TTTCA---GTG-ACCTTTCAGTCCGCTT-----TCAG-TCA-AGTTT-CAG-TGACTA---TGTA-TAGAAG------T------TACG-----------GGGA--CCTTTCAG------------TGAT--CTTTAAGTGA--AGTTTCAGT-AG-C-CAT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGT-ATTATTG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : C-ATTCGATCCTT-TTTCA---CTG-ATCATTCAGTTACCTT-----TTAG-TCT-AGTTT-CAG-TGACC-----TT--TA--AG------TCATGTTT-TA-----------GT-AG-CCATTCAG------------TAAC---ATTCTGCCA--TATTTCAGT-GC-C-CAT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTA------ATTGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : --CATTTTGTCA--TATTTCAGT-AC-C-CAT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTAAATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACATTTCAGTGAAC-T--AAA-AGGT----CAC----T-GAAAGGTA---------------AC--AGTTTTACTGAATGGTC-ATTGGATGATC-ACTGAAAGGT--ACTTTTCAGTCACCTT-----TCAG-TTA-CCATT-CCG-TTACCA---TTC------AG------T------T-CAACGAATGGCGTGT-A--CATTTCAG------------TGAA--AATTCAGTTA--CCTATCAGT-GA-C-CAT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccAGT-ACC-TTTCAG-TGAT----CAT----C-CA---ATG---------------AC--C-ATTCAGTAA-----A-ACT--GTTACC-TTTCA---GTG-ACCTTTTAGTTCACTgtgaccat
gi|15 : aagatgaaaccttacctttcagtgacatttcACTTTTCAG-TCACCTTTCAGTTACC-ATTCCG-TTAC----CAT----T-CA---GTTCAACGAATGGCGTGTAC--A-TTTCAGTGA----AA-ATTCAGTTACC-TATCA---GTG-ACCATTCAGTACTCTT-----TCAG-TGA-CCtttcagtcacctttcagttaccattccgttaccattcagttcaacgaatggcgtgtacatttcagtgaaaattcagttacctatcagtgaccattcagtactctttcagtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAATat
gi|17 : CACCTTTCAG-TGACCTTTCAGTGGNN-NNNNNN-NNNN----NNN----N-NN---NNN---------------NN--N-NNNNNNNNN----NN-NNNNNNNNNNN-NNNNN---NNN-ACCTTTCAGTCACCTT-----TCAG-TCA-CCATT-CCG-TTACCA---TTC------AG------T------T-CA-----------g
gi|18 : acaggatgaaatcgTTCA---GTG-ACCATTCAGTTTACTctgaatggcatgt
gi|18 : caggaatgaaatcgcacctttc-CAG-T-ACCA---TGTACTA--AGA-----C------T-GA-----------G--------TTCAG------------TGAC--CATTCAGTctcagtcttagtacatggtactgtacttggtagtcatcgtttcagttaccgttccgatatcattcggttccggatgacatgtatatttcgtaccattcagt
gi|18 : caggaatgaaatcgcacctttcagtaaAGTCATCGTTTCA---GTT-ACCGTTCCGATATCAT-----TCGG-------TTC-CGGATGA-CA---TGTA-TA----------T------T-TC-----------GT-A--CCATTCAG------------Ttacttggtagtcatcgtttcagttaccgttccgatatcattcggttccggatgacatgtatatttcgtaccattcagt
gi|2 : caggaatgaaatcgcacctttcagtaaactgaatggtcactgaactcagtcttagtacatggtactgtacttggtAGTGAAC-TTTCA---GTT-CCCTTTCAGTGACCATATGAATCAG-TCAGCCTT---AG-TGAACATCGTCTA-TT--AGTGACCTT------T-CA-----------GT-G--ACATTTAATTCCCTTTCCGTTGACCACATTCAGTCACCTTTTTCAGC-GA-C-CAT-------CCAGTC-A-T
gi|2 : AGTGAACATCGTCTATTAGTGACCTTTCAG-TGACATTTAATTC-CC-TTTCCGTTGACCA--CAT----T-CA---GTC---------------ACCTT-TTTCAGCGA----CC-ATCCAGTCATT-TTCAA---GCGAACCATTCAGTCACA-T-----TCAGATGA-CCTTT-CAG-GCACCA---TTT--T---AG------T----------------------G-A--CTTTTCA-------------TGAC--C--TTAGTTA--CATTTCAGTGAC-C-CATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCTTTCAGGCACCATTTTAG-TGACTTTTCATGACCT-TA---GTT---------------AC--A-TTTCAGTGA----CCCATTCCATCACA-ATTCA---GTG-ACTTTTCAATTGCATT-----TATG-TGA-CCTTTTCAG-T-------------CA--AG------T------T-CA-----------GT-AAGCCATT--G------------TAAC---ATTC-GTCA--TATTTTAAT-GC-C-CCT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : AC--AATTC-GTCA--TATTTCAAT-AC-C-TAA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : AT----TACA---TTG---------------AC--C-TCTCAGTGA----TC-ATTCAGTCCTC-TTTCA---GTG-ACCAT
gi|3 : a------T-TA-----------GT-AG-CCATTCAG------------TAAC---ATTCTGTCA--TATTTCAGT-AC-T-CAT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTC--A---TTATCCC-AGCATTCAATT-CTT-CAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : ------T------T-CA-----------GT-AG-CCATTC-G------------TTAA--CATTCTGTCA--TATTTCAAT-AC-C-CAA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTA------ATTGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGT-AAT-CTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcTT-----ACAG-GGA-CCATT-CAG-GGACC-----TT--TA--AG------T------C-AA-----------GT-------TTCAG------------TAGC--CATTCAGTAA--CATTC---T-AT-CATAT-------TAAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTA------ATTGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : tatttatagaag-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagaca------T------T-CA-----------GT-AGCCCATT-AG------------TAAC----TTCTGTCA--CATTTTAGT-AAAC-CA--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTA------ATTGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 111 4444444444444444444444444444444444444444444444444 11 11111111111 22222222222 11111 999999999999999999999999999999999999999999999 11 11 11111111 4444444444444444444444444 33333333333 111111 111 111111 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 444444444444444444444444444444444 11111111 11111 3333333 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 22 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 44444444444444444 111 11
lowQualScore : 888888 5 000 0 1111111111111111111111111111111111111111111111111 11 0 99999999999 777 1 777 33333333333 3 1 6 3 0 3 2 00000 4 4 444444444444444444444444444444444444444444444 3 333 77 11 7 00 3 3 00000000 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 5 111111 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 555 11 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 11111111111111111 3 777 88 1 1
lowQualScore : ...... . ... . ................................................. .. . ........... ... . ... ........... . . . . . . . ..... . . ............................................. . ... .. .. . .. . . ........ . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . ...... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . ... .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . ................. . ... .. . .
lowQualScore : 333333 7 000 1 3333333333333333333333333333333333333333333333333 99 8 55555555555 888 1 888 66666666666 6 0 4 6 2 6 3 00000 0 0 999999999999999999999999999999999999999999999 1 666 11 11 0 44 1 1 66666666 6 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 444444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 000 00 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 00000000000000000 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCT---TTCAGTCACC-TTTCCG-TGAC----CAT----T-CA---GTC---------------ACA--TTTCAGTGA----T----C-ATT---CGGT---CACC----------TTTCAGTG-ACCNTTCAGTTAC-CTTTCAG-TNACCTT-----T-CAG-T---------GAC-----CATTT---T--A--A-----GT------T-CAGT-A-GCC-ATTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-ATACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCT---TTCAGTCACC-TTTCNG-TGAC----CAT----T-CA---GTN---------------ACA--TTTCAGTGA----T----C-ATT---CGGT---CACC----------TTTCAGTG-ACCNTTCAGTCAC-CTTTCAG-TNACCTT-----T-CAG-T---------GAC-----CATTT--AT--A--A-----GT------T-CAGT-A-GCC-ATTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-ATACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCT---TTCAGTCACA-TTTTTG-TAAC----CTT----T-CA---ATC---------------ACA--TTTCAGTAA----T----C-ATT---GAGT---CACA----------TTTCAGTG-ACCTTTCAGTCCG-CTTTCAG-TCAAGTT-----T-CAG-T---------GAC-----TATGT--AT--AGAA-----GT------TACGGG-G-ACC-TTTCAGTGATCTTTAAGTGAAGTTTCAGT--AG-C-CAT-------CAAGTC-ATACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGTATTA--T-TG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : ----C-ATT---CGAT---CCTT----------TTTCACTG-ATCATTCAGTTAC-CTTTTAG-TCTAGTT-----T-CAG-T---------GAC-----C--TT---T--A--A-----GTCATGTTT-TAGT-A-GCC-ATTCAGTAAC-ATTCTGCCATATTTCAGT--GC-C-CAT-------CAAGTC-ATACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTAAT------TGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : CATTTTGTCATATTTCAGT--AC-C-CAT-------CAAGTC-ATACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTA--AATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACAT---TTCAGTGAAC-T--AAA-AGGT----CAC----T-GAAAGGTA---------------ACAG-TTTTACTGAATGGT----C-ATTGGATGAT---CACTGAAAGGTACTTTTCAGTC-ACCTTTCAGTTAC-CATTCCG-TTACCAT-----T-CAG-TTCAACGAATGGCGTGTACATTTCAGTGAA--A-----AT------T-CAGT-T-ACC-TATCAGTGACCATTCAGTACTCTTTCAGT--GA-C-CAT-------
gi|15 : aagatgaaaccACTTTTCAG-TCACCT---TTCAGTTACC-ATTCCG-TTAC----CAT----T-CA---GTTCAACGAATGGCGTGTACA--TTTCAGTGA----A----A-ATT---CAGT---TACC----------TATCAGTG-ACCATTCAGT-ACTCTTTCAG-TGACC
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAATat
gi|17 : CACCTTTCAG-TGACCT---TTCAGTGGNN-NNNNNN-NNNN----NNN----N-NN---NNN---------------NNN--NNNNNNNNN----N----N-NNN---NNNN---NNNN----------NNNNNNNN-ACCTTTCAGTCAC-CTTTCAG-TCACCAT-----T-CCG-T---------TAC-----CATTC---------A-----GT------T-CAg
gi|18 : acaggatgaaatcgCACCTTTCAG-TAAACTGAAT--GGTCAC---------TGA------AC----T-CA---GTC---------------TTA--GTACA-TGG----TACTGT-ACT---TGGTAGTCATCG---------TTTCAGTT-ACCGTTCCGATAT-CATTCGG------TT-----C-CGGAT---------GA------CATGT--AT--A---------T------T-TCGT-A--CC-ATTCAGTctgaatggcatgt
gi|2 : caggaatgaaatcgAGTGAA-CTTTCAG-TTCCCTT-----T-CAG-T---------GAC-----CA--T--AT--G--A-----A-------T-CAGTCA-GCC---TTAGTGAACAT--CGTC-TATT--AGTG-AC-C-TTT-------CA
gi|2 : AGTG-AACTTTCAGTTCC-CTTTCAG-TGACCATATGAAT-CAG-T---------CAG-----CCTTA--GT--G--AACATCGTCTA---T-TAGT-G-ACC-TTTCAGTGA-CATTTAATTCCCTTTCCGTTGAC-CACAT-------TCAGTC-AC---CTTTTgtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : AGTGAACATCGTCTATTAGTGACCTTTCAG-TGACAT---TTAATTC-CC-TTTCCGTTGACCA--CAT----T-CA---GTC---------------ACCTTTTTCAGCGA----C----C-ATC---CAGT---CATT----------TTCAAGCGAACCATTCAGTCAC-A-TTCAGATGACCTT-----T-CAG-G---------CAC-----CAT------------------T------T-TAGT-G-ACT-TTTCA-TGACC--TTAGTTACATTTCAGTG-AC-C-CATTCCATCACAATTC-AGTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCT---TTCAGGCACCATTTTAG-TGACTTTTCATGACCT-TA---GTT---------------ACA--TTTCAGTGA----C----CCATT---CCAT---CACA----------ATTCAGTG-ACTTTTCAATTGC-ATTTATG-TGACCTT-----TTCAG-T-------------------------C--A--A-----GT------T-CAGT-AAGCC-ATT--GTAAC-ATTC-GTCATATTTTAAT--GC-C-CCT-------CAAGTCTATACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : ACAATTC-GTCATATTTCAAT--AC-C-TAA-------CAAGTC-ATACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : AT----TACA---TTG---------------ACC--TCTCAGTGA----T----C-ATT---CAGT---CCTC----------TTTCAGTG-ACCAT
gi|3 : a------T-TAGT-A-GCC-ATTCAGTAAC-ATTCTGTCATATTTCAGT--AC-T-CAT-------CAAGTC-ATACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATT-C-TTCAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : T------T-CAGT-A-GCC-ATTC-GTTAACATTCTGTCATATTTCAAT--AC-C-CAA-------CAATTC-ATACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTAAT------TGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGTA--A--TCTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gc----------TTACAGGG-ACCATTCAGGGAC-CTTTAAG-TCAAGTT-----T-CA----------------------------------------------------GT-A-GCC-ATTCAGTAA-CATTCTATCATATT-----------------------AAGTC-ACACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : tatttatagaag-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagacaT------T-CAGT-A-GCCCATT-AGTAAC--TTCTGTCACATTTTAGT--AAAC-CA--------CAAGTC-ATACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 111 33333333333333333333333333 111 2222222 11111111 555555555555555555555555555 11 11 11111111 4444444444444444444444444 33333333333 111111 111 111111 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 444444444444444444444444444444444 11111111 11111 3333333 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 22 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 44444444444444444 111 11
lowQualScore : 888888 5 000 0 00000000000000000000000000 000 4 66 66 2 0000000 88888 44444444 4 1 55 0 99999 44444 3 3 5 1 000000000000000000000000000 2 6666 3 3 77777 666 44 7 00 3 3 00000000 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 5 111111 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 555 11 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 11111111111111111 3 777 88 1 1
lowQualScore : ...... . ... . .......................... ... . .. .. . ....... ..... ........ . . .. . ..... ..... . . . . ........................... . .... . . ..... ... .. . .. . . ........ . . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . ...... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . ... .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . ................. . ... .. . .
