lowQualScore : 1 1111111 1 11111 1 1 1111 1 1 1 1 22 111 1 1 1111 2222 11 11 111111 1111 1111111111 1111 22222 11 111 111 11111
lowQualScore : 99 2 6 1 77 77 1 8888888 3 0 3 6 00000 0 0 2 2 4 3 7777 0 7 0 0 3 3 0 3 55 55 666 0 0 2 2 3 99 6 6 1 6 2 7777 6 1 99 0000 6 0 11 11 0 11 6 66 6 7 555555 8 6 2 3 1 2222 9999999999 6 0 7777 00000 99 8 8 6 333 000 77 0 4 77 4 66 4 4 66 11111 1
lowQualScore : .. . . . .. .. . ....... . . . . ..... . . . . . . .... . . . . . . . . .. .. ... . . . . . .. . . . . . .... . . .. .... . . .. .. . .. . .. . . ...... . . . . . .... .......... . . .... ..... .. . . . ... ... .. . . .. . .. . . .. ..... .
lowQualScore : 22 5 7 0 99 99 4 6666666 3 8 5 7 88888 5 0 5 5 0 2 8888 0 0 8 0 2 2 0 2 55 88 555 0 8 8 8 5 22 7 5 7 7 5 2222 7 7 22 2222 7 8 00 00 8 66 7 44 0 8 000000 0 7 5 7 7 1111 0000000000 2 8 8888 88888 00 0 0 7 111 000 99 4 4 99 4 33 4 4 11 11111 0
consensus : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTC-TTTCAA-------TATAACCGA-ATTTCAATATAAGC-GAAATT-AGTAACATGTCGACCGCAT-AGGAAGCTTGATCAAANTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCNTGTACCTG-CTTGTGT--AATTAGT-GTTACCA--ACCG---TGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCC-GAGGATT-GG-TTTCAATATAANCGATATTTCAATA----TAN---GCG---ATTTCAANTTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-ATTG---GGGATTT--ACTTTT-ACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGA--CT-----TCAATATAAGTGGAGTAAGCTGTAC
Reference ( gi|1 ) : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTC-TTTCAA-------TATAACCGA-ATTTCAATATAAGC-GAAATT-AGTGACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACACTTTT-CTTTTTTGAGGAGTAGCTAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTATACTCTTG-CATGCAGTGAAAACTAATCAAGTGAGAAATGAATTAAT--ACC-CCTCCATGTACCTG-CTTGTGT--ATTTAGT-GTTATCA--ACCA---TGACGA-TAGCTCGGCTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGTGGTCC-GAGAATT-GG-TTTCAATATAAGCGATATTTCAATA----TAT---GCG---ATTTCAATTTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTT-ATTTCAATATAAACGAT-A-TTTCA-AATTAA-GCGA--TT-----TCAATATAAGTGGAGTAAGCTGTAC
gi|3 : ACTCCGGATATAACATGAAATTCAGGG-ACCA--CC--TT--TTC-TTCAAA-------TATAACCGA-ATT-CAATA-AAGCCAAAATT-A-TAACATGTTGACC-CATCAGGAAGCTT-ATCAAAATTAG-GTCCAAATACAACGTTTTT-TCTTTTTGAGAGAT-GC-AG-TCCT-CTGAATTGATAAATTACATATCCAA-GC-GTAAAATTTGT--ATACCCCAGT--TATTA--CTCTTG-CATGCAGTGAAAACTAATCA---GAG-AATGAAATCAT--AAC-CCTCCATGTACCTGTCTTGT-TAAAATTAGT-GTTATCA--ACC----T-ACGATTAGCTC-ACTGA----GAC-TCAATA-AA-TGTTAT-AAAAACAACACATTA-CACCTTA
gi|17 : ACTCTGGATATAA--TGAAATTAAGGGGACCAACCT--TT--TTC-TTTCAA-------TATAACC
gi|13 : ACTCCAGATATAC--CAAAATCCAGGGGACCCACCTGATTTGTTA-TTACAAAATGTATTATAACCAA-
gi|2 : tTCCGGATATAA--TGAAATTCAGGT-ACCAACTT--TT--TTC-TTTCAG-------TATAACCGA-ATCTTCATATAAGC-TAAATTTAGTAACATGTTGACCACAT-AG-AAGCTTGATCCAAATTAGTGTCCAATGACAACGTTTTTTCTTTTTTAAGGAGTGGCTAGATCTTTCTGAATTGA--ATGTGCATCTCCAAAGCTGTAAAAGTTGTTTATACCCCAG-GTTATTAT-CTCTTGGCATGCAGTGAAAAC-AATCAGGTGAAAAACGA-TCAGT--ACTGCCTCCTTGTACCTG-CT-GTTT--AATTAGTTGTT-TCACAACCA---TGACGA-TAGCTCGGCTGAGG--GACTTCAAT-TAACCGTTATAAAAAAAAACACACTATCACTTCAGCGGTCCAGAG-ATT-GGTTTTCAATATAAGTGATATTTCAATA----CATAAGACGATAATTTC---TTAATCGA-A---TTATT----TGCA-AAA-GAAAAT-GG-GAGTCTGAG-A-TG---GGGATTT--ACTTTGAATTTC-ATATAAACAAT-ATTTTCA-AATTAA-GCGA--TT-----TCAATATAAGTAGAGTACGCTGTtgtta
gi|6 : TCCAGATATAA--TGAAATTCAGAGGACCAACCT--TT--TTC-AGTCAA-------TATAACCAA-ATTTCAATATAAGC-GAAATT-AGCAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTTCAATGACAATGTTTTT-CTTTTCTGAGGAGTAGCCAG-TCTTTTTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTTTACTCTTG-CATGCAGTGAAATCTAATCAGGTGAGAAAAGAAGCAAT--GCC-CCTCCTTGTA
