lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111111
lowQualScore : 33333333333 11 1 33333333333333333333 11 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 44 1111 1111 66666666666666666666666 111111111111111111111111111111111111 1 1 4
lowQualScore : 2 3 8 11111111111 5 00 1 77 11111111111111111111 3 3 44 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 77 5 4444 7777 11111111111111111111111 4 888888888888888888888888888888888888 5 7 0
lowQualScore : . . . ........... . .. . .. .................... . . .. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . .. . .... .... ....................... . .................................... . . .
lowQualScore : 0 0 0 77777777777 3 44 4 99 99999999999999999999 9 9 00 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 11 7 3333 9999 77777777777777777777777 2 555555555555555555555555555555555555 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTC-AGGA-TATCGGG--TA-------T--A--ATA----TATCGTCTGCTTT-ACGAGTTCGATCGAAAACA-G-CGGAA-AT--T----GA-------GAT---------TTACCA--AAG----TT--GA----ACTGCGTGATATGGGA---CACGAGGG----CGATNCA---TG------NTT---AAA-TGGTAC-----------TCCCGGTTG-AAT-TATA--TC--GTT-ATG-TGC---ATCATCTTTTAA-CCATT-GC-ACCTTTAATTTCGCGTCCAGTCCA-TT-AATTCC--GNTC-ATNACTC-T-ATCTG-ACCTGAACGCACAGCC--A--------TTTTGA-----ATT--TA---G------TGTT-T--T-----CATTNTTA--CGTA---CA----TGTATTCNT--GC--GCGTC--ACNTCA--AA--------------------AAC------------A-------------A----AA--CT-ATT-TGT-T-----T--TA-TTATT---ATT--------AAACATA-----ATTAAATGATAAGAAG-AAAT-TAATT----TCATAATTCTT--TTTNT-GATN--GC-GGTATCAAA-GAAAA----AA-CG---GA-AC--CAAA---------CTTA----------TAA---GCTTTG-A---------------CG-TCCAATTTT-TCCTTTGATA-CCGC---NAT---NAAAAGAA--AT-A--AATTANGATAATAAGATTTATTTC----T----TAA----TCCTT-TAAAA-TGCTCTCATCAAAGAATCT-GACT
Reference ( gi|1 ) : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTA-AGGA-TATCGGG--TA-------T--A--ATA----TATCGTTTACTTT-GCGAGTTCGATCGAAAA--------------------GA-------G-----------TTACTA--AAG----TT--GA----ACTGCGTGATATGGGACTCCACGAGGG----TGATTT----TG------TTT---AGA-TGATAC-----------TCCCGGTTG-AATACATACCTCATGTTCATGTTACCTAATCATCTTTTAA-C-ATT-GC-ACTTTTAATTTCGCGTCCAATTGA-TT-AATTCT--GATCAATTACTC-T-ATCTG-ACTTGAACGCACAGCC--A--------TTTAGA-----ATT--TA---G------TGTT-T--T-----CATTGTTA--CGTA---CA----TGTATTCGT--AT--GCGTC--ACCTTA--AA--------------------AAC------------A-------------A----AA--CT-ATT-TGT-T-----T--TA-TTATT---AT---------GAACATA-----ATCAAATGATAAGAAG-AAAT-TAATT----TTGTAATTCTT--TCTTT-GATC--GC-GGTATCAAA-GAAGA----AA-TG---GA-AT-TCAAA---------CTTA---------GTAA---GTTTTG-A---------------CG-TCCAATTTT-T--TTTGATA-CCGC---GAT---AAAAAGAA--AT-AGGAA--AAAATTACAAGATTCATTTC----G----TAA----TTCTTATAAAAGTG-TCGC-TCACAGATTCTCGACTAT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTC-AGGA-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGCTTT-ACGAGTTCGATCGAAAACAGGACGGAACATGATCTTCGA-------GATA--------TTACTG--AAG----TT--GA----ACTGCGTTATATGGGGCACAACGAGGG----CGATGTACA-TGATGCGATTT---AGA-TGATACTCAAATGGTGTTCCCGGTTA-AATATATATCTCATG---ATG-TGC--AATCATCTTTTAACC-ATT-GC-AC-TTGAATTTCGCGTCCAGTCCATTT-AATTCT--GCTCACTAAATC-T-ATTTG-ACATGAATGCACAGCC--A--------TTTTGA-----ATT--CA---G------TGTTGT--TGTTTACATT-TTA--CGTG---CA----TGTATTCAT--GC--GCGTC--ACTTAA--AA--------------------AAC------------C-------------C----A----C-ATT-TAT-TAAAGAT--TA-T--TT---AT---------GA
gi|4 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTA-AGGA-TATCGGG--TA-------T--A--ATA----TATCGTTTACTTT-GCGAGTTCGATCGgagaa
gi|3 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATC-AGGA-TAATGGG--TA-------T--ACAATT----TATCGTCTGCTTT-ACGAGTTCGATCG
gi|11 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTAGTGATTACACCAGGT------ATACACGAGTTTTC-CGGAATATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTTACGAGTTCGATCG
gi|6 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatGACAC-AGGT------ATACACGAGTT-TACAGGA-TATCGGAAATA-------T--C--ATA----TATCGTCTGCTCT-ACGTGTTCGGTAAAAAA--------------------AA-------AATGACGGAACATTACCA--A-G----TT--GA----ACTGTGCG----GGGA---CACGTGG----------C----TA------TCT---AAATTGGTAC-----------TCATAGCTG-AAT------------TTCG--------------CTTCCAA-A-ATT-----CTTTTAATGTTGC-TC------A-TT-AACCC--------------C-T-GTCTT-ATTTGAACTCCCAGTC--AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT-T--T-----CATTTTTA--CGTA---CA----TGTATCCAT--AA--GCGTC--ACTTCA--AA--------------------AAC------------AT------------T----AA--TTAAAT-TGTAT-----T--TA-TTA
gi|16 : T-----TATATGCGAGTTCCA-AGGA-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGCTTT-ACGATTTCGATCGAAAAT-------------------AA-------G-----------TGACGA--AGC----TT--GA----TCTTCGAGATAgagaaacta
gi|9 : tacgtagATACACGAGTTTTC-CGGAATATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTTACGAGTTCGATCGAAAA--------------------GAAATGAACG-----------TT-CCAGCAAGATCCTTCGGAGATGACTCCGTGGTATGGGA--ACACAAGAG----CCATTTAGCATG------GTTCTCAAA-CGGTAC-----------TCTCGTTTGTAAT-TATAAATC--GTTGATA-TAC---AT-----------C-ATT-GCTACTTTC-ATTTCGCGGCCAATCCA-TTCAGTTAT--TATC-ATAACTCTT-TTCTG-ACGTATCCACACAGCCAAA--------TTT-GA-----CTT--TA---A------TGAT-TGGT-----TATTTTTa
gi|17 : TTT-ACGAGTTTGATCGAAAACATGCCGGAATATTTTG---GAT------A-----------TTACTA--AAG----TT--GA----ACTGTGTAATATGGGA---CACGAGGGCGGATGATAC----TA------ATT-------TGGTAC-----------TCCC
gi|7 : TCATATTTTAA-CCATA-GC-ACCTTTAATT--------AGTTG--------TCC--AGTCCATT--TC---AT-TC-ACCTGAACGCATAGCC--A--------TTTGGATATATATTAATA---T------TGTT-T--T-----CATTGTTA--CGTT---CT----TGTATCCCT--GT--GCGTC--ATATCA--AACACGTTAGTTAAAGCTTTTCAAT------------A-------------AGAGAAA--CT-TTT-TGT-T-----T--TA-CTATTTTTATTCAAGAGAAAAACATA-----ATTAAAGGATAAGAAATAAATCTTATTA---TCATAATTATT--TTCTT-CATG--GC-GGTATCAAA-GGAAA----AA-CT---GA-AC-GCAAA---------
gi|8 : aatTCATATTTTAA-CCAT---C-ACCTTTAATT--------AGTTG--------TCC--AGTCCATT--TC---AT-TC-ACCTGAACGCATAGCC--A--------TTTGGATATATATTAATA---T------TGTT-T--T-----CATTGTTA--CGTT---CT----TGTATCCCT--GT--GCGTC--ATATCA--AACACGTTAGTTAAAGCTTTTCAAT------------AAGAG---------A----AA--CT-TTTGTGT-T-----TACTA-TTTTT---ATTCAAGAGA-AAACATA-----ATTAAAGGATAAGAAATAAATCTTATTA---TCATAATTATT--TTCTT-CATG--GC-GGTATCAAA-GGAAA----AA-CT---GA-AC-GCAAA---------gcattttccatcaattc
gi|5 : atCATCTTTTAA-CCATT-GT-ACCTTTAGTTTCGCGTCCAGTTCATTT-GATTGT--GCT-GGTAACTC-T-ACCGG-ACCTGAACGCATACCT--A--------TTTTGA-----ATT--AA---GTGTTGTTGTT-T--T-----AATTCTTA--CATACTGCA----TGCACTCTC--AC--GCGTC--A-CTTC--AA--------------------AACATTAATT-----A-------------A----AG--CT--TA-TGT-T-----T--TA---------GT---------GAAAATGTTTCTTTC--ATTATTTAAA--------AACT----TT-----TCTT--TTTAT-CATC--GT-GGTATCAAAGGAAAA----AA-TG---GA-----CGAAGTTTTTTGTTTTATCAATGCGCATAA---GTTTTT-C---------------CA-TCCAAGTTT-TCATTTGATA-CCAC---TATC--AAAAAAAA--GT-A--CA--AGAAT-----GATTAATTTC----T----TAgcattttccatcaattcgc
gi|18 : CATCCTTTAG-TGATTAGC--CCTTTAATTTAGCGTCCAATTCA-T------------TTAATTA--C-C-ACCTG-ACCTGAACG--CAACC--A--------TTTTGA-----ATG--TACCGG------TAGT-T--T-----TATT
gi|14 : GTCCAATCCA-TTTAATTCTCAGA------ACTC-TTATTGGGACGTGAACGCAGTGCC--A--------TTTTAA-----A-T--TG---G------TGTT-G--TGG---TATT-TTAATCATA---CAATATTGCATTCATCGATCCACTTCAAACATTAATAA--------------------AATGATATATACAGAA-------------A----AA--CT-ATC-TG--T-----T--TG-TTATT---Attgtat
gi|21 : atgCTC-T-ACCAG-ACCTGAATGCACAGCC--A--------TTTTGA-----ATT--TA---G--------------------CATTGTTatacttt
gi|13 : A---CG----TGTATTCCT--AC--GCGTC--A-TTTC--AA--------------------AAC------------G-------------T----AA--CT-ATT-TGA-T-----T--TAGTTTTT---TTCA-------AAACATA-----ACTAAATG-------G-AAAT-AGA------TCATAAATCTT--TTTTG-GATG--AT-GGCATTGAT-GAAG----------------------------------TTA-----------------TT--------------------CG-TTCAATTTTCC--TTTGATA-CGGC---CAT---CAAAAG----ATCAAGAA--AAt
gi|10 : ttcactacA----TGTATTCGT--GC--GTGTC--ACTTAG--AA--------------------AAC------------ATTAATTTACTGAGA----GATGCT-GTC-TGT-T-----T--TA-TTATTC--AA---------AAACATA-----ATTAAAT-------------------C----TTATAGTTCTT--TTTGT-GATC--GC-GGTATCAAA-GAAAA----AATTG---GACATATAAAA---------C-------------------GATTT--A---------------CGTTTCAATTTT-TTCTTTGATAGGAGC---GAT---CACAA-----------AA--AGAATTATAAGATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACT
gi|5 : ttaaatttttttttttttttttttacttctttAAG-AAAT-TAATCATTCTTGTACTTTTT--T--TT-GATA--GT-GGTATCAAATGAAAACTTGGA-TG---GA-A----AAA---------CTTA----------TGC---GCATTG-ATAAAACAAAAAACTTCG-TCCATTTTT-TCCTTTGATA-CCACGATGAT---AAAAAGAA--Attg
gi|22 : catcttttaaccattgtacctttagtttcgcgtccagttcatttgattgtgctggtaactctaccggacctgaacgcatacctattttgaattaagtgttgttgttttaattcttacatactgcatgcactctcacgcgtcacttcaaaacattaattaaagcttatgttttagtgaaaatgtttctttcattatttaaaaactAAG-AAAT-TAATT----TCATAATTCTT--TTTAT-GATC--GC-GGAATCAAA-GAa
gi|10 : AG-AAAC-GAATC----TTATAATTCTT--TTTGT-GATC--GCTCCTATCAAA-GAAAA----AA-TT---G-------AAA---------C------------GTAAATCGTTTTATA---------------TG-TCCAATTTT-TTCTTTGATA-CCGC---GATCACAAAAAGAACTAT-AAGA
gi|20 : ttaaatttttttttttttttttttacttctttatgtattcgtgcgtgtcacttagaaaacattaatttactgagagatgctgtctgttttattattcaaaaacataattaaaAATT----TTATAATTGTT--TTTGT-GATTTTGC-GGTATCAAA-GAAAA----AA-ctagaattcaaacgtttcgtataaaatgctctcatcaaagaatctgactttg
gi|13 : taatgaTTCTTGATCTTTTGATG--GC-CGTATCAAA-GGAAA----AT-TGAACGA-AT----AA---------CTT
gi|7 : ttcactacacgtgtattcctacgcgtcatttcaaaacgtaactatttgatttagtttttttcaaaacataactaaatggaaatagatcataaatcttttttggatgatggcattgatg---GCTTTG-----------------CG-TTCAGTTTT-TCCTTTGATA-CCGC---CAT---GAAGA-AA--AT----AATTATGATAATAAGATTTATTTC----T----T-A----TCCTT-TAAaa
gi|8 : aattcatattttaaccatagcacctttaattagttgtccagtccatttcattcacctgaacgcatagccatttggatatatattaatattgttttcattgttacgttcttgtatccctgtgcgtcatatcaaacacgttagttaaagcttttcaataagagaaactttttgttttactatttttattcaagagaaaaacataa---GCTTTG-----------------CG-TTCAGTTTT-TCCTTTGATA-CCGC---CAT---GAAGA-AA--AT----AATTATGATAATAAGATTTATTTC----T----T-A----TCCTT-TAAattttccatcaattc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111 111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111
lowQualScore : 222222 22222222222222222222 4444444444444444444444444444444444444444 222 000000000000000000000000000000000000 111 1 999999999999999999999999999 666666666666666666 111111111 11111111 2222222222222222222222 11111 1111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333 111 333333333333333333333 22222222222 111 9999999999999999999999999999999999999999999 1 1 77777777777777777 222 000000000000 2 1 1 2