lowQualScore : 333333 7 000 1 00000000000000000000000000 000 6 22 99 8 7777777 77777 22222222 0 0 55 3 11111 99999 6 6 9 4 999999999999999999999999999 9 1111 1 1 77777 999 88 0 44 1 1 66666666 3 3 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 444444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 000 00 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 00000000000000000 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCT---TTCAGTCACC-TTTCCGT-GAC----CA--T----TCA---GTCACA-TTT--CAGTGAT----C-ATT-CG-GT---CACN-TTTCAGTGA-CCNTTCA--GTTACCTT-----TCAG-TCA-CCTTT-CAG-TGACCAT--T---T-TA------AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCT---TTCAGTCACC-TTTCCGT-GAC----CA--T----TCA---GTCACA-TTT--CAGTGAT----C-ATT-CG-GT---CACC-TTTCAGTGA-CCNTTCA--GTTACCTT-----TCAG-TNA-CCTTT-CAG-TGACCAT--T---T-TA------AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCT---TTCAGTCACA-TTTTTGT-AAC----CT--T----TCA---ATCACA-TTT--CAGTAAT----C-ATT-GA-GT---CACA-TTTCAGTGA-CCTTTCA--GTCCGCTT-----TCAG-TCA-AGTTT-CAG-TGACTAT--G---TATAGA----AGT------TAC----GGG-G-AC-----C-T-TTCAGTGATCTTTAAGTGAAGTTTCAGT--AG-C-CAT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGTATTA--T-TG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : ----C-ATT-CG-AT---CCTT-TTTCACTGA-TCATTCA--GTTACCTT-----TTAG-TCT-AGTTT-CAG-TGACC----T---T-TA------AGTCATGTTT-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGCCATATTTCAGT--GC-C-CAT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTAAT------TGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : CATTTTGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTA--AATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACAT---TTCAGTGAAC-T--AAAA-GGT----CA--C----TGAAAGGTAACAGTTT--TACTGA-------AT---G-GT---CA----TTGGATGA-TCACTGAAAGGTACTTT-----TCAG-TCA-CCTTT-CAG-TTACCAT--TCCGT-TACCATTCAGT------T-CAACGAAT-G-GCGTGTAC-ATTTCAGTGAAAATTCAGTTACCTATCAGT--GA-C-CAT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccACTTTTCAG-TCACCT---TTCAGTTACC-ATTCCGT-TAC----CA--T----TCA---GT-------T--CAACGA-------ATGGCGTGT----ACA-TTTCAGTGA-AAATTCA--GTTACCTA-----TCAG-TGA-CCATT-CAG-T----AC--T---C-T---------T------T-C----AGT-G-AC-----C-A-Tgtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAAT
gi|17 : CACCTTTCAG-TGACCT---TTCAGTGGNN-NNNNNNN-NNN----NN--N----NNN---NNNNNN-NNN--NNNNNNN----N-NNN-NN-NN---NNNN-NNNNNNNNA-CCTTTCA--GTCACCTT-----TCAG-TCA-CCATT-CCG-TTACCAT--T---C---------AGT------T-C----Ag
gi|18 : acaggatgaaatcgCACCTTTCAG-TAAACTGAAT--GGTCAC--------T-GA------A--C----TCA---GTCTTA-GTA--CA-TGGTACTGT-ACT-TG-GTAGTCATCGTTTCAGTTA-CCGTTCC--GATATCAT-----TCGG-------TTC-CGGATGA-CAT--G---T-AT------ATT------T-C-----GT-A--C-----C-A-TTCAGTctgaatggcatgt
gi|2 : caggaatgaaatcgA--GTGAACTT-----TCAG-TTC-CCTTT-CAG-TGACCAT--A---T-GA------A--------T-C----AGTCA-GC-----C----TTAGTGAACAT--CGTC-TATT--AGTG-AC-C-TTT-------CA
gi|2 : C-TTTCAGTTC-CCTTTCA--GTGACCATATGAATCAG-TCAGCCTT---AG-TGAACATCGT---C-TA---------------T-T----AGT-G-AC-----C-T-TTCAGTGA-CATTTAATTCCCTTTCCGTTGAC-CACAT-------TCAGTC-A-C---CTTTTgtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaaAGTGAACATCGTCTATTAGTGACCTTTCAG-TGACAT---TTAATTC-CC-TTTCCGTTGAC----CACAT----TCA---GTCACC-TTTTTCAGCGAC----C-ATC-CA-GT---CATT-TTCAAGCGAACCATTCA--GTCACATT------CAGATGA-CCTTT-CAG-GCACCAT--T---T-T-----------------------AGT-G-AC-----T-T-TTCA-TGACC--TTAGTTACATTTCAGTG-AC-C-CATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCT---TTCAGGCACCATTTTAGT-GACTTTTCA--TGACCTTA---GTTACA-TTT--CAGTGAC----CCATT-CC-AT---CACA-ATTCAGTGA-CTTTTCA--ATTGCATT-----TATG-TGA-CCTTTTCAG-T--------------CA------AGT------T-C----AGT-AAGC-----C-A-TT--GTAAC-ATTC-GTCATATTTTAAT--GC-C-CCT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : ACAATTC-GTCATATTTCAAT--AC-C-TAA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : ACC-TCT--CAGTGAT----C-ATT-CA-GT---CCTC-TTTCAGTGA-CCAT
gi|3 : aattacattg------T-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGTCATATTTCAGT--AC-T-CAT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATT-C-TTCAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : T------T-C----AGT-A-GC-----C-A-TTC-GTTAACATTCTGTCATATTTCAAT--AC-C-CAA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTAAT------TGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGTA--A--TCTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcTT-----ACAG-GGA-CCATT-CAG-GGACC----T---T-TA------AGTCAAGTTT-C----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTATCATATT-----------------------AAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : tatttatagaag-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagacaT------T-C----AGT-A-GC-----CCA-TT-AGTAAC--TTCTGTCACATTTTAGT--AAAC-CA--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 111 444444444444444444444444444444444444444444444444 11 22222222222 111111 333333333333333333 11 11 11111111 4444444444444444444444444 33333333333 111111 111 111111 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 444444444444444444444444444444444 11111111 11111 3333333 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 22 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 44444444444444444 111 11
lowQualScore : 888888 5 000 0 444444444444444444444444444444444444444444444444 33 2 44444444444 0 99999999 4 111111 1 7 9999999 77777 3 3 0 1 888888888888888888 3 6666 3 3 88888 888 44 7 00 3 3 00000000 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 5 111111 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 555 11 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 11111111111111111 3 777 88 1 1
lowQualScore : ...... . ... . ................................................ .. . ........... . ........ . ...... . . ....... ..... . . . . .................. . .... . . ..... ... .. . .. . . ........ . . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . ...... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . ... .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . ................. . ... .. . .
