lowQualScore : 5555555555 1 11 111111 1111 1111 888888888888888888 1 1111111 666666666666666666666666666666666666 222222 111 111 1111111 666666666666666666666666666 11111 1 111 222222 1 4444444 1
lowQualScore : 6 6 2 3 6666666666 8 5 4 6 0 3 4 55 999999 3333 4444 444444444444444444 6 0 5 0 1 5 4444444 5 555555555555555555555555555555555555 000000 5 333 666 777 66 55555 3333333 4 4 4 4 2 111111111111111111111111111 999 6666 3 77 3 666 1 777 55 777 1 55555 5 8 3 9 4 5 000 77 222222 5 77 6 6 7777777 2 0 1
lowQualScore : . . . . .......... . . . . . . . .. ...... .... .... .................. . . . . . . ....... . .................................... ...... . ... ... ... .. ..... ....... . . . . . ........................... ... .... . .. . ... . ... .. ... . ..... . . . . . . ... .. ...... . .. . . ....... . . .
lowQualScore : 0 0 5 0 5555555555 3 5 0 0 8 2 0 77 222222 8888 6666 444444444444444444 7 8 0 4 9 0 2222222 0 333333333333333333333333333333333333 444444 0 888 555 888 11 11111 0000000 0 0 0 0 6 777777777777777777777777777 111 5555 5 99 3 111 6 000 55 111 8 44444 7 4 2 0 3 7 000 99 111111 7 99 7 0 8888888 0 0 0
consensus : AATAATTATACTCGTATACCGTTCTCTTGGAATGTNAACCGTACAAACATCCTTTAATGAGTATACGGGAAATNTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAANCATAAACACT--GCGCTTGA------AGTGAAAGC-TAAGAT---TCGATTGA--T-ATC-AT-----TA-TTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGAAGTA-TGGAT----AC-TA-ATA----CCCCCCCCCCCTCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCG---AT--TTCTCCGA-A-------AT-GTGTGG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTT-A-G-AGATTGGCCGTC---TAC--C--TGTNTNTA--AT-ATAGCGCTATAGTTAAAATGAATCAG-AA---GG--G------G-GGGG--GGGTATTAGTATCCATA--CT--NCAAG-TGCCTGTGATTG
Reference ( gi|1 ) : AATAATTATACTCGTATACTGTTTTCTTAGAATGTGAACAGTATAAGTATCCTTTAATGTGTATACTAGAAATTTGTGTGATTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGCTTGA------AGTGAAATC-TAAGAT---TTGATT----T-ATT-AC-----TA-TTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGCAGTA-TGGAT----AT-TA-ATA---ACCCCCCCCCCCTCC-------TTCATTTA-TAATTTTCC----T-TTTTG-TTGC--TGGCG---AT--TTCTCCAA-A-------AT-GTGTGG-ATT-C-CCAGTCTAT----TCTTGTCT-A-TTCC--TAGTGCGATTTATGTGAGCGTTT----CACGCTTTTTATAAGC--TTT-A-A-AGATTGGCCGTT---TAC--C--TGTTTCTA--AT-ATAGTGATATATTTAAAATAAATCAG-AA---GG--G------G-GGGG--GGGTATTAGTTTCCGTAT-TT--TCAGG-TGCCTATGATTGGA
gi|2 : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTATAA-----------TGTGTATACGAGAATTTTGTGGGGTTTATTTAATTTCAAAAAGTTGATCTTTTATACATCATAAACACT--GCGCTTGA------AGTGAAAGC-TAAGAT---TTGATTGA--T-ATG-ATTGACATA-TTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGCAGTA-TGGAT----AT-TA-ATA-----CCCCCCCCCCTCC-------TTCATTTA-TAATTTTCC----T-TTTTC-TTGT--TGCCG---TT--TTCTCCAA-A-------AT-GTGTTG-ATT-T-CCAGTCTAT---------TCT-A-TTCC--TATTTCAATTTATGTGAGCGTTT----C
gi|8 : TCTTTTGGAATGTCAACCATACAAACATCCTTTAATGAGTATACAGGGAATATGCGTGGTTTAATGAATTTTAAAAAGTTAATCTTTTATAAAACATAGATACC--TAGCTAAAATTTTTATTGAAATCAGAAAAT---GCAGTT----T--TC-ATGGGGATATTTACCTGC------TACTGTGATCAGCTAAGTGGAT
gi|20 : ATGAGTATACGGGAAATATGTGTGGTTTATTCAATTTTAAATAGTTGATC---TATAAAATAGAAACACT--G
gi|17 : GTATATGAGAAATTTGTGTTGTTTATTTAATTTTAAAAAGTTGATCTTTTACAAATCATAAACACT--GCGCTTGA------AGTAAAA
gi|15 : AGACACTTTGCGCTTGA------AGCGAA---------------GAT-----------AC-----CG-GTA-----TGATTGTACTGTGACCAGCTAGATGGATCACGGGCA-CCTGAGGTA-TGGATTCTAAT-TATATA---------CCCACCTCT-------TTg
gi|3 : ACACTTTGCGCCTGA------AGTGGAAGC-TAAGATCTATTGACT----A-ATC-AT-----TA-t
gi|7 : tggCT--GCGCTTGA------AGTGAAAGC-TAAGAT---TTGATTGATATGATTGACA----TA-TTACCCGCTCATTGTACTGTGATCAGCTAAATGGATCACAAGCA-CTTGCGGTA-TGGAT----AC-TA-ATACCCATCCCCCTCCCGTCCTTTCCCATTCATTTATTTATTTTCCTTAAT-TTTTG-TTGC--TGGCG---AT--TTCTTTAAGG-------AT-GTATGG-aaaaaaacaaaaacaaaaaacccgccccatttttcatgggcatactactcactcattgtactgtgattagctagacgaatcaaaggcacctaaagtatggatttttgtttgtttgttttctttgccggcgataattttggattcccagtctatcttattcttattttgatttctgtatgcgttttacgctttttgtaaattttacacacattaagagtttatagtactgtagcaataaaaaagaaatcagaaggggggggggtaagtatccaa
gi|3 : tg-----TA-CTACTCACTCATTGTACTGTGATTAGCTAGACGAATCAAAGGCA-CCTAAAGTA-TGGAT------------------------------T-------TTTGTTTG-----TTTGT----T-TTCT--TTGC--CGGCG---AT-----------A-------AT--TTTGG-ATT-C-CCAGTCTA-----TCT----T-A-TTCT--TATTTTGATTTCTGTATGCGTTT----TACGCTTTTTGTAAAT--TTT-ACACACATTAAGAGTT---TA---------TAGTA--CT-GTAGCAATA-A---AAAAGAAATCAG-AA----G--G------G-GGGG--GGGTA--AGTATCCgactt
gi|4 : tggacactttgcgcctgaagtggaagctaagatctattgactaatcattaaaaaaaacaaaaacaaaaaacccgccccatttttcatgggcaGATCACCGTCA-CCTAAAGTT-TGAAT----AC-TG-ATA-----------CCCC--------------------AATTCTGA----T-TTTT---TGC---GGCG---AT--TTCTCTGA-A-------A-------A-ATT-C-CCTGTCTATCTCATCTCATCTCA-TCTC--TATT-TGAGTTATGTAATCGTTT----CAAGCTTTTTG-AAGC--TTT-A-G-AGATCATCCTTC---TAC--C--GGTAT-----AT-ATAaa
gi|18 : aatagtgtggattacccatcgtctcatccctattagcgttttaagctttttgtgatctttaaagattggcctttttataccggtgtgtgACCATAGGCA-CTTGAAATA-TGGAT----AC-TA-ATA---CCCCCCCCTCCCTTC--------TGATTTA-T
gi|5 : atatatagcgctatagttaaaCAGACA-CCTGAAATA-TGGAT----AC-TA-CTA---CCACAACCGACCTCC-------TTGGTGAG-TAGTTTT------T-GTTTG--TGCGATGATA---AT--TTCTTTGC-A-------AT-GTGTGG-ATT-C-CC-TTTTA-----TCTCGTC------CCAATATTTCGATTTATGT-AATG-------------TTTTGT---C--TTT-G-G-AGATTGGCCTTC---TAC--C--tg
gi|10 : CAGGCAACCTG-AGTAATATAT----ATACA-CTA---ACACCCCCCCACCCC------------------ATTTTCT----TATTTTG-GTGCAATAG------T--TCCTGCGA-A-------TT-GCATGGTATT-TTCCAGTATAA----TCT-GT---A-TCAC--TATTTTGATTTTTG-AAATATTTATTATACGCTCTTTGTAAGC---TT-A-G-AGATTGGCaggatgccggtacaatatttcaaatgcttacaaaaagcgtgcaaccattacataaatcgaagtagggattaga