gi|5 : aa--TGAGGTT--GGGGATTTAC-----T--TTCATTTCAA-------TATAAACGATATTTCAAATTAAGT-GA
gi|14 : tattgtcttttagtagaaccgcctgcttgtgtaattagtgttaccaaccgtgaagatagctcaactgaggggcttcaatataaccattataaaaacaacacattatcacctccgcggaccgaggattggtttcaatataagcaatatttcaatatatgtgatttcaatttaactgaattttatttgcaaagaaaatgagagat--TT--TTCATTTCAA-------TATAACAGATAGTTCAATTTAAAC-GAtttcaatataagtggagcaagctgtat
gi|4 : atttaAATAAAATG-GAAATC-TGTAACATGTCAACCAAAT-AGGAAGCTTGActtcagaataagcacgacaagtg
gi|4 : TCAAATTTAGTGTCCAATGACG---TTTTT-CTTTTTCGAGGAGTAGCCAT-TCTTTCTGAATTGATAATGCAAGTCTCCAA-GCTGTGAAAGTTGT----ACCCCCGTGTTATTTTACTCTTG-AATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCGTGTATCTG-CTTGTGT--AATTAGT-GTTACCA--ACCT---TGACGA-Tgacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgattaaaaacatcacattatcacctcagcggactgaggattgg
gi|11 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaattGAAAACTAATCAGGTGAGAAACGAATCAAG--GCC-CCTCCTTGTGCCCG-CTTGTGT--AATTGGC-GTTACCA--ACCG---TGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAtaaaaacatcacattatcacctcagcggactgaggattgg
gi|7 : AAATTAATCAATGGACA-CTTTTATAT--TTA-TCTGTGT--AATTA-T-GAGGTCA--ACCAGCGTGACGA-C--TTCCATTAAGGATGACTTCAATATAACCGCTAT-AAAAACAATACATT-----CTCAGCAACC--------T-GA-TTTCCAAATCATCGACATTTCAAGA----TAA---ATG---ATTTCAGATTAACCGA-C-ATTCATTCTCACGC--AAA-AAGTAC-GA-GAAACTGAA-ATTA---TGGA
gi|5 : CCTG-CTTGTGT--AATTAGT-GTTACCA--ACCG---TGAAGA-TAGCTCAACTGAGG--GGCTTCAATATAACCATTAT-AAAAACAACACATTATCACCTCCGCGGACC-GAGGATT-GG-TTTCAATATAAGCAATATTTCAATA----TAT---GTG---ATTTCAATTTAACTGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGATTGAG-GTTG---GGGATTT--ACTTTC-ATTTCAATATAAACGAT-A-TTTCA-AATTAA-GTGA--TT-----TCAATATAAGTGGAGCAAGCTGTAgt
gi|4 : tattgtcttttagtagaaccgT-AAAAACATCACATTATCACCTCAGCGGACT-GAGGATT-GG-t
gi|8 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgatCC-AAAAACTCGG-TTTAAATA-AAGC-ATATT-CAATACTATTGT---GC----ATTTCAATT-AACCGA-ACTTTTATT----TGCTCATATGAAAAT-GACGAGACTGAG--TTG---GGGATTTCTACTTTT-ATTTCA-TAAAACCGAT-A-TTTCACAATTAAAGCGAATTTCAAACTCAATATAAGTGGAGTAAGCTGTAC
gi|14 : ca-TTTCAATATAACAGATAGTTCAATT----TAA---ACG---ACTTCA
gi|6 : atttattttcaTCAATATAACCAA-ATTTCAATA----TAA---GCG---Agaataagcacgacaagtg
gi|9 : aatccagatataatgaaattcagaggaccaacctttttcagTCGATA----TAA---ACA---ATCTCAAATTAACTGACA-TTTTAGT-----GC--AAA-GAAAAAAGG-GAAAATGAACGTTGTAGGGGAATT--ATATTT-ATTACAAGTTGAGAGAT-A-TTTCA-AAAACA-CCAA--TT-----CCATTATAAGTGGAGTAAGCTaattagcaacatgttgaccgcataggaagcttgatcaaatttagtgttcaatgacaatgtttttcttttctgaggagtagccagtctttttgaattgataatgtacatctccaagctgtaaaagttgttataccccagtgttattttactcttgcatgcagtgaaatctaatcaggtgagaaaagaagcaatgcccctccttgta
gi|12 : -GGGACTGAG-ACAA---GGAATTT--TGTTTT-ACTTCAAAATAAGCGATAA-ATTCA-AAATAA-GCAA--CT-----TCAA---AAGTGGTGTAAGGTGTGCagctgtgtaaccatatta
gi|10 : TTG---GGGATTT--ATTTTC-ACATCAACA---ATCAT-A-TAACA-AAT-AA-GCAA--CT-----TCAATATATATGAAGTGAACTGTACtt
gi|14 : ctgttttatatttcagttgataaatgctgaatttgaaaattaATTT--ATTTTC-ATTTCAATATAACAGAT-A-GTTCA-ATTTAA-ACGA--CT-----TCAGAATAAGttgttaaa
gi|16 : TTTT-ACTTCAGTATAACAAAT-A-GTTCA-ATTTAA-GCAA--TA-----TCAACATAAATGGAGTAGACTGTcacgacaagtg
gi|15 : TTTT-ACTTCGGTGTAACAGAT-A-GTTCA-TTATAA-GTGA--CT-----TCAGTATAAGTGGGATACACTGT
Alignments
lowQualScore : 2222222 11 1111 1111111 111111 1111 11111 11 1111111
lowQualScore : 99 6 99 99 1111111 3 6 8 8 2 6 8 1 0 0 8 8 0 0 8 0 88 0 8 0 8 1 1 77 5 1 5 0 77 5 5 5555 5 5 99 5 3 1 3 6 0 1 3 4444444 1 444444 9 1111 55555 55 6 6 5 77 888 66 0 1 4 44 4 4 0 3333333
lowQualScore : .. . .. .. ....... . . . . . . . . . . . . . . . . .. . . . . . . .. . . . . .. . . .... . . .. . . . . . . . . ....... . ...... . .... ..... .. . . . .. ... .. . . . .. . . . .......