lowQualScore : 333333 7 000 1 000000000000000000000000000000000000000000000000 66 3 77777777777 5 99999999 0 555555 0 5 3333333 88888 3 3 4 2 999999999999999999 1 5555 3 3 33333 222 88 0 44 1 1 66666666 3 3 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 444444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 000 00 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 00000000000000000 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCT---TTCAGTCACC-TTTCCG-TGAC----CAT----TCA---GTC---------------ACA--TTTCAGTGA----T----C-ATTCGGT---CA-CNTTTCAGTG-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCTTT-CAG-TGACCAT--TT-TA--AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCT---TTCAGTCACC-TTTCCG-TGAC----CAT----TCA---GTC---------------ACA--TTTCAGTGA----T----C-ATTCGGT---CA-CNTTTCAGTG-A------CCNTTCAGTTACCTT-----TCAG-TCA-CCTTT-CAG-TGACCAT--TT-TA--AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCT---TTCAGTCACA-TTTTTG-TAAC----CTT----TCA---ATC---------------ACA--TTTCAGTAA----T----C-ATTGAGT---CA-CATTTCAGTG-A------CCTTTCAGTCCGCTT-----TCAG-TCA-AGTTT-CAG-TGACTAT--GTATAGAAGT------TAC----GGG-G-AC-----C-T-TTCAGTGATCTTTAAGTGAAGTTTCAGT--AG-C-CAT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGTATTA--T-TG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : ----C-ATTCGAT---CC-TTTTTCACTG-A------TCATTCAGTTACCTT-----TTAG-TCT-AGTTT-CAG-TGACC----TT-TA--AGTCATGTTT-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGCCATATTTCAGT--GC-C-CAT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTAAT------TGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : CATTTTGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTA--AATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACAT---TTCAGTGAAC-T--AAA-AGGT----CAC----TGAAAGGTA---------------ACAG-TTTTACTGAATGGT----C-ATTGGAT---GA-----TCACTG-AAAGGTACTTTTCAGTCACCTT-----TCAG-TTA-CCATT-CCG-TTACCAT--TC-----AGT------T-CAACGAAT-G-GCGTGTAC-ATTTCAGTGAAAATTCAGTTACCTATCAGT--GA-C-CAT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccACTTTTCAG-TCACCT---TTCAGTTACC-ATTCCG-TTAC----CAT----TCA---GTTCAACGAATGGCGTGTACA--TTTCAGTGA----A----A-ATTCAGT---TA-CCTATCAGTG-A------CCATTCAGT-ACT-----------------CTTT-CAG-TGACCAT--gtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAAT
gi|17 : CACCTTTCAG-TGACCT---TTCAGTGGNN-NNNNNN-NNNN----NNN----NNN---NNN---------------NNN--NNNNNNNNN----N----N-NNNNNNN---NN-NNNNNNNNNN-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCATT-CCG-TTACCAT--TC-----AGT------T-C----Ag
gi|18 : acaggatgaaatcgCACCTTTCAG-TAAACTGAAT--GGTCAC---------TGA------AC----TCA---GTC---------------TTA--GTACA-TGG----TACTGT-ACTTGGTAGTCATCGTTTCAGTT-A------CCGTTCCGATATCAT-----TCGG-------TTC-CGGATGA-CAT--GT-AT--ATT------T-C-----GT-A--C-----C-A-TTCAGTctgaatggcatgt
gi|2 : caggaatgaaatcgAGTGAACTT-----TCAG-TTC-CCTTT-CAG-TGACCAT--AT-GA--A--------T-C----AGTCA-GC-----C----TTAGTGAACAT--CGTC-TATT--AGTG-AC-C-TTT-------CA
gi|2 : TTTCAGTT-C------CCTTTCAGTGACCATATGAATCAG-TCAGCCTT---AG-TGAACATCGTC-TA-----------T-T----AGT-G-AC-----C-T-TTCAGTGA-CATTTAATTCCCTTTCCGTTGAC-CACAT-------TCAGTC-A-C---CTTTTgtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaacAGTGAACATCGTCTATTAGTGACCTTTCAG-TGACAT---TTAATTC-CC-TTTCCGTTGACCA--CAT----TCA---GTC---------------ACCTTTTTCAGCGA----C----C-ATCCAGT---CA-TTTTCAAGCGAA------CCATTCAGTCACA-T-----TCAGATGA-CCTTT-CAG-GCACCAT--TT-T-------------------AGT-G-AC-----T-T-TTCA-TGACC--TTAGTTACATTTCAGTG-AC-C-CATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCT---TTCAGGCACCATTTTAG-TGACTTTTCATGACCTTA---GTT---------------ACA--TTTCAGTGA----C----CCATTCCAT---CA-CAATTCAGTG-A------CTTTTCAATTGCATT-----TATG-TGA-CCTTTTCAG-T-----------CA--AGT------T-C----AGT-AAGC-----C-A-TT--GTAAC-ATTC-GTCATATTTTAAT--GC-C-CCT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : ACAATTC-GTCATATTTCAAT--AC-C-TAA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : TTACATTG-A------CCTCTCAGTGATCAT-----TCAG-TCC-TCTTT-CAG-TGACCAT--
gi|3 : aa------T-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGTCATATTTCAGT--AC-T-CAT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATT-C-TTCAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : T------T-C----AGT-A-GC-----C-A-TTC-GTTAACATTCTGTCATATTTCAAT--AC-C-CAA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTAAT------TGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGTA--A--TCTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcA-CCATT-CAG-GGACC----TT-TA--AGTCAAGTTT-C----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTATCATATT-----------------------AAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : tatttatagaagttacaggg-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagacaT------T-C----AGT-A-GC-----CCA-TT-AGTAAC--TTCTGTCACATTTTAGT--AAAC-CA--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 2222 1111 111 111 2222222 111111 11111 44444444444444444444 111 11 11 11111111 4444444444444444444444444 33333333333 111111 111 1 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 444444444444444444444444444444444 11111111 11111 3333333 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 22 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 44444444444444444 111 11
lowQualScore : 888888 6 22 6 0 44 6 3333 4444 111 7 666 0000000 9999 2 66 4 222222 3 1 3 00000 4 3 3 1 77777777777777777777 3 6666 3 3 88888 000 22 7 00 3 3 00000000 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 0 5 9999 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 555 11 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 11111111111111111 3 777 88 1 1
lowQualScore : ...... . .. . . .. . .... .... ... . ... ....... .... . .. . ...... . . . ..... . . . . .................... . .... . . ..... ... .. . .. . . ........ . . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . . .... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . ... .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . ................. . ... .. . .
lowQualScore : 333333 7 77 7 8 22 7 3333 2222 777 0 555 9999999 9999 3 33 4 888888 2 6 5 00000 0 6 6 4 88888888888888888888 1 5555 3 3 33333 444 33 0 44 1 1 66666666 3 3 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 0 4444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 000 00 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 00000000000000000 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCCG-TGAC----CAT----TCA---GTCACA--TTTCAGCGA----CC-ATT-CG-GTCACATTTCAGTG-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCTTT-CAGTGACCAT--TT-TA--AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCCG-TGAC----CAT----TCA---GTCACA--TTTCAGTGA----TC-ATT-CG-GTCACNTTTCAGTG-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCTTT-CAGTGACCAT--TT-TA--AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCTTTCAGTCACA-TTTTTG-TAAC----CTT----TCA---ATCACA--TTTCAGTAA----TC-ATT-GA-GTCACATTTCAGTG-A------CCTTTCAGTCCGCTT-----TCAG-TCA-AGTTT-CAGTGACTAT--GTATAGAAGT------TAC----GGG-G-AC-----C-T-TTCAGTGATCTTTAAGTGAAGTTTCAGT--AG-C-CAT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGTATTA--T-TG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : C-ATT-CG-ATCCTTTTTCACTG-A------TCATTCAGTTACCTT-----TTAG-TCT-AGTTT-CAGTGACC----TT-TA--AGTCATGTTT-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGCCATATTTCAGT--GC-C-CAT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTAAT------TGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : CATTTTGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTA--AATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACATTTCAGTGAAC-T--AAA-AGGT----CAC----TGAAAGGTAACAG-TTTTACTGAATGGTC-ATT-GG-ATGA----TCACTG-AAAGGTACTTTTCAGTCACCTT-----TCAG-TTA-CCATT-CCGTTACCAT--TC-----AGT------T-CAACGAAT-G-GCGTGTAC-ATTTCAGTGAAAATTCAGTTACCTATCAGT--GA-C-CAT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccACTTTTCAG-TCACCTTTCAGTTACC-ATTCCG-TTAC----CAT----TCA---GT--------TCAACGA-------ATGGCGTGT-ACATTTCAGTG-A------------AA--A---T-----TCAG-TTA-CCTAT-CAGTGACCA------------T------T-C----AGT-A-CT-----C-T-TTCAGTGACCATgtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAAT
gi|17 : CACCTTTCAG-TGACCTTTCAGTGGNN-NNNNNN-NNNN----NNN----NNN---NNNNNN--NNNNNNNNN----NN-NNN-NN-NNNNNNNNNNNNNN-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCATT-CCGTTACCAT--TC-----AGT------T-C----Ag
gi|2 : acaggatgaaatcgAGTGAACTT-----TCAG-TTC-CCTTT-CAGTGACCAT--AT-GA--A--------T-C----AGTCA-GC-----C----TTAGTGAACAT--CGTC-TATT--AGTG-AC-C-TTT-------CActgaatggcatgt
gi|2 : TTTCAGTT-C------CCTTTCAGTGACCATATGAATCAG-TCAGCCTT---AGTGAACATCGTC-TA-----------T-T----AGT-G-AC-----C-T-TTCAGTGA-CATTTAATTCCCTTTCCGTTGAC-CACAT-------TCAGTC-A-C---CTTTTgtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaacAGTGAACATCGTCTATTAGTGACCTTTCAG-TGACATTTAATTC-CC-TTTCCGTTGACCA--CAT----TCA---GTCACCTTTTTCAGCGA----CC-ATC-CA-GTCATTTTCAAGCGAA------CCATTCAGTCACA-T-----TCAGATGA-CCTTT-CAGGCACCAT--TT-T-------------------AGT-G-AC-----T-T-TTCA-TGACC--TTAGTTACATTTCAGTG-AC-C-CATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCTTTCAGGCACCATTTTAG-TGACTTTTCATGACCTTA---GTTACA--TTTCAGTGA----CCCATT-CC-ATCACAATTCAGTG-A------CTTTTCAATTGCATT-----TATG-TGA-CCTTTTCAGT-----------CA--AGT------T-C----AGT-AAGC-----C-A-TT--GTAAC-ATTC-GTCATATTTTAAT--GC-C-CCT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : ACAATTC-GTCATATTTCAAT--AC-C-TAA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : TTACATTG-A------CCTCTCAGTGATCAT-----TCAG-TCC-TCTTT-CAGTGACCAT--
gi|3 : aa------T-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGTCATATTTCAGT--AC-T-CAT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTC--A---TTATCCC-AGCATTCAATT-CTT-CAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : T------T-C----AGT-A-GC-----C-A-TTC-GTTAACATTCTGTCATATTTCAAT--AC-C-CAA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTAAT------TGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGTA--A--TCTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcA-CCATT-CAGGGACC----TT-TA--AGTCAAGTTT-C----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTATCATATT-----------------------AAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : tatttatagaagttacaggg-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagacaT------T-C----AGT-A-GC-----CCA-TT-AGTAAC--TTCTGTCACATTTTAGT--AAAC-CA--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGGAATGAAATCGCACCTTTCAGTAAACTGAATGGTCACTGAACTCAGTCTTAGTACATGGTACTGTACTTGGTAGTCATCGTTTCAGTTACCGTTCCGATATCATTCGGTTCCGGATGACATGTATATTTCGTACCATTCAGT
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 2222222222222222222222222 111 11111 111111 111111 55555555555555555555555555 111 11 11 11111111 4444444444444444444444444 33333333333 111111 111 111111 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 444444444444444444444444444444444 11111111 11111 3333333 333333 1 11 1 222222222 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 22 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 44444444444444444 111 11
lowQualScore : 888888 6 22 6 0 44 6 4444444444444444444444444 555 44444 77 111111 4 4 111111 1 4 0 2 99999 3 3 3 3 55555555555555555555555555 3 3 88888 000 22 7 00 3 3 00000000 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 777 5 5 44 0 22222222222 5 5 3 0 5 444444 0 5 777 5 5 5 111111 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 999999999999999999999999999999999 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 3 6 99 1 444444444 7 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 555 11 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 11111111111111111 3 777 88 1 1
lowQualScore : ...... . .. . . .. . ......................... ... ..... .. ...... . . ...... . . . . ..... . . . . .......................... . . ..... ... .. . .. . . ........ . . . . ......................... ... . . . . .. . .. . . ... . . .. . ........... . . . . . ...... . . ... . . . ...... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. ................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. . . .. . ......... . .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . ... .. . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . ................. . ... .. . .