gi|6 : CCCCCCCCCCC-CG-------TTC------TGCTTTTTC----T-TTAAGATTGT--CGGCGAAAAA--TTCTACAG-AAATGTGTAT-GTGTGG-ATT-C-CCAATCTAT----CTTT-------TTCC--TATTTCGATTTATGTAACCGTTC----CACGCCTTTTGTAAGCCTTTT-A-G-AGATAAGCCATC---TAC--C--
gi|9 : acaggtacctgaagtacagatactaaatacctacccccaaccccaacccccaaaccc-TTTTG-TTTC--CGGCG---ATATTTTTCCGA-A-------AT-GTGTGG-ATT-C-CCTGTCTAT----C----TC--A-TTCC--AATTTCGATTAATGTGATCCTTT----CACGCTTTTTGTAAGC--TTT-A-T-ATATTTACTTTC---TAC--C--att
gi|12 : tcctacactgtgtactgtcttattcc---AT--TTCTCGAA-A-------AT-GTATAG-ATT-C-TCGGTCCGT-----CTTATC------CC--TATTTCGATTTATGTATTCGTTT----CATGCTATTTGCAAGT--TTT-A-A-ATATCAGCGGTC---TATCAC--TATCTTTG--AG-ATAtcaaaatctggagtagtaactccatatttcagatat
gi|4 : gatggcaata-A-------ATAGTGTGG-ATTAC-CCA------------TCGTCTCA-TCCC--TA-------TTA-----GCGTTT----TAAGCTTTTTGTGATC--TTT-A-A-AGATTGGCCTTTTTATAC--CGGTGTGTGTAT-AT-ATACCGGTA
gi|11 : T-T-CCAGTTTAT----TTT------A-TTC---TAGTTCGATT-ATGT-AGCGTTT----CATGCTTTT-ATAAGC--TTT-A-A-AGATTGGCCGTT---ACC--C--TGTTTCTAATAT-ATAGTGCTATACTTAAA--GAATCAG-AA---GG--G------G-GGGG--GGGgaaggatgatctctaaagcttcaaaaagcttgaaacgattacataactcaaatagagatgagatgagatgagatagacagggaatttttcagagaaatcgccgcaaaaaatcagaattggggtatcagtattcaaactttaggtgacggtgatc
gi|5 : TCT-AATCCC--TACTTCGATTTATGTAATGGTTG----CACGCTTTTTGTAAGCA-TTTGA-A-ATATTGgggggtagtatccatt
gi|14 : cagacacctgaaatatggatactactaccacaaccgacctccttggtgagtagtttttgtttgtgcgatgataatttctttgcaatgtgtggattcccttttatctcgtcccaatatttcgatttatgtaatgttttgtctttggagattggccttctaccaggatgccggtaGATTTATGTAACCGTTT----CACGCTTTGTGTAGGC--TTT-A-G-AAATTGGCCGTC---AAC--C--AGT
gi|13 : TTTATGTGAGCGTTT----CACGCTTTTTATCAGT--TTT-A-A-AGATTGGTCGTT---TAC--C--TGTTTCTA--GTAATAGTGCCATAGTTAAAATGAATCAGAAA---GG--G------G-GGGG--GGGGGTTAGTATCCatatttaaagacagccaatttttaatgagcgcatataaaattgtaaatacataa
gi|18 : --AT-ATAGCGCTATAGTTAAAATAAATCAG-AA---GG--GA-----G-GGGG--GGGTATTAGTATCCATA--TT--TCAAG-TGCCTATGGTTGa
gi|7 : atAAATGAATGGG-AA---AG--GACGGGAG-GGGGATGGGTATTAGTATCCATA--CC--GCAAG-TGCTTGTGAT
gi|2 : tgctgcgcttgaagtgaaagctaagatttgattgatatgattgacatattacccgctcattgtactgtgatcagctaaatggATAAAT--G-AA---GGAGG------G-GGGG--GGGTATTAATATCCATA--CT--GCAAG-TGCCTGTGATatttattttccttaatttttgttgctggcgatttctttaaggatgtatgggactt
gi|10 : aataattatactcgtataccgttttcttggaatgtgaacagtataatgtgtatacgagaattttgtggggtttatttaatttcaaaaagttgatcttttatacatcataaacactgcgcttgaagtgaaagctaagatttgattgatatgattgacatattacccgctcattgtactgtgatcagctagatggAAATAAG-AAAATGG--G------GTGGGG--GGGTGTTAGTGTATATATATTACTCAGGTTGCCTaattttcctttttcttgttgccgttttctccaaaatgtgttgatttccagtctattctattcctatttcaatttatgtgagcgtttc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AACTGTGGCTATTACCTCATCCTGATTCTGATTCCGATTTAATTTTTAATTTTGCGGTGATAATTATTCAGGAATGTATGGATTCGCT
Unaligned ( gi|19 ): GATTGGCCGTCTACCAGCTATGTTTAAAGACAGCCAATATTTCTAAGACTTGAATACATAAATTGAAGATACAT
Alignments
lowQualScore : 11111 11 22222222222 33333333333333 11111111111 777777777777777777777777777777777777777777777777777777 111111 111 111 111111 44444444444444 111 111 11 1111 11 22
lowQualScore : 0 1 6 77777 4 1 0 1 33 77777777777 77 77 3 3 77 99 99 11111111111111 3 4 66 66 88888888888 4 222222222222222222222222222222222222222222222222222222 555555 4 88 444 222 444 3 3 1 000000 3 3 3 1 99999999999999 3 44 1 6666 44 1 8888 000 77 1 1 222 5 888 66 7 22 0000 8 11 8 0 5 66 1 6
lowQualScore : . . . ..... . . . . .. ........... .. .. . . .. .. .. .............. . . .. .. ........... . ...................................................... ...... . .. ... ... ... . . . ...... . . . . .............. . .. . .... .. . .... ... .. . . ... . ... .. . .. .... . .. . . . .. . .
lowQualScore : 7 0 7 77777 0 0 8 0 88 11111111111 99 99 2 2 33 22 22 33333333333333 2 4 11 11 66666666666 4 111111111111111111111111111111111111111111111111111111 444444 4 33 333 555 555 6 6 2 555555 6 6 6 5 99999999999999 3 66 0 1111 22 0 2222 444 99 0 0 222 0 888 99 9 55 2222 0 00 0 6 6 00 0 0
consensus : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGAT--ATNAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TAC---C--TGTNTNTA---AT-A---TA--GCGNTATANTTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
Reference ( family-212 ) : AATAATTATACTCGTATACCGTTCTCTTGGAATGTNAACCGTACAAACATCCTTTAATGAGTATACGGGAAATNTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAANCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTCGAT--TGAT--ATCAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TAC---C--TGTNTNTA---AT-A---TA--GCGCTATAGTTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATA-CTNCAAGTGCCTGTGATTG
gi|1 : AATAATTATACTCGTATACTGTTTTCTTAGAATGTGAACAGTATAAGTATCCTTTAATGTGTATACTAGAAATTTGTGTGATTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--TCTAAGATTTGAT--T--T--ATTAC-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TAACCC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTG-TTGC--TGGCGAT---TTCTCC-AA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTTGTCT-A-TTCC--TAGTGCGATTTATGTGAGCGTTT----CACGCTTTTTATAAGC--TTTAAAGATTGGCCGTT---TAC---C--TGTTTCTA---AT-A---TA--GTGATATATTTAAAATA--AATCAG-AA--GGG-GGGGGGGGTATTAGTTTCCGTATTTTCAGGTGCCTATGATTG
gi|10 : CAGGCAACCTGAGTAATATATATACACTA-----A-----CA-CCC--C-------------------CCCACC-CC-----------------------ATTTTCT----TATTTTG-GTGC---AATAGT---TCCTGC-GA-ATT-GCAT------GGTATT-TTCCAGTATAA----TCT-GT---A-TCAC--TATTTTGATTTTTG-AAATATTTATTATACGCTCTTTGTAAGC---TTAGAGATTGGCga
gi|11 : T-T-CCAGTTTAT----TTT------A-TTC---TAGTTCGATT-ATGTA-GCGTTT----CATGCTTTT-ATAAGC--TTTAAAGATTGGCCGT----TAC---CC-TGTTTCTA---AT-A---TATAGTGCTATACTTAAA--G--AATCAG-AAGGGGG-GGGGGGGGGGGTAGTATCCAT
