lowQualScore : 11111 2222222 1 1111 111 1111 2222 2222222 111 11111 33333333333333 111 2 11 8888888888888888888 222222222 2 222222222 3 111 111111 11 22 111111 1 111 222222 1 222222222222222222222222222222 22222 11 11 2222 111 2222 333333333333 111 333333333333 11111 2222 1 111 111 222222222 22222222222222 1111 11111 11111111 111 111111 111 1111 2222222222 3333333 1 2 33333333333 111 22222222 1111 222 111 111 11 1 222222 11111 1 1 1 1 1
lowQualScore : 8 99999 1111111 6 99 6 5 7777 444 6 4444 88 6 6 6 1 99 2222 1111111 444 0 6 11111 77777777777777 999 3 6 6 55 4444444444444444444 99 6 99 6 444444444 4 99 6 99 3 99 222222222 6 3 6 111 444444 11 6 44 77 6 99 6 6 99 6 6 444444 6 99 1 000 888888 5 1 222222222222222222222222222222 5 77777 5 33 11 5 6666 5 000 5 99 6666 6 6 444444444444 99 111 6 6 6 888888888888 66666 1 6 6 5555 3 99999999 888 111 77 8888888 222222222 66666666666666 5 5 2222 5 44444 44444444 222 6 666 6 99 999999 999 666 111 6 6 99 6 6 4444 99 0000000000 3333333 3 0 6 777 6 6 6 11111111111 111 6 44444444 6 99 6 4444 99 99 99 888 333 1 888 333 6 55 8 6 0 8 333333 88 3 55555 8 0 8 0 0 6 2 0
lowQualScore : . ..... ....... . .. . . .... ... . .... .. . . . . .. .... ....... ... . . ..... .............. ... . . . .. ................... .. . .. . ......... . .. . .. . .. ......... . . . ... ...... .. . .. .. . .. . . .. . . ...... . .. . ... ...... . . .............................. . ..... . .. .. . .... . ... . .. .... . . ............ .. ... . . . ............ ..... . . . .... . ........ ... ... .. ....... ......... .............. . . .... . ..... ........ ... . ... . .. ...... ... ... ... . . .. . . .... .. .......... ....... . . . ... . . . ........... ... . ........ . .. . .... .. .. .. ... ... . ... ... . .. . . . . ...... .. . ..... . . . . . . . .
lowQualScore : 0 11111 7777777 7 22 7 5 0000 000 7 2222 88 7 7 7 0 22 2222 7777777 888 8 7 88888 00000000000000 000 5 7 7 88 2222222222222222222 22 7 22 7 888888888 2 22 7 22 7 22 000000000 7 3 7 777 000000 00 0 22 66 7 22 7 7 22 7 7 333333 7 22 4 000 777777 7 4 999999999999999999999999999999 7 33333 7 66 66 7 0000 7 000 7 22 2222 7 7 222222222222 22 777 7 7 7 777777777777 77777 7 7 7 5555 3 55555555 333 777 99 0000000 999999999 00000000000000 7 7 1111 7 33333 99999999 555 7 888 7 22 222222 555 888 777 7 7 22 7 7 2222 22 8888888888 3333333 3 0 7 555 7 7 7 77777777777 777 7 22222222 7 88 7 2222 22 22 22 333 333 7 333 555 7 00 0 0 8 0 000000 88 2 66666 0 6 0 0 0 2 5 0
consensus : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA----TTTN-ATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAAGTAACTG-AACGTG--GCG-T---CG------------GG--TCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA--TT-GA--TAAAGAA--AAAA-C-CTCAT-ACTTT-TATTTAT-TAGATA---TT-T-C--CGA--TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------CT-TTG-GA------AT-----AAGTT-TG--A-ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCATC-TACCCC--CAATTC-CTTCATTTTCT-C-TATC------------CC--CATT---GAG-GCATGTA-ATTAC-GCA---GGCA-CGT-ATC-----ATTTCAAAA-GAGAACA-TTAATNC--TA-GT--A--A--TTATCAAAA---TA---GATGC--GAG-CT-G--GAAAGT---------CATACATGCATG------T-------T-CG-ACT----GAGTTTC-AGGGA-----TGG---T--G-TGTTTAAGA-A-TA-T-T-TT-AAAC--AG------AAATA-TATAGC-T-TG---GTGAA-CA-TAAGTA--TC-AGGTAGCCTAAT-A----AT--GCTAG------G---ACGT-------GGTA-GTTACCAGAGTAT-AAA-G-AA-AC-GTGTGGAGACAGA-A-----------TTCC---CCA-A--------TGA-TCAAA-TGGA-TTTC----AGT--TT--CATACTT--TCCG-A-T---TATAT---GTA-A-G-CATTACTATA-AATATCAGGT-GGTGGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCA-CGCTACTTGCATGGACA-CCAACTTA