lowQualScore : 22 7 22 22 7777777 2 0 0 0 8 4 0 0 8 8 0 0 8 8 0 8 66 8 8 8 0 0 7 99 7 0 7 7 99 7 7 3333 7 2 22 7 2 0 2 7 8 0 2 3333333 0 777777 8 8888 88888 88 7 7 7 88 888 99 5 0 0 88 0 0 5 0000000
consensus : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCAA-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
Reference ( family-2171 ) : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTCGACCGCAT-AGGAAGCTTGATCAAANTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCNTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAANCGATATTTCAAT--A----TANG-CG---ATTTCAANTTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-ATTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|1 : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTGACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACACTTTT-CTTTTTTGAGGAGTAGCTAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTATACTCTTG-CATGCAGTGAAAACTAATCAAGTGAGAAATGAATTAAT--ACC-CCTCCATGTACCTG-CTTGTGT--ATTTAGT-GTTAT-CAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGTGGTCCGAGAATTGG-TTTCAATATAAGCGATATTTCAAT--A----TATG-CG---ATTTCAATTTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTATTTCAATATAAACGAT-A-TTTCA-AATTAA-GCGATTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|10 : -ATTG---GGGATTT--ATTTTCACATCAACA--ATC-AT-A-TAACA-AAT-AA-GCAACTT-------CAATATATATGAAGTGAACTGTAC
gi|11 : ctgttttatatttcagttgataaatgctgaatttgaaaattGAAAACTAATCAGGTGAGAAACGAATCAAG--GCC-CCTCCTTGTGCCCG-CTTGTGT--AATTGGC-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAttgttaaa
gi|12 : -GGGACTGAG-ACAA---GGAATTT--TGTTTTACTTCAAAATAAGCGATAA-ATTCA-AAATAA-GCAACTT-------CAA---AAGTGGTGTAAGGTGTGC
gi|13 : ACTCCAGATATAC--CAAAATCCAGGGGACCCACCTGATTTGTTATTACAAAATGTATTATAACCAAtt
gi|14 : tATTT--ATTTTCATTTCAATATAACAGAT-A-GTTCA-ATTTAA-ACGACTT-------CAGAATAAGtgtta
gi|15 : TTTTACTTCGGTGTAACAGAT-A-GTTCA-TTATAA-GTGACTT-------CAGTATAAGTGGGATACACTGTcacgacaagtg
gi|16 : TTTTACTTCAGTATAACAAAT-A-GTTCA-ATTTAA-GCAATAT-------CAACATAAATGGAGTAGACTGT
gi|17 : ACTCTGGATATAA--TGAAATTAAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACC
gi|2 : TCCGGATATAA--TGAAATTCAGGT-ACCAACTT--TT--TTCTTTCAG-------TATAACCGAATCTTCATATAAGC-TAAATTTAGTAACATGTTGACCACAT-AG-AAGCTTGATCCAAATTAGTGTCCAATGACAACGTTTTTTCTTTTTTAAGGAGTGGCTAGATCTTTCTGAATTGA--ATGTGCATCTCCAAAGCTGTAAAAGTTGTTTATACCCCAG-GTTATTAT-CTCTTGGCATGCAGTGAAAAC-AATCAGGTGAAAAACGA-TCAGT--ACTGCCTCCTTGTACCTG-CT-GTTT--AATTAGTTGTTTCACAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAAT-TAACCGTTATAAAAAAAAACACACTATCACTTCAGCGGTCCAGAGATTGGTTTTCAATATAAGTGATATTTCAATACA----TAAGACGATAATTTC---TTAATCGA-A---TTATT----TGCA-AAA-GAAAAT-GG-GAGTCTGAG-A-TG---GGGATTT--ACTTTGAATTTCATATAAACAAT-ATTTTCA-AATTAA-GCGATTT-------CAATATAAGTAGAGTACGCTGT
gi|3 : ACTCCGGATATAACATGAAATTCAGGG-ACCA--CC--TT--TTCTTCAAA-------TATAACCGAATT-CAATA-AAGCCAAAATT-A-TAACATGTTGACC-CATCAGGAAGCTT-ATCAAAATTAG-GTCCAAATACAACGTTTTT-TCTTTTTGAGAGATG--CAG-TCCT-CTGAATTGATAAATTACATATCCAA-GC-GTAAAATTTGT--ATACCCCAGT--TATT--ACTCTTG-CATGCAGTGAAAACTAATCA---GAGAATGAAATC-AT--AAC-CCTCCATGTACCTGTCTTGT-TAAAATTAGT-GTTAT-CAACC----T-ACGATTAGCTC-ACTGA----GAC-TCAATA-AA-TGTTAT-AAAAACAACACATTA-CACCTTA
gi|4 : AATAAAATG-GAAATC-TGTAACATGTCAACCAAAT-AGGAAGCTTGA
gi|4 : TCAAATTTAGTGTCCAATGAC---GTTTTT-CTTTTTCGAGGAGTAGCCAT-TCTTTCTGAATTGATAATGCAAGTCTCCAA-GCTGTGAAAGTTGT----ACCCCCGTGTTATTTTACTCTTG-AATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCGTGTATCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---TTGACGA-Tgacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgattaaaaacatcacattatcacctcagcggactgaggattgg
