lowQualScore : 1 111 33333333333333333333 2222222222222 1 444444444444444444444 1 1 11 111 11
lowQualScore : 5 3 99 777 4 55 1 5 0 2 2 8888888 2 2 99999999999999999999 0 33 6666 3 3 3 3 3333333333333 44 3 0 0 444444444444444444444 66 7 5 1 0 44 0 5 6 333 33
lowQualScore : . . .. ... . .. . . . . . ....... . . .................... . .. .... . . . . ............. .. . . . ..................... .. . . . . .. . . . ... ..
lowQualScore : 0 2 00 666 0 77 3 9 3 9 9 9999999 9 9 55555555555555555555 2 44 1111 1 1 1 1 6666666666666 66 3 1 0 555555555555555555555 99 1 0 9 0 00 4 0 0 000 66
consensus : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TA-T-TT-AACAG----A--AATA-TTTTTTTCCG-TG----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT-TCT---T-CTTAAATTTTG-TA--CCCCCGA-TTAGGAAA-TTTNATGTAAT-TTGCAGAAAT-AATCN-ATTGTTTACAAA
Reference ( gi|7 ) : CACTTCAAGGTG-TCACACC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TA-T-TT-AACAG----A--AATATTTTTTTTTCG-TG----CGC-G-AT-TTT-T-T-----CC-T--TTC--CC-CTCAT-TTTT-TCT--GT-CTTAAATTTCG-TA--CCCCCAA-TGAGGAAA-TTTTATGTAAT-TTACAGAAAT-GCTCA-ATTGTTTACAAA
gi|2 : CAGTTCA-GGTA-TCACAGG-GGTAATC-GTCCAATCAAAAT-----TAAT---TTG-C-AGTTC-----------------------------AATATTTTTTTCCC--TG----TGT-G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT-------------------G-TA--CCCTTGA-CCAGGAAA-CTT---GTAAT-TTGTAGAAAT-AATCAGGGTGTTTACAAA
gi|3 : tctcagcagctCAGTTCA-GGTA-TCACA---GGGAATC-GTCCAATCAAAA---------TTAATTG-C-AGTTC-----------------------------AATATTTTTCCCT-G-TG--------G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT-------------------G-TA--CCCTTGA-CCAGGAAA-CT---TGTTAT-TTGTAGAAAT-AATCAGGGTGTTTACAAAcatgaattcggatggtcactaagtcttgtttatgaaaaggaaatgttgtgtaaggcactgtttttccaatgtacatgtgttccctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgggatcatttcaacaaactgatttttcataattgttttcctatttggtaaaatttcgtaaaaaaataa
gi|22 : tctcagcagctTTCAAGGTAATC-CACCTGGTAATTTGTC-AATCAAAATGAACTTAGTCcatgaattcggatggtcactaaagtcttgtttatgaaaaggaaatgttgtgtaaagcactgttttttccaatgtacatgtgttcctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgatcatttcaacaaactgattttcataatgttttcc
gi|1 : TCAAAGTA-TCACAGT-GGTAAT---------------GAACTTGGTCAATTG-A-AGTTGCA-----A-TA-T-TT---------------TTTTTTTTTTTTT-AGAAATCAT-G-AT-TTT-T--------C-T--TACGGCC-CCC-T-TTTT-TAT--GT-C---------------CCCCTGA-TTAGGAAA-TTTGGTGTAAT-TTGTAGAAAT-AATCA-CTTGTTCACAA
gi|13 : TTAAGGCA-TCAT------TAATT-GTT-GACCAA-------TTAGTCCATTT-C-AACTTCA---T-A-TA-T-TT-AA--G------------------TTCT-TG----CGCTA-AT-CTT-T-T-----CA-T--TTC--CT-CTTAT-TCTG-TCC---T-CTTAA-TTTCGGTA--CCCCTGA-TTAGGAAA-Tgaggcaatatatgatgttggtaggcgctcagtctgcacacatgtgagaaacatgtgagttttaggggagtcttgttgtcaggtaattttgtttttcgaaaatggtgtgtagggtattgtttttccggtgtcagcagacgatacaggtaatgttgaacattcctatctgcattattcggcatcaatctgagttttggttattttttccctgtataataataattaccggtgcaataataa
gi|12 : AAGGTG-TCACAAT-GATAGTT-GTCCAATCAAATTGAACTTAGTCATTTG-T-TTTTCCAAACC-A-TA-TGTT-AATAA----A-----------TTTCCA-TG----CAC-A-AT-TTTCT-T-----TC-T--TTC--GT-CTTTT-TTTT-TTT--CCACTTAAATT
gi|17 : taAGGTA-TCAAACC-GGTAATT-GTCCAAT-AGAATGGACTTAGTCAATTG-T-AGTTCGA---T-A-TA-T-TT-TACAG----A--AATA--TTTTTTCCG-CG----AGT-A-ATATTT-T-T-----CA-T--TT
gi|19 : AGGTA-TCACATC-GGTAATT-G----ACCAAAATGTACTTAGTCAATTG-T-AGTTCCA---A-A-TA-T-TT-AACAG----A--AATA-TTTTTATCCG-TG----CG
gi|16 : CACGAC-GTTAATT-GTTCAATCAAAATGAA------CAA-CG-TCAGTTCCA---T-AGGA-T-TT-TACAG----AGTAA-----TTTTTTCA-TG----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-TTTAC-TCTT-T
gi|18 : GTAATT-GTGCAATCAAAATGAA------CAATGT-T-AGTTCCA---T-AGGA-T-TT-TACAG-------AGTA--TTTTTTTCA-TG----CGC-T-AT-TTT-TCT-----CA-T--TTT--CC-TTTAC-TCTT-TTT--t
gi|4 : TCAAAATGAACTCGGTTAATTG-T-AGCTCCA---T-A-TA-T-AT-TACAG----A--AAT--TGTTTTTTCG-TG----GGC-G-AT-TTT-T-TTTTTTCA-T--TTC--CC-CTAAT-TTTTGTCC--CT-TCTAAATTTTA-TA--CCCCCCA-TTAGGAAA-TTTCATGTAAT-TTGCAGAAAT-