lowQualScore : 333333 7 77 7 8 22 7 5555555555555555555555555 666 99999 99 555555 0 0 555555 2 3 5 4 11111 6 6 6 6 22222222222222222222222222 3 3 33333 444 55 0 44 1 1 66666666 3 3 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 111 0 0 66 4 55555555555 0 0 9 8 0 444444 9 0 555 0 0 0 444444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 444444444444444444444444444444444 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 3 7 22 7 666666666 3 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 000 00 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 00000000000000000 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCCG-TGAC----CAT----TCA---GTCACA--TTTCAGCGACC-AT-TCG-GTCACATT------TC-AGTG-A------CCTTTCAGTNACCTT-----TCAG-TCA-CCTTT-CAGTGACCAT--TC-TA--AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCCG-TGAC----CAT----TCA---GTCACA--TTTCAGCGACC-AT-TCG-GTCACATT------TC-AGTG-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCTTT-CAGTGACCAT--TT-TA--AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCTTTCAGTCACA-TTTTTG-TAAC----CTT----TCA---ATCACA--TTTCAGTAATC-AT-TGA-GTCACATT------TC-AGTG-A------CCTTTCAGTCCGCTT-----TCAG-TCA-AGTTT-CAGTGACTAT--GTATAGAAGT------TAC----GGG-G-AC-----C-T-TTCAGTGATCTTTAAGTGAAGTTTCAGT--AG-C-CAT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCGC-G-AA-TTG-TACTAAAGATAATTCAGTGACATAT-CAT-GCATTAGTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGAT-GCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATA-CCCA-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--ATTCAGTT----AATTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA-GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGTATTA--T-TG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGTCC-TGATTTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : C-AT-TCG-ATCCTTTT------TC-ACTG-A------TCATTCAGTTACCTT-----TTAG-TCT-AGTTT-CAGTGACC----TT-TA--AGTCATGTTT-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGCCATATTTCAGT--GC-C-CAT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTGC-G-AA-TTG-TACTAGTAGTGTTTCAACGACATAT-TAT-GTA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGAT-GTAAT------TGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : CATTTTGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT-TAT-GTA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTA--AATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACATTTCAGTGAAC-T--AAA-AGGT----CAC----TGAAAGGTAACAG-TTTTACTGA---AT---G-GTCA--TTGGATGATC-ACTG-AAAGGTACTTTTCAGTCACCTT-----TCAG-TTA-CCATT-CCGTTACCAT--TC-----AGT------T-CAACGAAT-G-GCGTGTAC-ATTTCAGTGAAAATTCAGTTACCTATCAGT--GA-C-CAT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccACTTTTCAG-TCACCTTTCAGTTACC-ATTCCG-TTAC----CAT----TCA---G--------TTCAACGA---ATGGCGTGT-ACATT------TC-AGTG-A------------AA--A---T-----TCAG-TTA-CCTAT-CAGTGACCA------------T------T-C----AGT-A-CT-----C-T-TTCAGTGACCATgtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAAT
gi|17 : CACCTTTCAG-TGACCTTTCAGTGGNN-NNNNNN-NNNN----NNN----NNN---NNNNNN--NNNNNNNNNNN-NN-NNN-NNNNNNNN------NN-NNNN-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCATT-CCGTTACCAT--TC-----AGT------T-C----Ag
gi|2 : acaggatgaaatcgAGTGAACTT-----TCAG-TTC-CCTTT-CAGTGACCAT--AT-GA--A--------T-C----AGTCA-GC-----C----TTAGTGAACAT--CGTC-TATT--AGTG-AC-C-TTT-------CActgaatggcatgt
gi|2 : TT------TC-AGTT-C------CCTTTCAGTGACCATATGAATCAG-TCAGCCTT---AGTGAACATCGTC-TA-----------T-T----AGT-G-AC-----C-T-TTCAGTGA-CATTTAATTCCCTTTCCGTTGAC-CACAT-------TCAGTC-A-C---CTTTTgtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaacAGTGAACATCGTCTATTAGTGACCTTTCAG-TGACATTTAATTC-CC-TTTCCGTTGACCA--CAT----TCA---GTCACCTTTTTCAGCGACC-AT-CCA-GTCAT-TT------TCAAGCGAA------CCATTCAGTCACA-T-----TCAGATGA-CCTTT-CAGGCACCAT--TT-T-------------------AGT-G-AC-----T-T-TTCA-TGACC--TTAGTTACATTTCAGTG-AC-C-CATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCGtcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCTTTCAGGCACCATTTTAG-TGACTTTTCATGACCTTA---GTTACA--TTTCAGTGACCCAT-TCC-ATCACAAT------TC-AGTG-A------CTTTTCAATTGCATT-----TATG-TGA-CCTTTTCAGT-----------CA--AGT------T-C----AGT-AAGC-----C-A-TT--GTAAC-ATTC-GTCATATTTTAAT--GC-C-CCT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCGC-G-AA-TTG-TACTAGTAGTAATTCAATGACATATTCAT-GTACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATA-TCCACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATT-ATTTCGCAAAATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGTCCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG-CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : ACAATTC-GTCATATTTCAAT--AC-C-TAA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCGata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : ATT------AC-ATTG-A------CCTCTCAGTGATCAT-----TCAG-TCC-TCTTT-CAGTGACCAT--
gi|3 : a------T-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGTCATATTTCAGT--AC-T-CAT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCGC-G-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATT-C-TTCAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTATTCCGTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : T------T-C----AGT-A-GC-----C-A-TTC-GTTAACATTCTGTCATATTTCAAT--AC-C-CAA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT---T-GTACTAGTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTAAT------TGTT-ATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--AATCAC-T----AA--GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--ATT-ACTCGTAAAAATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA-TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGTA--A--TCTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcTT------AC-AGGG-A------CCATTCAGGGACCTT-----TAAG-TCA-AGTTT-CA----------------------------------GT-A-GC-----C-A-TTCAGTAA-CATTCTATCATATT-----------------------AAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCGC-GAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGAT-GTAAT------TGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCCA-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : tatttatagaag-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A---AACT----A--TGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagacaT------T-C----AGT-A-GC-----CCA-TT-AGTAAC--TTCTGTCACATTTTAGT--AAAC-CA--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCGC-A-AAATTGGTACTAGTAGTAATTCATTGACATATGCATTATACTAGTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG-CCAA-GTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : TTCAAAT----AAGTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG-GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
blockSeqs : CGTCTA A GA A AA T TTTTCATGACCTTAGTTACA CCC GGCGT TT GGATGA A A AAGGTA A T T ATGAA A G T G TTTAAGTCATGTTTT C A GTGTA AT AA T TG A A TTCCATCA T G C T NNNNNNNNNNNNNNNNNNNNNNNNA AAG G C A CA G TA A A CA A G GT GCATTATACTA A A T T . C TCG T C A CCAA TTT A GG TTCG G G AATGGCGTATT TCTGT T T C C AC A T C TT T C A G AATCAAATAGCAAT T T AG A CT T TAA C A A G TAGTTGTTA AA C . T G A TGGCGAA A CAG AT GGAGCTC TA TCCACCTTAGCTCACTGTATAGACTA A T GAAAAAAT CTGTC C A C CG TATTTTT AG A T T AC C AA CACAAA A C TC AA CG C A C AT T A TT T ATTTCGCA A TA AAGG A T C T TTTA A T A A TTTGA TGTTT GA G AC AC G A CAT TA GA G G AC T TA A A TGTT A C T A ATG CAAAGCAGCATACGATTTAACATGATATGATATTTTTTTTTACCAAATCAGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAGTACGAGACAGTAAGATTTTCGAAGGAACATAACC C TA T TATTG G TA A G ATT TA T AAC A CCC TT T AC A C CCACCCACATTCCCACT A AT AA T CA C GGT TCTACATG GT A C G A C A T C A A T A GTGAACCCCTATACCAACATTTTTACATCTAGTATATTTAACGTGTACACA . AATCCTGTATATT T T AT T G
blockSeqs : . . TA . CC . CACTGAAAGGTAACAG NN TCG CA . . . . T C T . . . . T TTCAGTTCAACG . . . CA CC T G . . T . . . A GT C . . . T . . . . GA . . AA TCATGTACTA . . C . . . ATA . . . CCAT . . G . . . TT . . . . . . . . . . . . . . . . . . . C T AT . C A G GATTTTTT . . . G . . TGGCGAA . . . G . TCCCAGTTAGCTACCT . . GAAAAA . C T C C TTAAT . A A A . A A AAA G . . . C . . T . G . . T ACTCGTAA A . . . . T . . A . . . . . AC . . G . . . . A . . . . . A . TGC A . T . AC AAGAGAGCATACGACATAAATGTTCATGTATAGTGATCTATGTCTAAATCGGGGGCGAACATCAAGATGATTATTAAAAAGTGCAAGTCCAAGACATTGTCTAAGGGAAACGTCG . T A . . A . . AAT CA A . . CCC TT C . . . CGCACCTACACCCCTG . . A . . . GT . . A . T . G . . C A G . A GAACACAATCCAACATTTCATCGACGTAT . ATCTGTATAA T T A T C
blockSeqs : . GG . NN . CACATTCAGTCACCTT CC NNN NN . . . . T C T . . . . G TCGTCTATT . . . A AC A G . . T . . . T . G . . . . . . . . G . . GT TGTACTA . . T . . . . . . . TCAT . . G . . . TA . . . . . . . . . . . . . . . . . . . A T A . C A G GATTTTA . . . T . . TG . . . G . CCTTGTTAGCTACCA . . AAAACA . C A A T . . A A A . T A T . . . . G . . A . . . . A CCGTT A . . . . C . . C . . . . . G . . A . . . . A . . . . . C . . A . T . GT GACAATACATTGTTAACTGTGATCATATGTCTAAATCACGGCGTATATCAAATAATTGTTAAAAAAGCTGCTAGGTTCAAGAAAAATGTCCAAGAGGAAACGCCCTG . . G . . . . . TT A A . . CC T C . . . . . . . . CAACACATTTTC T . T A
blockSeqs : . CA . CC . NNNNNNNNNNNN . CCA CA . . . . T G T . . . . T TTCAGTTC . . . T CC C . . . T . . . T . G . . . . . . . . G . . AC TATGTA . . C . . . . . . . CGC . . G . . . T . . . . . . . . . . . . . . . . . . . T T A . C T G GATTTTA . . . G . . T . . . G . CCCAGTTAGCTACCA . . . . T A A G . . A A A . T . . . . . . C . . T . . . . T CAAAT G . . . . C . . C . . . . . A . . A . . . . A . . . . . A . . A . T . AT ACGACATACATGTAACGTGATCTATGTACTAAATCAGGGCGTATATCAAGATGATTAAAAAATGCTAGGTCAAGAAATGTCCAAGGGGAAACGTCC . . T . . . . . AT . T . . . G .