gi|4 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaattT-AAAAACATCACATTATCACCTCAGCGGACTGAGGATTGG-taaaaacatcacattatcacctcagcggactgaggattgg
gi|5 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgatCCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGAAGA-TAGCTCAACTGAGG--GGCTTCAATATAACCATTAT-AAAAACAACACATTATCACCTCCGCGGACCGAGGATTGG-TTTCAATATAAGCAATATTTCAAT--A----TATG-TG---ATTTCAATTTAACTGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGATTGAG-GTTG---GGGATTT--ACTTTCATTTCAATATAAACGAT-A-TTTCA-AATTAA-GTGATTT-------CAATATAAGTGGAGCAAGCTGTA
gi|6 : tattgtcttttagtagaaccgTCCAGATATAA--TGAAATTCAGAGGACCAACCT--TT--TTCAGTCAA-------TATAACCAAATTTCAATATAAGC-GAAATT-AGCAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTTCAATGACAATGTTTTT-CTTTTCTGAGGAGTAGCCAG-TCTTTTTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTTTACTCTTG-CATGCAGTGAAATCTAATCAGGTGAGAAAAGAAGCAAT--GCC-CCTCCTTGTAt
gi|7 : aaAAATTAATCAATGGACA-CTT--TTATATTTA-TCTGTGT--AATTA-T-GAGGT-CAACCAGCGTGACGA-C--TTCCATTAAGGATGACTTCAATATAACCGCTAT-AAAAACAATACATT-----CTCAGCAACCTGA--------TTTCCAAATCATCGACATTTCAAG--A----TAAA-TG---ATTTCAGATTAACCGA-C-ATTCATTCTCACGC--AAA-AAGTAC-GA-GAAACTGAA-ATTA---TGGA
gi|8 : TCGG-TTTAAATA-AAGC-ATATT-CAAT--ACTATTGTG-C----ATTTCAA-TTAACCGA-ACTTTTATT----TGCTCATATGAAAAT-GACGAGACTGAG--TTG---GGGATTTCTACTTTTATTTCA-TAAAACCGAT-A-TTTCACAATTAAAGCGAATTTCAAACTCAATATAAGTGGAGTAAGCTGTACgt
gi|9 : caccaaaaacTCGAT--A----TAAA-CA---ATCTCAAATTAACTGACA-TTTTAGT-----GC--AAA-GAAAAAAGG-GAAAATGAACGTTGTAGGGGAATT--ATATTTATTACAAGTTGAGAGAT-A-TTTCA-AAAACA-CCAATTC-------CATTATAAGTGGAGTAAGCT
Alignments
lowQualScore : 2222222 11 1111 1111111 111111 222 1111 11111 11 1111111
lowQualScore : 99 6 99 99 1111111 3 6 8 8 6 8 1 0 0 8 8 0 0 8 0 88 0 8 0 8 1 1 77 5 1 5 0 77 5 5 5555 5 5 99 5 3 1 3 6 0 3 4444444 1 444444 111 1111 55555 55 6 6 5 99 888 66 0 1 4 44 4 4 0 3333333
lowQualScore : .. . .. .. ....... . . . . . . . . . . . . . . . .. . . . . . . .. . . . . .. . . .... . . .. . . . . . . . ....... . ...... ... .... ..... .. . . . .. ... .. . . . .. . . . .......
lowQualScore : 22 7 22 22 7777777 2 0 0 0 4 0 4 8 8 0 0 8 8 0 8 66 8 8 8 0 0 7 99 7 9 7 7 99 7 7 3333 7 2 22 7 2 0 2 7 8 2 3333333 0 777777 777 8888 88888 88 7 7 7 77 888 99 5 0 0 88 0 0 5 0000000
consensus : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
Reference ( family-2171 ) : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|1 : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTGACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACACTTTT-CTTTTTTGAGGAGTAGCTAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTATACTCTTG-CATGCAGTGAAAACTAATCAAGTGAGAAATGAATTAAT--ACC-CCTCCATGTACCTG-CTTGTGT--ATTTAGT-GTTAT-CAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGTGGTCCGAGAATTGG-TTTCAATATAAGCGATATTTCAAT--A----TATG-CG---ATTTCA-ATTTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTATTTCAATATAAACGAT-A-TTTCA-AATTAA-GCGATTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|10 : TTG---GGGATTT--ATTTTCACATCAACA--ATC-AT-A-TAACA-AAT-AA-GCAACTT-------CAATATATATGAAGTGAACTGTAC
gi|11 : ctgttttatatttcagttgataaatgctgaatttgaaaattaGAAAACTAATCAGGTGAGAAACGAATCAAG--GCC-CCTCCTTGTGCCCG-CTTGTGT--AATTGGC-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAttgttaaa
gi|12 : -GGGACTGAG-ACAA---GGAATTT--TGTTTTACTTCAAAATAAGCGATAA-ATTCA-AAATAA-GCAACTT-------CAA---AAGTGGTGTAAGGTGTGC
gi|13 : ACTCCAGATATAC--CAAAATCCAGGGGACCCACCTGATTTGTTATTACAAAATGTATTATAACCAAtt
gi|14 : tATTT--ATTTTCATTTCAATATAACAGAT-A-GTTCA-ATTTAA-ACGACTT-------CAGAATAAGtgtta
gi|15 : TTTTACTTCGGTGTAACAGAT-A-GTTCA-TTATAA-GTGACTT-------CAGTATAAGTGGGATACACTGTcacgacaagtg
gi|16 : TTTTACTTCAGTATAACAAAT-A-GTTCA-ATTTAA-GCAATAT-------CAACATAAATGGAGTAGACTGT