gi|11 : ATTGCT-AGTTCCA---T-A-TA-T-TT-AACAGAAAAA--AAAA-----TTTCCG-TG----CGC-GCAT-TTT-T-T-----CA-T--TTC--CCACTCAT-CTTT-TTT--CT-CTTAAannnnnnnnnngcaacctagatacatccctatatttagactacttcctggggcgtccacaggctattacaaacacgtggttttgagggtagagctgttcgcggacaaatgctgtgtctgatgtcaatttttcctgatgcaggcagatgagacaggtaa
gi|6 : TA-T-AGTTCCA---T-A-TATT-TT-AACA-----A--AATATTTTTTTTCCG-TG----CGC-G-AT-TTT-T-T-----TCAT--TTC--CC-CTCATCTTTT-TCTTATT-CTTAAATTTTG-TAACCCCCCGATTGAGGAAAGTTTTATGTAAT-TTGCAGAAAT-ACTCT-ATTGTTTACAAnnnnnnnnnnnnnnnnnnnnnnnnnacacaaagtttgtataatccac
gi|8 : TA-T-AGTTCCA---T-A-TA-T-TTTAACAG----A--AATATTTTTTC--CG-TG----CGC-G-AT-TTT-T-T-----CA----TTC--CC-CTCATCTTTT-TC----T-CTTAAAATTTG-TA--CCGCCGA-TTAGGAAAGTTGCATGTATTATTGCAGAAAT-ACTCT-ATTGTTTACAAgggaaactattttctgtataagataagacgacttcctgggcgcccacaggctgtttacaaacacgaggaaaacacgggttttgagggtg
gi|9 : TG-T-AGTTCCA---TTA-TA-T-TT-AACAGGAAAA--AAAA-----TTTCCGTTG----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-ATCATCTTTT-TC----T-CTTAAATTTT--TG--TCCCCGA-TTAGGAAA-GTTGATGT-AT-TTGCAGAAATAGCTCT-ATTGTTTACAAgcggaactattttctgtatagaataagacggcttcctggggcgccc
gi|15 : TGTAAT-TTGCAGAAAT-AATCA-ATTGTTTACgggaactaattttctgtagtaagatagacgacttcctggggcgc
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CTTTTTTTTTTTCCACTTAAATTATCCTTTTCTTTAATTTTTGAACTCGCTGATTAGAAAATTTTCAGTTGTGAAATTTGTTACTATTGTAAATTAAAATCAGTTATTTAAACTGGAGCTATGAGATGTTGGTACCTGAGGCATCTTAGGATTTTTACTTACCATGTGAAAAACACATGGTTTTTGACTTTTGATGGTCTTGTTTATGGGGGAAAAGAGTTGTGTGGGTGTTGGTTTTCCAATGTCAAAGAAGAGATAGGTAACATGCAACATT
Unaligned ( gi|10 ): ATCACACTAGTAGGCTATTTACGCTCATGTGAAAAACGTAGTTTTGAGGGTAGTCCTGTTTGCAGGTAAACAAAAATTCCAAAAAGCCATGACAGATGTTGTTTTTCCTGTCAGCAGATGAGAGATACTTCC
Unaligned ( gi|14 ): AAAATGCATGTAAGGTGTCTTGTGTCGGTAGACGAGACAGGTAACATTGACCATTTCAACCGAACTCATTTCATCAAATCAATTTGTGGTTATCAATTACTTATTTCCTTTAAAATAA
Unaligned ( gi|20 ): GGCTACTTCCTGAGGTGAACCCAGGCTGTTGAAATACGTTGATTTGAGGGTAGTCTTATTTGCAGTCAAA
Unaligned ( gi|21 ): ATGCCGTGTCGGGTATCATTTTTCTGATACGGGCAGACGAGACAGGTAAC
Alignments
lowQualScore : 111 11111111111 11111111 22222222222 1 11
lowQualScore : 1 4 111 3 3 00 4 2 2 77777 5 2 33333333333 2 44 2 66666 2 2 2 2 2 11111111 77 44 3 6 55555555555 11 11 66 4 8 0 4 66 11
lowQualScore : . . ... . . .. . . . ..... . . ........... . .. . ..... . . . . . ........ .. .. . . ........... .. .. .. . . . . .. ..
lowQualScore : 9 4 000 6 6 88 6 7 7 55555 3 7 00000000000 7 22 7 77777 9 9 9 9 9 99999999 99 22 1 2 77777777777 66 33 11 4 9 8 4 99 00
consensus : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT---TCC-T---CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATAN-TC-NATTGTTTACAAA
Reference ( family-2270 ) : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT---TCT-T---CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATAA-TC-NATTGTTTACAAA
gi|1 : TCAAAGTA-TCACAGT-GGTAAT---------------GAACTTGGTCAATTG-A-AGTTGCA-----A-TAT-TT-------------TT-TTTTTTT-TTTT-AGAAATCAT-G-AT-TTT-T--------C-T--TACGGCC-CCC----TTT---T--------TTA-----TGTC--CCCCTGATT-AGGAAA-TTTGGTGTAAT-TTGTAGAAATAA-TC-ACTTGTTCACAA
gi|11 : ATTGCT-AGTTCCA---T-A-TAT-TT-AACAG----AAAAA-AAAATTT-CCGT-G-----CGC-GCAT-TTT-T-T-----CA-T--TTC--CCACTCATCTTTT---TTC-T---CTTAAgaggcaatatatgatgttggtaggcgctcagtctgcacacatgtgagaaacatgtgagttttaggggagtcttgttgtcaggtaattttgtttttcgaaaatggtgtgtagggtattgtttttccggtgtcagcagacgatacaggtaatgttgaacattcctatctgcattattcggcatcaatctgagttttggttattttttccctgtataataataattaccggtgcaataataa
gi|12 : AAGGTG-TCACAAT-GATAGTT-GTCCAATCAAATTGAACTTAGTCATTTG-T-TTTTCCAAACC-A-TATGTT-AATAA----A---------TTT-CCAT-G-----CAC-A-AT-TTTCT-T-----TC-T--TTC--GT-CTT-T-TTTT---TTT-TCCACTTAAATTnnnnnnnnnnnnnnnnnnnnnnnnnacacaaagtttgtataatccac
gi|13 : taTTAAGGCA-TCAT------TAATT-GTT-GACCAA-------TTAGTCCATTT-C-AACTTCA---T-A-TAT-TT-AA-----------G-TTCTT--------G-----CGCTA-AT-CTT-T-T-----CA-T--TTC--CT-CTTAT-TCTG---TCC-T---CTTAATTTCGGTA--CCCCTGATT-AGGAAA-T
gi|15 : TGTAAT-TTGCAGAAATAA-TC-AATTGTTTAC
gi|16 : ttCACGAC-GTTAATT-GTTCAATCAAAATGAA------CAA-CG-TCAGTTCCA---T-AGGAT-TT-TACAG-----AGTA-ATTTTTT--CAT-G-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-TTTAC-TCTT---Ttgtagtttggttagacgacacctggggagcacacagactgtctacaagcacgtggaaaacgcgtggttttgag