Reference ( gi|4 ) : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA----TTTT-ATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAAGTAA-TG-AACGTG--GCG-T--TCGT-----------GG--TCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGTTAA--TT-GA--TAAAGAA--AAAA-C-TTCAT-ACTTT-T-TTTAT-TAGATA---TT-T-C--CGA--TTAATAATGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------CT-TTG-GA------AT-----AAGTT-T---A-ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCATC-TACCCC--CAATTC-CTTCATTTTCT-C-TATC------------CC--CATT---GAG-GCATGTA-ATTAC-GCA---G-CA-CG--ATC-----ATTTCAAAA-GAGAACA-TTAATCA--TA-GT--A--A--TTATCAAAA---TA---GATGC--GAG-CT-G--GAAAGT---------CATACATGCATG------T-------T-CG-ACT----GAGTTTC-AGGGA-----TGG---T--G-TGTTTAAGA-A-TA-T-T-TT-AAAC--AG------AAATA-TATAGC-T-TG---GTGAA-CA-TAAGTA--TC-AGGTAGCCTAAT-A----AT--GCTAG------G---ACGT-------GGTA-GTTA-CAGAGTAT-AAA-G-AA-AC-GTGTGGAGACAGA-A-----------TTCC---CCA-A--------TGA-TCAAA-TGGA-TTTC----AGT--TT--CATACTT--TCCG-A-T---TATAT---GTA-A-G-CATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCA-CGTAACTTGCATGGACA-CCAACTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCCGGGTGGGCGAAG
gi|6 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA----TTTT-ATCAG-G-GCTAATGTCATC-C-ATCA--CTACGG-T-ACAGACTTT-------CAAAA---CATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCCC--AAGTAACTG-AACGTG--GCGGC--TCG------------GG--TCTTGTAT--TTAAA-ATG-A-G---AAGACCAAGTTAA--TTTGA--TAAAGAA--AAAA-C-TTCAT-ACTTTAT-TTTAT-TAGATA---TT-T-C--CGA--TTAAT-ATGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--ACGGGGGG---GGGGGGGG-----ACT-CAACT-TAC--------CT-T---GG------AT-----AAGTT-T---A-ACC-CG--CCACTT-GCTTT-AAATAATA-TCTTG---TGTCATC-TACCCC--CAATTC-C-TCATTTTCT-C-TATC------------CC--CATT---GAG-GCATGTA-ATTAC-GCA---G-CA-CG--ATC-----ATTTCAAAA-GAGAACA-TTAATC---TA-GT--A--A--TTATCAAAA---TA---GATGC--GAG-CT-G--GAAAGT---------CATACATGCATG------T-------T-CG-ACT----GAGTTTC-AGGGA-----TGG---T--G-TGTTTAAGATA-T--T-T-TT-AAACAAAG------AAATA-TATAGC-T-TG---GTGAA-CA-TAAGTA--TC-AGGTAGCCTAAT-A----AT--GCTAG------G---ACGT-------GGTA-GTTACCAGAGTAT-AAA-G-AA-AC-GTGTGGAGACAGA-A-----------T--C---CCA-A--------TGA-TCAAA-TGGA-TTTC----AGT--TT--CATACTT--TCCG-ATT---TATAT---GTA-A-G-CATTACTATA-AATATCAGGTGGG-GGTGTCAAT-A------ATG-TAATTA-CT---ATTCT-ATTTTCAGA-AAAG-T
gi|2 : ttGATTCGTGTAT-GAAA-TT-GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA----TTTA-ATCAG-G-GCTAATGTCATC-CCATCA--CTACG--TTACAGACTTT-------CAAAA--ACATTTACCAAATATT-A---CAATG---------T--C-GGATAA-AATCTCTCCAAAGTAACTG-AACGTG--GCG-T---CG------------GG--TCT-GTATATTTAAA-ATGTA-G---AAGACCAAGT-AA--TT-GA--TAAAGAA--AAAA-C-T-CAT-ACTTT-TATTTAT-TAGATA---TT-T-CTCCGA--TTAATA-TGAATATTTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA-TGT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACTATAC--------CT-TTG-GA------AT-----AAGTT-T---A-ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCATC-TACCCC--CAATTC-CT-CATTTTCT-C-TATC------------CC--CATT---GAG-GCATGTA-ATTAC-GCA---GGCA-CGT-ATC-----ATTTCAAAA-GAGAACA-TTAATAC--TA-GT--A--A--TTATCAAAAA--TA---GATGG--CAG-CT-G--GAAAGT---------CATACATGCATG------T-------TTCG-A-T----GAGTTTC-AGGGA-----TGG---T--G-TGTTTAAGA-A-TA-T-T-TTTAAAC--AG------AAAAA-TATAGC-T-TG---GTGAA-CA-TAAGTA--TC-AGGTAGCCTAA--A----AT--GCTAG------G---ACGT-------GGTA-GTTACCAGAGTAT-AAA-G-AA-AC-GTGTGGAGACAGA-A-----------TTCC---CCA-A--------TGA-TCAAA-TGGA-TTTC----AGT--TT--CATACTT--TCCG-A-T---TATAT---GTA-A-G-CATTACTATA-AATATCAGGT-GGTGGTGTCAAT-A------ATG-TAATTAGCT---A-TCT-A--TTCAGA-AAAG-TTGCA-CGCTACTTGCATGGA-A-CCAACT