gi|17 : ACTCTGGATATAA--TGAAATTAAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACC
gi|2 : TCCGGATATAA--TGAAATTCAGGT-ACCAACTT--TT--TTCTTTCAG-------TATAACCGAATCTTCATATAAGC-TAAATTTAGTAACATGTTGACCACAT-AG-AAGCTTGATCCAAATTAGTGTCCAATGACAACGTTTTTTCTTTTTTAAGGAGTGGCTAGATCTTTCTGAATTGA--ATGTGCATCTCCAAAGCTGTAAAAGTTGTTTATACCCCAG-GTTATTAT-CTCTTGGCATGCAGTGAAAAC-AATCAGGTGAAAAACGA-TCAGT--ACTGCCTCCTTGTACCTG-CT-GTTT--AATTAGTTGTTTCACAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAAT-TAACCGTTATAAAAAAAAACACACTATCACTTCAGCGGTCCAGAGATTGGTTTTCAATATAAGTGATATTTCAATACA----TAAGACGATAATTTC----TTAATCGA-A---TTATT----TGCA-AAA-GAAAAT-GG-GAGTCTGAG-A-TG---GGGATTT--ACTTTGAATTTCATATAAACAAT-ATTTTCA-AATTAA-GCGATTT-------CAATATAAGTAGAGTACGCTGT
gi|3 : ACTCCGGATATAACATGAAATTCAGGG-ACCA--CC--TT--TTCTTCAAA-------TATAACCGAATT-CAATA-AAGCCAAAATT-A-TAACATGTTGACC-CATCAGGAAGCTT-ATCAAAATTAG-GTCCAAATACAACGTTTTT-TCTTTTTGAGAGATG--CAG-TCCT-CTGAATTGATAAATTACATATCCAA-GC-GTAAAATTTGT--ATACCCCAGT--TATT--ACTCTTG-CATGCAGTGAAAACTAATCA---GAGAATGAAATC-AT--AAC-CCTCCATGTACCTGTCTTGT-TAAAATTAGT-GTTAT-CAACC----T-ACGATTAGCTC-ACTGA----GAC-TCAATA-AA-TGTTAT-AAAAACAACACATTA-CACCTTA
gi|4 : AATAAAATG-GAAATC-TGTAACATGTCAACCAAAT-AGGAAGCTTGA
gi|4 : TCAAATTTAGTGTCCAATGAC---GTTTTT-CTTTTTCGAGGAGTAGCCAT-TCTTTCTGAATTGATAATGCAAGTCTCCAA-GCTGTGAAAGTTGT----ACCCCCGTGTTATTTTACTCTTG-AATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCGTGTATCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---TTGACGA-Tgacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgattaaaaacatcacattatcacctcagcggactgaggattgg
gi|4 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaattT-AAAAACATCACATTATCACCTCAGCGGACTGAGGATTGG-taaaaacatcacattatcacctcagcggactgaggattgg
gi|5 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgatCCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGAAGA-TAGCTCAACTGAGG--GGCTTCAATATAACCATTAT-AAAAACAACACATTATCACCTCCGCGGACCGAGGATTGG-TTTCAATATAAGCAATATTTCAAT--A----TATG-TG---ATTTCA-ATTTAACTGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGATTGAG-GTTG---GGGATTT--ACTTTCATTTCAATATAAACGAT-A-TTTCA-AATTAA-GTGATTT-------CAATATAAGTGGAGCAAGCTGTA
gi|6 : tattgtcttttagtagaaccgTCCAGATATAA--TGAAATTCAGAGGACCAACCT--TT--TTCAGTCAA-------TATAACCAAATTTCAATATAAGC-GAAATT-AGCAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTTCAATGACAATGTTTTT-CTTTTCTGAGGAGTAGCCAG-TCTTTTTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTTTACTCTTG-CATGCAGTGAAATCTAATCAGGTGAGAAAAGAAGCAAT--GCC-CCTCCTTGTAt
gi|7 : aaAAATTAATCAATGGACA-CTT--TTATATTTA-TCTGTGT--AATTA-T-GAGGT-CAACCAGCGTGACGA-C--TTCCATTAAGGATGACTTCAATATAACCGCTAT-AAAAACAATACATT-----CTCAGCAACC-------TGA-TTTCCAAATCATCGACATTTCAAG--A----TAAA-TG---ATTTCAGA-TTAACCGA-C-ATTCATTCTCACGC--AAA-AAGTAC-GA-GAAACTGAA-ATTA---TGGA
gi|8 : TCGG-TTTAAATA-AAGC-ATATT-CAAT--ACTATTGTG-C----ATTTCA-A-TTAACCGA-ACTTTTATT----TGCTCATATGAAAAT-GACGAGACTGAG--TTG---GGGATTTCTACTTTTATTTCA-TAAAACCGAT-A-TTTCACAATTAAAGCGAATTTCAAACTCAATATAAGTGGAGTAAGCTGTACgt
gi|9 : caccaaaaacTCGAT--A----TAAA-CA---ATCTCA-AATTAACTGACA-TTTTAGT-----GC--AAA-GAAAAAAGG-GAAAATGAACGTTGTAGGGGAATT--ATATTTATTACAAGTTGAGAGAT-A-TTTCA-AAAACA-CCAATTC-------CATTATAAGTGGAGTAAGCT
Alignments
lowQualScore : 2222222 11 1111 1111111 111111 222 1111 11111 11 1111111
lowQualScore : 99 6 99 99 1111111 3 6 8 8 6 8 1 0 0 8 8 0 0 8 0 88 0 8 0 8 1 1 77 5 1 5 0 77 5 5 5555 5 5 99 5 3 1 3 6 0 3 4444444 1 444444 111 1111 55555 55 6 6 5 99 888 66 0 1 4 44 4 4 0 3333333
lowQualScore : .. . .. .. ....... . . . . . . . . . . . . . . . .. . . . . . . .. . . . . .. . . .... . . .. . . . . . . . ....... . ...... ... .... ..... .. . . . .. ... .. . . . .. . . . .......