gi|17 : AGGTA-TCAAACC-GGTAATT-GTCCAAT-AGAATGGACTTAGTCAATTG-T-AGTTCGA---T-A-TAT-TT-TACAG----AAATA--TTTTTT-CCGC-G-----AGT-A-ATATTT-T-T-----CA-T--TTt
gi|18 : GTAATT-GTGCAATCAAAATGAA------CAATGT-T-AGTTCCA---T-AGGAT-TT-TACAG-----AGTA-TTTTTTT--CAT-G-----CGC-T-AT-TTT-TCT-----CA-T--TTT--CC-TTTAC-TCTT---TTT-
gi|19 : AGGTA-TCACATC-GGTAATT-G----ACCAAAATGTACTTAGTCAATTG-T-AGTTCCA---A-A-TAT-TT-AACAG----AAATA-TTTTTAT-CCGT-G-----CG
gi|2 : CAGTTCA-GGTA-TCACAGG-GGTAATC-GTCCAATCAAAAT-----TAAT---TTG-C-AGTTC--------------------------AATA-TTTTTTT-CCCT-G-----TGT-G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT---------------------GTA--CCCTTGACC-AGGAAA-CTT---GTAAT-TTGTAGAAATAA-TCAGGGTGTTTACAAA
gi|22 : tctcagcagctTTCAAGGTAATC-CACCTGGTAATTTGTC-AATCAAAATGAACTTAGTCcatgaattcggatggtcactaagtcttgtttatgaaaaggaaatgttgtgtaaggcactgtttttccaatgtacatgtgttccctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgggatcatttcaacaaactgatttttcataattgttttcctatttggtaaaatttcgtaaaaaaataa
gi|3 : CAGTTCA-GGTA-TCACA---GGGAATC-GTCCAATCAAAAT---------TAATTG-C-AGTTC--------------------------AATA-TTTTTCC-CTGT-G---------G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT---------------------GTA--CCCTTGACC-AGGAAA-CTT---GTTAT-TTGTAGAAATAA-TCAGGGTGTTTACAAA
gi|4 : tctcagcagctTCAAAATGAACTCGGTTAATTG-T-AGCTCCA---T-A-TAT-AT-TACAG----AAAT--TGTTTTT-TCGT-G-----GGC-G-AT-TTT-T-TTTTTTCA-T--TTC--CC-CTAAT-TTTTGTCCCT-T---CT-AAATTTTATA--CCCCCCATT-AGGAAA-TTTCATGTAAT-TTGCAGAAATAcatgaattcggatggtcactaaagtcttgtttatgaaaaggaaatgttgtgtaaagcactgttttttccaatgtacatgtgttcctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgatcatttcaacaaactgattttcataatgttttcc
gi|6 : TA-T-AGTTCCA---T-A-TAT-TTTAACA-----AAATA-TTTTTTTTCCGT-G-----CGC-G-AT-TTT-T-TT----CA-T--TTC--CC-CTCATCTTTT---TCT-TATTCTTAAATTTTGTAACCCCCCGATTGAGGAAAGTTTTATGTAAT-TTGCAGAAATAC-TC-TATTGTTTACAAnnnnnnnnnngcaacctagatacatccctatatttagactacttcctggggcgtccacaggctattacaaacacgtggttttgagggtagagctgttcgcggacaaatgctgtgtctgatgtcaatttttcctgatgcaggcagatgagacaggtaa
gi|7 : CACTTCAAGGTG-TCACACC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATATTTTTTTT-TCGT-G-----CGC-G-AT-TTT-T-T-----CC-T--TTC--CC-CTCAT-TTTT---TCTGT---CTTAAATTTCGTA--CCCCCAATG-AGGAAA-TTTTATGTAAT-TTACAGAAATGC-TC-AATTGTTTACAAAgggaaactattttctgtataagataagacgacttcctgggcgcccacaggctgtttacaaacacgaggaaaacacgggttttgagggtg
gi|8 : TA-T-AGTTCCA---T-A-TAT-TTTAACAG----AAATA-TTTTTT--CCGT-G-----CGC-G-AT-TTT-T-T-----CA-T--T-C--CC-CTCAT-CTTT---TTC-T---CTTAAAATTTGTA--CCGCCGATT-AGGAAAGTTGCATGTATTATTGCAGAAATAC-TC-TATTGTTTACAA
gi|9 : TG-T-AGTTCCA---TTA-TAT-TT-AACAGGAAAAAAAA-TTT-----CCGTTG-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-ATCAT-CTTT---TTC-T---CTTAAATTTT-TG--TCCCCGATT-AGGAAA-GTTGATGT-AT-TTGCAGAAATAGCTC-TATTGTTTACAAgcggaactattttctgtatagaataagacggcttcctggggcgccc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTTTTTTTTCCACTTAAATTATCCTTTTCTTTAATTTTTGAACTCGCTGATTAGAAAATTTTCAGTTGTGAAATTTGTTACTATTGTAAATTAAAATCAGTTATTTAAACTGGAGCTATGAGATGTTGGTACCTGAGGCATCTTAGGATTTTTACTTACCATGTGAAAAACACATGGTTTTTGACTTTTGATGGTCTTGTTTATGGGGGAAAAGAGTTGTGTGGGTGTTGGTTTTCCAATGTCAAAGAAGAGATAGGTAACATGCAACATT
Unaligned ( gi|10 ): ATCACACTAGTAGGCTATTTACGCTCATGTGAAAAACGTAGTTTTGAGGGTAGTCCTGTTTGCAGGTAAACAAAAATTCCAAAAAGCCATGACAGATGTTGTTTTTCCTGTCAGCAGATGAGAGATACTTCC
Unaligned ( gi|14 ): AAAATGCATGTAAGGTGTCTTGTGTCGGTAGACGAGACAGGTAACATTGACCATTTCAACCGAACTCATTTCATCAAATCAATTTGTGGTTATCAATTACTTATTTCCTTTAAAATAA
Unaligned ( gi|20 ): GGCTACTTCCTGAGGTGAACCCAGGCTGTTGAAATACGTTGATTTGAGGGTAGTCTTATTTGCAGTCAAA
Unaligned ( gi|21 ): ATGCCGTGTCGGGTATCATTTTTCTGATACGGGCAGACGAGACAGGTAAC
Alignments
lowQualScore : 111 11111111111 11111111 11111111111 11
lowQualScore : 1 4 111 3 3 00 4 2 2 77777 5 2 33333333333 2 44 2 66666 2 2 2 2 2 11111111 77 88 3 3 88888888888 11 11 66 4 8 77 4 55 11
lowQualScore : . . ... . . .. . . . ..... . . ........... . .. . ..... . . . . . ........ .. .. . . ........... .. .. .. . . .. . .. ..