gi|3 : GATTCGTGTAT-GAA--T--GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA----TTTA-ATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG------------C-GGATAA-AATCTCTCCAA-GTAACTG-AACGTG--GCG-T---CG------------GG--TCT-GTAT--TTAAA-AGT-A-G---AAGACCAAGT-AA--TT-GA--TAAAGAA--AA------TCATTACTTT-TATTTAT--AG-TA---TT-TTC--CGA--TTAATA-TGAATGTTTT-CCATA--G-GTCCAGTGG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA--GT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACT-TAC--------CT-TTG-GA------AT-----AAGTT-TG--A-ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCATC-TACCCC--CAATTC-CT-CATTTTCT-C-TATC------------CC--CATT---GAG-GCATGTA-ATTAC-GCA---GGCA-CGT-ATC-----ATT-CAAAA-GAGAACA-TTA-TAC--TA-GT--A--A--T-ATCAAAA---TA---GATGC--GAG-CT-G--GAAAGT---------CATACATGCATG------T-------T-CG-ACT----GAGTTTC-AGGGA-----TGG---T--G-TGTTTAA-A-A-TATT-T-TT-AAAC--AG------AAAAA-TATAGC-T-TG---GTGAA-CA-TAAGTA--TCAAGGTAGCCTAAT-A----AT--GCTAG------G---ACGT-------GGTA-GTTACCAGAGTAT-AAA-GAAA-AC-GTGTGGAGACAGA-A-----------TTCC---CCA-A--------TGA-TCAAA-TGGA-TTTC----AGT--TT--CATACTT--TCCGAA-T---TATAT---GTA-ACG-CATTACTAT--AATATCAGGT-GGTGGTGTCAAT-A------ATG--AATTAGCT---A-TCT-A-TGTCAGA-AAAG-TTGCA-CGCTACTTGCATGGACA-CCAACTatacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctccggtggggcgaag
gi|21 : GACTCGTGTAT-GAACTT--GCA-------TA--A-TTCT--AT--AAATGatacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccggtggggcgaa
gi|5 : gtcATTCGTGTATTGAAA-TTAGTGACCTCGTTATTAGTGCTTTATACAAATGAGATGATAACTCGCCTCTCTATTAGATTTTTTGATCAG-GCGTCTATATTCTCGCTTTCAAACTACAGAT-ACAG-CGTTAATCGCACAAAACTACATTTACCAAG-ATT-GAGCCAGTG---------TTCC-GGAAAA-C-TCTCTCCAGTGTAAGTGGAACGTG--GCG-T-----------------GGATTCT-GTAT--TTATTTATG-C-A---GAGACCAAGT-AAGTTT-TA--TAAAAAA--AAAAACACTCAT-ACTTT-TATTTACATGAATAACTTT-C-C--CGAAATTATTAGTATCTAATTT-CCATA--GCGAGCAG-GG--ATGGTAGCCGCAGCAGATTC-TTC--TTATA-TGT--AC-GAGGG---GAGGGAGG-----ACT-CAACT-TAC--------CT-TTTTGA------AT-----AAGTTGTG--A-ACCTCG--CCACT--GC-TT----TAATA-TCTTG---TGTCATCCTACCCCAGCAATCCGCTCTTTTTTCT-CCTATCCCTTGACACAGTCT--CATTTTAGAGTATACGTACGTTACCGCAATGG-TA-AGTTATCCAACTATACTAAAATGAAGACT-ATAA-CAGATACGTCAA--A--TTATCATAAGAGTA---GATGC--GAG-CT-GAGGAATGTGTTAAACTACATACATGCTTG------TAGTTGCTT-CG-ACT----AAGTTTCTAGGAACGATATGG---TCAGCTGTTTAAGA---TA-TAT-TT-AAAC--AGTACACAAAATA-TATAGCATATG---GTGAAACAGTAAGT---TC-AG-TCGCC-AAT-ACAGAAT--GCTAGACTCTCG---ACATTCGATTCGGTAAGTTA-CCGAG-ATCAAA-T-AATACCGTGTATTGACAGA-ACAGATAATAAATTCCGTCCCA-AGTAAACCTTGA-TCAA--TGGA-TTTCCCTTCGTTGTT--CATAATTACTTCG-C-TTTCTATATC--GTATA-A-CATTAACATACAATATgctaattttattccatcactaggaacagactgtcaaaacaaa
gi|7 : -T--GCA-------TATCA-TGCT--ATA-AA-TGAAA----AATGC---TTTC-ATTA----TTTC-ATCAG-G-GCTAATGTTTTA-CCATCG--CTACG--A-ACAGACTAT-------CAAAA--CTAA--ACCAAA-TTTTA---CAATGCACGTGTAAT--T-GGATAACA-T-TATCCAAAGTAG-TA-TTTGTAT-GCG-CA-GCGG-----------GG--TCT-GCAT--TTAAA-A------------ACCAAGTAAT--TT-GA--TTAA--A--AAAA-C-CT----ACTTT-TATTTAT-TAGATA---TTGC-C--CGA--TTA-TA-TAAATTATTTTCCATA--G-ATCCAG-GG--ATGGAGGC-GCA-----------------GA-TGC--ACTGGGGGCCAGGGGGGGG-------------------------------G-GG------TT-----AAGTT-TG--A-AAC-TA--CCATTTTGT-TT-------TT-CTTTG---TGTCATC-TACTCT--CTATTC-CT-CATTTTTT-C-TGTC------------CC--CATT---GAG-ATATGTA-ATTAC-GCA---GGCA-CGT-ATC-----ATTTCAAAA-GAGAA------ATTA--TATGT--A--AACTTATCAAAA---TA---GATGC--GAG-AT-G--AGGAAT---------CATGCATGTATG------T-------T-CG-ACT----GAGTTTT-AGGGA-----CGG---TC-A-TGTTTATGA-A-TA-T-T-GT-GAAC--AG------AAA----ATACC-T-TG---GTGAT-CA-TCAGTA--GT-GGGTATCCTGAT-A----AT--ACCAG------G---ACGT-------GGTA-G-CA-CAGAGTAT-AAA-G-AG-AA-GTGTGGAGACATA-A-----------TTCA---CCA-A--------GTA-TCAGC-AGGT-AATC----AAT--TC--CATACTC--TCCG-A-TTTATGTAT---GTAGG-G-CATTACTATA-AATAT-AAGT-AG-GG-GTCAAT-AATATACATG-TAATTAACT---ATTCT-ATTTTCAGA-AAttcacgcgttg