gi|12 : AT---TTCTCG-AA-AAT-GTAT------AG-ATT-C-TCGGTC----------CGTCTTA-TCCC--TATTTCGATTTATGTATTCGTTT----CATGCTATTTGCAAGT--TTTAAATATCAGCGGTC---TATCA-C--TATCTTTG---AG-A---TA--t
gi|13 : gatggcaataTTTATGTGAGCGTTT----CACGCTTTTTATCAGT--TTTAAAGATTGGTCGTT---TAC---C--TGTTTCTA---GTAA---TA--GTGCCATAGTTAAAATG--AATCAGAAA--GGG-GGGGGGGGGGTTAGTATCCA
gi|14 : GATTTATGTAACCGTTT----CACGCTTTGTGTAGGC--TTTAGAAATTGGCCGTC---AAC---C--AGTATAT
gi|15 : AGACACTTTGCGC-----------TTGAAGC--GAA-------------------GAT--ACCGG-----T-----AT-----G---ATTGTACTGTGACCAGCTAGATGGATCACGGGCA-CCTGA--GGTATGGATTC--TAATTATA-----TA-CCC--A-------------------CCT-Cttaaagacagccaatttttaatgagcgcatataaaattgtaaatacataa
gi|17 : GTATATGAGAAATTTGTGTTGTTTATTTAATTTTAAAAAGTTGATCTTTTACAAATCATAAACACT--GCGC-----------TTGAAGT--AAAA--Gtttt
gi|18 : ---AT-A---TA--GCGCTATAGTTAAAATA--AATCAG-AA--GGGAGGGGGGGGTATTAGTATCCATA-TTTCAAGTGCCTATGGTTG
gi|19 : atGATTGGCCGTC---TACCAGC--TATGTTTA---A
gi|2 : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTA-----------TAATGTGTATACGAGAATTTTGTGGGGTTTATTTAATTTCAAAAAGTTGATCTTTTATACATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGAT--ATGATTGACAT-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TA--CC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTC-TTGT--TGCCGTT---TTCTCC-AA-AAT-GTGT------TG-ATT-T-CCAGTCTAT---------TCT-A-TTCC--TATTTCAATTTATGTGAGCGTTT----Cagacagccaatatttctaagacttgaatacataaattgaagatacat
gi|20 : ATGAGTATACGGGAAATATGTGTGGTTTATTCAATTTTAAATAGTTGATC---TATAAAATAGAAACACT--G
gi|3 : ACACTTTGCGC-----------CTGAAGT--GGAA--GCTAAGA-TCTAT--TGACTAATCAT-----T-----A
gi|3 : tgg-----T-----ACTACTCACTCATTGTACTGTGATTAGCTAGACGAATCAAAGGCA-CCTAA--AGTATGGAT----------------------------------------------------------T-------TTTGTTTG-T----TTGT----T-TTCT--TTGC--CGGCGAT-------------AAT-TT-T------GG-ATT-C-CCAGTCTAT-----CT----T-A-TTCT--TATTTTGATTTCTGTATGCGTTT----TACGCTTTTTGTAAAT--TTTACACA-----CAT----TAA---G--AGTTTATA---GT-ACTGTA--GCA--ATAA--AAAAGA--AATCAG-AA---GG-GGGGGGGGTA--AGTATCCAaaaaaaacaaaaacaaaaaacccgccccatttttcatgggcatactactcactcattgtactgtgattagctagacgaatcaaaggcacctaaagtatggatttttgtttgtttgttttctttgccggcgataattttggattcccagtctatcttattcttattttgatttctgtatgcgttttacgctttttgtaaattttacacacattaagagtttatagtactgtagcaataaaaaagaaatcagaaggggggggggtaagtatccaa
gi|4 : tggacactttgcgcctgaagtggaagctaagatctattgactaatcattaaaaaaaacaaaaacaaaaaacccgccccatttttcatgggca-AATAGTGT------GG-ATTAC-CCA------------TCGTCTCA-TCCC--TATT------------AGCGTTT----TAAGCTTTTTGTGATC--TTTAAAGATTGGCCTTTTTATAC---CGGTGTGTGTAT--AT-A---TA--CCGGTAa
gi|4 : GATCACCGTCA-CCTAA--AGTTTGAATAC--TG-----A-----TA-CCC--C--------------------------------------------------AATTCTGA----T-TTTT---TGC---GGCGAT---TTCTCT-GA-AA-------------A-ATT-C-CCTGTCTATCTCATCTCATCTCA-TCTC--TATTT-GAGTTATGTAATCGTTT----CAAGCTTTTTG-AAGC--TTTAGAGATCATCCTTC---TAC---C--GGTATATATACAC-A---CA--CCGGTATA---AAAAGGCCAATCgaaggatgatctctaaagcttcaaaaagcttgaaacgattacataactcaaatagagatgagatgagatgagatagacagggaatttttcagagaaatcgccgcaaaaaatcagaattggggtatcagtattcaaactttaggtgacggtgatc
gi|5 : aatagtgtggattacccatcgtctcatccctattagcgttttaagctttttgtgatctttaaaCAGACA-CCTGA--AATATGGATAC--TA-----C-----TA-CCA--C-------------------AAC-CGACC--TCC-------TTGGTGAG-TAGTTTT------T-GTTTG-T-GCGATGATAAT---TTCTTT-GC-AAT-GTGT------GG-ATT-C-CC-TTTTA-----TCTCG------TCCCAATATTTCGATTTATGTAAT-G-------------TTTTGT---C--TTTGGAGATTGGCCTTC---TAC---C--
gi|5 : TCT-AATCCC--TACTTCGATTTATGTAATGGTTG----CACGCTTTTTGTAAGC--ATTTGAAATaggatgccggtacaatatttcaaatgcttacaaaaagcgtgcaaccattacataaatcgaagtagggattaga
gi|6 : cagacacctgaaatatggatactactaccacaaccgacctccttggtgagtagtttttgtttgtgcgatgataatttctttgcaatgtgtggattcccttttatctcgtcccaatatttcgatttatgtaatgttttgtctttggagattggccttctaccaggatgccggtacaatACAGGTA-CCTGA--AGTACAGATAC--TA-----AATACCTA-CCC--CCAACCCCAACCCCCAAACCCCC-CC-CC--CCC-------CCCGTTC--TGCTTTTTC----T-TTAAGATTGT--CGGCGAAAAATTCTACAGA-AAT-GTGTATGTGTGG-ATT-C-CCAATCTAT----CTTT-------TTCC--TATTTCGATTTATGTAACCGTTC----CACGCCTTTTGTAAGCCTTTTAGAGATAAGCCATC---TAC---C--
gi|7 : CT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGAT--ATGAT-----TGACATATTACCCGCTCATTGTACTGTGATCAGCTAAATGGATCACAAGCA-CTTGC--GGTATGGATAC--TA-----A-----TA-CCCATC-------------------CCC-CT-CCCGTCCTTTCCCATTCATTTATTTATTTTCCTTAAT-TTTTG-TTGC--TGGCGAT---TTCTTT-AAGGAT-GTAT------GG-att
gi|8 : tgTCTTTTGGAATGTCAACCATACAAACATCCTTTAATGAGTATACAGGGAATATGCGTGGTTTAATGAATTTTAAAAAGTTAATCTTTTATAAAACATAGATACC--TAGCTAAAATTTTTATTGAAATCAGAAAATGC--AGTTTTCATGGGGAT--AT---------------TTACCTGC------TACTGTGATCAGCTAAGTGGATgactt
gi|9 : -TTTTG-TTTC--CGGCGATAT-TTTTCC-GA-AAT-GTGT------GG-ATT-C-CCTGTCTAT-----CTC-----A-TTCC--AATTTCGATTAATGTGATCCTTT----CACGCTTTTTGTAAGC--TTTATATATTTACTTTC---TAC---C--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACTGTGGCTATTACCTCATCCTGATTCTGATTCCGATTTAATTTTTAATTTTGCGGTGATAATTATTCAGGAATGTATGGATTCGCT
Alignments
lowQualScore : 11111 11 22222222222 222222222222 11111111111 777777777777777777777777777777777777777777777777777777 111111 111 111 111111 44444444444444 111 1 1111 11 1
lowQualScore : 77777 1 1 0 1 33 77777777777 77 77 3 1 6 99 7 666666666666 3 4 66 66 88888888888 4 222222222222222222222222222222222222222222222222222222 555555 4 88 444 222 444 3 3 1 000000 3 3 3 1 99999999999999 3 44 1 6666 44 2 9999 55 999 1 1 333 5 888 66 1 4 0000 8 11 8 0 5 5
lowQualScore : ..... . . . . .. ........... .. .. . . . .. . ............ . . .. .. ........... . ...................................................... ...... . .. ... ... ... . . . ...... . . . . .............. . .. . .... .. . .... .. ... . . ... . ... .. . . .... . .. . . . .