lowQualScore : 9 4 000 6 6 88 6 7 7 55555 3 7 00000000000 7 22 7 77777 9 9 9 9 9 99999999 99 55 1 1 44444444444 66 33 11 4 9 88 4 44 00
consensus : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT--TCC-T----CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
Reference ( family-2270 ) : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT--TCC-T----CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
gi|1 : TCAAAGTA-TCACAGT-GGTAAT---------------GAACTTGGTCAATTG-A-AGTTGCA-----A-TAT-TT-------------TT-TTTTTTT-TTTT-AGAAATCAT-G-AT-TTT-T--------C-T--TACGGCC-CCC----TTT--T---------TTA-----TGTC--CCCCTGATT-AGGAAA-TTTGGTGTAAT-TTGTAGAAATA-ATC-ACTTGTTCACAA
gi|11 : ATTGCT-AGTTCCA---T-A-TAT-TT-AACAG----AAAAA-AAAATTT-CCGT-G-----CGC-GCAT-TTT-T-T-----CA-T--TTC--CCACTCATCTTTT--TTC-T----CTTAAgaggcaatatatgatgttggtaggcgctcagtctgcacacatgtgagaaacatgtgagttttaggggagtcttgttgtcaggtaattttgtttttcgaaaatggtgtgtagggtattgtttttccggtgtcagcagacgatacaggtaatgttgaacattcctatctgcattattcggcatcaatctgagttttggttattttttccctgtataataataattaccggtgcaataataa
gi|12 : AAGGTG-TCACAAT-GATAGTT-GTCCAATCAAATTGAACTTAGTCATTTG-T-TTTTCCAAACC-A-TATGTT-AATAA----A---------TTT-CCAT-G-----CAC-A-AT-TTTCT-T-----TC-T--TTCGTCT-TTTTT-TTTT--TCC-A----CTTAAATTnnnnnnnnnnnnnnnnnnnnnnnnnacacaaagtttgtataatccac
gi|13 : taTTAAGGCA-TCAT------TAATT-GTT-GACCAA-------TTAGTCCATTT-C-AACTTCA---T-A-TAT-TT-AA-----------G-TTCTT--------G-----CGCTA-AT-CTT-T-T-----CA-T--TTC--CT-CTTAT-TCTG--TCC-T----CTTAATTTCGGTA--CCCCTGATT-AGGAAA-T
gi|15 : TGTAAT-TTGCAGAAATA-ATC-AATTGTTTAC
gi|16 : ttCACGAC-GTTAATT-GTTCAATCAAAATGAA------CAA-CG-TCAGTTCCA---T-AGGAT-TT-TACAG-----AGTA-ATTTTTT--CAT-G-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-TTTAC-TCTT--Ttgtagtttggttagacgacacctggggagcacacagactgtctacaagcacgtggaaaacgcgtggttttgag
gi|17 : AGGTA-TCAAACC-GGTAATT-GTCCAAT-AGAATGGACTTAGTCAATTG-T-AGTTCGA---T-A-TAT-TT-TACAG----AAATA--TTTTTT-CCGC-G-----AGT-A-ATATTT-T-T-----CA-T--TTt
gi|18 : GTAATT-GTGCAATCAAAATGAA------CAATGT-T-AGTTCCA---T-AGGAT-TT-TACAG-----AGTA-TTTTTTT--CAT-G-----CGC-T-AT-TTT-TCT-----CA-T--TTT--CC-TTTAC-TCTT--T
gi|19 : AGGTA-TCACATC-GGTAATT-G----ACCAAAATGTACTTAGTCAATTG-T-AGTTCCA---A-A-TAT-TT-AACAG----AAATA-TTTTTAT-CCGT-G-----CGtt
gi|2 : CAGTTCA-GGTA-TCACAGG-GGTAATC-GTCCAATCAAAAT-----TAAT---TTG-C-AGTTC--------------------------AATA-TTTTTTT-CCCT-G-----TGT-G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT---------------------GTA--CCCTTGACC-AGGAAA-CTT---GTAAT-TTGTAGAAATA-ATCAGGGTGTTTACAAA
gi|22 : tctcagcagctTTCAAGGTAATC-CACCTGGTAATTTGTC-AATCAAAATGAACTTAGTCcatgaattcggatggtcactaagtcttgtttatgaaaaggaaatgttgtgtaaggcactgtttttccaatgtacatgtgttccctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgggatcatttcaacaaactgatttttcataattgttttcctatttggtaaaatttcgtaaaaaaataa
gi|3 : CAGTTCA-GGTA-TCACA---GGGAATC-GTCCAATCAAAAT---------TAATTG-C-AGTTC--------------------------AATA-TTTTTCC-CTGT-G---------G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT---------------------GTA--CCCTTGACC-AGGAAA-CT---TGTTAT-TTGTAGAAATA-ATCAGGGTGTTTACAAA
gi|4 : tctcagcagctTCAAAATGAACTCGGTTAATTG-T-AGCTCCA---T-A-TAT-AT-TACAG----AAAT--TGTTTTT-TCGT-G-----GGC-G-AT-TTT-T-TTTTTTCA-T--TTC--CC-CTAAT-TTTTGTCCC-T----TCTAAATTTTATA--CCCCCCATT-AGGAAA-TTTCATGTAAT-TTGCAGAAATA-catgaattcggatggtcactaaagtcttgtttatgaaaaggaaatgttgtgtaaagcactgttttttccaatgtacatgtgttcctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgatcatttcaacaaactgattttcataatgttttcc
gi|6 : TA-T-AGTTCCA---T-A-TAT-TTTAACA-----AAATA-TTTTTTTTCCGT-G-----CGC-G-AT-TTT-T-TT----CA-T--TTC--CC-CTCAT-CTTT--TTC-TTATTCTTAAATTTTGTAACCCCCCGATTGAGGAAAGTTTTATGTAAT-TTGCAGAAATA-CTC-TATTGTTTACAAnnnnnnnnnngcaacctagatacatccctatatttagactacttcctggggcgtccacaggctattacaaacacgtggttttgagggtagagctgttcgcggacaaatgctgtgtctgatgtcaatttttcctgatgcaggcagatgagacaggtaa