gi|21 : gtcaacttgtgtaacaactC-ATAA----TTCT-ATAAATG-GCTAATTTTATT-CCATCA--CTAGG--A-ACAGACTGT-------CAAAA--
gi|17 : gtcgactcgtgtatgaacttgA-ATT-A---CAATG---------T--TTGGATAA-C-TCTCTCCAAA---A-TG-GACGTGTGGCA-TATTTGTATGTGCAGCCAGG--TCA-GTAT--TTTAA-ACG-ATGCACAAGACCAGGTAAT--TT-GATTTAAAAAAACAAAA-C-----T-ACTTT-TATTTAT-TAAATA---Tcaaa
gi|1 : TTC-CCATAAAG-GTCCAA-GGGAATGGAAGC-TCA-CGTGTTA-CCTATTAAAACTGCTCAC-GGGGG---AGTTAGT------ACT-CAAATCTAC--------CTCTTG-GACATTTAAC-----CAGTT-TTCAACACC-CAGCCCACTCCGC-TT----TAATA-TCTTG---TGTCAT--TACCCC--CAATTC---TCATTATCTTC-AAAC------------CCATCATT---GGA-GTATGTA-CTT-C-GCAA--G-CAACGC-ATA-----ATTTCAAAA-GAGAACACTTAATAC--TA-GT--ATAA--TTATCAAAA---CATAGGATGCCTGAGACTCG--GGAAGT---------CAAACATGCATGGATTTTT-------T-CGCACT----GAGTTTC-AGGGC-----TGGCTGT--G-TATTTAAGA-ACTA-T-CATT-AAAC--AG------AAATAATATAGC-C-TATGTGTGAA-CA-TAAGTAATCC-AGGTAGCCTAATTA----ATCGGCTAG------GTCGACGTAAC----GGTATGTTG-AGAAGTAT-AAAAG-AA-AC-GTTAGGAGACAGACA-----------TTCC---CCACA--------TGAATCAAAATGGAATTTC----AGC--TTTCCAT-CTT--TCCG-A-T---T-TATAGGGTA-A-GGCATTACTATGCAAT-TCAGAG-GG-GGTGTCAATGA------ATGCTAATTAGCCGTAATTCGAATTTTCAGAGAAAGATTGCACCGT--CTTGCATGGACACCCAACT
gi|20 : t-GGGGG---GGGGGGGG-----GCTACAACT-CACTAGGATCTCT-TTA-CA------ATATTTGAGGAT-T---C-ATC-CGA-CCA--T-A--TT-AAATAATAGTCATACACTGTCATT-Tatagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggttggggtgcaagaaggaaagtatttccaaatcattaacgtccgtctgacactacagcagattaaacatacttgtcagtcagaactgctatcgacactcgatattgatcaagccaaacattaattgaaaaggtcccgtggaaactgatgcaaatagatgctgcacctatatctggtacccgtaatgtattatatattatgaattagtagttaacattttagaattacaacaacacttaaaaaatatcaagatagggaagcggatcgtcttcttttgtgatacatttaattccatatttgataagtgcgattgctcgttcacaacaggcaatatctctgaggctttctgcactgttggttatgaccgctttgaatataattagcccggaagtttaaaattaaatctacgcaagcgcactcagcgtcttacccggtgatcaagtaaagcataactcatgtttttcggaaataggc
gi|1 : ggggTGC--GAA--------AAAAT---------C---CATGCATG------T-------T-TG-ACTTCCCGAGTCTC-AGGCA-----TCC---T--A-TGTTT
gi|14 : tttcccataaaggtccaagggaatggaagctcacgtgttacctattaaaactgctcacgggggagttagtactcaaatctacctcttggacatttaaccagttttcaacacccagcccactccgctttaatatcttgtgtcattacccccaattctcattatcttcaaacccatcattggagtatgtacttcgcaagcaacgcataatttcaaaagagaacacttaatactagtataattatcaA-CGTAACTTGCATGGACA-CCAACTTActgagtttcagggctggctgtgtatttaagaactatcattaaacagaaataatatagcctatgtgtgaacataagtaatccaggtagcctaattaatcggctaggtcgacgtaacggtatgttgagaagtataaaagaaacgttaggagacagacattccccacatgaatcaaaatggaatttcagctttccatctttccgatttatagggtaaggcattactatgcaattcagagggggtgtcaatgaatgctaattagccgtaattcgaattttcagagaaagattgcaccgtcttgcatggacacccaactatagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggttggggtgcaagaaggaaagtatttccaaatcattaacgtccgtctgacactacagcagattaaacatacttgtcagtcagaactgctatcgacactcgatattgatcaagccaaacattaattgaaaaggtcccgtggaaactgatgcaaatagatgctgcacctatatctggtacccgtaatgtattatatattatgaattagtagttaacattttagaattacaacaacacttaaaaaatatcaagatagggaagcggatcgtcttcttttgtgatacatttaattccatatttgataagtgcgattgctcgttcacaacaggcaatatctctgaggctttctgcactgttggttatgaccgctttgaatataattagcccggaagtttaaaattaaatctacgcaagcgcactcagcgtcttacccggtgatcaagtaaagcataactcatgtttttcggaaataggc
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGAATTAAACATACATTGGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACCAAAACACGTAAAATCAAGATGGGAAGGGGAAGTCGTCTCTTTTTGATAACATTTATTTTCCATGATTTGTAAGCGCGATTGGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTTGTATGACGCTTCTTGAATATAATACCCGGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGCGAAAAATAAACTCACGTTTTCGGAAAGGC