blockSeqs : . C . TA . CATTCAG . TCC T . . . . A G A . . . . G TATGAATC . . . T CA A . . . T . . . T . G . . . . . . . . G . . GA TATGTA . . T . . . . . . . CGC . . A . . . A . . . . . . . . . . . . . . . . . . . T T A . G A G GATTTAA . . . T . . . . . . G . CCAAGTAAGTTATCA . . . . . . A G . . . . . . C . . . . . . . . . T CACT . . . . . C . . A . . . . . A . . A . . . . A . . . . . A . . T . G . A ACACAGTTTGCAATACCATATGAAAGTGTGAGTCAAGAATAATATCCAAAGTGAATGTGC . . T . . . . . A . . . .
blockSeqs : G . . . . . T C T . . . . G CAAGTTC . . . T AC A . . . T . . . T . G . . . . . . . . A . . AA . . . . . . . . . . . CAC . . C . . . T . . . . . . . . . . . . . . . . . . . T . A . C T . ATTTGT . . . G . . . . . . G . . . . . . . T C . . . . AACT . . . . . C . . A . . . . . A . . C . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . T T A . . . . C TTTT . . . A C T . . . T . . . A . . . . . . . . . . . . . . . . . . . . . . . . . CC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . G . . . . . A . . . . . . . . . . . C . . . . . A . . A . . . . . . .
blockSeqs : . . . . A G T . . . . G TTC . . . A C T . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . .
blockSeqs : . . . . . G . . . . . . . . . . A C T . . . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A C T . . . A . .
blockSeqs : . . . . C . . . . . . .
blockSeqs : C . . . . .
blockSeqCons : CATTCAGTCAC************** TTAATTC******************* TATGTA***** ****** CGC*** ***** G****** CCAGTTAGCTACCA******************* A** CGCT***** AT** A* CC* T*
originalCons : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCCG-TGAC----CAT----TCA---GTCACA--TTTCAGCGACC-AT-TCG-GTCACATT------TC-AGTG-A------CCTTTCAGTNACCTT-----TCAG-TCA-CCTTT-CAGTGACCAT--TC-TA--AGT------T-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATAT-CAT-GTACTAGTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG-CCCA-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCANTT----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCCCTGATTTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
finalCons : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTCACC-TTTCCG-TGACCATTCAGTCAC--------------TTTCAGCGACC-AT-TCG-GTCACATT------TC-AGTG-A------CCTTTCAGTNACCTT-----TCAG-TCA-CCTTT-CAGTGACCATTAATTC-------------------AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCGC-G-AA-TTG-TACTAGTAGTGATTCAATGACATATTATGTA-----GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGAT-GTAAT------TGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-TCGC---TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATGCCAGTTAGCTACCA-------------------TCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGCA--AAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--ATTCGCT-----AAATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAACAT--GAAATTCATA-AAATTATTTGAAAATAAA---C-AAGAATAATAACAGTCC-TGAT-TTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGGAATGAAATCGCACCTTTCAGTAAACTGAATGGTCACTGAACTCAGTCTTAGTACATGGTACTGTACTTGGTAGTCATCGTTTCAGTTACCGTTCCGATATCATTCGGTTCCGGATGACATGTATATTTCGTACCATTCAGT
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 4444444444444444444444444444444444444444444444444444 111111 5555555555555555555 111 11 11 11111111 4444444444444444444444444 333333333333333333 111111 111 111111 1111 333333333333 11111 22222222222222 1111111111 11111 3333333 1111111 6666666666666666666666666666666666 11111111 11111 3333333 333333 1 11 444444444444444444444444 111 1111 11111 11111 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11111 11 11 111 111 1 1 5555555555555555555 1 11 11 11 1 44444444 11 1 8888888888888888888888888888888888888888888888888888888888 1 44444444444444444 111 11
lowQualScore : 888888 6 8888888888888888888888888888888888888888888888888888 666 77777 2 77 4 4 111111 1 1 0 2 99999 3 3 3 3 0000000000000000000 999999 3 3 88888 000 22 7 00 3 3 00000000 3 3 4 6 5555555555555555555555555 888 4 4 0 4 99 4 55 4 4 4 5 5 5 44 0 777777777777777777 5 5 3 0 5 444444 5 777 5 5 5 111111 888 5 66 0000 5 5 222222222222 22222 5 5 5 5 66 4 4 4 55 4 4 4 4 33333333333333 4 4 66 4 0 88 1 6666 4 6 0 2 1 3333333333 66 4 22222 0 1 5 5 1111111 5 888 66 5555555 66 8888888888888888888888888888888888 0 4 4 0 0 22222222 44444 6 1 0 1 66 2222222 77 999 3 3 99 2 88 444444 6 8 11 99 99 6 6 6 99 222222222222222222222222 111 66 9999 4 4 2 5 0000 6 4 4 0 4 11111 11111 444 4 66 55 4 4 888 66 88 5 5 77 5 77 1 5 2222 1 5 0 1 5 999 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 55 1 66666 6 55 6 6 7777 66 3 111 6 8 999 3 88 0 2 1111111111111111111 3 88 44 7 88 3 999 44444444 88 3 6 1 7 1 7 7 6 3 4 0 3 6666666666666666666666666666666666666666666666666666666666 3 11111111111111111 3 777 88 1 1
lowQualScore : ...... . .................................................... ... ..... . .. . . ...... . . . . ..... . . . . ................... ...... . . ..... ... .. . .. . . ........ . . . . ......................... ... . . . . .. . .. . . . . . . .. . .................. . . . . . ...... . ... . . . ...... ... . .. .... . . ............ ..... . . . . .. . . . .. . . . . .............. . . .. . . .. . .... . . . . . .......... .. . ..... . . . . ....... . ... .. ....... .. .................................. . . . . . ........ ..... . . . . .. ....... .. ... . . .. . .. ...... . . .. .. .. . . . .. ........................ ... .. .... . . . . .... . . . . . ..... ..... ... . .. .. . . ... .. .. . . .. . .. . . .... . . . . . ... ................................................................................................................................................................................................................................... . .. . ..... . .. . . .... .. . ... . . ... . .. . . ................... . .. .. . .. . ... ........ .. . . . . . . . . . . . . .......................................................... . ................. . ... .. . .
lowQualScore : 333333 7 5555555555555555555555555555555555555555555555555555 444 99999 3 99 0 0 555555 2 0 5 4 11111 6 6 6 6 7777777777777777777 111111 3 3 33333 444 55 0 44 1 1 66666666 3 3 0 1 5555555555555555555555555 000 0 0 7 0 55 0 55 0 0 0 0 0 0 66 4 888888888888888888 0 0 9 8 0 444444 0 555 0 0 0 444444 888 0 44 6666 0 0 222222222222 55555 0 0 0 0 99 4 0 0 55 0 0 0 0 55555555555555 0 4 11 4 8 11 8 9999 4 7 1 1 1 9999999999 11 4 55555 5 0 0 0 6666666 0 888 99 7777777 11 7777777777777777777777777777777777 1 4 4 1 7 55555555 33333 6 6 7 0 44 9999999 99 333 5 5 22 2 88 444444 0 0 00 22 22 7 7 0 22 111111111111111111111111 777 11 4444 4 4 9 0 6666 1 4 4 9 4 11111 11111 999 4 11 22 4 4 888 99 22 0 7 99 7 99 6 7 1111 7 0 1 4 7 444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 88 0 77777 7 88 7 7 8888 55 7 777 7 0 666 2 11 0 0 3333333333333333333 3 33 77 3 33 3 333 00000000 33 2 7 0 3 0 3 3 5 2 5 0 2 2222222222222222222222222222222222222222222222222222222222 3 00000000000000000 2 000 88 0 0
consensus : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTC-ACC-T------TTCC------G-TGAC----CAT----TCAGTCAC---TTTCAGCGACC-AT-TCG-GTCACATTTC-AGTG-A------CCTTTCAGTNACCTT-----TCAG-TCA-CCTTT-CAGTGACCAT-T-----A---G-------TT-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCG-CG-AA-TTG-TACTAGTAGTGATTCAATGACATAT----T-ATGC--TA---GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGA-TGTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG--CC-A-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--A----TT-C-GCT-----AA--ATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGT-CCTGA--TTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