lowQualScore : 6 4 222222 0 5 5 66 22222222222222222222 4 4 1111111111111111111111111111111111111111 6 0 3 8 888 0 888888888888888888888888888888888888 222 0 555555555555555555555555555 2 7 55 3 1 8 444444444444444444 333333333 0 4 44444444 6666666666666666666666 3 55 00000 4 4 66 7777777777777 1 2 1 000000000000000000000000000000000000000000000000000000000000000000000000000000 111 000000000000000000000 33333333333 1 777 5 000 7777777777777777777777777777777777777777777 0 9 99 0 2 1 1 00000000000000000 7 9 333 6 222222222222 0 5 3 5 3 4 0
lowQualScore : . . ...... . . . .. .................... . . ........................................ . . . . ... . .................................... ... . ........................... . . .. . . . .................. ......... . . ........ ...................... . .. ..... . . .. ............. . . . .............................................................................. ... ..................... ........... . ... . ... ........................................... . . .. . . . . ................. . . ... . ............ . . . . . . .
lowQualScore : 7 0 777777 5 0 0 99 22222222222222222222 4 4 4444444444444444444444444444444444444444 8 8 8 0 000 8 888888888888888888888888888888888888 222 0 000000000000000000000000000 5 6 44 4 4 9 888888888888888888 444444444 7 0 55555555 5555555555555555555555 6 00 00000 0 9 99 3333333333333 0 7 0 666666666666666666666666666666666666666666666666666666666666666666666666666666 777 555555555555555555555 88888888888 0 999 0 444 5555555555555555555555555555555555555555555 0 2 00 0 5 0 0 99999999999999999 3 7 333 0 000000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAACA-G--C-GAACA------T----T-----GA--GA--TATTACCGAAGTTGAACTGCGTGATATGGGA-C-C-ACGAGGGCGA--TT---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AATATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-AATT-T--TC-A-TAACTC-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT-T--T-----CAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCACTTCAAA--------------------AACA--A----------AAA--CT-NTT-TGT-TT--TATTA---TTATTCA------AAA---CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATT-----------CTTTTTNTGATC--GCGGTATCAAA-GAAAAAA-CGGA----------------A-C-CAA-ACTTA-TAA---GTTTT-ACG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAA--A--AA-TA-AA--ATAAGATTCGTTTCTT---AATTCAAACGTTNCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAACA-G--CGGAA-A------T----T-----GA--GA--T-TTACCAAAGTTGAACTGCGTGATATGGGA-C---ACGAGGGCGA--TN---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-TATA--TC----GTT-ATGT-GC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-AATTCCGNTC-A-TNACTC-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT-T--T-----CAT-TNTTA--CGTA---C---A----TGTATTCNTGCGCGTCACNTCAAA--------------------AACA-------------AAA--CT-ATT-TGT-TT--TATTA---TTATT--------AAA---CATAATTAAATGATAAGAAG-AAAT-TAATT-TCATAATT-----------CTTTTTNTGATN--GCGGTATCAAA-GAAAAAA-CGGA----------------A-C-CAA-ACTTA-TAA---GCTTTGACG-TCCAATTTTTCCTTTGATA-CCGCNATNAAAAGAAATA--AATTANGATAATAAGATTTATTTCTT---AATCC-----TT-----TAAAA-TGCTCTCATCAAAGAATCT-GACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCGAAAA------------------------------GA--G-----TTACTAAAGTTGAACTGCGTGATATGGGA-CTCCACGAGGGTGA--TT---T-TG-----------------TT--T---AG-A-TGATACTCCCGGTTG-AATACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAA-CATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-AATTCTGATCAA-TTACTC-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT-T--T-----CAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCACCTTAAA--------------------AACA-------------AAA--CT-ATT-TGT-TT--TATTA---TTA-T--------GAA---CATAATCAAATGATAAGAAG-AAAT-TAATT-TTGTAATT-----------CTTTCTTTGATC--GCGGTATCAAA-GAAGAAA-TGGA----------------ATT-CAA-ACTTAGTAA---GTTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA--AAAATTACAAGATTCATTTCGT---AATTC-----TTA----TAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT-T--T-----TTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCACTTAGAA--------------------AACATTAATTTACTGAGAGATGCT-GTC-TGT-TT--TATTA---TTCAA--------AAA---CATAATTAAAT-------------------C-TTATAGTT-----------CTTTTTGTGATC--GCGGTATCAAA-GAAAAAATTGGA--------------------CA-----TA-TAAAACGATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAA--G--AATT------ATAAGATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCATTTC-AA--------------------AACG-------------TAA--CT-ATT-TGA-TT--TAGTT---TTTTTCA------AAA---CATAACTAAATG-------G-AAAT-AGA---TCATAAAT-----------CTTTTTTGGATG--ATGGCATTGAT-GAAG----------------------------------TTA-T-------T----CG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGA
gi|14 : ttcactacGTCCAATCCA-TTTAATTC---TC-A-GAACTC-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT-G--T-----GGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCACTTCAAACATT----------------AATA-------------AAA--tcaagaaaa
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGC-TTT-ACGATTTCGATCGAAAATA-tgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAACATG--CCGGA-A------TATTTT-----G---GA--TATTACTAAAGTTGAACTGTGTAATATGGGA-C---ACGAGGGCGG--------ATG-----------------ATACT---AATT-TGGTACTCCCagtgacgaagcttgatcttcgagataa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT---------TA-A-TTA--C-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT-T--T-----TAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGC-TTT-ACGAGTTCGATCGAAAACA-GGACGGAACATGATCTT----C-----GA--GA--TATTACTGAAGTTGAACTGCGTTATATGGGG-CACAACGAGGGCGATGTA---CATGATGCGATTTAGATGATACT--C---AA-A-TGGTGTTCCCGGTTA-AATATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-AATTCTGCTC-ACTAAATC-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGT--TGTTTACAT-T-TTA--CGTG---C---A----TGTATTCATGCGCGTCACTTAAAA--------------------AACgtat
gi|20 : AATT-TTATAATT-----------GTTTTTGTGATTTTGCGGTATCAAA-GAAAAAA-ccacatttattaaagattatttatgagagaa
gi|21 : taatgaCTC-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT-T--
gi|22 : AAG-AAAT-TAATT-TCATAATT-----------CTTTTTATGATC--GCGGAATCAAA-GA
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGG--TA-------T--ACAATT----TATCGTCTGC-TTT-ACGAGTTCGATCG
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-GATTGTGCTG-G-TAACTC-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT-T--T-----AAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCACTTCAAA--------------------A------------------------------------CATTA-----ATT--------AAAGCTTATGTTTTAGT-----GAAA-ATGT-TTCTT-TCATTATTTAAAAACTTTTCTTTTTATCATC--GTGGTATCAAAGGAAAAAA-TGGACGAAGTTTTTTGTTTTA-T-CAATGCGCA-TAA---GTTTTTCCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAAA----A--AAGTACAAGAAT--GATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAATA-------T--C--ATA----TATCGTCTGC-TCT-ACGTGTTCGGTAAAAAA---------AA-A------A----T-----GACGGAACA-TTACC-AAGTTGAACTGTGCG----GGGA-C---ACG-TGGCTA--TC----------------------------T---AA-ATTGGTACTCATAGCTG-AAT-T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-AAC-------------CCC-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT-T--T-----CAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCACTTCAAA--------------------AACAT------------TAA--TTAAAT-TGTATT--TATTA---
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT---------TC-A-T---TC---------ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT-T--T-----CAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAATAAGAG---------AAA--CT-TTT-TGT-TT--TACTATTTTTATTCAAGAGAAAAA---CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATT-----------ATTTTCTTCATG--GCGGTATCAAA-GGAAAAA-CTGA----------------A-CGCAA-Agagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT---------TC-A-T---TC---------ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT-T--T-----CAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAATAAGAG---------AAA--CT-TTTGTGT-TTACTATTT---TTATTCAAGAGA-AAA---CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATT-----------ATTTTCTTCATG--GCGGTATCAAA-GGAAAAA-CTGA----------------A-CGCAA-Agcattttccatcaattc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGG--TA-------T--A--TTAATTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGA-A--ATGAACG------T----TCCAGCAA--GA--T-CCTTCGGAGATGA-CTCCGTGGTATGGGAAC---ACAAGAGCCA--TTTAGCATG-----------------GT--TCTCAA-A-CGGTACTCTCGTTTGTAAT-TATAAATC----GTTGATAT-AC---ATCAT-----------T-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATTATC-A-TAACTCTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT-TGGT-----TAT-TTTTgcattttccatcaattcgc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 222222 22222222222222222222 111111111111111111111111111 222222 00000000000000000000000000000000000 111 1 7777777777777777777777777777 6666666666666666666666 11111111 2222222222222222222222 1111111111111 888888888888888888888888888888888888888888888888888 11 5555555555555555555555555555555555 3333333333333333333333 111 999999999999999999999999999999 111 1 11 1 1 3333333333333333 1 222 4444444444 1 1 1 1
lowQualScore : 6 4 222222 0 5 5 66 22222222222222222222 4 4 222222222222222222222222222 3 0 0 0 6 0 3 888888 0 88888888888888888888888888888888888 222 0 7777777777777777777777777777 2 77 55 3 1 8 9999999999999999999999 4 555 999 0 4 44444444 6666666666666666666666 7777 55 1 8 66 7777777777777 1 2 555555555555555555555555555555555555555555555555555 77 22 5 5 77 6666666666666666666666666666666666 3333333333333333333333 2 1 888 5 0 000 000000000000000000000000000000 777 0 33 0 9 99 0 2 1 6 4444444444444444 3 0 333 6666666666 5 5 1 5 1 1 5
lowQualScore : . . ...... . . . .. .................... . . ........................... . . . . . . . ...... . ................................... ... . ............................ . .. .. . . . ...................... . ... ... . . ........ ...................... .... .. . . .. ............. . . ................................................... .. .. . . .. .................................. ...................... . . ... . . ... .............................. ... . .. . . .. . . . . ................ . . ... .......... . . . . . . .