Unaligned ( gi|9 ): GAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACTTTTTATAAGGCTGGGTGGTGTTTTAAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAAAAGC
Unaligned ( gi|10 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGGAATGTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCATATTATGTAGATTATATTGGTTACACAAAACACGTTAAAATCAAGATGGGAAGGGGGAAGTCGTTCTTTTGATAACATTTATTTTCCATATTTTGTAAGCGCGATGCCGTACATACGGCAATTATCTCTGCGTGCTTCTGCACTGCTGTAATGACGCTTCTTGAATTAATACCCGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTCGGAA
Unaligned ( gi|11 ): AGGAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACGATATTGATCAAGCAACTTTTTATAAGGCTGGTGTGGTGTTTTAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAAATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAA
Unaligned ( gi|12 ): AGGAGTAGGTCGATTTCCAGACCCCAGAAGTGTCTGTCTGACATACTGGACTAGACGTCATATATTTGATAGTGAACAAGCGACCCCGACATTTTATAAATCTGACTGTGCTAAAACATGGAATTCTAAAAGGCCTAGAGTAAATTAAGCTCCTAAGGAAATTCATGCAATATATAATATGGGCTATTTTCTGTTACAAAACACGTAATGGGAAGGGAGAGGTCTCAGCTTTTGATAATCATGCTGATTTTCCGTTATTTTTACATGTAGCGC
Unaligned ( gi|13 ): AGGTATTTCCAGAATTCATAAGCGTCTGTCTGACAAACAGAATTTGACGTACATGTATATTGTGTCAGAACTGGATATTGATCAAGCAACATTTTATAAGGCTGATTGTGGTAGAACACAGGGGTTTTAAAAGATCCCGAGGAAATTTATGCAATATATATAATATACATGTAGATTAA
Unaligned ( gi|15 ): ATATTCTCGGCGGCTGTTCTGCACGTGTGTGTCGTAATGTACAGCTTACCCCTCCTGAATACTAATAACCCGGAATGTTTAGGAAAAGTTAGATATCTCACGGCAACGCGCCACTACGTTCGTGCGATCAAGGAATAGATAACTCACGTTTTCCGGAAAGGTT
Unaligned ( gi|16 ): ATGTATATTGTGCCAGATCTTGCTTACTGATCAAGCGACATTTTTGCTAGGACACAGGGAAATCTACGCAATATATAGTATATATTAGTTTTGGTCACAAAACACGTAAACTCAAGATTAGAAGTGTGTCCTCTTTTTTATAACAT
Unaligned ( gi|18 ): AAGGTAGGTATTTCCAGAATCCATAACCCTGACATACAGAATTAAACTTACATCTATATTGTGTCAGAACATGCTTACTACAATGATATATTGATTAA
Unaligned ( gi|19 ): TACACAAACCTTGACAACACTGGTTACATCCACATATCTTGATCATAGCAACATTTTTATAAGGCTGGTTGTTGGTGTTTTAAAAGGCCCAGAGTG
Unaligned ( gi|22 ): CTCATTTAGGGTATACGTACGTTGATCACAATGTTAACTTCGCCAATTAATACTTTTAAAATG
Alignments
lowQualScore : 11 1111111 1 1111 111 11111 1111 1111111 111 111 22222222222222 111 222222222 222222 1111 111111111 1 1 111 11 111 11111 1 1 22222 1 11111111 111111 2222222222 11 1 11 1111 333333333333 111 11 11111 111111 111 111 11 222222222 3333333 11111 111 11 1 111111 11 111 111111 222222 2222222 1 1 22222222222 111 22222222 1111 222 111 111 11 1 111111 111
lowQualScore : 6 88 33 8888888 5 77 5 2 4444 111 5 44444 1 5 5 5 77 7777 8888888 111 5 5 000 99999999999999 555 222222222 777777 5 77 3333 5 5 77 5 555555555 1 77 7 000 1 5 5 88 0 5 1 5 5 000 6 99 66666 1 6 1 5 77 5 5 77 5 5 1 77 5 77 0 888 55555 5 0 88888888 5 5 0 444444 5 8888888888 5 11 0 0 5 99 5 888 5 77 8888 5 5 777777777777 000 5 5 5 77 5 22 44444 0 5 5 5 888888 5 77 77 77 555 000 77 5 33 222222222 5555555 5 5 5 44444 000 33 5 5 5 1 5 5 5 77 666666 11 5 5 000 5 5 77 5 555555 77 666666 8888888 5 5 1 5 1 5 5 5 77777777777 5 000 5 00000000 5 5 5 2222 77 77 77 555 000 0 555 666 11 5 6 999999 6 1 111 7 6 7 6 8 333 8
lowQualScore : . .. .. ....... . .. . . .... ... . ..... . . . . .. .... ....... ... . . ... .............. ... ......... ...... . .. .... . . .. . ......... . .. . ... . . . .. . . . . . ... . .. ..... . . . . .. . . .. . . . .. . .. . ... ..... . . ........ . . . ...... . .......... . .. . . . .. . ... . .. .... . . ............ ... . . . .. . .. ..... . . . . ...... . .. .. .. ... ... .. . .. ......... ....... . . . ..... ... .. . . . . . . . .. ...... .. . . ... . . .. . ...... .. ...... ....... . . . . . . . . ........... . ... . ........ . . . .... .. .. .. ... ... . ... ... .. . . ...... . . ... . . . . . ... .