gi|7 : CACTTCAAGGTG-TCACACC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATATTTTTTTT-TCGT-G-----CGC-G-AT-TTT-T-T-----CC-T--TTC--CC-CTCAT-TTTT--TCTGT----CTTAAATTTCGTA--CCCCCAATG-AGGAAA-TTTTATGTAAT-TTACAGAAATG-CTC-AATTGTTTACAAAgggaaactattttctgtataagataagacgacttcctgggcgcccacaggctgtttacaaacacgaggaaaacacgggttttgagggtg
gi|8 : TA-T-AGTTCCA---T-A-TAT-TTTAACAG----AAATA-TTTTTT--CCGT-G-----CGC-G-AT-TTT-T-T-----CA-T--T-C--CC-CTCAT-CTTT--TTC-T----CTTAAAATTTGTA--CCGCCGATT-AGGAAAGTTGCATGTATTATTGCAGAAATA-CTC-TATTGTTTACAA
gi|9 : TG-T-AGTTCCA---TTA-TAT-TT-AACAGGAAAAAAAA-TTT-----CCGTTG-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-ATCAT-CTTT--TTC-T----CTTAAATTTT-TG--TCCCCGATT-AGGAAA-GTTGATGT-AT-TTGCAGAAATAGCTC-TATTGTTTACAAgcggaactattttctgtatagaataagacggcttcctggggcgccc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTTTTTTTTCCACTTAAATTATCCTTTTCTTTAATTTTTGAACTCGCTGATTAGAAAATTTTCAGTTGTGAAATTTGTTACTATTGTAAATTAAAATCAGTTATTTAAACTGGAGCTATGAGATGTTGGTACCTGAGGCATCTTAGGATTTTTACTTACCATGTGAAAAACACATGGTTTTTGACTTTTGATGGTCTTGTTTATGGGGGAAAAGAGTTGTGTGGGTGTTGGTTTTCCAATGTCAAAGAAGAGATAGGTAACATGCAACATT
Unaligned ( gi|10 ): ATCACACTAGTAGGCTATTTACGCTCATGTGAAAAACGTAGTTTTGAGGGTAGTCCTGTTTGCAGGTAAACAAAAATTCCAAAAAGCCATGACAGATGTTGTTTTTCCTGTCAGCAGATGAGAGATACTTCC
Unaligned ( gi|14 ): AAAATGCATGTAAGGTGTCTTGTGTCGGTAGACGAGACAGGTAACATTGACCATTTCAACCGAACTCATTTCATCAAATCAATTTGTGGTTATCAATTACTTATTTCCTTTAAAATAA
Unaligned ( gi|20 ): GGCTACTTCCTGAGGTGAACCCAGGCTGTTGAAATACGTTGATTTGAGGGTAGTCTTATTTGCAGTCAAA
Unaligned ( gi|21 ): ATGCCGTGTCGGGTATCATTTTTCTGATACGGGCAGACGAGACAGGTAAC
Alignments
lowQualScore : 111 11111111111 11111111 11111111111 11
lowQualScore : 1 4 111 3 3 00 4 2 2 77777 5 2 33333333333 2 44 2 66666 2 2 2 2 2 11111111 77 88 3 3 88888888888 11 11 66 4 8 77 4 55 11
lowQualScore : . . ... . . .. . . . ..... . . ........... . .. . ..... . . . . . ........ .. .. . . ........... .. .. .. . . .. . .. ..
lowQualScore : 9 4 000 6 6 88 6 7 7 55555 3 7 00000000000 7 22 7 77777 9 9 9 9 9 99999999 99 55 1 1 44444444444 66 33 11 4 9 88 4 44 00
consensus : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT--TCC-T----CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
Reference ( family-2270 ) : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT--TCC-T----CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
gi|1 : TCAAAGTA-TCACAGT-GGTAAT---------------GAACTTGGTCAATTG-A-AGTTGCA-----A-TAT-TT-------------TT-TTTTTTT-TTTT-AGAAATCAT-G-AT-TTT-T--------C-T--TACGGCC-CCC----TTT--T---------TTA-----TGTC--CCCCTGATT-AGGAAA-TTTGGTGTAAT-TTGTAGAAATA-ATC-ACTTGTTCACAA
gi|11 : ATTGCT-AGTTCCA---T-A-TAT-TT-AACAG----AAAAA-AAAATTT-CCGT-G-----CGC-GCAT-TTT-T-T-----CA-T--TTC--CCACTCATCTTTT--TTC-T----CTTAAgaggcaatatatgatgttggtaggcgctcagtctgcacacatgtgagaaacatgtgagttttaggggagtcttgttgtcaggtaattttgtttttcgaaaatggtgtgtagggtattgtttttccggtgtcagcagacgatacaggtaatgttgaacattcctatctgcattattcggcatcaatctgagttttggttattttttccctgtataataataattaccggtgcaataataa
gi|12 : AAGGTG-TCACAAT-GATAGTT-GTCCAATCAAATTGAACTTAGTCATTTG-T-TTTTCCAAACC-A-TATGTT-AATAA----A---------TTT-CCAT-G-----CAC-A-AT-TTTCT-T-----TC-T--TTCGTCT-TTTTT-TTTT--TCC-A----CTTAAATTnnnnnnnnnnnnnnnnnnnnnnnnnacacaaagtttgtataatccac
gi|13 : taTTAAGGCA-TCAT------TAATT-GTT-GACCAA-------TTAGTCCATTT-C-AACTTCA---T-A-TAT-TT-AA-----------G-TTCTT--------G-----CGCTA-AT-CTT-T-T-----CA-T--TTC--CT-CTTAT-TCTG--TCC-T----CTTAATTTCGGTA--CCCCTGATT-AGGAAA-T
gi|15 : TGTAAT-TTGCAGAAATA-ATC-AATTGTTTAC
gi|16 : ttCACGAC-GTTAATT-GTTCAATCAAAATGAA------CAA-CG-TCAGTTCCA---T-AGGAT-TT-TACAG-----AGTA-ATTTTTT--CAT-G-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-TTTAC-TCTT--Ttgtagtttggttagacgacacctggggagcacacagactgtctacaagcacgtggaaaacgcgtggttttgag