lowQualScore : 7 0 777777 5 0 0 99 22222222222222222222 4 4 000000000000000000000000000 8 8 6 8 4 8 8 000000 8 88888888888888888888888888888888888 222 0 5555555555555555555555555555 5 00 44 4 4 9 6666666666666666666666 0 333 777 7 0 55555555 5555555555555555555555 7777 00 4 0 99 3333333333333 0 7 555555555555555555555555555555555555555555555555555 33 33 7 7 99 4444444444444444444444444444444444 0000000000000000000000 2 0 222 0 9 444 888888888888888888888888888888 555 0 55 0 2 00 0 5 0 5 1111111111111111 3 7 333 0000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA-G--C--GAACG------TC-----GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTA---TTATTC------AA-----AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAA-GAAAAAA-CGGA----------------A-C-CAA-AC-TA-TAA---G-TTTT-NCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAACA-G--C--GAACA------TT-----GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---TTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTA---TTATTC------AA-----AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAA-GAAAAAA-CGGA----------------A-C-CAA-ACTTA-TAA---G-TTTT-ACG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTNCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCGAAAA---------------------------GAG---TTACTAAAGTTGAACTGCGTGATATGGG--ACTCCACGAGGGTGAT-T---T-TG-----------------TT--T---AG-A-TGATACTCCCGGTTG-AAT-ACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAAC-ATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-A---ATT---CTGA-TCAATTACT-C-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT----T--TCAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCAC-----------------------CTTAAA----AAC--------------AAA-ACT-ATT-TGT-TT--TATTA---TTAT---------G-----AA---------CATAATCAAATGATAAGAAG-AAAT-TAATT-TTGTAATTCTTTCTTTGATC--GCGGTATCAAA-GAAGAAA-TGGA----------------ATT-CAA-ACTTAGTAA---G-TTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA-AAAATTACAA-GATTCATTTCGT---AATTC-----T----TATAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT----T--TTTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCAC-----------------------TTAGAA----AACATTAATTTACTGAGAGATGCT-GTC-TGT-TT--TATTA---TT---C------AA-----AAA--------CATAATTAAAT-------------------C-TTATAGTTCTTTTTGTGATC--GCGGTATCAAA-GAAAAAATTGGA--------------------CA-----TA-TAAAACG-ATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAAG----AAT--TAT---AA-GATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCAT-----------------------TTCAAA----A-CG-------------TAA--CT-ATT-TGA-TT--TAGTT---TTTTTC------AA-----AA---------CATAACTAAATG-------G-AAAT-AGA---TCATAAATCTTTTTTGGATG--ATGGCATTGAT-G------------------------------------------AA---G-TTAT-TCG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGATC----AAGAAAA
gi|14 : ttcactacGTCCAATCCA-TTTA---ATT---CTCA-G--A--ACT-C-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT----G--TGGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCAC-----------------------TTCAAACATTAATA-------------AAA-
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGC-TTT-ACGATTTCGATCGAAAATA-tgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAACATG--CCGGAATA------TTTT---G-GATATTACTAAAGTTGAACTGTGTAATATGGG--A---CACGAGGGCGG-------ATG-----------------ATACT---AATT-TGGTACTCCCagtgacgaagcttgatcttcgagataa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT----------------T--A--ATTAC-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT----T--TTAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGC-TTT-ACGAGTTCGATCGAAAACA-GGACG-GAACATGATCTTC-----GAGATATTACTGAAGTTGAACTGCGTTATATGGGGCAC--AACGAGGGCGATGTA--CATGATGCGATTTAGATGATACT--C---AA-A-TGGTGTTCCCGGTTA-AAT-ATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-A---ATTCTGCTCACT--A--AAT-C-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGTTGT--TTACATTTTA--CGTG---C---A----TGTATTCATGCGCGTCAC-----------------------TTAAAA----AACgtat
gi|20 : ATT-TTATAATTGTTTTTGTGATTTTGCGGTATCAAA-GAAAAAA-ccacatttattaaagattatttatgagagaa
gi|21 : taatgaaCT-C-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT----T--
gi|22 : AAG-AAAT-TAATT-TCATAATTCTTTTTATGATC--GCGGAATCAAA-GA
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGG--TA-------T--ACAATT----TATCGTCTGC-TTT-ACGAGTTCGATCG
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-G---ATTGTGCTGG-T--A--ACT-C-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT----T--TAAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCAC-----------------------TTC-AA----AACATTAATT-------AAA-GCT--TA-TGT-TT--TAGTG---------------AA-----AATGTTTCTTTCATTATT------TAA-----AAAC-T--TT-T-------CTTTTTATCATC--GTGGTATCAAAGGAAAAAA-TGGACGAAGTTTTTTGTTTTA-T-CAATGCGCA-TAA---GTTTTT-CCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAA-AAA----AGTACAAG---AATGATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAATA-------T--C--ATA----TATCGTCTGC-TCT-ACGTGTTCGGTAAAAAAAA--------AATG------AC-----GGAACATTACC-AAGTTGAACTGTGCG----GGG--A---CACG-TGGCTAT---------------------------C--T---AA-ATTGGTACTCATAGCTG-AAT--T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-A---AC----------------CC-C-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCAC-----------------------TTCAAA----AACA-------------TTA-ATTAAAT-TGTATT--TATTA---
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTT-TGT-TT--TACTATTTTTATTCAAGAGAAA-----AA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAA-GGAAAAA-CTGA----------------A-CGCAA-Agagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTTGTGT-TTACTATTT---TTATTC------AAGAGAAAA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAA-GGAAAAA-CTGA----------------A-CGCAA-Agcattttccatcaattc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGG--TA-------T--A--TTAATTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGA-AA-T--GAACG------TTCCAGCAAGATCCT-TCGGAGATGA-CTCCGTGGTATGGG--AA--CACAAGAGCCAT-TTAGCATG-----------------GT--TCTCAA-A-CGGTACTCTCGTTTGTAATTATAAA--TC----GTTGATAT-AC---ATCAT-----------T-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATT---ATCA-T--A--ACT-CTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT----TGGTTAT-TTTTgcattttccatcaattcgc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 111111111111111111111111111111111111111 11111111111111111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 222222 22222222222222222222 111111111111111111111111111111111111111 222222 00000000000000000000000000000000000 111 1 7777777777777777777777777777 6666666666666666666666 11111111 2222222222222222222222 1111111111111 8888888888888888888888888888888888888888888888888888888888888888888888 11 6666666666666666666666666666666 3333333333333333333333 111 222222222222222222222222222222222222222 1 1 3333333333333333 1 222 4444444444 1 1 1 1
lowQualScore : 6 4 222222 0 5 5 66 22222222222222222222 4 4 1 888888888888888888888888888888888888888 0 6 0 3 888888 0 88888888888888888888888888888888888 222 0 7777777777777777777777777777 2 77 55 3 1 8 2222222222222222222222 4 555 999 0 4 44444444 6666666666666666666666 7777 55 1 8 66 7777777777777 1 2 6666666666666666666666666666666666666666666666666666666666666666666666 77 22 5 5 77 0 3333333333333333333333333333333 3333333333333333333333 2 1 888 5 0 000 000000000000000000000000000000000000000 77 6 2 3 99 0 2 1 6 4444444444444444 3 0 333 1111111111 5 5 1 5 1 1 5
lowQualScore : . . ...... . . . .. .................... . . . ....................................... . . . . ...... . ................................... ... . ............................ . .. .. . . . ...................... . ... ... . . ........ ...................... .... .. . . .. ............. . . ...................................................................... .. .. . . .. . ............................... ...................... . . ... . . ... ....................................... .. . . . .. . . . . ................ . . ... .......... . . . . . . .