lowQualScore : 7 99 66 6666666 7 99 7 0 2222 777 7 33333 0 7 7 7 99 7777 6666666 000 7 7 000 00000000000000 000 444444444 333333 7 99 7777 7 7 99 7 999999999 4 99 1 000 7 7 7 11 7 7 7 7 7 000 7 22 77777 7 7 0 7 99 7 7 99 7 7 4 99 7 99 0 888 00000 0 0 11111111 0 0 1 444444 0 0000000000 0 99 1 0 0 44 0 888 0 99 4444 7 7 111111111111 000 7 7 7 99 7 99 33333 1 7 7 7 000000 7 99 99 99 777 000 99 7 66 999999999 0000000 7 7 7 33333 000 66 7 0 7 4 7 7 7 99 444444 11 7 7 000 7 7 99 7 999999 99 444444 6666666 7 7 4 7 4 7 7 7 11111111111 7 000 7 77777777 7 7 7 1111 99 99 99 999 000 1 777 000 66 3 7 222222 7 0 777 3 7 3 7 0 666 0
consensus : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA--TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTA-G--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTTA
Reference ( family-2076 ) : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA--TT-GAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATNCTA-G--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGGTGGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTTA
gi|1 : TTC-CCATAAAG-GTCCAA-GGGAATGGAAGC-TCA-CGTGTTA-CCTATTAAAACTGCTCAC-GGGGG---AGTTAGT------ACT-CAAATCTAC--------C-TCTTGGACATTTAACCAGTT-TTCAAC-----ACC-CAGCCCACTCCGC-TT----TAATA-TCTTG---TGTCAT--TACCCC--CAATTC---TCATTATCTT-CAAACCCAT----------CATT---GGA-GTATGTA-CTT--CGCA--AGCAACG-CATA-----ATTTCAAAA-GAGAAC-ACTTA---ATACTA-GTAT--AA--TTATCAAAA---CATAGGATGCCTGAGACTC-GGGAAGT---------CAAACATGCATGGATTTT-TT-CGCACTGAGTTTC-AGGG-----CTGGCTGT--G-TATTTAAGAACTA-T-CATT-AAAC--AG------AAATAATATAGC-C-TATGTGTG-AACA-TAAGTAATCC-AGGTAGCCTAATT----AATCGGCTAGGTC---GACGTAAC----GGT-ATGTTG--AGAAGTATAAAAG-AA-A-CGTTAGGAGACAG-----------ACATTC---CCCACA--------TGAATCAAAATGGAATTTC----AGCTT--TCCAT-CTT--TCCG-A-T---T-TATAGGGTA-AGGCATTACTATGCAAT-TCAGA-GGGGGTGTCAATGA------ATGCTAATTAGCCGTAATTCGAATTTTCAGAGAAAGATTGCACCGT-CTTGCATGGACACCCAACT
gi|14 : tACGTAACTTGCATGGACA-CCAACTTAatagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggttggggtgcaagaaggaaagtatttccaaatcattaacgtccgtctgacactacagcagattaaacatacttgtcagtcagaactgctatcgacactcgatattgatcaagccaaacattaattgaaaaggtcccgtggaaactgatgcaaatagatgctgcacctatatctggtacccgtaatgtattatatattatgaattagtagttaacattttagaattacaacaacacttaaaaaatatcaagatagggaagcggatcgtcttcttttgtgatacatttaattccatatttgataagtgcgattgctcgttcacaacaggcaatatctctgaggctttctgcactgttggttatgaccgctttgaatataattagcccggaagtttaaaattaaatctacgcaagcgcactcagcgtcttacccggtgatcaagtaaagcataactcatgtttttcggaaataggc
gi|17 : A-ATT-A---CAATG---------T--TTGGATAA-C-TCTCTCCAAAATGGACGTGTGGCATATTTG-TATGTG--CAG--C-CA-GGTCA-GTAT--TTTAA-ACG-ATGCACAAGACCAGGT-AA--TTTGATTTAAAAAAACAAAA-C-----T-ACTTTTATTTAT-TAA-ATA---Ttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccggggggcgaag
gi|2 : GATTCGTGTAT-GAAA-TT-GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACG--TTACAGACTTT-------CAAAA--ACATTTACCAAATATT-A---CAATG---------T--C-GGATAA-AATCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTATATTTAAA-ATGTA-G---AAGACCAAGT-AA--TT-GAT---AAAGAA-AAAA-C--TCAT-ACTTTTATTTAT-TAG-ATA---TT-TCTCCGA-----TTAATA-TGAATATTTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA-TGT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACTATAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-CATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTA-G--T--AA--TTATCAAAAA--TA---GATGG--CAG-CT--GGAAAGT---------CATACATGCATG-------TTTCG-A-TGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TTTAAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA------AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGGTGGTGTCAAT-A------ATG-TAATTAGCT---A-TCT-A--TTCAGA-AAAG-TTGCACGCTACTTGCATGGA-A-CCAACT