lowQualScore : 33333 0 4 8 4 88 11111111111 99 99 2 7 7 22 5 666666666666 2 4 11 11 66666666666 4 111111111111111111111111111111111111111111111111111111 444444 4 33 333 555 555 6 6 2 555555 6 6 6 5 99999999999999 3 66 0 1111 22 0 8888 00 111 0 0 888 0 888 99 0 0 2222 0 00 0 6 6 5
consensus : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TAC--C--TGTNTNTA---AT-A---TA--GCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
Reference ( family-212 ) : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATNAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TAC--C--TGTNTNTA---AT-A---TA--GCGNTATANTTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
gi|1 : AATAATTATACTCGTATACTGTTTTCTTAGAATGTGAACAGTATAAGTATCCTTTAATGTGTATACTAGAAATTTGTGTGATTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--TCTAAGATTTGAT--T--TATTAC-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TAACCC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTG-TTGC--TGGCGAT---TTCTCC-AA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTTGTCT-A-TTCC--TAGTGCGATTTATGTGAGCGTTT----CACGCTTTTTATAAGC--TTTAAAGATTGGCCGTT---TAC--C--TGTTTCTA---AT-A---TA--GTGATATATTTAAAATA--AATCAG-AA--GGG-GGGGGGGGTATTAGTTTCCGTATTTTCAGGTGCCTATGATTG
gi|10 : CAGGCAACCTGAGTAATATATATACACTA-----A-----CA-CCC--C-------------------CCCACC-CC-----------------------ATTTTCT----TATTTTG-GTGC---AATAGT---TCCTGC-GA-ATT-GCAT------GGTATT-TTCCAGTATAA----TCT-GT---A-TCAC--TATTTTGATTTTTG-AAATATTTATTATACGCTCTTTGTAAGC---TTAGAGATTGGCga
gi|11 : T-T-CCAGTTTAT----TTT------A-TTC---TAGTTCGATT-ATGTA-GCGTTT----CATGCTTTT-ATAAGC--TTTAAAGATTGGCCGT----TAC--CC-TGTTTCTA---AT-A---TATAGTGCTATACTTAAA--G--AATCAG-AAGGGGG-GGGGGGGGGGGTAGTATCCAT
gi|12 : AT---TTCTCG-AA-AAT-GTAT------AG-ATT-C-TCGGTC----------CGTCTTA-TCCC--TATTTCGATTTATGTATTCGTTT----CATGCTATTTGCAAGT--TTTAAATATCAGCGGTC---TATCAC--TATCTTTG---AG-A---TA--t
gi|13 : gatggcaataTTTATGTGAGCGTTT----CACGCTTTTTATCAGT--TTTAAAGATTGGTCGTT---TAC--C--TGTTTCTA---GTAA---TA--GTGCCATAGTTAAAATG--AATCAGAAA--GGG-GGGGGGGGGGTTAGTATCCA
gi|14 : GATTTATGTAACCGTTT----CACGCTTTGTGTAGGC--TTTAGAAATTGGCCGTC---AAC--C--AGTATAT
gi|15 : AGACACTTTGCGC-----------TTGAAGC--GAA--------GAT---AC--CGGTATGAT-----T-------------------GTACTGTGACCAGCTAGATGGATCACGGGCA-CCTGA--GGTATGGATTC--TAATTATA-----TA-CCC--A-------------------CCT-Cttaaagacagccaatttttaatgagcgcatataaaattgtaaatacataa
gi|17 : GTATATGAGAAATTTGTGTTGTTTATTTAATTTTAAAAAGTTGATCTTTTACAAATCATAAACACT--GCGC-----------TTGAAGT--AAAA--Gtttt
gi|18 : ---AT-A---TA--GCGCTATAGTTAAAATA--AATCAG-AA--GGGAGGGGGGGGTATTAGTATCCATATTT-CAAGTGCCTATGGTTG
gi|2 : atAATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTA-----------TAATGTGTATACGAGAATTTTGTGGGGTTTATTTAATTTCAAAAAGTTGATCTTTTATACATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGATTGACAT-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TA--CC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTC-TTGT--TGCCGTT---TTCTCC-AA-AAT-GTGT------TG-ATT-T-CCAGTCTAT---------TCT-A-TTCC--TATTTCAATTTATGTGAGCGTTT----C
gi|20 : ATGAGTATACGGGAAATATGTGTGGTTTATTCAATTTTAAATAGTTGATC---TATAAAATAGAAACACT--G
gi|3 : ACACTTTGCGC-----------CTGAAGT--GGAA--GCTAAGATCT-AT--TGAC-TAAT-----C-----ATTA
gi|3 : tgg-----T-----ACTACTCACTCATTGTACTGTGATTAGCTAGACGAATCAAAGGCA-CCTAA--AGTATGGAT----------------------------------------------------------T-------TTTGTTTG-T----TTGT----T-TTCT--TTGC--CGGCGAT-------------AAT-TT-T------GG-ATT-C-CCAGTCTAT-----CT----T-A-TTCT--TATTTTGATTTCTGTATGCGTTT----TACGCTTTTTGTAAAT--TTTACACA-----CAT----TAA--G--AGTTTATA---GT-ACTGTA--GCAATA-A---AAAAGA--AATCAG-AA---GG-GGGGGGGGTA--AGTATCCAaaaaaaacaaaaacaaaaaacccgccccatttttcatgggcatactactcactcattgtactgtgattagctagacgaatcaaaggcacctaaagtatggatttttgtttgtttgttttctttgccggcgataattttggattcccagtctatcttattcttattttgatttctgtatgcgttttacgctttttgtaaattttacacacattaagagtttatagtactgtagcaataaaaaagaaatcagaaggggggggggtaagtatccaa
gi|4 : tggacactttgcgcctgaagtggaagctaagatctattgactaatcattaaaaaaaacaaaaacaaaaaacccgccccatttttcatgggca-AATAGTGT------GG-ATTAC-CCA------------TCGTCTCA-TCCC--TATT------------AGCGTTT----TAAGCTTTTTGTGATC--TTTAAAGATTGGCCTTTTTATAC--CGGTGTGTGTAT--AT-A---TA--CCGGTAa
gi|4 : GATCACCGTCA-CCTAA--AGTTTGAATAC--TG-----A-----TA-CCC--C--------------------------------------------------AATTCTGA----T-TTTT---TGC---GGCGAT---TTCTCT-GA-AA-------------A-ATT-C-CCTGTCTATCTCATCTCATCTCA-TCTC--TATTT-GAGTTATGTAATCGTTT----CAAGCTTTTTG-AAGC--TTTAGAGATCATCCTTC---TAC--C--GGTATATATACAC-A---CA--CCGGTATA---AAAAGGCCAATCgaaggatgatctctaaagcttcaaaaagcttgaaacgattacataactcaaatagagatgagatgagatgagatagacagggaatttttcagagaaatcgccgcaaaaaatcagaattggggtatcagtattcaaactttaggtgacggtgatc
gi|5 : aatagtgtggattacccatcgtctcatccctattagcgttttaagctttttgtgatctttaaaCAGACA-CCTGA--AATATGGATAC--TA-----C-----TA-CCA--C-------------------AAC-CGACC--TCC-------TTGGTGAG-TAGTTTT------T-GTTTG-T-GCGATGATAAT---TTCTTT-GC-AAT-GTGT------GG-ATT-C-CC-TTTTA-----TCTCG------TCCCAATATTTCGATTTATGTAAT-G-------------TTTTGT---C--TTTGGAGATTGGCCTTC---TAC--C--
gi|5 : TCT-AATCCC--TACTTCGATTTATGTAATGGTTG----CACGCTTTTTGTAAGC--ATTTGAAATaggatgccggtacaatatttcaaatgcttacaaaaagcgtgcaaccattacataaatcgaagtagggattaga
gi|6 : cagacacctgaaatatggatactactaccacaaccgacctccttggtgagtagtttttgtttgtgcgatgataatttctttgcaatgtgtggattcccttttatctcgtcccaatatttcgatttatgtaatgttttgtctttggagattggccttctaccaggatgccggtacaatACAGGTA-CCTGA--AGTACAGATAC--TA-----AATACCTA-CCC--CCAACCCCAACCCCCAAACCCCC-CC-CC--CCC-------CCCGTTC--TGCTTTTTC----T-TTAAGATTGT--CGGCGAAAAATTCTACAGA-AAT-GTGTATGTGTGG-ATT-C-CCAATCTAT----CTTT-------TTCC--TATTTCGATTTATGTAACCGTTC----CACGCCTTTTGTAAGCCTTTTAGAGATAAGCCATC---TAC--C--
gi|7 : CT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----TGACATATTACCCGCTCATTGTACTGTGATCAGCTAAATGGATCACAAGCA-CTTGC--GGTATGGATAC--TA-----A-----TA-CCCATC-------------------CCC-CT-CCCGTCCTTTCCCATTCATTTATTTATTTTCCTTAAT-TTTTG-TTGC--TGGCGAT---TTCTTT-AAGGAT-GTAT------GG-att
gi|8 : tgTCTTTTGGAATGTCAACCATACAAACATCCTTTAATGAGTATACAGGGAATATGCGTGGTTTAATGAATTTTAAAAAGTTAATCTTTTATAAAACATAGATACC--TAGCTAAAATTTTTATTGAAATCAGAAAATGC--AGTTTTCATGGGGATAT---------------TTACCTGC------TACTGTGATCAGCTAAGTGGATgactt
gi|9 : -TTTTG-TTTC--CGGCGATAT-TTTTCC-GA-AAT-GTGT------GG-ATT-C-CCTGTCTAT-----CTC-----A-TTCC--AATTTCGATTAATGTGATCCTTT----CACGCTTTTTGTAAGC--TTTATATATTTACTTTC---TAC--C--
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACTGTGGCTATTACCTCATCCTGATTCTGATTCCGATTTAATTTTTAATTTTGCGGTGATAATTATTCAGGAATGTATGGATTCGCT
Unaligned ( gi|19 ): GATTGGCCGTCTACCAGCTATGTTTAAAGACAGCCAATATTTCTAAGACTTGAATACATAAATTGAAGATACAT
Alignments
lowQualScore : 11111 11 22222222222 222222222222 11111111111 777777777777777777777777777777777777777777777777777777 111111 111 111 111111 44444444444444 111 111 33 1111 11 1
lowQualScore : 77777 1 1 0 1 33 77777777777 77 77 3 1 6 99 5 666666666666 3 4 66 66 88888888888 4 222222222222222222222222222222222222222222222222222222 555555 4 88 444 222 444 3 3 1 000000 3 3 3 1 99999999999999 3 44 1 6666 44 1 8888 3 000 44 1 1 888 5 888 1 44 0000 8 11 8 0 5 5
lowQualScore : ..... . . . . .. ........... .. .. . . . .. . ............ . . .. .. ........... . ...................................................... ...... . .. ... ... ... . . . ...... . . . . .............. . .. . .... .. . .... . ... .. . . ... . ... . .. .... . .. . . . .