lowQualScore : 7 0 777777 5 0 0 99 22222222222222222222 4 4 0 222222222222222222222222222222222222222 8 4 8 8 000000 8 88888888888888888888888888888888888 222 0 5555555555555555555555555555 5 00 44 4 4 9 2222222222222222222222 0 333 777 7 0 55555555 5555555555555555555555 7777 00 4 0 99 3333333333333 0 7 3333333333333333333333333333333333333333333333333333333333333333333333 33 33 7 7 99 6 3333333333333333333333333333333 0000000000000000000000 2 0 222 0 9 444 000000000000000000000000000000000000000 77 7 0 2 00 0 5 0 5 1111111111111111 3 7 333 0000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA----G--C--GAA-------CG------T-----C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA--------------------AACA-------------A---AA-ACT-NTT-TGT-TT--TATTATT---ATTC-----AA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAA-GAAAAAA-CGGA----------------A-C-CAA-A--C--ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA----G--C--GAA-------CG------T-----C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA--------------------AACA-------------A---AA-ACT-NTT-TGT-TT--TATTATT---ATTC-----AA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAA-GAAAAAA-CGGA----------------A-C-CAA-AC-T--ATAA---G-TTTT-NCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCGAAAAGA----G--------------------------------------TTACTAAAGTTGAACTGCGTGATATGGG--ACTCCACGAGGGTGAT-T---T-TG-----------------TT--T---AG-A-TGATACTCCCGGTTG-AAT-ACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAAC-ATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-A---ATT---CTGA-TCAATTACT-C-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT----T--TCAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCAC-----------------------CTTAAA--------------------AAC--------------A---AA-ACT-ATT-TGT-TT--TATTATT---AT--------G------AA---------CATAATCAAATGATAAGAAG-AAAT-TAATT-TTGTAATTCTTTCTTTGATC--GCGGTATCAAA-GAAGAAA-TGGA----------------ATT-CAA-AC-TTAGTAA---G-TTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA-AAAATTACAA-GATTCATTTCGT---AATTC-----T----TATAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT----T--TTTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCAC-----------------------TTAGAA--------------------AACATTAATTTACTGAGA---GATGCT-GTC-TGT-TT--TATTATT------C-----AA------AAA--------CATAATTAAAT-------------------C-TTATAGTTCTTTTTGTGATC--GCGGTATCAAA-GAAAAAATTGGA--------------------CA-----T--ATAAAACG-ATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAAG----AAT--TAT---AA-GATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCAT-----------------------TTCAAA--------------------A-CG-------------T---AA--CT-ATT-TGA-TT--TAGTTTT---TTTC-----AA------AA---------CATAACTAAATG-------G-AAAT-AGA---TCATAAATCTTTTTTGGATG--ATGGCATTGAT-G-------------------------------------------AA---G-TTAT-TCG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGATC----AAGAAAA
gi|14 : ttcactacGTCCAATCCA-TTTA---ATT---CTCA-G--A--ACT-C-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT----G--TGGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCAC-----------------------TTCAAACATT----------------AATA-------------A---AA-
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGC-TTT-ACGATTTCGATCGAAAATAAGTGA--C--GAAGCTTGATCT------T-----C--GAGATAtgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAACAT---G--CCGGAA-------TA------T-----TTTG-GATATTACTAAAGTTGAACTGTGTAATATGGG--A---CACGAGGGCGG-------ATG-----------------ATACT---AATT-TGGTACTCCCa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT----------------T--A--ATTAC-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT----T--TTAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGC-TTT-ACGAGTTCGATCGAAAACA----GGACG-GAA-------CATGATCTT-----C--GAGATATTACTGAAGTTGAACTGCGTTATATGGGGCAC--AACGAGGGCGATGTA--CATGATGCGATTTAGATGATACT--C---AA-A-TGGTGTTCCCGGTTA-AAT-ATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-A---ATTCTGCTCACT--A--AAT-C-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGTTGT--TTACATTTTA--CGTG---C---A----TGTATTCATGCGCGTCAC-----------------------TTAAAA--------------------AACgtat
gi|20 : ATT-TTATAATTGTTTTTGTGATTTTGCGGTATCAAA-GAAAAAA-ccacatttattaaagattatttatgagagaa
gi|21 : taatgaaCT-C-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT----T--
gi|22 : AAG-AAAT-TAATT-TCATAATTCTTTTTATGATC--GCGGAATCAAA-GA
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGG--TA-------T--ACAATT----TATCGTCTGC-TTT-ACGAGTTCGATCG
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-G---ATTGTGCTGG-T--A--ACT-C-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT----T--TAAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCAC-----------------------TTC-AA--------------------AACATTAATT-------A---AA-GCT--TA-TGT-TT--TAGTG--------------AA------AATGTTTCTTTCATTATT------TAA-----AAAC-T--TT-T-------CTTTTTATCATC--GTGGTATCAAAGGAAAAAA-TGGACGAAGTTTTTTGTTTTA-T-CAATGCGC--ATAA---GTTTTT-CCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAA-AAA----AGTACAAG---AATGATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAATA-------T--C--ATA----TATCGTCTGC-TCT-ACGTGTTCGGTAAAAAAAA-----------AA-------TG------A-----C--GGAACATTACC-AAGTTGAACTGTGCG----GGG--A---CACG-TGGCTAT---------------------------C--T---AA-ATTGGTACTCATAGCTG-AAT--T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-A---AC----------------CC-C-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCAC-----------------------TTCAAA--------------------AACA-------------T---TA-ATTAAAT-TGTATT--TATTA
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT--------------------AAGA-------------G---AA-ACT-TTT-TGT-TT--TACTATTTTTATTC-----AAGAGAAAAA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAA-GGAAAAA-CTGA----------------A-CGCAA-AG-C--A--------TTTT-CCA-T-CAATTgagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCAT-----------------------ATCAAACACGTTAGTTAAAGCTTTTCAATA-------------AGAGAA-ACT-TTTGTGT-TTACTATTTTT---ATTCAAGAGAA------AA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAA-GGAAAAA-CTGA----------------A-CGCAA-AG-C--A--------TTTT-CCA-T-CAATTc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGG--TA-------T--A--TTAATTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGA----AA-T--GAA-------CG------TTCCAGC--AAGATCCT-TCGGAGATGA-CTCCGTGGTATGGG--AA--CACAAGAGCCAT-TTAGCATG-----------------GT--TCTCAA-A-CGGTACTCTCGTTTGTAATTATAAA--TC----GTTGATAT-AC---ATCAT-----------T-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATT---ATCA-T--A--ACT-CTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT----TGGTTAT-TTTTcgc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111 11111111111111111111111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 222222 22222222222222222222 11111111111111111111111111111111111 222222 00000000000000000000000000000000000 111 1 1 6666666666666666666666666 6666666666666666666666 11111111 2222222222222222222222 1111111111111 22222222222222222222222222222222222222222 11 55555555555555555555555555555 3333333333333333333333 111111111111111111111111111111111111111111111 1 1 3333333333333333 1 222 4444444444 1 1 1 1
lowQualScore : 6 4 222222 0 5 5 66 22222222222222222222 4 4 77 11111111111111111111111111111111111 0 6 0 3 888888 0 88888888888888888888888888888888888 222 0 0 3 9999999999999999999999999 33 55 3 1 8 2222222222222222222222 4 888888888 0 4 44444444 6666666666666666666666 7777 55 1 8 66 7777777777777 1 2 00000000000000000000000000000000000000000 77 22 5 5 77 66666666666666666666666666666 3333333333333333333333 2 1 888 5 0 444444444444444444444444444444444444444444444 77 6 2 3 99 0 2 1 6 4444444444444444 3 0 333 1111111111 5 5 1 5 1 1 5
lowQualScore : . . ...... . . . .. .................... . . .. ................................... . . . . ...... . ................................... ... . . . ......................... .. .. . . . ...................... . ......... . . ........ ...................... .... .. . . .. ............. . . ......................................... .. .. . . .. ............................. ...................... . . ... . . ............................................. .. . . . .. . . . . ................ . . ... .......... . . . . . . .
lowQualScore : 7 0 777777 5 0 0 99 22222222222222222222 4 4 77 55555555555555555555555555555555555 8 4 8 8 000000 8 88888888888888888888888888888888888 222 0 0 2 5555555555555555555555555 99 44 4 4 9 2222222222222222222222 0 555555555 7 0 55555555 5555555555555555555555 7777 00 4 0 99 3333333333333 0 7 33333333333333333333333333333333333333333 33 33 7 7 99 44444444444444444444444444444 0000000000000000000000 2 0 222 0 9 222222222222222222222222222222222222222222222 77 7 0 2 00 0 5 0 5 1111111111111111 3 7 333 0000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAA-NA----G--C--G-AA-------CGT------C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AA-TATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCACTTCAAA--------------------AACA-------------A---AA-ACT-NTT-TGT-TT--TATTA---TTATTC------AAAA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAA-GAAAAAATTGA----------------A-C-CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAA-NA----G--C--G-AA-------CGT------C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AA-TATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCACTTCAAA--------------------AACA-------------A---AA-ACT-NTT-TGT-TT--TATTA---TTATTC------AAAA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAA-GAAAAAACGGA----------------A-C-CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCGAAAA-GA----G----------------------------------TTACTAAAGTTGAACTGCGTGATATGGG--ACTCCACGAGGGTGAT-T---T-TG-----------------TT--T---AG-A-TGATACTCCCGGTTG-AA-TACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAAC-ATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-A---ATT---CTGA-TCAATTACT-C-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT----T--TCAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCACCTTAAA--------------------AAC--------------A---AA-ACT-ATT-TGT-TT--TATTA---TTAT---------GAA---------CATAATCAAATGATAAGAAG-AAAT-TAATT-TTGTAATTCTTTCTTTGATC--GCGGTATCAAA-GAAGAAATGGA----------------ATT-CAA---A-CTTAGTAA---G-TTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA-AAAATTACAA-GATTCATTTCGT---AATTC-----T----TATAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT----T--TTTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCACTTAGAA--------------------AACATTAATTTACTGAGA---GATGCT-GTC-TGT-TT--TATTA---TT---C------AAAAA--------CATAATTAAAT-------------------C-TTATAGTTCTTTTTGTGATC--GCGGTATCAAA-GAAAAAATTGG----------------A-C-------A-T---ATAAAACG-ATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAAG----AAT--TAT---AA-GATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCATTTCAAA--------------------A-CG-------------T---AA--CT-ATT-TGA-TT--TAGTT---TTTTTC------AAAA---------CATAACTAAATG-------G-AAAT-AGA---TCATAAATCTTTTTTGGATG--ATGGCATTGAT-G--------------------------------------------AA---G-TTAT-TCG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGATC----AAGAAAA
gi|14 : ttcactacGTCCAATCCA-TTTA---ATT---CTCA-G--A--ACT-C-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT----G--TGGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCACTTCAAACATT----------------AATA-------------A---AA-
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGC-TTT-ACGATTTCGATCGAAAA-TAAGTGA--C--G-AAGCTTGATCTT------C--GAGATAtgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAA-CAT---G--CCGG-AA-------TAT------TTTG-GATATTACTAAAGTTGAACTGTGTAATATGGG--A---CACGAGGGCGG-------ATG-----------------ATACT---AATT-TGGTACTCCCa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT----------------T--A--ATTAC-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT----T--TTAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGC-TTT-ACGAGTTCGATCGAAAA-CA----GGAC--GGAA-------CATGATCTTC--GAGATATTACTGAAGTTGAACTGCGTTATATGGGGCAC--AACGAGGGCGATGTA--CATGATGCGATTTAGATGATACT--C---AA-A-TGGTGTTCCCGGTTA-AA-TATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-A---ATTCTGCTCACT--A--AAT-C-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGTTGT--TTACATTTTA--CGTG---C---A----TGTATTCATGCGCGTCACTTAAAA--------------------AACgtat