gi|20 : -GGGGG---GGGGGGGG-----GCTACAACT-CACTAGGATCTC-T-TTACA------ATA--TT-T--GAGGATTCATC-CGA-CCA--T-A--TT-AAATAATAGTCATACACTGTCAT-TTatacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctccggtggggcgaag
gi|21 : ggggGACTCGTGTAT-GAACTT--GCA-------TA--A-TTCT--AT--AAATG
gi|21 : gtcC-ATAA-----TTCTATAAATG-GCTAATTTTATT-CCATCA--CTAGG--A-ACAGACTGT-------CAAAA--gctaattttattccatcactaggaacagactgtcaaaacaaa
gi|3 : gtcgactcgtgtatgaacttgGATTCGTGTAT-GAA--T--GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG------------C-GGATAA-AATCTCTCCAA---------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-AGT-A-G---AAGACCAAGT-AA--TT-GAT---AAAGAA-AA------TCATTACTTTTATTTAT--AGTAT----TT-TC--CGA-----TTAATA-TGAATGTTTT-CCATA--G-GTCCAGTGG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA--GT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-CATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATT-CAAAA-GAGAAC-A-TTA----TACTA-G--T--AA--T-ATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAA-AA-TATT-T-TT-AAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TCAAGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAGAAA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCGAA-T---TATAT---GTA-ACGCATTACTAT--AATATCAGGTGGTGGTGTCAAT-A------ATG--AATTAGCT---A-TCT-A-TGTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTcaaa
gi|4 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAA------TG-AACGTG--GCG--TTCGTGGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGTTAA--TT-GAT---AAAGAA-AAAA-C-TTCAT-ACTTTT-TTTAT-TAG-ATA---TT-TC--CGA-----TTAATAATGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--G-C-ACG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---ATCATA-G--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTA-CAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGTAACTTGCATGGACA-CCAACTTAatacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccggtggggcgaa
gi|5 : ATTCGTGTATTGAAA-TTAGTGACCTCGTTATTAGTGCTTTATACAAATGAGATGATAACTCGCCTCTCTATTAGATTTTTTGATCAG-GCGTCTATATTCTCGCTTTCAAACTACAGAT-ACAG-CGTTAATCGCACAAAACTACATTTACCAAG-ATT-GAGCCAGTG---------TTCC-GGAAAA-C-TCTCTCCAGT--------GTAAG-----TGGAACGTG--GCG--T-GG-ATTCT-GTAT--TTATTTATG-C-A---GAGACCAAGT-AAGTTT-TAT---AAAAAA-AAAAACACTCAT-ACTTTTATTTACATGA-ATAACTTT-CC--CGAAATTATTAGTA-TC--TAATTT-CCATA--GCGAGCAG-GG--ATGGTAGCCGCAGCAGATTC-TTC--TTATA-TGT--AC-GAGGG---GAGGGAGG-----ACT-CAACT-TAC--------CTT-TTTGA------ATAAGTTGT--GA------ACCTCG--CCAC-T-GC-TT----TAATA-TCTTG---TGTCATCCTACCCCAGCAATCCGCTCTTTTTTC-TCCTATCCCTTGACACAGTCTCATTTTAGAGTATACGTACGTTACCGCAATGGT-AAGTTATCCAACTATACTAAAATGAAGACTA-TAACAGATAC---G--TCAAA--TTATCATAAGAGTA---GATGC--GAG-CTGAGGAATGTGTTAAACTACATACATGCTTGTAGTTGCTT-CG-ACTAAGTTTCTAGGAACGATATG---GTCAGCTGTTTAAG-A-TA-TAT-TT-AAAC--AGTACACAAAAT-ATATAGCATATG---GTGAAACAGTAAGT---TC-A-GTCGCC-AA-TACAGAAT--GCTAGACTCTCGACATTCGATTCGGTAA-GTTACC-G-AG-ATCAAAT-AATACCGTGTATTGACAGAACAGATAATAA-ATTCCGTCCCA-AGTAAACCTTG-ATC--AATGG-ATTTCCCTTCG--TTGTTCATAATTACTTCG-C-TTTCTATATC--GTATA-ACATTAACATACAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctccgggtgggcgaag
gi|6 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-C-ATCA--CTACGG-T-ACAGACTTT-------CAAAA---CATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCCC--AA--------GTAAC-----TG-AACGTG--GCGGCT-CG-GGTCTTGTAT--TTAAA-ATG-A-G---AAGACCAAGTTAA--TTTGAT---AAAGAA-AAAA-C-TTCAT-ACTTTATTTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--ACGGGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-T--GG------ATAAGTT-T---A------ACC-CG--CCACTT-GCTTT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-C-TCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA---GC-ACG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---AT-CTA-G--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAG-A-TATT-T-TT-AAACAAAG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-AT-----CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-ATT---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGGGGGTGTCAAT-A------ATG-TAATTA-CT---ATTCT-ATTTTCAGA-AAAG-Tttcacgcgttg