lowQualScore : 33333 0 4 8 4 88 11111111111 99 99 2 7 7 22 2 666666666666 2 4 11 11 66666666666 4 111111111111111111111111111111111111111111111111111111 444444 4 33 333 555 555 6 6 2 555555 6 6 6 5 99999999999999 3 66 0 1111 22 0 2222 3 444 66 0 0 333 0 888 0 00 2222 0 00 0 6 6 5
consensus : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
Reference ( family-212 ) : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
gi|1 : AATAATTATACTCGTATACTGTTTTCTTAGAATGTGAACAGTATAAGTATCCTTTAATGTGTATACTAGAAATTTGTGTGATTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--TCTAAGATTTGAT--T--TATTAC-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TAACCC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTG-TTGC--TGGCGAT---TTCTCC-AA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTTGTCT-A-TTCC--TAGTGCGATTTATGTGAGCGTTT----CACGCTTTTTATAAGC--TTTAAAGATTGGCCGTT---TA-C---C--TGTTTCTA---AT-A---TAGTGATATATTTAAAATA--AATCAG-AA--GGG-GGGGGGGGTATTAGTTTCCGTATTTTCAGGTGCCTATGATTG
gi|10 : CAGGCAACCTGAGTAATATATATACACTA-----A-----CA-CCC--C-------------------CCCACC-CC-----------------------ATTTTCT----TATTTTG-GTGC---AATAGT---TCCTGC-GA-ATT-GCAT------GGTATT-TTCCAGTATAA----TCT-GT---A-TCAC--TATTTTGATTTTTG-AAATATTTATTATACGCTCTTTGTAAGC---TTAGAGATTGGCga
gi|11 : T-T-CCAGTTTAT----TTT------A-TTC---TAGTTCGATT-ATGTA-GCGTTT----CATGCTTTT-ATAAGC--TTTAAAGATTGGCCGT----TACC---C--TGTTTCTAAT-AT-A---TAGTGCTATACTTAAA--G--AATCAG-AAGGGGG-GGGGGGGGGGGTAGTATCCAT
gi|12 : AT---TTCTCG-AA-AAT-GTAT------AG-ATT-C-TCGGTC----------CGTCTTA-TCCC--TATTTCGATTTATGTATTCGTTT----CATGCTATTTGCAAGT--TTTAAATATCAGCGGTC---TA-TCA-C--TATCTTTG---AG-A---TAt
gi|13 : gatggcaataTTTATGTGAGCGTTT----CACGCTTTTTATCAGT--TTTAAAGATTGGTCGTT---TA-C---C--TGTTTCTA---GTAA---TAGTGCCATAGTTAAAATG--AATCAGAAA--GGG-GGGGGGGGGGTTAGTATCCA
gi|14 : GATTTATGTAACCGTTT----CACGCTTTGTGTAGGC--TTTAGAAATTGGCCGTC---AA-C---C--AGTATAT
gi|15 : AGACACTTTGCGC-----------TTGAAGC--GAA--------GAT---AC--CGGTATGAT-----T-------------------GTACTGTGACCAGCTAGATGGATCACGGGCA-CCTGA--GGTATGGATTC--TAATTATA-----TA-CCC--A-------------------CCT-Cttaaagacagccaatttttaatgagcgcatataaaattgtaaatacataa
gi|17 : GTATATGAGAAATTTGTGTTGTTTATTTAATTTTAAAAAGTTGATCTTTTACAAATCATAAACACT--GCGC-----------TTGAAGT--AAAA--Gtttt
gi|18 : ---AT-A---TAGCGCTATAGTTAAAATA--AATCAG-AA--GGGAGGGGGGGGTATTAGTATCCATA-TTTCAAGTGCCTATGGTTG
gi|19 : atGATTGGCCGTC---TA-CCAGC--TATGTTTA---A
gi|2 : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTA-----------TAATGTGTATACGAGAATTTTGTGGGGTTTATTTAATTTCAAAAAGTTGATCTTTTATACATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGATTGACAT-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TA--CC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTC-TTGT--TGCCGTT---TTCTCC-AA-AAT-GTGT------TG-ATT-T-CCAGTCTAT---------TCT-A-TTCC--TATTTCAATTTATGTGAGCGTTT----Cagacagccaatatttctaagacttgaatacataaattgaagatacat
gi|20 : ATGAGTATACGGGAAATATGTGTGGTTTATTCAATTTTAAATAGTTGATC---TATAAAATAGAAACACT--G
gi|3 : ACACTTTGCGC-----------CTGAAGT--GGAA--GCTAAGATCT-AT--TGAC-TAAT-----C-----ATTA
gi|3 : tgg-----T-----ACTACTCACTCATTGTACTGTGATTAGCTAGACGAATCAAAGGCA-CCTAA--AGTATGGAT----------------------------------------------------------T-------TTTGTTTG-T----TTGT----T-TTCT--TTGC--CGGCGAT-------------AAT-TT-T------GG-ATT-C-CCAGTCTAT-----CT----T-A-TTCT--TATTTTGATTTCTGTATGCGTTT----TACGCTTTTTGTAAAT--TTTACACA-----CAT----TA-A---G--AGTTTATA---GT-ACTGTAGCAATA-A---AAAAGA--AATCAG-AA---GG-GGGGGGGGTA--AGTATCCAaaaaaaacaaaaacaaaaaacccgccccatttttcatgggcatactactcactcattgtactgtgattagctagacgaatcaaaggcacctaaagtatggatttttgtttgtttgttttctttgccggcgataattttggattcccagtctatcttattcttattttgatttctgtatgcgttttacgctttttgtaaattttacacacattaagagtttatagtactgtagcaataaaaaagaaatcagaaggggggggggtaagtatccaa
gi|4 : tggacactttgcgcctgaagtggaagctaagatctattgactaatcattaaaaaaaacaaaaacaaaaaacccgccccatttttcatgggca-AATAGTGT------GG-ATTAC-CCA------------TCGTCTCA-TCCC--TATT------------AGCGTTT----TAAGCTTTTTGTGATC--TTTAAAGATTGGCCTTTTTATA-C---CGGTGTGTGTAT--AT-A---TACCGGTAa
gi|4 : GATCACCGTCA-CCTAA--AGTTTGAATAC--TG-----A-----TA-CCC--C--------------------------------------------------AATTCTGA----T-TTTT---TGC---GGCGAT---TTCTCT-GA-AA-------------A-ATT-C-CCTGTCTATCTCATCTCATCTCA-TCTC--TATTT-GAGTTATGTAATCGTTT----CAAGCTTTTTG-AAGC--TTTAGAGATCATCCTTC---TA-C---C--GGTATATATACAC-A---CACCGGTATA---AAAAGGCCAATCgaaggatgatctctaaagcttcaaaaagcttgaaacgattacataactcaaatagagatgagatgagatgagatagacagggaatttttcagagaaatcgccgcaaaaaatcagaattggggtatcagtattcaaactttaggtgacggtgatc
gi|5 : aatagtgtggattacccatcgtctcatccctattagcgttttaagctttttgtgatctttaaaCAGACA-CCTGA--AATATGGATAC--TA-----C-----TA-CCA--C-------------------AAC-CGACC--TCC-------TTGGTGAG-TAGTTTT------T-GTTTG-T-GCGATGATAAT---TTCTTT-GC-AAT-GTGT------GG-ATT-C-CC-TTTTA-----TCTCG------TCCCAATATTTCGATTTATGTAAT-G-------------TTTTGT---C--TTTGGAGATTGGCCTTC---TA-C---C--
gi|5 : TCT-AATCCC--TACTTCGATTTATGTAATGGTTG----CACGCTTTTTGTAAGC--ATTTGAAATaggatgccggtacaatatttcaaatgcttacaaaaagcgtgcaaccattacataaatcgaagtagggattaga
gi|6 : cagacacctgaaatatggatactactaccacaaccgacctccttggtgagtagtttttgtttgtgcgatgataatttctttgcaatgtgtggattcccttttatctcgtcccaatatttcgatttatgtaatgttttgtctttggagattggccttctaccaggatgccggtacaatACAGGTA-CCTGA--AGTACAGATAC--TA-----AATACCTA-CCC--CCAACCCCAACCCCCAAACCCCC-CC-CC--CCC-------CCCGTTC--TGCTTTTTC----T-TTAAGATTGT--CGGCGAAAAATTCTACAGA-AAT-GTGTATGTGTGG-ATT-C-CCAATCTAT----CTTT-------TTCC--TATTTCGATTTATGTAACCGTTC----CACGCCTTTTGTAAGCCTTTTAGAGATAAGCCATC---TA-C---C--
gi|7 : CT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----TGACATATTACCCGCTCATTGTACTGTGATCAGCTAAATGGATCACAAGCA-CTTGC--GGTATGGATAC--TA-----A-----TA-CCCATC-------------------CCC-CT-CCCGTCCTTTCCCATTCATTTATTTATTTTCCTTAAT-TTTTG-TTGC--TGGCGAT---TTCTTT-AAGGAT-GTAT------GG-att
gi|8 : tgTCTTTTGGAATGTCAACCATACAAACATCCTTTAATGAGTATACAGGGAATATGCGTGGTTTAATGAATTTTAAAAAGTTAATCTTTTATAAAACATAGATACC--TAGCTAAAATTTTTATTGAAATCAGAAAATGC--AGTTTTCATGGGGATAT---------------TTACCTGC------TACTGTGATCAGCTAAGTGGATgactt
gi|9 : -TTTTG-TTTC--CGGCGATAT-TTTTCC-GA-AAT-GTGT------GG-ATT-C-CCTGTCTAT-----CTC-----A-TTCC--AATTTCGATTAATGTGATCCTTT----CACGCTTTTTGTAAGC--TTTATATATTTACTTTC---TA-C---C--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACTGTGGCTATTACCTCATCCTGATTCTGATTCCGATTTAATTTTTAATTTTGCGGTGATAATTATTCAGGAATGTATGGATTCGCT
Alignments
lowQualScore : 11111 11 22222222222 222222222222 11111111111 777777777777777777777777777777777777777777777777777777 111111 111 111 111111 44444444444444 111 111 33 1111 11 1
lowQualScore : 77777 1 1 0 1 33 77777777777 77 77 3 1 6 99 5 666666666666 3 4 66 66 88888888888 4 222222222222222222222222222222222222222222222222222222 555555 4 88 444 222 444 3 3 1 000000 3 3 3 1 99999999999999 3 44 1 6666 44 1 8888 3 000 44 1 1 888 5 888 1 44 0000 8 11 8 0 5 5
lowQualScore : ..... . . . . .. ........... .. .. . . . .. . ............ . . .. .. ........... . ...................................................... ...... . .. ... ... ... . . . ...... . . . . .............. . .. . .... .. . .... . ... .. . . ... . ... . .. .... . .. . . . .