lowQualScore : 22 7 22 22 7777777 2 0 0 0 4 0 4 8 8 0 0 8 8 0 8 66 8 8 8 0 0 7 99 7 9 7 7 99 7 7 3333 7 2 22 7 2 0 2 7 8 2 3333333 0 777777 777 8888 88888 88 7 7 7 77 888 99 5 0 0 88 0 0 5 0000000
consensus : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
Reference ( family-2171 ) : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|1 : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTGACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACACTTTT-CTTTTTTGAGGAGTAGCTAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTATACTCTTG-CATGCAGTGAAAACTAATCAAGTGAGAAATGAATTAAT--ACC-CCTCCATGTACCTG-CTTGTGT--ATTTAGT-GTTAT-CAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGTGGTCCGAGAATTGG-TTTCAATATAAGCGATATTTCAAT--A----TATG-CG---ATTTCA-ATTTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTATTTCAATATAAACGAT-A-TTTCA-AATTAA-GCGATTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|10 : TTG---GGGATTT--ATTTTCACATCAACA--ATC-AT-A-TAACA-AAT-AA-GCAACTT-------CAATATATATGAAGTGAACTGTAC
gi|11 : ctgttttatatttcagttgataaatgctgaatttgaaaattaGAAAACTAATCAGGTGAGAAACGAATCAAG--GCC-CCTCCTTGTGCCCG-CTTGTGT--AATTGGC-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAttgttaaa
gi|12 : -GGGACTGAG-ACAA---GGAATTT--TGTTTTACTTCAAAATAAGCGATAA-ATTCA-AAATAA-GCAACTT-------CAA---AAGTGGTGTAAGGTGTGC
gi|13 : ACTCCAGATATAC--CAAAATCCAGGGGACCCACCTGATTTGTTATTACAAAATGTATTATAACCAAtt
gi|14 : tATTT--ATTTTCATTTCAATATAACAGAT-A-GTTCA-ATTTAA-ACGACTT-------CAGAATAAGtgtta
gi|15 : TTTTACTTCGGTGTAACAGAT-A-GTTCA-TTATAA-GTGACTT-------CAGTATAAGTGGGATACACTGTcacgacaagtg
gi|16 : TTTTACTTCAGTATAACAAAT-A-GTTCA-ATTTAA-GCAATAT-------CAACATAAATGGAGTAGACTGT
gi|17 : ACTCTGGATATAA--TGAAATTAAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACC
gi|2 : TCCGGATATAA--TGAAATTCAGGT-ACCAACTT--TT--TTCTTTCAG-------TATAACCGAATCTTCATATAAGC-TAAATTTAGTAACATGTTGACCACAT-AG-AAGCTTGATCCAAATTAGTGTCCAATGACAACGTTTTTTCTTTTTTAAGGAGTGGCTAGATCTTTCTGAATTGA--ATGTGCATCTCCAAAGCTGTAAAAGTTGTTTATACCCCAG-GTTATTAT-CTCTTGGCATGCAGTGAAAAC-AATCAGGTGAAAAACGA-TCAGT--ACTGCCTCCTTGTACCTG-CT-GTTT--AATTAGTTGTTTCACAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAAT-TAACCGTTATAAAAAAAAACACACTATCACTTCAGCGGTCCAGAGATTGGTTTTCAATATAAGTGATATTTCAATACA----TAAGACGATAATTTC----TTAATCGA-A---TTATT----TGCA-AAA-GAAAAT-GG-GAGTCTGAG-A-TG---GGGATTT--ACTTTGAATTTCATATAAACAAT-ATTTTCA-AATTAA-GCGATTT-------CAATATAAGTAGAGTACGCTGT
gi|3 : ACTCCGGATATAACATGAAATTCAGGG-ACCA--CC--TT--TTCTTCAAA-------TATAACCGAATT-CAATA-AAGCCAAAATT-A-TAACATGTTGACC-CATCAGGAAGCTT-ATCAAAATTAG-GTCCAAATACAACGTTTTT-TCTTTTTGAGAGATG--CAG-TCCT-CTGAATTGATAAATTACATATCCAA-GC-GTAAAATTTGT--ATACCCCAGT--TATT--ACTCTTG-CATGCAGTGAAAACTAATCA---GAGAATGAAATC-AT--AAC-CCTCCATGTACCTGTCTTGT-TAAAATTAGT-GTTAT-CAACC----T-ACGATTAGCTC-ACTGA----GAC-TCAATA-AA-TGTTAT-AAAAACAACACATTA-CACCTTA
gi|4 : AATAAAATG-GAAATC-TGTAACATGTCAACCAAAT-AGGAAGCTTGA
gi|4 : TCAAATTTAGTGTCCAATGAC---GTTTTT-CTTTTTCGAGGAGTAGCCAT-TCTTTCTGAATTGATAATGCAAGTCTCCAA-GCTGTGAAAGTTGT----ACCCCCGTGTTATTTTACTCTTG-AATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCGTGTATCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---TTGACGA-Tgacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgattaaaaacatcacattatcacctcagcggactgaggattgg
gi|4 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaattT-AAAAACATCACATTATCACCTCAGCGGACTGAGGATTGG-taaaaacatcacattatcacctcagcggactgaggattgg
gi|5 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgatCCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGAAGA-TAGCTCAACTGAGG--GGCTTCAATATAACCATTAT-AAAAACAACACATTATCACCTCCGCGGACCGAGGATTGG-TTTCAATATAAGCAATATTTCAAT--A----TATG-TG---ATTTCA-ATTTAACTGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGATTGAG-GTTG---GGGATTT--ACTTTCATTTCAATATAAACGAT-A-TTTCA-AATTAA-GTGATTT-------CAATATAAGTGGAGCAAGCTGTA
gi|6 : tattgtcttttagtagaaccgTCCAGATATAA--TGAAATTCAGAGGACCAACCT--TT--TTCAGTCAA-------TATAACCAAATTTCAATATAAGC-GAAATT-AGCAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTTCAATGACAATGTTTTT-CTTTTCTGAGGAGTAGCCAG-TCTTTTTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTTTACTCTTG-CATGCAGTGAAATCTAATCAGGTGAGAAAAGAAGCAAT--GCC-CCTCCTTGTAt
gi|7 : aaAAATTAATCAATGGACA-CTT--TTATATTTA-TCTGTGT--AATTA-T-GAGGT-CAACCAGCGTGACGA-C--TTCCATTAAGGATGACTTCAATATAACCGCTAT-AAAAACAATACATT-----CTCAGCAACC-------TGA-TTTCCAAATCATCGACATTTCAAG--A----TAAA-TG---ATTTCAGA-TTAACCGA-C-ATTCATTCTCACGC--AAA-AAGTAC-GA-GAAACTGAA-ATTA---TGGA
gi|8 : TCGG-TTTAAATA-AAGC-ATATT-CAAT--ACTATTGTG-C----ATTTCA-A-TTAACCGA-ACTTTTATT----TGCTCATATGAAAAT-GACGAGACTGAG--TTG---GGGATTTCTACTTTTATTTCA-TAAAACCGAT-A-TTTCACAATTAAAGCGAATTTCAAACTCAATATAAGTGGAGTAAGCTGTACgt
gi|9 : caccaaaaacTCGAT--A----TAAA-CA---ATCTCA-AATTAACTGACA-TTTTAGT-----GC--AAA-GAAAAAAGG-GAAAATGAACGTTGTAGGGGAATT--ATATTTATTACAAGTTGAGAGAT-A-TTTCA-AAAACA-CCAATTC-------CATTATAAGTGGAGTAAGCT
blockSeqs : CA G GA TG AATGTAT T T C T A C A T A A TT A G G C GG G T T AA T A AGCG T G AT A T T C T G ACTAT A ACGATA AT ACT CTCAC TC T A C CG TAG CT T A TT C A TCAAACT
blockSeqs : . G . . . T A . . A . A . . . T T . G C . . T . . . . G . G . . T A T . A ACA T TG GA CAT T A . . . A . . G . T . . .