gi|20 : ATT-TTATAATTGTTTTTGTGATTTTGCGGTATCAAA-GAAAAAAccacatttattaaagattatttatgagagaa
gi|21 : taatgaaCT-C-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT----T--
gi|22 : AAG-AAAT-TAATT-TCATAATTCTTTTTATGATC--GCGGAATCAAA-GA
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGG--TA-------T--ACAATT----TATCGTCTGC-TTT-ACGAGTTCGATCG
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-G---ATTGTGCTGG-T--A--ACT-C-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT----T--TAAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCACTTC-AA--------------------AACATTAATT-------A---AA-GCT--TA-TGT-TT--TAGTG---------------AAAATGTTTCTTTCATTATT------TAA-----AAAC-T--TT-T-------CTTTTTATCATC--GTGGTATCAAAGGAAAAAATGGACGAAGTTTTTTGTTTTA-T-CAATGCG-C---ATAA---GTTTTT-CCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAA-AAA----AGTACAAG---AATGATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAATA-------T--C--ATA----TATCGTCTGC-TCT-ACGTGTTCGGTAAAAAA-AA------------AA-------TGA------C--GGAACATTACC-AAGTTGAACTGTGCG----GGG--A---CACG-TGGCTAT---------------------------C--T---AA-ATTGGTACTCATAGCTG-AA-T-T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-A---AC----------------CC-C-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCACTTCAAA--------------------AACA-------------T---TA-ATTAAAT-TGTATT--TATTA---
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T-------T-C---------ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAATA-------------AGAGAA-ACT-TTT-TGT-TT--TACTATTTTTATTCAAGAGAAAAA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAA-GGAAAAACTGA----------------A-CGCAA---AGC---A--------TTTT-CCA-T-CAATTgagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAATA-------------AGAGAA-ACT-TTTGTGT-TTACTATTT---TTATTCAAGAG-AAAA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAA-GGAAAAACTGA----------------A-CGCAA---AGC---A--------TTTT-CCA-T-CAATTc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGG--TA-------T--A--TTAATTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGAA----A--T--G-AA-------CGTTCCAG-C--AAGATCCT-TCGGAGATG-ACTCCGTGGTATGGG--AA--CACAAGAGCCAT-TTAGCATG-----------------GT--TCTCAA-A-CGGTACTCTCGTTTGTAATTATAAA--TC----GTTGATAT-AC---AT-----------CATT-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATT---ATCA-T--A--ACT-CTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT----TGGTTAT-TTTTcgc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 222222 22222222222222222222 11111111111111111111111111111111111 222222 00000000000000000000000000000000000 111 1 1 6666666666666666666666666 6666666666666666666666 11111111 2222222222222222222222 1111111111111 888888888888888888888888888888888888888888888888888 11 66666666666666666666666666 3333333333333333333333 1111111111111111111111111111111111111111 1 1 3333333333333333 1 222 4444444444 1 1 1 1
lowQualScore : 6 4 222222 0 5 5 66 22222222222222222222 4 4 77 11111111111111111111111111111111111 0 6 0 3 888888 0 88888888888888888888888888888888888 222 0 0 3 9999999999999999999999999 33 55 3 1 8 2222222222222222222222 4 555 999 0 4 44444444 6666666666666666666666 7777 55 1 8 66 7777777777777 1 2 555555555555555555555555555555555555555555555555555 77 22 5 5 77 0 33333333333333333333333333 3333333333333333333333 2 1 888 4 4 8888888888888888888888888888888888888888 77 6 2 3 99 0 2 1 6 4444444444444444 3 0 333 1111111111 5 5 1 5 1 1 5
lowQualScore : . . ...... . . . .. .................... . . .. ................................... . . . . ...... . ................................... ... . . . ......................... .. .. . . . ...................... . ... ... . . ........ ...................... .... .. . . .. ............. . . ................................................... .. .. . . .. . .......................... ...................... . . ... . . ........................................ .. . . . .. . . . . ................ . . ... .......... . . . . . . .
lowQualScore : 7 0 777777 5 0 0 99 22222222222222222222 4 4 77 55555555555555555555555555555555555 8 4 8 8 000000 8 88888888888888888888888888888888888 222 0 0 2 5555555555555555555555555 99 44 4 4 9 2222222222222222222222 0 333 777 7 0 55555555 5555555555555555555555 7777 00 4 0 99 3333333333333 0 7 555555555555555555555555555555555555555555555555555 33 33 7 7 99 6 33333333333333333333333333 0000000000000000000000 2 0 222 3 2 5555555555555555555555555555555555555555 77 7 0 2 00 0 5 0 5 1111111111111111 3 7 333 0000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAA-NA----G--C--G-AA-------CGT------C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AA-TATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAAGGAAAAACTGAA-CG----------------CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAA-NA----G--C--G-AA-------CGT------C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AA-TATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGATC--GCGGTATCAAAGAAAAAATTGAA-C-----------------CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCGAAAA-GA----G----------------------------------TTACTAAAGTTGAACTGCGTGATATGGG--ACTCCACGAGGGTGAT-T---T-TG-----------------TT--T---AG-A-TGATACTCCCGGTTG-AA-TACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAAC-ATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-A---ATT---CTGA-TCAATTACT-C-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT----T--TCAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCAC-----------------------CTTAAA----AAC--------------AAA-ACT-ATT-TGT-TT--TATTATT---AT---G------AA---------CATAATCAAATGATAAGAAG-AAAT-TAATT-TTGTAATTCTTTCTTTGATC--GCGGTATCAAAGAAGAAATGGAATT-----------------CAA---A-CTTAGTAA---G-TTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA-AAAATTACAA-GATTCATTTCGT---AATTC-----T----TATAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT----T--TTTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCAC-----------------------TTAGAA----AACATTAATTTACTGAGAGATGCT-GTC-TGT-TT--TATTATT------CAA------AAA--------CATAATTAAAT-------------------C-TTATAGTTCTTTTTGTGATC--GCGGTATCAAAGAAAAAATTGGA-C-----------------------A-T---ATAAAACG-ATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAAG----AAT--TAT---AA-GATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCAT-----------------------TTCAAA----A-CG-------------TAA--CT-ATT-TGA-TT--TAGTTTT---TTTCAA------AA---------CATAACTAAATG-------G-AAAT-AGA---TCATAAATCTTTTTTGGATG--ATGGCATTGA---------TG-----------------------------------AA---G-TTAT-TCG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGATC----AAGAAAA
gi|14 : ttcactacGTCCAATCCA-TTTA---ATT---CTCA-G--A--ACT-C-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT----G--TGGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCAC-----------------------TTCAAACATTAATA-------------AAA-
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGC-TTT-ACGATTTCGATCGAAAA-TAAGTGA--C--G-AAGCTTGATCTT------C--GAGATAtgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAA-CAT---G--CCGG-AA-------TAT------TTTG-GATATTACTAAAGTTGAACTGTGTAATATGGG--A---CACGAGGGCGG-------ATG-----------------ATACT---AATT-TGGTACTCCCa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT----------------T--A--ATTAC-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT----T--TTAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGC-TTT-ACGAGTTCGATCGAAAA-CA----GGAC--GGAA-------CATGATCTTC--GAGATATTACTGAAGTTGAACTGCGTTATATGGGGCAC--AACGAGGGCGATGTA--CATGATGCGATTTAGATGATACT--C---AA-A-TGGTGTTCCCGGTTA-AA-TATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-A---ATTCTGCTCACT--A--AAT-C-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGTTGT--TTACATTTTA--CGTG---C---A----TGTATTCATGCGCGTCAC-----------------------TTAAAA----AACgtat
gi|20 : ATT-TTATAATTGTTTTTGTGATTTTGCGGTATCAAAGAAAAAAccacatttattaaagattatttatgagagaa
gi|21 : taatgaaCT-C-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT----T--
gi|22 : AAG-AAAT-TAATT-TCATAATTCTTTTTATGATC--GCGGAATCAAAGA
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGG--TA-------T--ACAATT----TATCGTCTGC-TTT-ACGAGTTCGATCG
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-G---ATTGTGCTGG-T--A--ACT-C-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT----T--TAAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCAC-----------------------TTC-AA----AACATTAATT-------AAA-GCT--TA-TGT-TT--TAGTG---------AA------AATGTTTCTTTCATTATT------TAA-----AAAC-T--TT-T-------CTTTTTATCATC--GTGGTATCAAAGGAAAAAATGGA-CGAAGTTTTTTGTTTTATCAATGCG-C---ATAA---GTTTTT-CCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAA-AAA----AGTACAAG---AATGATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAATA-------T--C--ATA----TATCGTCTGC-TCT-ACGTGTTCGGTAAAAAA-AA------------AA-------TGA------C--GGAACATTACC-AAGTTGAACTGTGCG----GGG--A---CACG-TGGCTAT---------------------------C--T---AA-ATTGGTACTCATAGCTG-AA-T-T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-A---AC----------------CC-C-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCAC-----------------------TTCAAA----AACA-------------TTA-ATTAAAT-TGTATT--TATTA
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTT-TGT-TT--TACTATTTTTATTCAAGAGAAAAA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAAGGAAAAACTGAA-CG----------------CAA---AGC---A--------TTTT-CCA-T-CAATTgagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTTGTGT-TTACTATTTTT---ATTCAAGAGAA-AA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAAGGAAAAACTGAA-CG----------------CAA---AGC---A--------TTTT-CCA-T-CAATTc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGG--TA-------T--A--TTAATTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGAA----A--T--G-AA-------CGTTCCAG-C--AAGATCCT-TCGGAGATG-ACTCCGTGGTATGGG--AA--CACAAGAGCCAT-TTAGCATG-----------------GT--TCTCAA-A-CGGTACTCTCGTTTGTAATTATAAA--TC----GTTGATAT-AC---AT-----------CATT-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATT---ATCA-T--A--ACT-CTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT----TGGTTAT-TTTTcgc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 111111111111111111111111111111111111111 11111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 222222 22222222222222222222 111111111111111111111111111111111111111 222222 00000000000000000000000000000000000 111 1 7777777777777777777777777777 6666666666666666666666 11111111 2222222222222222222222 1111111111111 888888888888888888888888888888888888888888888888888 11 66666666666666666666666666 3333333333333333333333 00000000000000000000000000000000000000 1 1 3333333333333333 1 222 4444444444 1 1 1 1
lowQualScore : 6 4 222222 0 5 5 66 22222222222222222222 4 4 1 888888888888888888888888888888888888888 0 6 0 3 888888 0 88888888888888888888888888888888888 222 0 7777777777777777777777777777 2 77 55 3 1 8 2222222222222222222222 4 555 999 0 4 44444444 6666666666666666666666 7777 55 1 8 66 7777777777777 1 2 555555555555555555555555555555555555555555555555555 77 22 5 5 77 0 33333333333333333333333333 3333333333333333333333 2 1 66 1 0 3 4 11111111111111111111111111111111111111 77 6 2 3 99 0 2 1 6 4444444444444444 3 0 333 1111111111 5 5 1 5 1 1 5
lowQualScore : . . ...... . . . .. .................... . . . ....................................... . . . . ...... . ................................... ... . ............................ . .. .. . . . ...................... . ... ... . . ........ ...................... .... .. . . .. ............. . . ................................................... .. .. . . .. . .......................... ...................... . . .. . . . . ...................................... .. . . . .. . . . . ................ . . ... .......... . . . . . . .