lowQualScore : 33333 0 4 8 4 88 11111111111 99 99 2 7 7 22 2 666666666666 2 4 11 11 66666666666 4 111111111111111111111111111111111111111111111111111111 444444 4 33 333 555 555 6 6 2 555555 6 6 6 5 99999999999999 3 66 0 1111 22 0 2222 3 444 66 0 0 333 0 888 0 00 2222 0 00 0 6 6 5
consensus : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
Reference ( family-212 ) : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
gi|1 : AATAATTATACTCGTATACTGTTTTCTTAGAATGTGAACAGTATAAGTATCCTTTAATGTGTATACTAGAAATTTGTGTGATTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--TCTAAGATTTGAT--T--TATTAC-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TAACCC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTG-TTGC--TGGCGAT---TTCTCC-AA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTTGTCT-A-TTCC--TAGTGCGATTTATGTGAGCGTTT----CACGCTTTTTATAAGC--TTTAAAGATTGGCCGTT---TA-C---C--TGTTTCTA---AT-A---TAGTGATATATTTAAAATA--AATCAG-AA--GGG-GGGGGGGGTATTAGTTTCCGTATTTTCAGGTGCCTATGATTG
gi|10 : CAGGCAACCTGAGTAATATATATACACTA-----A-----CA-CCC--C-------------------CCCACC-CC-----------------------ATTTTCT----TATTTTG-GTGC---AATAGT---TCCTGC-GA-ATT-GCAT------GGTATT-TTCCAGTATAA----TCT-GT---A-TCAC--TATTTTGATTTTTG-AAATATTTATTATACGCTCTTTGTAAGC---TTAGAGATTGGCga
gi|11 : T-T-CCAGTTTAT----TTT------A-TTC---TAGTTCGATT-ATGTA-GCGTTT----CATGCTTTT-ATAAGC--TTTAAAGATTGGCCGT----TACC---C--TGTTTCTAAT-AT-A---TAGTGCTATACTTAAA--G--AATCAG-AAGGGGG-GGGGGGGGGGGTAGTATCCAT
gi|12 : AT---TTCTCG-AA-AAT-GTAT------AG-ATT-C-TCGGTC----------CGTCTTA-TCCC--TATTTCGATTTATGTATTCGTTT----CATGCTATTTGCAAGT--TTTAAATATCAGCGGTC---TA-TCA-C--TATCTTTG---AG-A---TAt
gi|13 : gatggcaataTTTATGTGAGCGTTT----CACGCTTTTTATCAGT--TTTAAAGATTGGTCGTT---TA-C---C--TGTTTCTA---GTAA---TAGTGCCATAGTTAAAATG--AATCAGAAA--GGG-GGGGGGGGGGTTAGTATCCA
gi|14 : GATTTATGTAACCGTTT----CACGCTTTGTGTAGGC--TTTAGAAATTGGCCGTC---AA-C---C--AGTATAT
gi|15 : AGACACTTTGCGC-----------TTGAAGC--GAA--------GAT---AC--CGGTATGAT-----T-------------------GTACTGTGACCAGCTAGATGGATCACGGGCA-CCTGA--GGTATGGATTC--TAATTATA-----TA-CCC--A-------------------CCT-Cttaaagacagccaatttttaatgagcgcatataaaattgtaaatacataa
gi|17 : GTATATGAGAAATTTGTGTTGTTTATTTAATTTTAAAAAGTTGATCTTTTACAAATCATAAACACT--GCGC-----------TTGAAGT--AAAA--Gtttt
gi|18 : ---AT-A---TAGCGCTATAGTTAAAATA--AATCAG-AA--GGGAGGGGGGGGTATTAGTATCCATA-TTTCAAGTGCCTATGGTTG
gi|19 : atGATTGGCCGTC---TA-CCAGC--TATGTTTA---A
gi|2 : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTA-----------TAATGTGTATACGAGAATTTTGTGGGGTTTATTTAATTTCAAAAAGTTGATCTTTTATACATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGATTGACAT-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TA--CC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTC-TTGT--TGCCGTT---TTCTCC-AA-AAT-GTGT------TG-ATT-T-CCAGTCTAT---------TCT-A-TTCC--TATTTCAATTTATGTGAGCGTTT----Cagacagccaatatttctaagacttgaatacataaattgaagatacat
gi|20 : ATGAGTATACGGGAAATATGTGTGGTTTATTCAATTTTAAATAGTTGATC---TATAAAATAGAAACACT--G
gi|3 : ACACTTTGCGC-----------CTGAAGT--GGAA--GCTAAGATCT-AT--TGAC-TAAT-----C-----ATTA
gi|3 : tgg-----T-----ACTACTCACTCATTGTACTGTGATTAGCTAGACGAATCAAAGGCA-CCTAA--AGTATGGAT----------------------------------------------------------T-------TTTGTTTG-T----TTGT----T-TTCT--TTGC--CGGCGAT-------------AAT-TT-T------GG-ATT-C-CCAGTCTAT-----CT----T-A-TTCT--TATTTTGATTTCTGTATGCGTTT----TACGCTTTTTGTAAAT--TTTACACA-----CAT----TA-A---G--AGTTTATA---GT-ACTGTAGCAATA-A---AAAAGA--AATCAG-AA---GG-GGGGGGGGTA--AGTATCCAaaaaaaacaaaaacaaaaaacccgccccatttttcatgggcatactactcactcattgtactgtgattagctagacgaatcaaaggcacctaaagtatggatttttgtttgtttgttttctttgccggcgataattttggattcccagtctatcttattcttattttgatttctgtatgcgttttacgctttttgtaaattttacacacattaagagtttatagtactgtagcaataaaaaagaaatcagaaggggggggggtaagtatccaa
gi|4 : tggacactttgcgcctgaagtggaagctaagatctattgactaatcattaaaaaaaacaaaaacaaaaaacccgccccatttttcatgggca-AATAGTGT------GG-ATTAC-CCA------------TCGTCTCA-TCCC--TATT------------AGCGTTT----TAAGCTTTTTGTGATC--TTTAAAGATTGGCCTTTTTATA-C---CGGTGTGTGTAT--AT-A---TACCGGTAa
gi|4 : GATCACCGTCA-CCTAA--AGTTTGAATAC--TG-----A-----TA-CCC--C--------------------------------------------------AATTCTGA----T-TTTT---TGC---GGCGAT---TTCTCT-GA-AA-------------A-ATT-C-CCTGTCTATCTCATCTCATCTCA-TCTC--TATTT-GAGTTATGTAATCGTTT----CAAGCTTTTTG-AAGC--TTTAGAGATCATCCTTC---TA-C---C--GGTATATATACAC-A---CACCGGTATA---AAAAGGCCAATCgaaggatgatctctaaagcttcaaaaagcttgaaacgattacataactcaaatagagatgagatgagatgagatagacagggaatttttcagagaaatcgccgcaaaaaatcagaattggggtatcagtattcaaactttaggtgacggtgatc