blockSeqs : . G . . . . T . . G . T . . . . T . G G . . A . . . . A . A . . T A C . G A A TG AA AT T . . . . A . . C . A . . .
blockSeqs : . . . . . . . . . . T . . . . . . G C . . G . . . . T . C . . . C . . . A T CA A CA T . . . . G . . C . G . . .
blockSeqs : . . . . . . A . . T . . . . G . . . . . . A A C . A . . . . . A . . C . G . . .
blockSeqs : T . . T . . . . . . . . . . . A . G . . .
blockSeqs : . . A . T . . .
blockSeqs : C . T . . .
blockSeqs : G . T . . .
blockSeqCons : T* AT**
originalCons : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
finalCons : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGAAT--TTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
Alignments
lowQualScore : 2222222 11 1111 1111111 111111 222 1111 11111 11 1111111
lowQualScore : 99 6 99 99 1111111 3 6 8 8 6 8 1 0 0 8 8 0 0 8 0 88 0 8 0 8 1 1 77 5 1 5 0 77 5 5 5555 5 5 99 5 3 1 3 6 0 3 4444444 1 444444 111 1111 55555 55 6 6 5 99 888 66 0 1 4 44 4 4 0 3333333
lowQualScore : .. . .. .. ....... . . . . . . . . . . . . . . . .. . . . . . . .. . . . . .. . . .... . . .. . . . . . . . ....... . ...... ... .... ..... .. . . . .. ... .. . . . .. . . . .......
lowQualScore : 22 7 22 22 7777777 2 0 0 0 4 0 4 8 8 0 0 8 8 0 8 66 8 8 8 0 0 7 99 7 9 7 7 99 7 7 3333 7 2 22 7 2 0 2 7 8 2 3333333 0 777777 777 8888 88888 88 7 7 7 77 888 99 5 0 0 88 0 0 5 0000000
consensus : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
Reference ( family-2171 ) : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACGTTTTT-CTTTTTTGAGGAGTAGCCAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTNTACTCTTG-CATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCTTGTACCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGCGGNCCGAGGATTGG-TTTCAATATAAGCGATATTTCAAT--A----TANG-CG---ATTTCA-A-TTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTACTTCAATATAANCGAT-A-TTTCA-AATTAA-GCGACTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|1 : ACTCCGGATATAA--TGAAATTCAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACCGAATTTCAATATAAGC-GAAATT-AGTGACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTCCAATGACAACACTTTT-CTTTTTTGAGGAGTAGCTAG-TCTTTCTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTATACTCTTG-CATGCAGTGAAAACTAATCAAGTGAGAAATGAATTAAT--ACC-CCTCCATGTACCTG-CTTGTGT--ATTTAGT-GTTAT-CAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAATATAACCGTTAT-AAAAACAACACATTATCACCTCAGTGGTCCGAGAATTGG-TTTCAATATAAGCGATATTTCAAT--A----TATG-CG---ATTTCA-ATTTAACCGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGACTGAG-GTTG---GGGATTT--ACTTTTATTTCAATATAAACGAT-A-TTTCA-AATTAA-GCGATTT-------CAATATAAGTGGAGTAAGCTGTAC
gi|10 : TTG---GGGATTT--ATTTTCACATCAACA--ATC-AT-A-TAACA-AAT-AA-GCAACTT-------CAATATATATGAAGTGAACTGTAC
gi|11 : ctgttttatatttcagttgataaatgctgaatttgaaaattaGAAAACTAATCAGGTGAGAAACGAATCAAG--GCC-CCTCCTTGTGCCCG-CTTGTGT--AATTGGC-GTTAC-CAACC---GTGACGA-TAGCTCGACTGAGG--GACTTCAATATAACCGTTAT-AAAttgttaaa
gi|12 : -GGGACTGAG-ACAA---GGAATTT--TGTTTTACTTCAAAATAAGCGATAA-ATTCA-AAATAA-GCAACTT-------CAA---AAGTGGTGTAAGGTGTGC
gi|13 : ACTCCAGATATAC--CAAAATCCAGGGGACCCACCTGATTTGTTATTACAAAATGTATTATAACCAAtt
gi|14 : tATTT--ATTTTCATTTCAATATAACAGAT-A-GTTCA-ATTTAA-ACGACTT-------CAGAATAAGtgtta
gi|15 : TTTTACTTCGGTGTAACAGAT-A-GTTCA-TTATAA-GTGACTT-------CAGTATAAGTGGGATACACTGTcacgacaagtg