lowQualScore : 7 0 777777 5 0 0 99 22222222222222222222 4 4 0 222222222222222222222222222222222222222 8 4 8 8 000000 8 88888888888888888888888888888888888 222 0 5555555555555555555555555555 5 00 44 4 4 9 2222222222222222222222 0 333 777 7 0 55555555 5555555555555555555555 7777 00 4 0 99 3333333333333 0 7 555555555555555555555555555555555555555555555555555 33 33 7 7 99 6 33333333333333333333333333 0000000000000000000000 2 0 99 4 4 7 2 77777777777777777777777777777777777777 77 7 0 2 00 0 5 0 5 1111111111111111 3 7 333 0000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA----G--C--GAA-------CG------T-----C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGA--TCGCGGTATCAAAGGAAAAACTGAACG----------------CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA----G--C--GAA-------CG------T-----C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGA--TCGCGGTATCAAAGGAAAAACTGAACG----------------CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCGAAAAGA----G--------------------------------------TTACTAAAGTTGAACTGCGTGATATGGG--ACTCCACGAGGGTGAT-T---T-TG-----------------TT--T---AG-A-TGATACTCCCGGTTG-AAT-ACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAAC-ATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-A---ATT---CTGA-TCAATTACT-C-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT----T--TCAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCAC-----------------------CTTAAA----AAC--------------AAA-ACT-ATT-TGT-TT--TATTATT---AT---G------AA---------CATAATCAAATGATAAGAAG-AAAT-TAATT-TTGTAATTCTTTCTTTGA--TCGCGGTATCAAAGAAGAAATGGAATT----------------CAA---A-CTTAGTAA---G-TTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA-AAAATTACAA-GATTCATTTCGT---AATTC-----T----TATAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT----T--TTTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCAC-----------------------TTAGAA----AACATTAATTTACTGAGAGATGCT-GTC-TGT-TT--TATTATT------CAA------AAA--------CATAATTAAAT-------------------C-TTATAGTTCTTTTTGTGA--TCGCGGTATCAAAGAAAAAATTGGAC-----------------------A-T---ATAAAACG-ATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAAG----AAT--TAT---AA-GATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCAT-----------------------TTCAAA----A-CG-------------TAA--CT-ATT-TGA-TT--TAGTTTT---TTTCAA------AA---------CATAACTAAATG-------G-AAAT-AGA---TCATAAATCTTTTTTGGA--TGATGGCATTGA---------TG----------------------------------AA---G-TTAT-TCG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGATC----AAGAAAA
gi|14 : ttcactacGTCCAATCCA-TTTA---ATT---CTCA-G--A--ACT-C-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT----G--TGGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCAC-----------------------TTCAAACATTAATA-------------AAA-
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGC-TTT-ACGATTTCGATCGAAAATAAGTGA--C--GAAGCTTGATCT------T-----C--GAGATAtgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAACAT---G--CCGGAA-------TA------T-----TTTG-GATATTACTAAAGTTGAACTGTGTAATATGGG--A---CACGAGGGCGG-------ATG-----------------ATACT---AATT-TGGTACTCCCa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT----------------T--A--ATTAC-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT----T--TTAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGC-TTT-ACGAGTTCGATCGAAAACA----GGACG-GAA-------CATGATCTT-----C--GAGATATTACTGAAGTTGAACTGCGTTATATGGGGCAC--AACGAGGGCGATGTA--CATGATGCGATTTAGATGATACT--C---AA-A-TGGTGTTCCCGGTTA-AAT-ATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-A---ATTCTGCTCACT--A--AAT-C-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGTTGT--TTACATTTTA--CGTG---C---A----TGTATTCATGCGCGTCAC-----------------------TTAAAA----AACgtat
gi|20 : ATT-TTATAATTGTTTTTGTGATTTTGCGGTATCAAAGAAAAAAccacatttattaaagattatttatgagagaa
gi|21 : taatgaaCT-C-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT----T--
gi|22 : AAG-AAAT-TAATT-TCATAATTCTTTTTATGA--TCGCGGAATCAAAG
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGG--TA-------T--ACAATT----TATCGTCTGC-TTT-ACGAGTTCGATCGa
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-G---ATTGTGCTGG-T--A--ACT-C-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT----T--TAAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCAC-----------------------TTC-AA----AACATTAATT-------AAA-GCT--TA-TGT-TT--TAGTG---------AA------AATGTTTCTTTCATTATT------TAA-----AAAC-T--TT-T-------CTTTTTATCA--TCGTGGTATCAAAGGAAAAAATGGACGAAGTTTTTTGTTTTATCAATGCG-C---ATAA---GTTTTT-CCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAA-AAA----AGTACAAG---AATGATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAATA-------T--C--ATA----TATCGTCTGC-TCT-ACGTGTTCGGTAAAAAAAA-----------AA-------TG------A-----C--GGAACATTACC-AAGTTGAACTGTGCG----GGG--A---CACG-TGGCTAT---------------------------C--T---AA-ATTGGTACTCATAGCTG-AAT--T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-A---AC----------------CC-C-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCAC-----------------------TTCAAA----AACA-------------TTA-ATTAAAT-TGTATT--TATTA
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTT-TGT-TT--TACTATTTTTATTCAAGAGAAAAA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCA--TGGCGGTATCAAAGGAAAAACTGAACG----------------CAA---AGC---A--------TTTT-CCA-T-CAATTgagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTTGTGT-TTACTATTTTT---ATTCAAGAGAA-AA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCA--TGGCGGTATCAAAGGAAAAACTGAACG----------------CAA---AGC---A--------TTTT-CCA-T-CAATTc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGG--TA-------T--A--TTAATTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGA----AA-T--GAA-------CG------TTCCAGC--AAGATCCT-TCGGAGATGA-CTCCGTGGTATGGG--AA--CACAAGAGCCAT-TTAGCATG-----------------GT--TCTCAA-A-CGGTACTCTCGTTTGTAATTATAAA--TC----GTTGATAT-AC---ATCAT-----------T-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATT---ATCA-T--A--ACT-CTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT----TGGTTAT-TTTTcgc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 111111111111111111111111111111111111111 11111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 222222 22222222222222222222 111111111111111111111111111111111111111 222222 00000000000000000000000000000000000 111 1 7777777777777777777777777777 6666666666666666666666 11111111 2222222222222222222222 1111111111111 888888888888888888888888888888888888888888888888888 11 66666666666666666666666666 3333333333333333333333 00000000000000000000000000000000000000 1 1 3333333333333333 1 222 4444444444 1 1 1 1
lowQualScore : 6 4 222222 0 5 5 66 22222222222222222222 4 4 1 888888888888888888888888888888888888888 0 6 0 3 888888 0 88888888888888888888888888888888888 222 0 7777777777777777777777777777 2 77 55 3 1 8 2222222222222222222222 4 555 999 0 4 44444444 6666666666666666666666 7777 55 1 8 66 7777777777777 1 2 555555555555555555555555555555555555555555555555555 77 22 5 5 77 0 33333333333333333333333333 3333333333333333333333 2 1 66 1 0 3 4 11111111111111111111111111111111111111 77 6 2 3 99 0 2 1 6 4444444444444444 3 0 333 1111111111 5 5 1 5 1 1 5
lowQualScore : . . ...... . . . .. .................... . . . ....................................... . . . . ...... . ................................... ... . ............................ . .. .. . . . ...................... . ... ... . . ........ ...................... .... .. . . .. ............. . . ................................................... .. .. . . .. . .......................... ...................... . . .. . . . . ...................................... .. . . . .. . . . . ................ . . ... .......... . . . . . . .
lowQualScore : 7 0 777777 5 0 0 99 22222222222222222222 4 4 0 222222222222222222222222222222222222222 8 4 8 8 000000 8 88888888888888888888888888888888888 222 0 5555555555555555555555555555 5 00 44 4 4 9 2222222222222222222222 0 333 777 7 0 55555555 5555555555555555555555 7777 00 4 0 99 3333333333333 0 7 555555555555555555555555555555555555555555555555555 33 33 7 7 99 6 33333333333333333333333333 0000000000000000000000 2 0 99 4 4 7 2 77777777777777777777777777777777777777 77 7 0 2 00 0 5 0 5 1111111111111111 3 7 333 0000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA----G--C--GAA-------CG------T-----C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGA--TCGCGGTATCAAAGGAAAAACTGAACG----------------CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA----G--C--GAA-------CG------T-----C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGA--TCGCGGTATCAAAGGAAAAACTGAACG----------------CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCGAAAAGA----G--------------------------------------TTACTAAAGTTGAACTGCGTGATATGGG--ACTCCACGAGGGTGAT-T---T-TG-----------------TT--T---AG-A-TGATACTCCCGGTTG-AAT-ACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAAC-ATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-A---ATT---CTGA-TCAATTACT-C-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT----T--TCAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCAC-----------------------CTTAAA----AAC--------------AAA-ACT-ATT-TGT-TT--TATTATT---AT---G------AA---------CATAATCAAATGATAAGAAG-AAAT-TAATT-TTGTAATTCTTTCTTTGA--TCGCGGTATCAAAGAAGAAATGGAATT----------------CAA---A-CTTAGTAA---G-TTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA-AAAATTACAA-GATTCATTTCGT---AATTC-----T----TATAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT----T--TTTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCAC-----------------------TTAGAA----AACATTAATTTACTGAGAGATGCT-GTC-TGT-TT--TATTATT------CAA------AAA--------CATAATTAAAT-------------------C-TTATAGTTCTTTTTGTGA--TCGCGGTATCAAAGAAAAAATTGGAC-----------------------A-T---ATAAAACG-ATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAAG----AAT--TAT---AA-GATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGG--TA-------T--A--TTAATTTTATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCAT-----------------------TTCAAA----A-CG-------------TAA--CT-ATT-TGA-TT--TAGTTTT---TTTCAA------AA---------CATAACTAAATG-------G-AAAT-AGA---TCATAAATCTTTTTTGGA--TGATGGCATTGA---------TG----------------------------------AA---G-TTAT-TCG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGATC----AAGAAAA
gi|14 : ttcactacGTCCAATCCA-TTTA---ATT---CTCA-G--A--ACT-C-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT----G--TGGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCAC-----------------------TTCAAACATTAATA-------------AAA-
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGG--TAGGCTATGT--A--ATT----TATCGTCTGC-TTT-ACGATTTCGATCGAAAATAAGTGA--C--GAAGCTTGATCT------T-----C--GAGATAtgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAACAT---G--CCGGAA-------TA------T-----TTTG-GATATTACTAAAGTTGAACTGTGTAATATGGG--A---CACGAGGGCGG-------ATG-----------------ATACT---AATT-TGGTACTCCCa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT----------------T--A--ATTAC-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT----T--TTAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGG--TA-------TGTA--ATA----TTTCGCCTGC-TTT-ACGAGTTCGATCGAAAACA----GGACG-GAA-------CATGATCTT-----C--GAGATATTACTGAAGTTGAACTGCGTTATATGGGGCAC--AACGAGGGCGATGTA--CATGATGCGATTTAGATGATACT--C---AA-A-TGGTGTTCCCGGTTA-AAT-ATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-A---ATTCTGCTCACT--A--AAT-C-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGTTGT--TTACATTTTA--CGTG---C---A----TGTATTCATGCGCGTCAC-----------------------TTAAAA----AACgtat
gi|20 : ATT-TTATAATTGTTTTTGTGATTTTGCGGTATCAAAGAAAAAAccacatttattaaagattatttatgagagaa
gi|21 : taatgaaCT-C-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT----T--
gi|22 : AAG-AAAT-TAATT-TCATAATTCTTTTTATGA--TCGCGGAATCAAAG
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGG--TA-------T--ACAATT----TATCGTCTGC-TTT-ACGAGTTCGATCGa
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-G---ATTGTGCTGG-T--A--ACT-C-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT----T--TAAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCAC-----------------------TTC-AA----AACATTAATT-------AAA-GCT--TA-TGT-TT--TAGTG---------AA------AATGTTTCTTTCATTATT------TAA-----AAAC-T--TT-T-------CTTTTTATCA--TCGTGGTATCAAAGGAAAAAATGGACGAAGTTTTTTGTTTTATCAATGCG-C---ATAA---GTTTTT-CCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAA-AAA----AGTACAAG---AATGATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAATA-------T--C--ATA----TATCGTCTGC-TCT-ACGTGTTCGGTAAAAAAAA-----------AA-------TG------A-----C--GGAACATTACC-AAGTTGAACTGTGCG----GGG--A---CACG-TGGCTAT---------------------------C--T---AA-ATTGGTACTCATAGCTG-AAT--T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-A---AC----------------CC-C-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCAC-----------------------TTCAAA----AACA-------------TTA-ATTAAAT-TGTATT--TATTA
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTT-TGT-TT--TACTATTTTTATTCAAGAGAAAAA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCA--TGGCGGTATCAAAGGAAAAACTGAACG----------------CAA---AGC---A--------TTTT-CCA-T-CAATTgagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTTGTGT-TTACTATTTTT---ATTCAAGAGAA-AA---------CATAATTAAAGGATAAGAAATAAATCTTATTATCATAATTATTTTCTTCA--TGGCGGTATCAAAGGAAAAACTGAACG----------------CAA---AGC---A--------TTTT-CCA-T-CAATTc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGG--TA-------T--A--TTAATTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGA----AA-T--GAA-------CG------TTCCAGC--AAGATCCT-TCGGAGATGA-CTCCGTGGTATGGG--AA--CACAAGAGCCAT-TTAGCATG-----------------GT--TCTCAA-A-CGGTACTCTCGTTTGTAATTATAAA--TC----GTTGATAT-AC---ATCAT-----------T-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATT---ATCA-T--A--ACT-CTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT----TGGTTAT-TTTTcgc
blockSeqs : C G ACATGT A A AA GGCTATGTAATT T T T AGTGACGAAGCTTGATCTTCGA A A GCAC TGTACATGATGCGATTTAGATGATACTC TT T ATATATCTCATGATGTGCA C TG TA A A T AATTCTGCTCACTA A TT GGG A GTTTGAGT TATATATTAATAT GTTG GG T A AT ACAATAT G G ATCAAACACGTTAGTTAAAGCTTTTCAATAAGAG TG AA G A AC TTTATTCAAGAGAAAAA GGATAAGAAATAAATCTTATTA T G TT C T G GAAGTTTTTTGTTTTATCAATGCGCATAAGT A T T T TC G A G A AAGTACAAG T TAG AAACGTTTCG . C T A A A .