Reference ( family-236 ) : AGTGACCAT------TTAGTCACCTTTCAG-TGACCTTTCAGTC-ACC-T------TTCC------G-TGAC----CAT----TCAGTCAC---TTTCAGCGACC-AT-TCG-GTCACATTTC-AGTG-A------CCTTTCAGTNACCTT-----TCAG-TCA-CCTTT-CAGTGACCAT-T-----A---A-------TT-C----AGT-A-GC-----C-A-TTCAGTGACCATTCNGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACACTTTTAAA-AATTTG-------------------------TTT--GATTTTTG-TGACC-AATTTTCGGA-T--ATT-TCAG--AG-TCTATTT-TTGCATTCG-CG-AA-TTG-TACTAGTAGTGATTCAATGACATAT----T-ATG---TA---GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGA-TGTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCATTT-C-T-CGC--TGTTCAATGAAATTT---C-AAT-GAACGAT----T-CG-CTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGC-TGC-ATGACAAATCAAAACA-AA--TCA-TT-TCAC-A-A--------------AA-CTATA-TTTT--T-ATTATTTATT-TAATTTC--A-TTA-AACATAGCCAAAGTAGA-TT-T-TAAAA--AAATA-AAT-----TACATNATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACCGGAATCA---C--TGCATCAATTTCTCTTTG------GAG--ATG--CC-A-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCAGGGTCATTTGGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATNTCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AAAAAAAATGAAAATAA--AATGCG-AAAATGCATT---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGATC-CTTCTAA-AG-ATAGTGAATAA--AAC-T-A--A----TT-C-GCT-----AA--ATGCATTT--TCACTT----T-ATAT-ACCCA-TCAG----GACCACGTT-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGGCC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AATAATAATTAATGCTATT-GAT-AGGAAAG-A-GAGAAGCACA-----C----GA-----C----A-------T-C-----A------------TATG-----------T-CT------AAATC-AGG-----------------GCGTACATCAAGATGATTATTAA--------------AAA---TGCGAGG----------TTCAA--GA-------------A---A---------------ACG--C----T-AA--CACNT-----A-TAT--T-T-TACAAC-AT-GAAATTCAT-AAAATTATTTGAAAATAAA---C-AAGAATAATAACAGT-CCTGA--TTTTATCAACCCC-CCTCCAACC-CACCCACA--CCC-CT-GCTAT-AAACACGC--TAATTGTTTCAAACTGTTT--AAAAT-CTTGGTATATC------ATTTATA--CATGTACATGTACGTCAATTGACAGTATTTNATAGCTAGNTGACGATTAGAAAATATATTCACATGCTGCATTNATGC-ATATTTTACGG---A---C-C---A-A-CCAA-CATTTT--CATCTA-GTA----------------AATATATGTACATTT-AGTTTGCGTA--A--TCTG---ATTAGAATTGAT--AAAATGCACCATGNGAGAAATANATGTATAA
gi|1 : AGTGACCAT------TTAGTCACTTCTCAG-AGACCTTTCAGTC-ACA-T------TTTT------G-TAAC----CTT----TCAATCACA--TTTCAGTAATC-AT-TGA-GTCACATTTC-AGTG-A------CCTTTCAGTCCGCTT-----TCAG-TCA-AGTTT-CAGTGACTATGTATAGAA---G-------TTAC----GGG-G-AC-----C-T-TTCAGTGATCTTTAAGTGAAGTTTCAGT--AG-C-CAT-------CAAGTC-A-TACATTTTTAAA-AAATTG-------------------------TTT--GATTTTTG-TAATC-AACTTTCGGA-T--ATT-TCAG--AG-ATTATTT-TTGCATTCG-CG-AA-TTG-TACTAAAGATAATTCAGTGACATAT----C-ATGCATTA---GTG-TC-TATCAAGCTGTTTGTCATCATCAGTCTCTGGTCGA-TGCAATAACTATTGTTTATCTATACAC-ATGTAACTTTTAATGTTCAGTAATA---TTATCTC-AGCATTCATTT-G-T-TGC--TGTTCAATGGCATTT---C-AAT-GAACGAC----T-TG-CTGA----------T-GCC-----A-GTGCTT-GTT-AAAATGACTTT-CGTAA--CGC-TGC-ATGACAACTCGAAACA-AA--TCA-TT-TCAC-A-A--------------AA-GTAT--TTTT--T-ATAATTTATT-TAATTTC--A-TTA-AACATAACCAAAGTATA-TT-T-AAGAA--AAATA-ATTACTGGTACATTATTACAAGCTCATTTTCATTACATTTT-GT-ATCCACTCTCTTCTGGCGAATGATCG-ACCGGAATCA---C--TGCATCAATTTCTTTTT-------GAG--ATAC-CC-A-GTTAGCTATATGT----------ACCATCATTCAC-TA-TTTGCAGGGTCATTTAGAGTATATAAATCTTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCCACA-GCAATAGATGA-------ATTACTTT--TTACCAAAAAAAAATG-AAATAA--AGTGTG-AAAATGCTTT---TAAAAAAAAT-GAGCG-TA--TTTGACT--AAGATC-CCTCTAG-AG-ATAGTGAATAA--AAC-T-A--A----TT-CAGTT-----AA--TTGCATTT--TCACTT----T-ATAC-ACCCA-TC-------ACC-CGTT-C-TAGAG-CCCGAGCC-----CCAA-----G-G-GA-GATCGA--CAA-T-TTCG-GAGGA---TT--ATTAAAG-AATGTT-T---TA--CATGACC-GTGTTTACAATATTTT--ACTC-CACAA----ATATA-AATAATAATTAATGATATT-GAT-AGGAAAGTG-GAGAAGCACA-----T----GA-----C----A-------T-C------------------TATG-----------T-CT------AAATC-AGG-----------------AAGTACATCAAGATGATTATT-A--------------AAA---TGTGAGA----------TTCAA--GA-------------A---A---------------A----T----T-AA--CACAT-----A-TAT--T-T-AACAAC-AT-GAAATTCAT-AAAATTATTTCAAAATAAA---C-AAGAATAATAAAAGT-AATGA--GTTTATCAACCCC-CCTTTAAT-----------------------T-AAACACGC--TCATTGTTTCA---TCTTT--AAAAT-CTTGA-ATATC------ATATATA--CATGTACATGTACGTCAATTGACAGTATTTAATAGCTAGATGACAATTAGAGAATATATTTACATGCTGCATTCATGC-ATATTTTACGG---ATCCT-C---A-A-TCAAGCATTTT--CATCTA-GTA----------------AATATATGTACATTTAAGTTTGCGTATTA--T-TG---ATCAGAA--GATGAAAAATTCAACA-GAGAGGCCTAAATGCATAA
gi|10 : TTT--TCACTT----T-ATATTACCCA-TCAG----GACGATGTTTC-TAAAGACCCGAACC-----CCTA-----GGA-GA-GATCGGACCAG-TGTTCGAGAGGA---TTTAATTAAAT-AATGTTGTTAGTAACCATGGCC-GTGTTTACAATATTTTTAAATC-CACAA----ACAGACAATAATAATTAATGCCATT-GA--AGCATAC---GACAA-TACA-----TTGTTAA-----CTGTGA-------T-C-----A------------TATG-----------T-CT------AAATC-ACG-----------------GCGTATATCAA-ATAATTGTTAA--------------AAAAGCTGCTAGG----------TTCAA--GA-------------A---AAATGTCCAAGAGGAAACG--CCCTGT-AATACACTT-----A-TATA-T-T-CACAAC-ATTAAAATTCATTAAAATTATTTGAAAATAAGAACC-AAGAATAACAACAGT-CCTGAT-TTTTATTAACCCCACCCCCAACC-CACCCACATTCCCACT-GCTATAAAACACGCATTAATTGTTTCAAACTGTTTCAAAAATCCTTGGTATATCTACATGATTTATAGTCATGTA
gi|11 : C-AT-TCG-ATCCTTTTTC-ACTG-A------TCATTCAGTTACCTT-----TTAG-TCT-AGTTT-CAGTGACCTT-T-----A---AGTCATGTTT-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGCCATATTTCAGT--GC-C-CAT-------CAAGTC-A-TACACTTTTAAC-AATTTG-------------------------TTT--CATTTTTG-TGACT-AATTTGCGGA-TT-ATT-TCAG--AA-TCTATTT-TTGCATTTG-CG-AA-TTG-TACTAGTAGTGTTTCAACGACATAT----T-ATG---TA----TA-TT-T--CAAGCAGTTTGGCATCCTCTGCCTCTGATAGA-TGTA------ATTGTTCATCTATATTC-ATGTAATTTTTCATGTTCAGTCACA---TTATTTA-AGCATTAATTT-C-C-C-CAATGTTCAATGGAATTT---C-AAT-GACCGAT----T-CA-CTGAAATGGCGTATT-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CCTAA--CGC-TGC-ATGAAAAATTAAAACA-AA--CTA-TT-TCAC-A-A--------------AA-
gi|12 : CATTTTGTCATATTTCAGT--AC-C-CAT-------CAAGTC-A-TACCCTTTTAAC-AAATAG-------------------------TCT--GATTTTTT-TTACC-A-TTTCTGGA-T--ATT-TCAT--AG-TCTAT-T-TT------------------------------TTCAATGACATTT----T-ATG---TA-------TC-TATCAAGCAATTTGTCCTCCTCTGTCTCTGGTAGA-TGTA------ATTGTTTATCTATGTTC-ATGTAACCTTTAATGTCCAGTCATATCGTTATCTC-AGCATTCCTTT-C-TCCAT--TGTGTAATGAAATTT---C-AAT-GAACGATTTCGT-CG-TGGAT---------T-AGCTCTGTATGTACTT-GTACAAAATGACTTTCCAGAA--CGC-TGCTATGACAAATCCAAATACAATTTCA-TTCTCATAA-A--------------AA-CTATA-TTCTAGC-GATATTTATTCTAATTTCTAA-TTT-ATAATAGCCAAAGTATAGTTGT-TAAAT--GAATG-AAt
gi|13 : ATTCACATGCTGCATTAATGC-ATATTTTACG----------C---A-A-C--A-CATTTT--C--------------------------ATATATGTACATTT-GGTTTGCGTA--AATCCTGTATATT--AATTGAT--AAAATGCACCA-GTGAGAAATAGATGTATAAca
gi|14 : -AATACTAATTAATGCTATT-GAC-AGGAAAGCA-AAGCAGCATA-----C----GATTTAAC----A-------T-G-----A------------TATGATATTTTTTTTTACC------AAATC-AGGACCCTCGTGGGCATAGAGCATACGTGTAGATGATTGTTAACAATACATATAAAAAAG---TACGAGACAGTAAGATTTTCGAAGGA-------------ACATA---------------AC---C----T-AA--CACAT-----A-TTT--T-TGTACAAC-TT-GAAATACAT-AAAAATATATGAAAATAGA---C-AAGCATAATAAttcgttattagtatttctttttctgtttcttcaagttgatttatatgattttacatcgagaatatcaaaaaggcaccgacgatacatatgtattatacacacccgtgagcatttccagccgcaccctatgaccgaataaacaaataaacatcaaaaggaagccgaacaaaagcgtagccgtctatcggaatatacaaataaatatgaaaagaaatccaagtctgatagaataaacaaagaaacatgaaataaaaca