gi|17 : AGGTA-TCAAACC-GGTAATT-GTCCAAT-AGAATGGACTTAGTCAATTG-T-AGTTCGA---T-A-TAT-TT-TACAG----AAATA--TTTTTT-CCGC-G-----AGT-A-ATATTT-T-T-----CA-T--TTt
gi|18 : GTAATT-GTGCAATCAAAATGAA------CAATGT-T-AGTTCCA---T-AGGAT-TT-TACAG-----AGTA-TTTTTTT--CAT-G-----CGC-T-AT-TTT-TCT-----CA-T--TTT--CC-TTTAC-TCTT--T
gi|19 : AGGTA-TCACATC-GGTAATT-G----ACCAAAATGTACTTAGTCAATTG-T-AGTTCCA---A-A-TAT-TT-AACAG----AAATA-TTTTTAT-CCGT-G-----CGtt
gi|2 : CAGTTCA-GGTA-TCACAGG-GGTAATC-GTCCAATCAAAAT-----TAAT---TTG-C-AGTTC--------------------------AATA-TTTTTTT-CCCT-G-----TGT-G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT---------------------GTA--CCCTTGACC-AGGAAA-CTT---GTAAT-TTGTAGAAATA-ATCAGGGTGTTTACAAA
gi|22 : tctcagcagctTTCAAGGTAATC-CACCTGGTAATTTGTC-AATCAAAATGAACTTAGTCcatgaattcggatggtcactaagtcttgtttatgaaaaggaaatgttgtgtaaggcactgtttttccaatgtacatgtgttccctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgggatcatttcaacaaactgatttttcataattgttttcctatttggtaaaatttcgtaaaaaaataa
gi|3 : CAGTTCA-GGTA-TCACA---GGGAATC-GTCCAATCAAAAT---------TAATTG-C-AGTTC--------------------------AATA-TTTTTCC-CTGT-G---------G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT---------------------GTA--CCCTTGACC-AGGAAA-CT---TGTTAT-TTGTAGAAATA-ATCAGGGTGTTTACAAA
gi|4 : tctcagcagctTCAAAATGAACTCGGTTAATTG-T-AGCTCCA---T-A-TAT-AT-TACAG----AAAT--TGTTTTT-TCGT-G-----GGC-G-AT-TTT-T-TTTTTTCA-T--TTC--CC-CTAAT-TTTTGTCCC-T----TCTAAATTTTATA--CCCCCCATT-AGGAAA-TTTCATGTAAT-TTGCAGAAATA-catgaattcggatggtcactaaagtcttgtttatgaaaaggaaatgttgtgtaaagcactgttttttccaatgtacatgtgttcctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgatcatttcaacaaactgattttcataatgttttcc
gi|6 : TA-T-AGTTCCA---T-A-TAT-TTTAACA-----AAATA-TTTTTTTTCCGT-G-----CGC-G-AT-TTT-T-TT----CA-T--TTC--CC-CTCAT-CTTT--TTC-TTATTCTTAAATTTTGTAACCCCCCGATTGAGGAAAGTTTTATGTAAT-TTGCAGAAATA-CTC-TATTGTTTACAAnnnnnnnnnngcaacctagatacatccctatatttagactacttcctggggcgtccacaggctattacaaacacgtggttttgagggtagagctgttcgcggacaaatgctgtgtctgatgtcaatttttcctgatgcaggcagatgagacaggtaa
gi|7 : CACTTCAAGGTG-TCACACC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATATTTTTTTT-TCGT-G-----CGC-G-AT-TTT-T-T-----CC-T--TTC--CC-CTCAT-TTTT--TCTGT----CTTAAATTTCGTA--CCCCCAATG-AGGAAA-TTTTATGTAAT-TTACAGAAATG-CTC-AATTGTTTACAAAgggaaactattttctgtataagataagacgacttcctgggcgcccacaggctgtttacaaacacgaggaaaacacgggttttgagggtg
gi|8 : TA-T-AGTTCCA---T-A-TAT-TTTAACAG----AAATA-TTTTTT--CCGT-G-----CGC-G-AT-TTT-T-T-----CA-T--T-C--CC-CTCAT-CTTT--TTC-T----CTTAAAATTTGTA--CCGCCGATT-AGGAAAGTTGCATGTATTATTGCAGAAATA-CTC-TATTGTTTACAA
gi|9 : TG-T-AGTTCCA---TTA-TAT-TT-AACAGGAAAAAAAA-TTT-----CCGTTG-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-ATCAT-CTTT--TTC-T----CTTAAATTTT-TG--TCCCCGATT-AGGAAA-GTTGATGT-AT-TTGCAGAAATAGCTC-TATTGTTTACAAgcggaactattttctgtatagaataagacggcttcctggggcgccc
blockSeqs : A A CCT T C C C C AACC G G AACAGGAAAA T TC T . T C A C C TTTTTCA CA GT A C TTCTTATT AT CG AC G G TC A GC AG
blockSeqs : A . AT . C C . . TT G . TAACAGA . C . . . . . . . CTA CA . . . GTCCCT TT TT . . G TT . A AG
blockSeqs : A . AC . C C . . T . . AACAGA . C . . . . . . . CTA . . . . TCTGT AT TT . . . TT . A A
blockSeqs : A . CC . C C . . T . . AATAAA . C . . . . . . . TCA . . . . TTCT AT TC . . . GC . A T
blockSeqs : A . TC . C C . . T . . TACAGA . C . . . . . . . CA . . . . TCCA AT TT . . . TG . C A
blockSeqs : A . GG . C C . . T . . AACAGA . C . . . . . . . TC . . . . TCCT AA TT . . . T . C T
blockSeqs : . . CC . C . . . T . . TACAGA . C . . . . . . . CA . . . . TTCT AT . . . . . . C T
blockSeqs : . . . . . . . . A . . TAACAA . T . . . . . . . TT . . . . TTCT . . . . . .