blockSeqs : . G T . . . TATTAATTT . . C GGACGGAACATGATCTTCGA G A AA TTTAGCATGGTTCTC AT . TATAAATCGTTGATATAC C CC T A C T CAGTTATTATCATA . TT TG . . TATATATTAATAT . . G A . ACTGCA C A ATCAAACACGTTAGTTAAAGCTTTTCAATAAGAG G G . . . AAAATGTTTCTTT GGATAAGAAATAAATCTTATTA C T . G A G ATATAAAACG T . T G CC . G C G GAATTAT . .
blockSeqs : . A T . . . TATTAATTT . . C AATGAACGTTCCAGCAA G G A ATGATACT A . TTCG C CC T A C . GATTGTGCTGGTA . C TG . . ATTAAGTGTTGT . . T . . CTTTA A G TTAGAAAACATTAATTTACTGAGA A A . . . ATTCAAGAGAAAA TGGAAATAGA T G . T C A GCAAAGCA C . C T CA . C T .
blockSeqs : . A . . . . TGTAATA . . A TGCCGGAATATTTTG . . A TCT A C CC T A T . TAATTCTCAGA . T AG . . ATGTACCGG . . T . . ACG A A TTCAAAACATTAATTA A T . . . TTTCAAAA TAAAAACTTT C A . C C A GCAAAGCA C . . T
blockSeqs : . G . . . . TACAATT . . G AATGACGG A CC A T G . TCAT . T GG . . ATTTAGCAT . . A . . GCA T A TTCAAACATTAATAA A T . . . CAAAAA TC C A . C . . AAG C . . .
blockSeqs : . . . . . TAATA . . A A T . G . TCAT . T TT . . ATTCAG . . C . . ACA A G TTCAAAAACAT . . . . . C T . G
blockSeqs : . . . TCATA . . . . . . C . AAC . T TG . . ATTTGA . . C . . TCT C G TTCAAAACGT . T . G
blockSeqs : . . . TA . . . . . CTTTAA . . C . TCT C .
blockSeqs : . . . . . ATTGG . . T .
blockSeqs : . .
blockSeqCons : T***** TANTAATT************ AGACGGAACATGATCTTCGA******************* A***** TCTATGATACT************************ CC ATTCAAAAA***************** GTAAGAAATAAATCTTA***** GCAAAGCG****************************** C*
originalCons : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGG--TA-------T--A--ATA----TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANA----G--C--GAA-------CG------T-----C--GAGATATTACCGAAGTTGAACTGCGTGATATGGG--AC--CACGAGGGCGAT-T---CATG-----------------NT--T---AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA------AA---------CATAATTAAATGATAAGAAG-AAAT-TNATT-TCATAATTCTTTTTNTGA--TCGCGGTATCAAAGGAAAAACTGAACG----------------CAA---A-C---ATAA---G-TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
finalCons : TATACGTAGTGATGACAC-AGGTT-----ATACACGAGTTCTCAGG-A-TATCGGG--TATANTAATT------------TATCGTCTGC-TTT-ACGAGTTCGATCGAAAANAAGACGGAACATGATCTTCGA-------------------GATATTACCGAAGTTGAACTGCGTGATATGGGA-----CACGAGGGCGATCTATGATACT------------------------AA-A-TGGTACTCCCGGTTG-AAT-ATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATTATTCAAAAA-----------------CATAATTAAAGTAAGAAATAAATCTTA-----TCATAATTCTTTTTNTGA--TCGCGGTATCAAAGGAAAAACTGAACGCAAAGCG------------------------------TTTTC-CG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG
Alignments
lowQualScore : 222222 11 55555555555555555555555 222 7777777777777777777777777777 111 1 1 6666666666666666666666666 6666666666666666666666 11111111 2222222222222222222222 1111111111111 88888888888888888888888888888888888888888888888888 11 55555555555555555555555555 6666666666666666666666666666666 7777777777777777777777777777777777777777 1 1 3333333333333333 1 222 4444444444 1 1 1 1
lowQualScore : 6 4 222222 0 5 5 888 00 8888 5 4 4 00000000000000000000000 3 555 0 6 0 3 8 888 9999999999999999999999999999 222 0 0 3 9999999999999999999999999 33 55 3 1 8 2222222222222222222222 4 555 999 0 4 44444444 6666666666666666666666 7777 55 1 8 66 7777777777777 1 2 88888888888888888888888888888888888888888888888888 5 22 5 5 77 5 77777777777777777777777777 0000000000000000000000000000000 1 888 0 3 5555555555555555555555555555555555555555 77 6 2 3 99 0 2 1 6 4444444444444444 3 0 333 1111111111 5 5 1 5 1 1 5
lowQualScore : . . ...... . . . ... .. .... . . . ....................... . ... . . . . . ... ............................ ... . . . ......................... .. .. . . . ...................... . ... ... . . ........ ...................... .... .. . . .. ............. . . .................................................. . .. . . .. . .......................... ............................... . ... . . ........................................ .. . . . .. . . . . ................ . . ... .......... . . . . . . .