gi|15 : TTACCTTTCAG-TGACATTTCAGTG-AAC-TAAAAGGTCACTGAAAGG-TAAC----AGT----T---TTAC-----TGAATGGTC-AT-TGG-ATGA----TC-ACTG-AAAGGTACTTTTCAGTCACCTT-----TCAG-TTA-CCATT-CCGTTACCAT-TC----A---G-------TT-CAACGAAT-G-GCGTGTAC-ATTTCAGTGAAAATTCAGTTACCTATCAGT--GA-C-CAT-----------TC-AGTACTCTTTCA
gi|15 : aagatgaaaccACTTTTCAG-TCACCTTTCAGTT-ACC-A------TTCC------G-TTAC----CAT----TCAG--------TTCAACGA---ATGGCGTGT-ACATTTC-AGTG-A------------A--AA---T-----TCAG-TTA-CCTAT-CAGTGACC-------------A-------TT-C----AGT-A-CT-----C-T-TTCAGTGACCATgtgaccat
gi|16 : aagatgaaaccttacctttcagtgacatttcagtgaactaaaaggtcactgaaaggtaacagttttactgaatggtcattggatgatcactgaaaggtTGCATTT--TCACTA----T-GTAT-ATACA-TCAATTTAGGCCATGCC-C-CAAAG-CCTAAACCTTTGACCTGTGTTTG-G-GA-ATTTTA--CAA-T-TTTG-ATAGC---TT--A--AGATGAATGCT-TTT-TA----TTGCT-GTGCAAACAATATTT----ATT-CACAATGC-ACAGA-AGTAAT
gi|17 : CACCTTTCAG-TGACCTTTCAGTGGNNN-N------NNNN------N-NNNN----NNN----NNNNNNNN---NNNNNNNNNNN-NN-NNN-NNNNNNNNNN-NNNN-A------CCTTTCAGTCACCTT-----TCAG-TCA-CCATT-CCGTTACCAT-TC----A---G-------TT-C----Ag
gi|2 : acaggatgaaatcgAGTGAACTT-----TCAG-TTC-CCTTT-CAGTGACCATAT-----G---A-------AT-C----AGTCA-GC-----C----TTAGTGAACAT--CGTC-TATT--AGTG-AC-C-TTT-------CActgaatggcatgt
gi|2 : TTTC-AGTT-C------CCTTTCAGTGACCATATGAATCAG-TCAGCCTT---AGTGAACAT-C-----GTCTA-------TT------AGT-G-AC-----C-T-TTCAGTGA-CATTTAATTCCCTTTCCGTTGAC-CACAT-------TCAGTC-A-C---CTTTTgtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaacAGTGAACATCGTCTATTAGTGACCTTTCAG-TGACATTTAATTC--CC-T------TTCC------GTTGACCA--CAT----TCAGTCACCTTTTTCAGCGACC-AT-CCA-GTCAT-TTTCAAGCGAA------CCATTCAGTCACA-T-----TCAGATGA-CCTTT-CAGGCACCAT-------------------TT-T----AGT-G-AC-----T-T-TTCA-TGACC--TTAGTTACATTTCAGTG-AC-C-CATTCCATCACAATTC-A-GTGACTTTTCAA----TTG-------------------------C-----ATTTATG-TGACC---TTTTCAG--TCAAGT-TCAGTAAG--CCATTG-TAACATTCG-tcagcgaccatccagtcattttcaagcgaaccattcagtcacattcagatgacctttcaggcaccattttagtgacttttcatgaccttagttacatttcagtgacccattccatcacaattcagtgacttttcaattgcatttatgtgaccttttcagtcaagttcagtaagccattgtaacattcgtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|2 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttACCAT------TCAGTCACATT-CAGATGACCTTTCAGGC-ACCAT------TTTA------G-TGACTTTTCATGACCTTAGTTACA--TTTCAGTGACCCAT-TCC-ATCACAATTC-AGTG-A------CTTTTCAATTGCATT-----TATG-TGA-CCTTTTCAGT---CA--------A---G-------TT-C----AGT-AAGC-----C-A-TT--GTAAC-ATTC-GTCATATTTTAAT--GC-C-CCT-------CAAGTCTA-TACATTTTTAAA-AATATG-------------------------TTT--GATTTTTGGTGACC-AATTTTCGAAAT--ATT-TCAG--AG-TCTATTTATTGCATTCG-CG-AA-TTG-TACTAGTAGTAATTCAATGACATAT----TCATG---TACTAGTA-TCATACCAAGCTGTTTGTCCTCCTCTGTCTCCGGTAGA-TGTA------ATTGTTTATCTATATCC-ATGTAACTTTTTATGTTCAGTCATA---TTATCTCTAGCATT-ATTTCC-T-CGC--TGTTCAATGAAATTT---CAAATGGAACTAT----T-CG-CTGA----------TAACC-----A-GTGCTT-GTA-AAAATAACTTT-AATAA--CGCATGC-ATGACAAATCAAAACA-AA--TCATTT-TCAC-C-A--------------AATCTATA-TTTT--T-ATTATTTATT-CA---TC--ATTTACAACATAGCCAAAGTAGA-TT-T-TAAAA--AAATACAAT---------TTATTACAAGTCCATTTTCATCACATCTT-GT-AT-CACTCTCTTCTG-----T--TAGAACCGGAATCA---CATTGCATCGGTTTTTCTTTG------AAGTAATAT-CC-ACCTTAGC------TCACTGTATAGACTATTAT-TAC-TA-TTTGCAAGGTCATTTGGAGTATATAAAT-TTGAAGCTCTCTTGAAAAA--AGA-----ACACATGATTATCTCAACACGCAATAAATGATATTTTTTTTGTTTT--TTG-------ATAGTGAAAATTA--AATGCGAAAAATGCACCACAAAAAAAAAATAAAGCG-TATCTTTGACC--AAGATC-TTTCTAA-AG-ATAGCGAATAA--AACTT-A--ATTATTT-C-GCA-----AA--ATGCATTT--TCACTT----T-ATAT-A--CATTCAG----TGCCCCGCT-CAAAGAG-CCCGAATC-----CCGA-----G-ACGA-GATCGA--CAACT-TTCG-GAGGT---TT--ATTAAAT-AATGTT-TTA-TA--CATGACT-GTGTTTACAATA-TTT--ACTC-CACAATGTTAC-GA-AATAATAA-----GCTATTAGATGAGGGAAGAA-GAG-AGCATA-----C----GA-----C----ATAAATGTT-C-----ATGTATAGTGATCTATG-----------T-CT------AAATCGGGG-----------------GCGAACATCAAGATGATTATTAA--------------AAAG--TGC-AAG----------TCCAA--GACATTGTCTAAGGGA---A---------------ACG--TCG--T-AA--CATGTTATTGA-TATTAT-T-TACAGC-AT-GAAATTAATCAAAAATATTTGAAAATAAA---CAAAGAATATT---AGT-CCCCAATTTTTATCA--CCC-CCTtcatattttaatgcccctcaagtctatacatttttaaaaatatgtttgatttttggtgaccaattttcgaaatatttcagagtctatttattgcattcgcgaattgtactagtagtaattcaatgacatattcatgtactagtatcataccaagctgtttgtcctcctctgtctccggtagatgtaattgtttatctatatccatgtaactttttatgttcagtcatattatctctagcattatttcctcgctgttcaatgaaatttcaaatggaactattcgctgataaccagtgcttgtaaaaataactttaataacgcatgcatgacaaatcaaaacaaatcattttcaccaaatctatatttttattatttattcatcatttacaacatagccaaagtagattttaaaaaaatacaatttattacaagtccattttcatcacatcttgtatcactctcttctgttagaaccggaatcacattgcatcggtttttctttgaagtaatatccaccttagctcactgtatagactattattactatttgcaaggtcatttggagtatataaatttgaagctctcttgaaaaaagaacacatgattatctcaacacgcaataaatgatattttttttgttttttgatagtgaaaattaaatgcgaaaaatgcaccacaaaaaaaaaataaagcgtatctttgaccaagatctttctaaagatagcgaataaaacttaattatttcgcaaaatgcattttcactttatatacattcagtgccccgctcaaagagcccgaatcccgagacgagatcgacaactttcggaggtttattaaataatgttttatacatgactgtgtttacaatatttactccacaatgttacgaaataataagctattagatgagggaagaagagagcatacgacataaatgttcatgtatagtgatctatgtctaaatcgggggcgaacatcaagatgattattaaaaagtgcaagtccaagacattgtctaagggaaacgtcgtaacatgttattgatattatttacagcatgaaattaatcaaaaatatttgaaaataaacaaagaatattagtccccaatttttatcaccccctat
gi|20 : agtgaactttcagttccctttcagtgaccatatgaatcagtcagccttagtgaacatcgtctattagtgacctttcagtgacatttaattccctttccgttgaccacattcagtcacctttttcagcgaccatccagtcattttcaagcgaGATAG-ATCGGAATCA---C--TGCATCAATTTCTCTTTG------GGG--GTG--CCTT-GTTAGC------T----------ACCATCATCCAC-TA-TTTGCat
gi|22 : TGTACATGAACGCCAATTGACAGTTTTTGATAGCCAGCTGACGATTAGAAAATATATT-ACATGCTGCATTGATGCTATATTTTACGGA--A---CAC---A-ATCCAA-CA-TTT--CATCGACGTA----------------TATATATGTACtcttgcaaaaaaaaaataatgttgaagtaaattaagtatataattgtaaaaataaggaaca
gi|23 : GC-TGC-ATGACAAATCAAAACA-AA--TCG-TT-TCAC-A-A--------------TA-CTATA-TTTT--T-ATTATTGAT--------------TA-AA----------------------AAAA--AAATA-AGT-----TACATGATTACAGGTCAATTTTCATTACATTTT-GT-ATCCACGCTCTTCTG
gi|24 : ACAATTC-GTCATATTTCAAT--AC-C-TAA-------CAAGTC-A-TACACTGTTAAA-AATTTA-------------------------TTT--GATTT---------------TCGGA-T--ATT-TCAA--AG-TCTATTT-CTGCATTCG-ata
gi|26 : tagtcaggcacgtAATTGAT--AAAATGCACC-TGTGTGAAATACATGTAGAA
gi|27 : tgtatattTT-C-TAGAG-CCCAAGCC-----CATA-----G-A-GA-AATCGA--ATA-T-TTCG-GAAGA---TA--ATTAAAA-AATGTT-TTttctctggaatagttgttacgagtatttcttttc
gi|28 : ATTAC-ATTG-A------CCTCTCAGTGATCAT-----TCAG-TCC-TCTTT-CAGTGACCAT-
gi|3 : aT-T----AGT-A-GC-----C-A-TTCAGTAAC-ATTCTGTCATATTTCAGT--AC-T-CAT-------CAAGTC-A-TACACCTTTAAC-AATTCG-------------------------TTT------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATATTT-TTGCATTCG-CG-AA-CTG-TGCTAGTAGTGTTTCAATGATATAT-----------------GTA-TC-TATCAAGCAGTTTGTCCTCCTCTGTCTCTGGTAGA-TGTA------ATTGTTTATCTATATTC-ATGTAACTTTTAATGTTCAGTCAT-----TATCCC-AGCATTCAATT-C-TTCAT--TGTTCAATTATATTT---C-AAT-GAACGAT----T-CG-TTGA----------T-ACC-----A-GTGCTT-GTA-AAAATGACTTT-CATAA--CGT-TGC-ATGAACAATCAAAACA-AA--TCA-TT-GCAC-A-AAATCAAATAGCAATAA-CTATGTTTTT--T-AATATTCATT-AAATTTC--A-TTG-AGCATAGACAAAGTA-A-TT-TGT-------AATA-AAT-----TGCATTATTACAAGTCCATTTTGATACCATTTT-GT-ATCCACTCTCTTCTGGCGAATGATAG-ACTGGAATAA---C--TGCATCAATTTCTCTTTGGAGCTCGAG--ATGC-CC-A-GTTAGC------T----------ACCATCATCCAC-TATTTTCCAAGATCATTTGGAGTATATAAATCTTGAAACTCTCTTGAAAAAATAGA-----ACACTTGATTATCTCAACC-CTAATAGATAA-------TTTATTTC--TTAC---AAAAAAATGAAAATAA--AATGAG-AAAATGCATT------AAAAGAT-AAGCG-TA--ACTGACC--ACGATG-CCTCTAA-GG-ATAGTGAATAA--ATC-T-ATTA----TTCC-GTT-----AA--ATGCATTT--TCACTT----T-ATAT-ACCCA-TCAT----GACACCGTT-C-TAGAG-CCCTAGCA-----CCTA-----G-A-GA-GATGGA--AAA-T-TTCG-GAGG