gi|5 : aatagtgtggattacccatcgtctcatccctattagcgttttaagctttttgtgatctttaaaCAGACA-CCTGA--AATATGGATAC--TA-----C-----TA-CCA--C-------------------AAC-CGACC--TCC-------TTGGTGAG-TAGTTTT------T-GTTTG-T-GCGATGATAAT---TTCTTT-GC-AAT-GTGT------GG-ATT-C-CC-TTTTA-----TCTCG------TCCCAATATTTCGATTTATGTAAT-G-------------TTTTGT---C--TTTGGAGATTGGCCTTC---TA-C---C--
gi|5 : TCT-AATCCC--TACTTCGATTTATGTAATGGTTG----CACGCTTTTTGTAAGC--ATTTGAAATaggatgccggtacaatatttcaaatgcttacaaaaagcgtgcaaccattacataaatcgaagtagggattaga
gi|6 : cagacacctgaaatatggatactactaccacaaccgacctccttggtgagtagtttttgtttgtgcgatgataatttctttgcaatgtgtggattcccttttatctcgtcccaatatttcgatttatgtaatgttttgtctttggagattggccttctaccaggatgccggtacaatACAGGTA-CCTGA--AGTACAGATAC--TA-----AATACCTA-CCC--CCAACCCCAACCCCCAAACCCCC-CC-CC--CCC-------CCCGTTC--TGCTTTTTC----T-TTAAGATTGT--CGGCGAAAAATTCTACAGA-AAT-GTGTATGTGTGG-ATT-C-CCAATCTAT----CTTT-------TTCC--TATTTCGATTTATGTAACCGTTC----CACGCCTTTTGTAAGCCTTTTAGAGATAAGCCATC---TA-C---C--
gi|7 : CT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----TGACATATTACCCGCTCATTGTACTGTGATCAGCTAAATGGATCACAAGCA-CTTGC--GGTATGGATAC--TA-----A-----TA-CCCATC-------------------CCC-CT-CCCGTCCTTTCCCATTCATTTATTTATTTTCCTTAAT-TTTTG-TTGC--TGGCGAT---TTCTTT-AAGGAT-GTAT------GG-att
gi|8 : tgTCTTTTGGAATGTCAACCATACAAACATCCTTTAATGAGTATACAGGGAATATGCGTGGTTTAATGAATTTTAAAAAGTTAATCTTTTATAAAACATAGATACC--TAGCTAAAATTTTTATTGAAATCAGAAAATGC--AGTTTTCATGGGGATAT---------------TTACCTGC------TACTGTGATCAGCTAAGTGGATgactt
gi|9 : -TTTTG-TTTC--CGGCGATAT-TTTTCC-GA-AAT-GTGT------GG-ATT-C-CCTGTCTAT-----CTC-----A-TTCC--AATTTCGATTAATGTGATCCTTT----CACGCTTTTTGTAAGC--TTTATATATTTACTTTC---TA-C---C--
blockSeqs : CAAAC T T T TT TAAAATTTTTA CA AT T T G GG G TGACATA T A GT AC ATTATA . CCAACCCCAACCCCCAAACCCCCCCCCCCCCCCGTTCTG CCTTAA A GA GAT AAA ACA G A A ATGTGT T A T A TCTCATCTCATCTC A AA A ATTA CT G TTTA C CAG GG T C TAC A CTG C CT GGCC A GG A G .
blockSeqs : . A T T TT . . . T C G . G TGACATA T . . . AATACC . ATCCCCCTCCCGTCCTTTCCCATTCATTTATTT CT . G T AT GC . . A . . . . A TCGTCTC . . G . . G C . CA . C T AT . . C GT TG . . . T
blockSeqs : A A A . . . . T T C . A CA T . . . A . CAACCGACCTCCTTGGTGAGTA CC . C C . CG . . G . . . . G ATCTGT . . T . . G T . . . T C T . . C GT TA . . . T
blockSeqs : A A . . . . . T . . G TA . . . . A . CCCCCCCCTCCTTCATTTATA GT . G C . CC . . G . . . . A CGTCTT . . G . . G C . . . A A . . . A . GA . . . .
blockSeqs : . . . . . . . . . T . . . . A . TTTTGTTTGT GA . G T . CT . . G . . . . A TCTCG . . C . . G C . . . G T . . . G . G
blockSeqs : . . . . . . . . C . CCCCACCCC TC . G C . TT . . G . . . . A TCTTT . . G . . A C . . . T A . . . G
blockSeqs : . . . . A . CA . . . . . TT . . A . . . . T TTTT . . G . . T C . . . G G . . .
blockSeqs : . . . . . . . . . CC . . G . . . . A TTCT . . G . . T C . . . A A .
blockSeqs : . . . . . . . . . T TCTT . . T . . T C . . .
blockSeqs : . . . . . . . . TCTC . . T . . A . . . .
blockSeqs : . . T . . T . . . .
blockSeqs : C . .
blockSeqs : T .
blockSeqCons : TGACATA***** TCTC**********
originalCons : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGAT-----T-----ATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTAT----TCTCGTCT-A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
finalCons : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGC-----------TTGAAGT--GAAA--GCTAAGATTTGAT--TGATATGATTGACATA-----TTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----TA-CCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GTGT------GG-ATT-C-CCAGTCTATCTC----------A-TCCC--TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACTGTGGCTATTACCTCATCCTGATTCTGATTCCGATTTAATTTTTAATTTTGCGGTGATAATTATTCAGGAATGTATGGATTCGCT
Alignments
lowQualScore : 11111 11 11 444444444444444444444 11111111111 777777777777777777777777777777777777777777777777777777 111111 111 111 1111111 1111111111 111 111 33 1111 11 1
lowQualScore : 77777 1 1 0 1 33 6 1 6 11 555555555555555555555 3 3 4 66 66 88888888888 4 222222222222222222222222222222222222222222222222222222 555555 4 88 444 222 444 3 3 1111111 3 3 3 1 6 44 7777 9999999999 1 6666 44 1 8888 3 000 44 1 1 888 5 888 1 44 0000 8 11 8 0 5 5
lowQualScore : ..... . . . . .. . . . .. ..................... . . . .. .. ........... . ...................................................... ...... . .. ... ... ... . . ....... . . . . . .. .... .......... . .... .. . .... . ... .. . . ... . ... . .. .... . .. . . . .