gi|16 : TTTTACTTCAGTATAACAAAT-A-GTTCA-ATTTAA-GCAATAT-------CAACATAAATGGAGTAGACTGT
gi|17 : ACTCTGGATATAA--TGAAATTAAGGGGACCAACCT--TT--TTCTTTCAA-------TATAACC
gi|2 : TCCGGATATAA--TGAAATTCAGGT-ACCAACTT--TT--TTCTTTCAG-------TATAACCGAATCTTCATATAAGC-TAAATTTAGTAACATGTTGACCACAT-AG-AAGCTTGATCCAAATTAGTGTCCAATGACAACGTTTTTTCTTTTTTAAGGAGTGGCTAGATCTTTCTGAATTGA--ATGTGCATCTCCAAAGCTGTAAAAGTTGTTTATACCCCAG-GTTATTAT-CTCTTGGCATGCAGTGAAAAC-AATCAGGTGAAAAACGA-TCAGT--ACTGCCTCCTTGTACCTG-CT-GTTT--AATTAGTTGTTTCACAACC---ATGACGA-TAGCTCGGCTGAGG--GACTTCAAT-TAACCGTTATAAAAAAAAACACACTATCACTTCAGCGGTCCAGAGATTGGTTTTCAATATAAGTGATATTTCAATACA----TAAGACGATAATTTC----TTAATCGA-A---TTATT----TGCA-AAA-GAAAAT-GG-GAGTCTGAG-A-TG---GGGATTT--ACTTTGAATTTCATATAAACAAT-ATTTTCA-AATTAA-GCGATTT-------CAATATAAGTAGAGTACGCTGT
gi|3 : ACTCCGGATATAACATGAAATTCAGGG-ACCA--CC--TT--TTCTTCAAA-------TATAACCGAATT-CAATA-AAGCCAAAATT-A-TAACATGTTGACC-CATCAGGAAGCTT-ATCAAAATTAG-GTCCAAATACAACGTTTTT-TCTTTTTGAGAGATG--CAG-TCCT-CTGAATTGATAAATTACATATCCAA-GC-GTAAAATTTGT--ATACCCCAGT--TATT--ACTCTTG-CATGCAGTGAAAACTAATCA---GAGAATGAAATC-AT--AAC-CCTCCATGTACCTGTCTTGT-TAAAATTAGT-GTTAT-CAACC----T-ACGATTAGCTC-ACTGA----GAC-TCAATA-AA-TGTTAT-AAAAACAACACATTA-CACCTTA
gi|4 : AATAAAATG-GAAATC-TGTAACATGTCAACCAAAT-AGGAAGCTTGA
gi|4 : TCAAATTTAGTGTCCAATGAC---GTTTTT-CTTTTTCGAGGAGTAGCCAT-TCTTTCTGAATTGATAATGCAAGTCTCCAA-GCTGTGAAAGTTGT----ACCCCCGTGTTATTTTACTCTTG-AATGCAGTGAAAACTAATCAGGTGAGAAACGAATCAAT--ACC-CCTCCGTGTATCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---TTGACGA-Tgacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgattaaaaacatcacattatcacctcagcggactgaggattgg
gi|4 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaattT-AAAAACATCACATTATCACCTCAGCGGACTGAGGATTGG-taaaaacatcacattatcacctcagcggactgaggattgg
gi|5 : aataaaatggaaatctgtaacatgtcaaccaaataggaagcttgagacaatcgctgtgtaatgtgtatgtagtcaatgtctaatttcaaatttagtgtccaatgacgtttttctttttcgaggagtagccattctttctgaattgataatgcaagtctccaagctgtgaaagttgtacccccgtgttattttactcttgaatgcagtgaaaactaatcaggtgagaaacgaatcaatacccctccgtgtatctgcttgtgtaattagtgttaccaaccttgacgatCCTG-CTTGTGT--AATTAGT-GTTAC-CAACC---GTGAAGA-TAGCTCAACTGAGG--GGCTTCAATATAACCATTAT-AAAAACAACACATTATCACCTCCGCGGACCGAGGATTGG-TTTCAATATAAGCAATATTTCAAT--A----TATG-TG---ATTTCA-ATTTAACTGA-A-TTTTATT----TGC--AAA-GAAAAT-GA-GAGATTGAG-GTTG---GGGATTT--ACTTTCATTTCAATATAAACGAT-A-TTTCA-AATTAA-GTGATTT-------CAATATAAGTGGAGCAAGCTGTA
gi|6 : tattgtcttttagtagaaccgTCCAGATATAA--TGAAATTCAGAGGACCAACCT--TT--TTCAGTCAA-------TATAACCAAATTTCAATATAAGC-GAAATT-AGCAACATGTTGACCGCAT-AGGAAGCTTGATCAAATTTAGTGTTCAATGACAATGTTTTT-CTTTTCTGAGGAGTAGCCAG-TCTTTTTGAATTGATAATGTACATCTCCAA-GCTGTAAAAGTTGTT-ATACCCCAGTGTTATTTTACTCTTG-CATGCAGTGAAATCTAATCAGGTGAGAAAAGAAGCAAT--GCC-CCTCCTTGTAt
gi|7 : aaAAATTAATCAATGGACA-CTT--TTATATTTA-TCTGTGT--AATTA-T-GAGGT-CAACCAGCGTGACGA-C--TTCCATTAAGGATGACTTCAATATAACCGCTAT-AAAAACAATACATT-----CTCAGCAACC-------TGA-TTTCCAAATCATCGACATTTCAAG--A----TAAA-TG---ATTTCAGA-TTAACCGA-C-ATTCATTCTCACGC--AAA-AAGTAC-GA-GAAACTGAA-ATTA---TGGA
gi|8 : TCGG-TTTAAATA-AAGC-ATATT-CAAT--ACTATTGTG-C----ATTTCA-A-TTAACCGA-ACTTTTATT----TGCTCATATGAAAAT-GACGAGACTGAG--TTG---GGGATTTCTACTTTTATTTCA-TAAAACCGAT-A-TTTCACAATTAAAGCGAATTTCAAACTCAATATAAGTGGAGTAAGCTGTACgt
gi|9 : caccaaaaacTCGAT--A----TAAA-CA---ATCTCA-AATTAACTGACA-TTTTAGT-----GC--AAA-GAAAAAAGG-GAAAATGAACGTTGTAGGGGAATT--ATATTTATTACAAGTTGAGAGAT-A-TTTCA-AAAACA-CCAATTC-------CATTATAAGTGGAGTAAGCT