gi|4 : -------TT-C----AGT-A-GC-----C-A-TTC-GTTAACATTCTGTCATATTTCAAT--AC-C-CAA-------CAATTC-A-TACACTGATAAA-AATTTNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAGATTTTT--TGACC-AATTTTCGGA-T---TT-TCAA--AG-TCTATTT-TTGCATTCGCCA-AA-TTG-CACTAGTAGTACTTCATTGACATAT----T-GTAC--TA---GTA-TC-TACCAAGCTGATTGTCCTCC-CTG-CTCCGGTAAATTGTA------ATTG-TTATCTATATCC-TTGCAACTTTTAATGTTCAGTCATA---TTATCTC-AGCATTCAATC-C-T-CGC--TGTTCAATGAAATTT---C-AAT--AACCAT----T-CG-CTGA------------ACC-----A---GCTT-GTA-CAAATTA--TT-CATAAACCGC-TGC-ATGACATATTCAAACA-GA--TCA-TT-TCAC-A-A--------------AA-CT-TA-TTTT--T-ATTA-TTATT-TAA-TTC--A-TTA-AACATAGTCTAA-TAGA-TT-T-TAAAA--AAA-A-AAT-----TACTTGATTACAAGTCCATTTCCATCACATTTT-GTAATCCACTCTCATTT------TGATAG-ACAGGAATCA---C--TGCATCAATTTCTCTTT-------GAG--ATG-------------------------------------TCCAC-TA-TTTGCAGGGTCA-TTGAAGTATATCAATCTTGAAACCCTATT--------AGA-----A--------TATATCAACA-TCAATAGATGATTAAT--TTTATTCTAGTTGC--AAAATAAATGAAAATAAACAATATG--AAATGGAT------AGAATAATGAGGCGCCA--TTTGACCAAAAGATCGATTCCAA-GG-ATAA-GAATAAATAACGTAA--A----AT-C-ACT-----AA----GCATTTTATCACTTAAGGT-A-AT-ACCC
gi|5 : -----ACACATGGTTATATCAACA-GCAATGG-TGA-------TTTATTCT--TTAC--AAAAT---TGAAAATAA--AATGTG-AAAATGCATA---AAAAAAAAAT-AAGCG-TA--TTTGACC--AAGAT--CTTCTAACAGAATAGAGAAT-A--AAC-T-A--A----TT---ACTCGTAAAA--ATGCTTTT--TCACTT----TAATAT-A-CCA-TCAG----GACCATGTT-C-GA-AG-CCCGAA-------CCTA-----G-A-GAGGATGTA--CA----TTCG-GAGGA---TT--ATTAAAT--ATGTT-TTA-TA--CATGACCTGTGTTTAC-ATATTTT--AATTACAC-A----ACAGA-AATAAT-ATTAATGCCATT-G---AAGCATG-ACGACATACATG-----T----AA-----CGTG-A-------T-C------------------TATG-----------TACT------AAATC-AGG-----------------GCGTATATCAAGATGATTA--AA--------------AAA---TGCTAGG-----------TCAA--GAAATGTCCAAGGGGA---A---------------ACGTCC----T-AA--AACTT-----A-TAT--TAT-TACAACAAT-TAAATTCAT--AAATTATTTGAAAAT-AA---C-AAGAATAACAACAGTCCCTGA--TTTTAT----------TC--ACCGCACCTACA--CCC-CTGGCTAT-AAACACGC--TAATTGTTTT-AACTG--T--AAAAT-CTT-GTATA----------TTATG--TATGT-CATGTCCGT--ATTGGCAGTATTTTAT-GCTAAGTGACGATAAG-AAATA-ATTCAC-----------ATGC-ATATTTT-CGGTGAA---C-CCCTATA-CCAA-CATTTTTACATCTA-GTATATTTAACGTGTACACAGTATGTATACATTT-AGTTTGCGTA--A--TCTG---TATAATATTGA---AAAATGCACCATGAG
gi|6 : gcTTAC-AGGG-A------CCATTCAGGGACCTT-----TAAG-TCA-AGTTT-CA------------------------------------GT-A-GC-----C-A-TTCAGTAA-CATTCTATCATATT-----------------------AAGTC-A-CACACTTTAAAACAA--------------------------------------TTTG-TGACC-AATTTTCAGA-T--ATT-TCAG--AG-TATTTTT-TTGCATTCG-CGAAA-TGG-TAGAAGTAGAGATTCAATGACAT-------------------GTA-TC-TATCAAGCTGTTTGTCCTCCTCTGTCTCTGGTAGA-TGTA------ATTGTTCATCTATATTC-ATGTAACTTTTAATGTTCAGTTATA---TTATCTC-AGCATTCATTT-CAT-CAC--TGTTGTATGAAATTT---C-AAT-AAACGAT----T-CG-CCAA----------A-ACC-----A-ATGCTT-GTA-CAAATAACGTT-CATAA--CGC-TGC-ATGCCAAATCAAAACA-AA--CCA-TT-TCAA-AGA--------------AA-CTATA-TTTC--TAATTATTTATT-TAATTTC--A-TTA-AAGATAACCAAAGTAGATTT-T-TTAAA--ACATA-AAT-----TACATTATTACAAGTCAATCTTCATCACATTTT-GA-ATTCACTCTTTTCTGGCGAAAGGTAG-ACCGGAATCACAGC--TGCATCAATTTCTTGTTG------GAG--ATGTCCC-A-GTTAGC------T----------ACCTTCATCCAC-TA-TTTGCAGGGTCATTTGGA-TATCGAAATCTTGAAGCTCT
gi|7 : tatttatagaag-ATGACATATCAAAACA-GA--TCA-TT-TCAC-A-A--------------AA-ATATA-GTTT--T-ATTATT-ATT-TAATCTC--A-TTA-AACATAGCCTAAGTAGA-TT-T-AAAAAAAAAATA-AAT-----TACTTGATTACAAGTCCATTTTCATCACATTTT-GT-ATCCACTCTCTTT-------TGATAG-ACCGGAATCA---T--TGCATCAATTTCTCTTTG------GAG--ATG-------------------------------------TCCAC-TA-TTTGCAGGGTCATTTGAAGTATATAAATCTTGAAGCCCTATT--------AGA-----A--------TATATCAACA-GCAATAGATGA-------TTTATTCT--TTGC--AA
gi|7 : GACC--AAGATC-CTTCTAA-AG-ATAATGAATAA--AAC-T-A--A-----------------AACTATGCATTT--TCACTT----T-ATAT-ACCCA-ACAG----GACCATGTA-C-TAGAG-CCCGAACC-----CCTA-----G-A-GA-GATCGA--CAC-T-TTCG-GAGGA---TT--ATTAAAT-AATGTT-TTA-TA--CATGACC-GTGTTTACAATATTTT--AATC-CACAA----ACAGA-AGTAATAATTAATGTTATT-GGT-ACGAAAGTA-GAGAAGCATA-----C----GC-----C----A-------TACATGTAA------------TATGA----------T-CTAAGACAAAATC-AGA-----------------TCGTACATCAAGCTGATTATTAA--------------AAAG--TGCAAG------------TCAA--GA-------------A---A---------------Attaatatctccgccacagagacagacagacagacagaccaagatccttctaaagataatgaataaaactaaaactatgcattttcactttatatacccaacaggaccatgtactagagcccgaacccctagagagatcgacactttcggaggattattaaataatgttttatacatgaccgtgtttacaatattttaatccacaaacagaagtaataattaatgttattggtacgaaagtagagaagcatacgccatacatgtaatatgatctaagacaaaatcagatcgtacatcaagctgattattaaaaagtgcaagtcaagaaaatt
gi|8 : atgacatatcaaaacagatcatttcacaaaaatatagttttattattatttaatctcattaaacatagcctaagtagatttaaaaaaaaaataaattacttgattacaagtccattttcatcacattttgtatccactctcttttgatagaccggaatcattgcatcaatttctctttggagatgtccactatttgcagggtcatttgaagtatataaatcttgaagccctattagaatatatcaacagcaatagatgatttattctttgcaattaatatctccgccacagagacagacagacagaca-------TT-C----AGT-A-GC-----CCA-TT-AGTAAC--TTCTGTCACATTTTAGT--AAAC-CA--------CAAGTC-A-TACACTTTTAAA-AAATTGGT-----------------------TTT--GATTTTTG-TGCCCCAATTTTCG-A-T--ATTGTCAG--AGATCTATTT-TTGCTTCCG-CA-AAATTGGTACTAGTAGTAATTCATTGACATATGCATT-ATAC--TA---GTAATC-TA-CAATTT-TTTGTGCTCCTCTGTCTCCGGTAGA-TGTA------ATTGTTTATCTATATTCCATGTAACTTTTAATGT-CAGTCATAATATTATTTC-AGCATTCATT--C-T-C-C--TGTTCAATGAGATTTTTTC-AAT-CAACGAT----TGCGGCTG-----------T-ACC-----A-GTGCTTTGTA-AAAATGAATTT-CATAA--CGC-TGC-ATAACAAATCAAAACA-GA--TCA-TT-TCAC-A-A--------------TG-CTATA-TTTT--T-----TTTATT---ATCT-----TTA-AA------------------------AA--AAACT-AAT-----TACATGATTACAAGTCCATTTTCATCACATTTTGGT-ATCCACTCTCTTC-------TGATAG-ACC-GAATCA---C--TGCATCAATTTCTCTTTG------GAG--AT-------------------------------------ATCCGC-TA-TTTGCAGGGTCATTTTAAGTATGTAAATCTTG-AGCTCTATTGAAtt
gi|9 : tccagtTTCTCTTTA------AAC--ATG--CC-AAGTAAGT------T----------ATCATCATCCACATA-TTTGCAGAGTC------------------TCGAAGCTCTCTTAAAACA--GGACTGTCATACATTATTATTTCAACA-CCAGTAGATGG-------TCAATTCC--TTAC--ATAAAATATGAAAAT-A--AATGC
gi|9 : T-----AA--GTGCATTG--TCTTTT----T-ATAT-ACACA-CCAG----GACCCCGTT-T-TAAAC-CCTGAACC-----AATA-----G-G-GA-GATTTA--CAA-T-TCCG-AAAGACATTT--ATGAAAT----GTT-TTA-----CGTTGCC-ATGTCAATAATATTTT--ATTT-TGCAA----ACTGA-AATA-TAAGTAATACTATT-TAT-AGGGAAA-A-------CACAGTTTGC----AA-----T----A-------C-C-----A------------TATG---------------------AAA-----------------------GTGTGAGTCAAGA-----AT--A--------------ATA---TCCAAAG----------T------GA-------------A---T---------------GTG--C----TCAAT-CACTT-----AGTAT--T-T-TACAAA-A--GAAA--------------TTGTAAATAGA---C-AAGCATAATAGCA-----TGG--GTTTATCAAatgtttttgaagagccaagtctgaccatctgtttataaaggtgttgctcaaaacgtggagagtaacaggaccatcttagattgttgttcaaataagtgcattgtctttttatatacacaccaggaccccgttttaaaccctgaaccaatagggagatttacaattccgaaagacatttatgaaatgttttacgttgccatgtcaataatattttattttgcaaactgaaatataagtaatactatttatagggaaaacacagtttgcaataccatatgaaagtgtgagtcaagaataatatccaaagtgaatgtgctcaatcacttagtattttacaaaagaaattgtaaatagacaagcataatagcatgggtttatcaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAGGAATGAAATCGCACCTTTCAGTAAACTGAATGGTCACTGAACTCAGTCTTAGTACATGGTACTGTACTTGGTAGTCATCGTTTCAGTTACCGTTCCGATATCATTCGGTTCCGGATGACATGTATATTTCGTACCATTCAGT
Unaligned ( gi|19 ): CAAAAGAAATCCAAGCCCGATAGAATAAAAAAAGAAACATCAAATAAAACACAGGACAATCAGTATATATGGTAAAACCATTTACCCACCCACCCCCTTCTGACTATGGAAAATCTAATTTCCACTGTTTAATG
Unaligned ( gi|21 ): CAGGATGAAATCGCACCTTTCAGTAAACTGAATGGTCACACTGAACTTGCAGTCGTAGTACATGGTAACTGTACTGGTAGTCATTTTCAGTTACCGTTCCGATATCATTCGGTTCACTGGATGACATGT
Unaligned ( gi|25 ): TCAATCATTGTCCTTAAAATCAACAGAGATGGAAACTGTAACAATGCATTTAAAATTCAATGCAGATTCAACATCAAATATCCTAATAGAAAGAAATTAAATT