lowQualScore : 7 0 777777 5 0 0 888 99 8888 0 4 4 33333333333333333333333 2 222 8 4 8 8 0 000 2222222222222222222222222222 222 0 0 2 5555555555555555555555555 99 44 4 4 9 2222222222222222222222 0 333 777 7 0 55555555 5555555555555555555555 7777 00 4 0 99 3333333333333 0 7 55555555555555555555555555555555555555555555555555 0 33 7 7 99 4 33333333333333333333333333 5555555555555555555555555555555 0 222 4 7 5555555555555555555555555555555555555555 77 7 0 2 00 0 5 0 5 1111111111111111 3 7 333 0000000000 0 0 0 5 0 0 0
consensus : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGGTA---TAN-TAA-TTT-ATCGTCTGC-TTT-ACGAGTTCGATCGAAAANAA--GACGGAACAT--TCT-TCGAGATATTACCGAAGTTGAACTGCGTGATATGGG-AC-C-ACGAGGGCGATTTA---------------ATGATACTCAA-A-TGGTACTCCCGGTTG-AA-TATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------GAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA-----AAA---------CATAATTAAA--G--T---AAGAAAT-AAATCTTAT---CATAATTCTTTTTNTGATC--GCGGTATCAAAGGAAAAACTGAAC--G----------------CAA----AGC--G-------TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
Reference ( family-219 ) : TATACGTAGTGATGACAC-AGGT-----TATACACGAGTTCTCAGG-A-TATCGGGTA---TAN-TAA-TTT-ATCGTCTGC-TTT-ACGAGTTCGATCGAAAANAA--GACGGAACATGATCT-TCGAGATATTACCGAAGTTGAACTGCGTGATATGGG-AC---ACGAGGGCGATCT----------------ATGATACT-AA-A-TGGTACTCCCGGTTG-AA-TATATA--TC----GTT-ATGT-AC---ATCATCTTTTAACCATT-GCACCTTTAATTTCGCGTCCAGTCCA-TT-A---ATT---CTCA-T--A--ACT-C-T-ATCTG-ACCTGAACGCACAGCC-A--------TTTTGA-----ATT--TA---G------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATTCNTGCGCGTCAC-----------------------TTCAAA----AACA-------------AAA-ACT-NTT-TGT-TT--TATTATT---ATTCAA-----AAA---------CATAATTAAA--G--T---AAGAAAT-AAATCTTAT---CATAATTCTTTTTNTGATC--GCGGTATCAAAGGAAAAACTGAAC--G----------------CAA----AGC--G-------TTTT-CCG-TCCAATTTTTCCTTTGATA-CCGCNATCAAAAGAAA----AATAAAAT---AA-GATTCGTTTCTT---AATTCAAACGTTTCGTATAAAAGTGCTCNCATCANAGANTCTCGACT
gi|1 : TATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGGTA---TAA-TA----T-ATCGTTTAC-TTT-GCGAGTTCGATCGAAAA-----------------------GAG---TTACTAAAGTTGAACTGCGTGATATGGG-ACTCCACGAGGGTGATTT-----------------TGTT--T-AG-A-TGATACTCCCGGTTG-AA-TACATA--CCTCATGTTCATGTTACCTAATCATCTTTTAAC-ATT-GCACTTTTAATTTCGCGTCCAATTGA-TT-A---ATT---CTGA-TCAATTACT-C-T-ATCTG-ACTTGAACGCACAGCC-A--------TTTAGA-----ATT--TA---G------TGTT----T--TCAT-TGTTA--CGTA---C---A----TGTATTCGTATGCGTCAC-----------------------CTTAAA----AAC--------------AAA-ACT-ATT-TGT-TT--TATTATT---AT---------GAA---------CATAATCAAATGA--TAAGAAGAAAT-TAATTTT------GTAATTCTTTCTTTGATC--GCGGTATCAAAGAAGAAATGGAAT--T----------------CAAACTTAGTAAG-------TTTTGACG-TCCAATTTTT--TTTGATA-CCGCGATAAAAAGAAATAGGAA-AAAATTACAA-GATTCATTTCGT---AATTC-----T----TATAAAAGTG-TCGC-TCACAGATTCTCGACT
gi|10 : TT----T--TTTT-TTTTA--CTT----CTTTA----TGTATTCGTGCGTGTCAC-----------------------TTAGAA----AACATTAATTTACTGAGAGATGCT-GTC-TGT-TT--TATTATT------CAA-----AAA---------CATAATTAAA--------------------TCTTAT------AGTTCTTTTTGTGATC--GCGGTATCAAAGAAAAAATTGGACATA----------------TAA----AAC--G-------ATTT-ACGTTTCAATTTTTTCTTTGATAGGAGCGATCACAAAAAG----AAT--TAT---AA-GATTCGTTTCTCTAGAATTCAAACGTTTCGTATAAAA-TGCTCTCATCAAAGAATCT-GACTat
gi|11 : ttaaattttttttTAGTGATTACACCAGGT------ATACACGAGTTTTCCGGAA-TATCCGGTA---TAT-TAATTTT-ATTGTCTGCTTTT-ACGAGTTCGATCGttg
gi|13 : gaacatatatttctacaccaatttcatttcaacatcatcaaaatgcatttgggtttgattttttgatgttgctataaaaaataaacatcaattaaatgcataaataaaaaaaaaaaaaacatattgtaaacattctaggaaaaaaacaataatA---C---G----TGTATTCCTACGCGTCAT-----------------------TTC-AA----AAC--------------GTA-ACT-ATT-TGA-TT--TAGTTTT---TTTC-A-----AAA---------CATAACTAAA-----T----GGAAAT-AG-----AT---CATAAATCTTTTTTGGATG--ATGGCATTGA---------TGAA--------------------------------G-------TTAT-TCG-TTCAA-TTTTCCTTTGATA-CGGCCATCAAAAGATC----AAGAAAA
gi|14 : ttcactacGTCCAATCCA-TTTA---ATT---CTCA-G--A--ACT-C-TTATTGGGACGTGAACGCAGTGCC-A--------TTTTAA-----A-T--TG---G------TGTT----G--TGGTATTTTAATCATA---C---AATATTGCATTCAT-CGATCCAC-----------------------TTCAAACATTAATA-------------AAA-
gi|16 : atgGT-----TATATGCGAGTTCCAAGG-A-TATCGGGTAGGCTATGTAA-TTT-ATCGTCTGC-TTT-ACGATTTCGATCGAAAATAAGTGACGAAGCTTGATCT-TCGAGATAtgatatatacagaaaaactatctgtttgttattaatacttt
gi|17 : tacgta-TTT-ACGAGTTTGATCGAAAACAT--GCCGGAATAT----T-TTG-GATATTACTAAAGTTGAACTGTGTAATATGGG-AC---ACGAGGGCGG-------------------ATGATACT-AATT-TGGTACTCCCa
gi|18 : CATCCTTTAGTGATTAGC-CCTTTAATTTAGCGTCCAATTCA-TT----------------T--A--ATTAC-C-ACCTG-ACCTGAACG--CAACC-A--------TTTTGA-----ATG--TACCGG------TAGT----T--TTAT-TTT
gi|2 : TACATGTAGTGATGACAC-AG------------------TCTCAGG-A-TATCGGGTA---T-G-TAA-TAT-TTCGCCTGC-TTT-ACGAGTTCGATCGAAAACAG--GACGGAACATGATCT-TCGAGATATTACTGAAGTTGAACTGCGTTATATGGG-GCACAACGAGGGCGATGTACATGATGCGATTTAGATGATACTCAA-A-TGGTGTTCCCGGTTA-AA-TATATATCTC----ATG-ATGT-GCA--ATCATCTTTTAACCATT-GCA-CTTGAATTTCGCGTCCAGTCCATTT-A---ATTCTGCTCACT--A--AAT-C-T-ATTTG-ACATGAATGCACAGCC-A--------TTTTGA-----ATT--CA---G------TGTTGTTGT--TTACATTTTA--CGTG---C---A----TGTATTCATGCGCGTCAC-----------------------TTAAAA----AACgtat
gi|20 : AATGAAATTTTAT------AATTGTTTTTGTGATTTTGCGGTATCAAAGAAAAAAccacatttattaaagattatttatgagagaa
gi|21 : tCT-C-T-ACCAG-ACCTGAATGCACAGCC-A--------TTTTGA-----ATT--TA---GCAT---TGTT----T--
gi|22 : ---AAGAAAT-TAATTT------CATAATTCTTTTTATGATC--GCGGAATCAAAG
gi|3 : ATACGTAGTGATGACAC-AGATACATGTATACATAAGTTATCAGG-A-TAATGGGTA---TAC--AA-TTT-ATCGTCTGC-TTT-ACGAGTTCGATCGa
gi|4 : cgattctgattggctgaaaaattgctgcataaacagagagtcatatgcacttagcagtcgggactacgtttctctggaatgcgtcttcgttccctgttcgaatcttatcgctaattatagaacgggtatttccacatcaatttcattttcaaaatagacaaaatgtatatgtttggcgtttttgctacattgctatcttgctataaaaaataaacacaatcaaatgcatagatgaataaattaatctaaagatctagaaaaaaacccTATACGTAGTGGTGATAC-AGAT-----TATTCACGAGTTCTAAGG-A-TATCGGGTA---TAA-TA----T-ATCGTTTAC-TTT-GCGAGTTCGATCG
gi|5 : aattatttaataccctttcaagtgatggcttaacagcgattctgatttgatgaaaagtttgtttgatttcttaataaaaagaaaatgttagtccaggagttcatctgcactatttgatgacattcactttcttccccgttctaattctagcgctaaatatgaaacgggaataagcacataaatttcattgtaaacaaaatgtattcgtttaatgttcttttcaccgctatcaaaaatatatacggtaggtgtattaaaaaaacccacccttCATCTTTTAACCATT-GTACCTTTAGTTTCGCGTCCAGTTCATTT-G---ATTGTGCTGG-T--A--ACT-C-T-ACCGG-ACCTGAACGCATACCT-A--------TTTTGA-----ATT--AA---GTGTTGTTGTT----T--TAAT-TCTTA--CATACTGC---A----TGCACTCTCACGCGTCAC-----------------------TTC-AA----AACATTAATT-------AAA-GCT--TA-TGT-TT--TAGT----------GA-----AAATGTTTCTTTCATTATT--------T---AAAAA-------CTT----------TTCTTTTTATCATC--GTGGTATCAAAGGAAAAAATGGAC--GAAGTTTTTTGTTTTATCAA----TGC--GCATAAGTTTTT-CCA-TCCAAGTTTTCATTTGATA-CCACTATCAAAA-AAA----AGTACAAG---AATGATTAATTTCTT---A
gi|6 : GACAC-AGGT------ATACACGAGTTTACAGG-A-TATCGGAAA---TA--TCA-TAT-ATCGTCTGC-TCT-ACGTGTTCGGTAAAAAAAAAATGACGGAACAT---------------TACC-AAGTTGAACTGTGCG----GGG-AC---ACGTGG-----CT----------------AT----CT-AA-ATTGGTACTCATAGCTG-AA-T-T-----TC----G------------------CTTCCAA-AATT----CTTTTAATGTTGC-------TCA-TT-A---AC----------------CC-C-T-GTCTT-ATTTGAACTCCCAGTC-AGTTTGAGTTTTTGA-----ATT--TG---A------TGTT----T--TCAT-TTTTA--CGTA---C---A----TGTATCCATAAGCGTCAC-----------------------TTCAAA----AACA-------------TTA-ATTAAAT-TGTATT--TATTA
gi|7 : TCATATTTTAACCATA-GCACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTT-TGT-TT--TACTATTTTTATTCAAGAGAAAAA---------CATAATTAAA--GGAT---AAGAAAT-AAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAAGGAAAAACTGAAC--G----------------CAA----AGC--A-------TTTT-CCA-T-CAATTgagaaacta
gi|8 : aatTCATATTTTAACCAT---CACCTTTAATTAGTTGTCCAGTCCA-TT------------TCA-T--------------TC---ACCTGAACGCATAGCC-A--------TTTGGATATATATTAATA---T------TGTT----T--TCAT-TGTTA--CGTT---C---T----TGTATCCCTGTGCGTCATATCAAACACGTTAGTTAAAGCTTTTCAAT----AAGA-------------GAA-ACT-TTTGTGT-TTACTATTTTT---ATTCAAGAGA-AAA---------CATAATTAAA--GGAT---AAGAAAT-AAATCTTATTATCATAATTATTTTCTTCATG--GCGGTATCAAAGGAAAAACTGAAC--G----------------CAA----AGC--A-------TTTT-CCA-T-CAATTc
gi|9 : atATACACGAGTTTTCCGG-AATATCCGGTA---TAT-TAA-TTTTATTGTCTGC-TTTTACGAGTTCGATCGAAAAGAA---AT-GAACGT--TCCAGCAAGATCCT-TCGGAGATG-ACTCCGTGGTATGGGAAC---ACAAGAGCCATTTAGC-------------ATGGTTCTCAA-A-CGGTACTCTCGTTTGTAATTATAAA--TC----GTTGATAT-AC---AT-----------CATT-GCTACTTTCATTTCGCGGCCAATCCA-TTCAGTTATT---ATCA-T--A--ACT-CTT-TTCTG-ACGTATCCACACAGCCAA--------ATTTGA-----CTT--TA---A------TGAT----TGGTTAT-TTTTcgc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CATACGCACTAAACAGACAGAACACATTTTCTATTGAATGCGCCTTCCTTCTGCGATCAATTTCAACGCTGAATATAGAACGGGTTTTCTACCTCAATTTCATTGTATTCATTTGGTATTTTTGGTTTATTGCTATTTAAAAAAAAATAAGCACAAGCAAACGTTTAGAAGAAAA
Unaligned ( gi|15 ): CATTGTCCTAAGCACTCGGGATTAATTTTGTCAGGAAAGCCCCATGGTTTGAATTTCGCACTAATTATAGAACTGGAATTTCCACATAATCATTGTAAACAATGTTATATCAGTTTGCGGCTTACATGTATCCATTGCTACCAAATAT
Unaligned ( gi|19 ): ACAATTCTGATTGGATGAAAAATCAAACAAATGTTCGTCTGCACTAAGCAGTCGG