blockSeqs : . . . . . . T . . AACAGA . T . . . . . . . CA . . . . . .
blockSeqs : . . . . . T . . TACAG . C . . . . . . . CA . . . . .
blockSeqs : . . . T . . TACAG . C . . . . . . . CC . . . .
blockSeqs : . . T . . AA . . . . . . . . . CA . . . .
blockSeqs : . . . . . . . . . . . . . . . TT .
blockSeqs : . . . . . . . . . .
blockSeqCons : T**** AACAGA***** ***** CN****** ** TTCT******* AT TT
originalCons : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTT--TCC-T----CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
finalCons : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCAT----A-TAT-TTAACAGA-----AATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-TCN------T--TTC--CC-CTCAT-TTTTTTCT-------CTTAAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTTTTTTTTCCACTTAAATTATCCTTTTCTTTAATTTTTGAACTCGCTGATTAGAAAATTTTCAGTTGTGAAATTTGTTACTATTGTAAATTAAAATCAGTTATTTAAACTGGAGCTATGAGATGTTGGTACCTGAGGCATCTTAGGATTTTTACTTACCATGTGAAAAACACATGGTTTTTGACTTTTGATGGTCTTGTTTATGGGGGAAAAGAGTTGTGTGGGTGTTGGTTTTCCAATGTCAAAGAAGAGATAGGTAACATGCAACATT
Unaligned ( gi|10 ): ATCACACTAGTAGGCTATTTACGCTCATGTGAAAAACGTAGTTTTGAGGGTAGTCCTGTTTGCAGGTAAACAAAAATTCCAAAAAGCCATGACAGATGTTGTTTTTCCTGTCAGCAGATGAGAGATACTTCC
Unaligned ( gi|14 ): AAAATGCATGTAAGGTGTCTTGTGTCGGTAGACGAGACAGGTAACATTGACCATTTCAACCGAACTCATTTCATCAAATCAATTTGTGGTTATCAATTACTTATTTCCTTTAAAATAA
Unaligned ( gi|20 ): GGCTACTTCCTGAGGTGAACCCAGGCTGTTGAAATACGTTGATTTGAGGGTAGTCTTATTTGCAGTCAAA
Unaligned ( gi|21 ): ATGCCGTGTCGGGTATCATTTTTCTGATACGGGCAGACGAGACAGGTAAC
Alignments
lowQualScore : 111 11111111111 11111111 11111111 11 11
lowQualScore : 1 4 111 3 3 00 4 2 2 77777 5 2 33333333333 2 44 2 66666 2 2 2 2 2 11111111 77 44 3 3 33 44444444 55 11 11 66 4 8 00 4 55 11
lowQualScore : . . ... . . .. . . . ..... . . ........... . .. . ..... . . . . . ........ .. .. . . .. ........ .. .. .. .. . . .. . .. ..
lowQualScore : 9 4 000 6 6 88 6 7 7 55555 3 7 00000000000 7 22 7 77777 9 9 9 9 9 99999999 99 22 1 1 55 66666666 00 66 33 11 4 9 88 4 44 00
consensus : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTTT-T--CT----CTT--AAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
Reference ( family-2270 ) : CAGTTCAAGGTA-TCACANC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATA-TTTTTTT-CCGT-G-----CGC-G-AT-TTT-T-T-----CN-T--TTC--CC-CTCAT-TTTTT-T--CT----CTT--AAATTTTGTA--CCCCCGATT-AGGAAA-TTTNATGTAAT-TTGCAGAAATA-NTC-NATTGTTTACAAA
gi|1 : TCAAAGTA-TCACAGT-GGTAAT---------------GAACTTGGTCAATTG-A-AGTTGCA-----A-TAT-TT-------------TT-TTTTTTT-TTTT-AGAAATCAT-G-AT-TTT-T--------C-T--TACGGCC-CCC-----TTT-T---------TT--A-----TGTC--CCCCTGATT-AGGAAA-TTTGGTGTAAT-TTGTAGAAATA-ATC-ACTTGTTCACAA
gi|11 : ATTGCT-AGTTCCA---T-A-TAT-TT-AACAG----AAAAA-AAAATTT-CCGT-G-----CGC-GCAT-TTT-T-T-----CA-T--TTC--CCACTCATCTTTTT-T--CT----CTT--AAgaggcaatatatgatgttggtaggcgctcagtctgcacacatgtgagaaacatgtgagttttaggggagtcttgttgtcaggtaattttgtttttcgaaaatggtgtgtagggtattgtttttccggtgtcagcagacgatacaggtaatgttgaacattcctatctgcattattcggcatcaatctgagttttggttattttttccctgtataataataattaccggtgcaataataa
gi|12 : AAGGTG-TCACAAT-GATAGTT-GTCCAATCAAATTGAACTTAGTCATTTG-T-TTTTCCAAACC-A-TATGTT-AATAA----A---------TTT-CCAT-G-----CAC-A-AT-TTTCT-T-----TC-T--TTC--GT-CTTTT-TTTTT-TTCCA----CTT--AAATTnnnnnnnnnnnnnnnnnnnnnnnnnacacaaagtttgtataatccac
gi|13 : taTTAAGGCA-TCAT------TAATT-GTT-GACCAA-------TTAGTCCATTT-C-AACTTCA---T-A-TAT-TT-AA-----------G-TTCTT--------G-----CGCTA-AT-CTT-T-T-----CA-T--TTC--CT-CTTAT-TCTGT-C--CT----CTT--AATTTCGGTA--CCCCTGATT-AGGAAA-T
gi|15 : TGTAAT-TTGCAGAAATA-ATC-AATTGTTTAC
gi|16 : ttCACGAC-GTTAATT-GTTCAATCAAAATGAA------CAA-CG-TCAGTTCCA---T-AGGAT-TT-TACAG-----AGTA-ATTTTTT--CAT-G-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-TTTAC-TCTTT-T--tgtagtttggttagacgacacctggggagcacacagactgtctacaagcacgtggaaaacgcgtggttttgag