lowQualScore : 33333 0 4 8 4 88 7 7 7 00 888888888888888888888 2 2 4 11 11 66666666666 4 111111111111111111111111111111111111111111111111111111 444444 4 33 333 555 555 6 6 6666666 6 6 6 5 7 88 1111 2222222222 0 1111 22 0 2222 3 444 66 0 0 333 0 888 0 00 2222 0 00 0 6 6 5
consensus : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGCTTGAAGTGAAAGCTAAGA-TTTGATTGATAT--GA--------TT--------GACATATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----T-ACCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GT------GTGG-ATT-C-CCAGTCTA-TCT-TATC----CC----------TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
Reference ( family-212 ) : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTACAAGCATCCTTTAATGNGTATACGAGAAATTTGTGTGGTTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGCTTGAAGTGAAAGCTAAGA-TTTGATTGATAT--GA--------TT--------GACATATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CCTGA--AGTATGGATAC--TA-----A-----T-ACCC--C-------------------CCC-CC-CC--TCC-------TTCGTTTA-TAATTTTCC----T-TTTTG-TTGC--CGGCGAT---TTCTCC-GA-AAT-GT------GTGG-ATT-C-CCAGTCTA-TCT-CATC----CC----------TATTTCGATTTATGTAANCGTTT----CACGCTTTTTGTAAGC--TTTAGAGATTGGCCGTC---TA-C---C--TGTNTNTA---AT-A---TAGCGNTATA-TTAAAATG--AATCAG-AA--GGG-GGGGGGGGTATTAGTATCCATATTTTCAGGTGCCTATGGTTG
gi|1 : AATAATTATACTCGTATACTGTTTTCTTAGAATGTGAACAGTATAAGTATCCTTTAATGTGTATACTAGAAATTTGTGTGATTTATTTAATTTTAAAAAGTTGATCTTTTATAAATCATAAACACT--GCGCTTGAAGTGAAATCTAAGA-TTTGATT--TAT--TA--------C-------------TATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----TAACCC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTG-TTGC--TGGCGAT---TTCTCC-AA-AAT-GT------GTGG-ATT-C-CCAGTCTATTCT-TGTCTATTCC----------TAGTGCGATTTATGTGAGCGTTT----CACGCTTTTTATAAGC--TTTAAAGATTGGCCGTT---TA-C---C--TGTTTCTA---AT-A---TAGTGATATATTTAAAATA--AATCAG-AA--GGG-GGGGGGGGTATTAGTTTCCGTATTTTCAGGTGCCTATGATTG
gi|10 : CAGGCAACCTGAGTAATATATATACACTA-----A-----C-ACCC--C-------------------CCCACC-CC-----------------------ATTTTCT----TATTTTG-GTGC---AATAGT---TCCTGC-GA-ATT-GC------ATGGTATT-TTCCAGTATAATCTGTATC----AC----------TATTTTGATTTTTG-AAATATTTATTATACGCTCTTTGTAAGC---TTAGAGATTGGCga
gi|11 : T-T-CCAGTTTA-TTT-TATT----C-----------TAGTTCGATT-ATGTA-GCGTTT----CATGCTTTT-ATAAGC--TTTAAAGATTGGCCGT----TACC---C--TGTTTCTAAT-AT-A---TAGTGCTATACTTAAA--G--AATCAG-AAGGGGG-GGGGGGGGGGGTAGTATCCAT
gi|12 : AT---TTCTCG-AA-AAT-GT------ATAG-ATT-C-TCGGTCCG-TCT-TATC----CC----------TATTTCGATTTATGTATTCGTTT----CATGCTATTTGCAAGT--TTTAAATATCAGCGGTC---TA-TCA-C--TATCTTTG---AG-A---TAt
gi|13 : gatggcaataTTTATGTGAGCGTTT----CACGCTTTTTATCAGT--TTTAAAGATTGGTCGTT---TA-C---C--TGTTTCTA---GTAA---TAGTGCCATAGTTAAAATG--AATCAGAAA--GGG-GGGGGGGGGGTTAGTATCCA
gi|14 : GATTTATGTAACCGTTT----CACGCTTTGTGTAGGC--TTTAGAAATTGGCCGTC---AA-C---C--AGTATAT
gi|15 : AGACACTTTGCGCTTGAAGCGAA------GA-T---ACCGGTAT--GA--------TT--------G-------------------TACTGTGACCAGCTAGATGGATCACGGGCA-CCTGA--GGTATGGATTC--TAATTATA-----T-ACCC--A-------------------CCT-Cttaaagacagccaatttttaatgagcgcatataaaattgtaaatacataa
gi|17 : GTATATGAGAAATTTGTGTTGTTTATTTAATTTTAAAAAGTTGATCTTTTACAAATCATAAACACT--GCGCTTGAAGTAAAAGtttt
gi|18 : ---AT-A---TAGCGCTATAGTTAAAATA--AATCAG-AA--GGGAGGGGGGGGTATTAGTATCCATA-TTTCAAGTGCCTATGGTTG
gi|19 : atGATTGGCCGTC---TA-CCAGC--TATGTTTA---A
gi|2 : AATAATTATACTCGTATACCGTTTTCTTGGAATGTGAACAGTA-----------TAATGTGTATACGAGAATTTTGTGGGGTTTATTTAATTTCAAAAAGTTGATCTTTTATACATCATAAACACT--GCGCTTGAAGTGAAAGCTAAGA-TTTGATTGATAT--GA--------TT--------GACATATTACCCGCTCATTGTACTGTGATCAGCTAGATGGATCACAGGCA-CTTGC--AGTATGGATAT--TA-----A-----T-A-CC--C-------------------CCC-CC-CC--TCC-------TTCATTTA-TAATTTTCC----T-TTTTC-TTGT--TGCCGTT---TTCTCC-AA-AAT-GT------GTTG-ATT-T-CCAGTCTA-TTC-TATT----CC----------TATTTCAATTTATGTGAGCGTTT----Cagacagccaatatttctaagacttgaatacataaattgaagatacat
gi|20 : ATGAGTATACGGGAAATATGTGTGGTTTATTCAATTTTAAATAGTTGATC---TATAAAATAGAAACACT--G
gi|3 : ACACTTTGCGCCTGAAGTGGAAGCTAAGA-TCT-ATTGA
gi|3 : tggA--------TG--------GGCATACTACTCACTCATTGTACTGTGATTAGCTAGACGAATCAAAGGCA-CCTAA--AGTATGGAT----------------------------------------------------------T-------TTTGTTTG-T----TTGT----T-TTCT--TTGC--CGGCGAT-------------AAT-TT-------TGG-ATT-C-CCAGTCTA-TCT-TATT----CT----------TATTTTGATTTCTGTATGCGTTT----TACGCTTTTTGTAAAT--TTTACACA-----CAT----TA-A---G--AGTTTATA---GT-ACTGTAGCAATA-A---AAAAGA--AATCAG-AA---GG-GGGGGGGGTA--AGTATCCActaatcattaaaaaaaacaaaaacaaaaaacccgccccatttttcatgggcatactactcactcattgtactgtgattagctagacgaatcaaaggcacctaaagtatggatttttgtttgtttgttttctttgccggcgataattttggattcccagtctatcttattcttattttgatttctgtatgcgttttacgctttttgtaaattttacacacattaagagtttatagtactgtagcaataaaaaagaaatcagaaggggggggggtaagtatccaa
gi|4 : tggacactttgcgcctgaagtggaagctaagatctattgactaatcattaaaaaaaacaaaaacaaaaaacccgccccatttttc-AATAGT------GTGG-ATTAC-CCA-TC-G-TCT-CATC----CC----------TATT------------AGCGTTT----TAAGCTTTTTGTGATC--TTTAAAGATTGGCCTTTTTATA-C---CGGTGTGTGTAT--AT-A---TACCGGTAa
gi|4 : GATCACCGTCA-CCTAA--AGTTTGAATAC--TG-----A-----T-ACCC--C--------------------------------------------------AATTCTGA----T-TTTT---TGC---GGCGAT---TTCTCT-GA-AA-------------A-ATT-C-CCTGTCTA-TCT-CATC----TCATCTCATCTCTATTT-GAGTTATGTAATCGTTT----CAAGCTTTTTG-AAGC--TTTAGAGATCATCCTTC---TA-C---C--GGTATATATACAC-A---CACCGGTATA---AAAAGGCCAATCgaaggatgatctctaaagcttcaaaaagcttgaaacgattacataactcaaatagagatgagatgagatgagatagacagggaatttttcagagaaatcgccgcaaaaaatcagaattggggtatcagtattcaaactttaggtgacggtgatc
gi|5 : aatagtgtggattacccatcgtctcatccctattagcgttttaagctttttgtgatctttaaaCAGACA-CCTGA--AATATGGATAC--TA-----C-----T-ACCA--C-------------------AAC-CGACC--TCC-------TTGGTGAG-TAGTTTT------T-GTTTG-T-GCGATGATAAT---TTCTTT-GC-AAT-GT------GTGG-ATT-C-CC-TTTTA-TCT-CGTC----CCAA--------TATTTCGATTTATGTAAT-G-------------TTTTGT---C--TTTGGAGATTGGCCTTC---TA-C---C--
gi|5 : -TCT-AATC----CC----------TACTTCGATTTATGTAATGGTTG----CACGCTTTTTGTAAGC--ATTTGAAATaggatgccggtacaatatttcaaatgcttacaaaaagcgtgcaaccattacataaatcgaagtagggattaga
gi|6 : cagacacctgaaatatggatactactaccacaaccgacctccttggtgagtagtttttgtttgtgcgatgataatttctttgcaatgtgtggattcccttttatctcgtcccaatatttcgatttatgtaatgttttgtctttggagattggccttctaccaggatgccggtacaatACAGGTA-CCTGA--AGTACAGATAC--TA-----AATACCT-ACCC--CCAACCCCAACCCCCAAACCCCC-CC-CC--CCC-------CCCGTTC--TGCTTTTTC----T-TTAAGATTGT--CGGCGAAAAATTCTACAGA-AAT-GTGTATGTGTGG-ATT-C-CCAATCTA-TCT-TTTT----CC----------TATTTCGATTTATGTAACCGTTC----CACGCCTTTTGTAAGCCTTTTAGAGATAAGCCATC---TA-C---C--
gi|7 : CT--GCGCTTGAAGTGAAAGCTAAGA-TTTGATTGATAT--GA--------TT--------GACATATTACCCGCTCATTGTACTGTGATCAGCTAAATGGATCACAAGCA-CTTGC--GGTATGGATAC--TA-----A-----T-ACCCATC-------------------CCC-CT-CCCGTCCTTTCCCATTCATTTATTTATTTTCCTTAAT-TTTTG-TTGC--TGGCGAT---TTCTTT-AAGGAT-GT------ATGG-att
gi|8 : tgTCTTTTGGAATGTCAACCATACAAACATCCTTTAATGAGTATACAGGGAATATGCGTGGTTTAATGAATTTTAAAAAGTTAATCTTTTATAAAACATAGATAC------CT---------AGCTAAAATTTTTATTGAAATCAGAAAATGCAGTTTTCATGGGGATAT-TTACCTGC------TACTGTGATCAGCTAAGTGGATgactt
gi|9 : -TTTTG-TTTC--CGGCGATAT-TTTTCC-GA-AAT-GT------GTGG-ATT-C-CCTGTCTA-TCT-CATT----CC----------AATTTCGATTAATGTGATCCTTT----CACGCTTTTTGTAAGC--TTTATATATTTACTTTC---TA-C---C--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACTGTGGCTATTACCTCATCCTGATTCTGATTCCGATTTAATTTTTAATTTTGCGGTGATAATTATTCAGGAATGTATGGATTCGCT