gi|17 : AGGTA-TCAAACC-GGTAATT-GTCCAAT-AGAATGGACTTAGTCAATTG-T-AGTTCGA---T-A-TAT-TT-TACAG----AAATA--TTTTTT-CCGC-G-----AGT-A-ATATTT-T-T-----CA-T--TT
gi|18 : GTAATT-GTGCAATCAAAATGAA------CAATGT-T-AGTTCCA---T-AGGAT-TT-TACAG-----AGTA-TTTTTTT--CAT-G-----CGC-T-AT-TTT-TCT-----CA-T--TTT--CC-TTTAC-TCTTT-T--
gi|19 : AGGTA-TCACATC-GGTAATT-G----ACCAAAATGTACTTAGTCAATTG-T-AGTTCCA---A-A-TAT-TT-AACAG----AAATA-TTTTTAT-CCGT-G-----CGt
gi|2 : CAGTTCA-GGTA-TCACAGG-GGTAATC-GTCCAATCAAAAT-----TAAT---TTG-C-AGTTC--------------------------AATA-TTTTTTT-CCCT-G-----TGT-G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT-----------------------GTA--CCCTTGACC-AGGAAA-CT---TGTAAT-TTGTAGAAATA-ATCAGGGTGTTTACAAA
gi|22 : tctcagcagctTTCAAGGTAATC-CACCTGGTAATTTGTC-AATCAAAATGAACTTAGTCcatgaattcggatggtcactaagtcttgtttatgaaaaggaaatgttgtgtaaggcactgtttttccaatgtacatgtgttccctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgggatcatttcaacaaactgatttttcataattgttttcctatttggtaaaatttcgtaaaaaaataa
gi|3 : CAGTTCA-GGTA-TCACA---GGGAATC-GTCCAATCAAAAT---------TAATTG-C-AGTTC--------------------------AATA-TTTTTCC-CTGT-G---------G-AT-TTT-T-C-----CTAT--TTC--CC-CTTAT-TCTT-----------------------GTA--CCCTTGACC-AGGAAA-CT---TGTTAT-TTGTAGAAATA-ATCAGGGTGTTTACAAA
gi|4 : tctcagcagctTCAAAATGAACTCGGTTAATTG-T-AGCTCCA---T-A-TAT-AT-TACAG----AAAT--TGTTTTT-TCGT-G-----GGC-G-AT-TTT-T-TTTTTTCA-T--TTC--CC-CTAAT-TTTTG-T--CC----CTTCTAAATTTTATA--CCCCCCATT-AGGAAA-TTTCATGTAAT-TTGCAGAAATA-catgaattcggatggtcactaaagtcttgtttatgaaaaggaaatgttgtgtaaagcactgttttttccaatgtacatgtgttcctctgtcaatgagacaggtagcgtagaacatttcttaaattttctgctgtgtaatttgatcatttcaacaaactgattttcataatgttttcc
gi|6 : TA-T-AGTTCCA---T-A-TAT-TTTAACA-----AAATA-TTTTTTTTCCGT-G-----CGC-G-AT-TTT-T-TT----CA-T--TTC--CC-CTCAT-CTTTT-T--CTTATTCTT--AAATTTTGTAACCCCCCGATTGAGGAAAGTTTTATGTAAT-TTGCAGAAATA-CTC-TATTGTTTACAAnnnnnnnnnngcaacctagatacatccctatatttagactacttcctggggcgtccacaggctattacaaacacgtggttttgagggtagagctgttcgcggacaaatgctgtgtctgatgtcaatttttcctgatgcaggcagatgagacaggtaa
gi|7 : CACTTCAAGGTG-TCACACC-GGTAATT-GTCCAATCAAAATGAACTTAGTCAATTG-T-AGTTCCA---T-A-TAT-TT-AACAG----AAATATTTTTTTT-TCGT-G-----CGC-G-AT-TTT-T-T-----CC-T--TTC--CC-CTCAT-TTTTTCT--GT----CTT--AAATTTCGTA--CCCCCAATG-AGGAAA-TTTTATGTAAT-TTACAGAAATG-CTC-AATTGTTTACAAAgggaaactattttctgtataagataagacgacttcctgggcgcccacaggctgtttacaaacacgaggaaaacacgggttttgagggtg
gi|8 : TA-T-AGTTCCA---T-A-TAT-TTTAACAG----AAATA-TTTTTT--CCGT-G-----CGC-G-AT-TTT-T-T-----CA-T--T-C--CC-CTCAT-CTTTT-T--CT----CTT--AAAATTTGTA--CCGCCGATT-AGGAAAGTTGCATGTATTATTGCAGAAATA-CTC-TATTGTTTACAA
gi|9 : TG-T-AGTTCCA---TTA-TAT-TT-AACAGGAAAAAAAA-TTT-----CCGTTG-----CGC-G-AT-TTT-T-T-----TT-TCATTT--CC-ATCAT-CTTTT-T--CT----CTT--AAATTTT-TG--TCCCCGATT-AGGAAA-GTTGATGT-AT-TTGCAGAAATAGCTC-TATTGTTTACAAgcggaactattttctgtatagaataagacggcttcctggggcgccc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTTTTTTTTCCACTTAAATTATCCTTTTCTTTAATTTTTGAACTCGCTGATTAGAAAATTTTCAGTTGTGAAATTTGTTACTATTGTAAATTAAAATCAGTTATTTAAACTGGAGCTATGAGATGTTGGTACCTGAGGCATCTTAGGATTTTTACTTACCATGTGAAAAACACATGGTTTTTGACTTTTGATGGTCTTGTTTATGGGGGAAAAGAGTTGTGTGGGTGTTGGTTTTCCAATGTCAAAGAAGAGATAGGTAACATGCAACATT
Unaligned ( gi|10 ): ATCACACTAGTAGGCTATTTACGCTCATGTGAAAAACGTAGTTTTGAGGGTAGTCCTGTTTGCAGGTAAACAAAAATTCCAAAAAGCCATGACAGATGTTGTTTTTCCTGTCAGCAGATGAGAGATACTTCC
Unaligned ( gi|14 ): AAAATGCATGTAAGGTGTCTTGTGTCGGTAGACGAGACAGGTAACATTGACCATTTCAACCGAACTCATTTCATCAAATCAATTTGTGGTTATCAATTACTTATTTCCTTTAAAATAA
Unaligned ( gi|20 ): GGCTACTTCCTGAGGTGAACCCAGGCTGTTGAAATACGTTGATTTGAGGGTAGTCTTATTTGCAGTCAAA
Unaligned ( gi|21 ): ATGCCGTGTCGGGTATCATTTTTCTGATACGGGCAGACGAGACAGGTAAC