gi|7 : tt-T--GCA-------TATCA-TGCT--ATA-AA-TGAAA----AATGC---TTTC-ATTA-----TTTCATCAG-G-GCTAATGTTTTA-CCATCG--CTACG--A-ACAGACTAT-------CAAAA--CTAA--ACCAAA-TTTTA---CAATGCACGTGTAAT--T-GGATAACA-T-TATCCAAA--------GTAGTATT--TG-TATGCGCAGCG-----G-GGTCT-GCAT--TTAAA-A------------ACCAAGT-AA--TTTGAT---TAA--A-AAAA-C-CT----ACTTTTATTTAT-TAG-ATA---TTGCC--CGA-----TTA-TA-TAAATTATTTTCCATA--G-ATCCAG-GG--ATGGAGGC-GCA-----------------GA-TGC--ACTGGGGGCCAGGGGGGGG--------------------------------GGG------TTAAGTT-T--GA------AAC-TA--CCATTTTGT-TT-------TT-CTTTG---TGTCAT-CTACTCT--CTATTC-CT-CATTTTT-T-CTGTCCC------------CATT---GAG-ATATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAA--A-TTA-------TATG--T--AAACTTATCAAAA---TA---GATGC--GAG-AT--GAGGAAT---------CATGCATGTATG-------TT-CG-ACTGAGTTTT-AGGG-----ACG---GTC-A-TGTTTATGAA-TA-T-T-GT-GAAC--AG------AAA----ATACC-T-TG---GTG-ATCA-TCAGTA--GT-GGGTATCCTGA-T----AAT--ACCAG------GACGT-------GGT-A-G-CA-CAG-AGTAT-AAAG-AG-A-AGTGTGGAGACAT-----------A-ATTC---ACCA-A--------GT-ATC-AGCAGG-TAATC----AA--T--TCCATACTC--TCCG-A-TTTATGTAT---GTAGG-GCATTACTATA-AATAT-AAGTAG-GG-GTCAAT-AATATACATG-TAATTAACT---ATTCT-ATTTTCAGA-AA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGAATTAAACATACATTGGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACCAAAACACGTAAAATCAAGATGGGAAGGGGAAGTCGTCTCTTTTTGATAACATTTATTTTCCATGATTTGTAAGCGCGATTGGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTTGTATGACGCTTCTTGAATATAATACCCGGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGCGAAAAATAAACTCACGTTTTCGGAAAGGC
Unaligned ( gi|9 ): GAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACTTTTTATAAGGCTGGGTGGTGTTTTAAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAAAAGC
Unaligned ( gi|10 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGGAATGTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCATATTATGTAGATTATATTGGTTACACAAAACACGTTAAAATCAAGATGGGAAGGGGGAAGTCGTTCTTTTGATAACATTTATTTTCCATATTTTGTAAGCGCGATGCCGTACATACGGCAATTATCTCTGCGTGCTTCTGCACTGCTGTAATGACGCTTCTTGAATTAATACCCGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTCGGAA
Unaligned ( gi|11 ): AGGAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACGATATTGATCAAGCAACTTTTTATAAGGCTGGTGTGGTGTTTTAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAAATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAA
Unaligned ( gi|12 ): AGGAGTAGGTCGATTTCCAGACCCCAGAAGTGTCTGTCTGACATACTGGACTAGACGTCATATATTTGATAGTGAACAAGCGACCCCGACATTTTATAAATCTGACTGTGCTAAAACATGGAATTCTAAAAGGCCTAGAGTAAATTAAGCTCCTAAGGAAATTCATGCAATATATAATATGGGCTATTTTCTGTTACAAAACACGTAATGGGAAGGGAGAGGTCTCAGCTTTTGATAATCATGCTGATTTTCCGTTATTTTTACATGTAGCGC
Unaligned ( gi|13 ): AGGTATTTCCAGAATTCATAAGCGTCTGTCTGACAAACAGAATTTGACGTACATGTATATTGTGTCAGAACTGGATATTGATCAAGCAACATTTTATAAGGCTGATTGTGGTAGAACACAGGGGTTTTAAAAGATCCCGAGGAAATTTATGCAATATATATAATATACATGTAGATTAA
Unaligned ( gi|15 ): ATATTCTCGGCGGCTGTTCTGCACGTGTGTGTCGTAATGTACAGCTTACCCCTCCTGAATACTAATAACCCGGAATGTTTAGGAAAAGTTAGATATCTCACGGCAACGCGCCACTACGTTCGTGCGATCAAGGAATAGATAACTCACGTTTTCCGGAAAGGTT
Unaligned ( gi|16 ): ATGTATATTGTGCCAGATCTTGCTTACTGATCAAGCGACATTTTTGCTAGGACACAGGGAAATCTACGCAATATATAGTATATATTAGTTTTGGTCACAAAACACGTAAACTCAAGATTAGAAGTGTGTCCTCTTTTTTATAACAT
Unaligned ( gi|18 ): AAGGTAGGTATTTCCAGAATCCATAACCCTGACATACAGAATTAAACTTACATCTATATTGTGTCAGAACATGCTTACTACAATGATATATTGATTAA
Unaligned ( gi|19 ): TACACAAACCTTGACAACACTGGTTACATCCACATATCTTGATCATAGCAACATTTTTATAAGGCTGGTTGTTGGTGTTTTAAAAGGCCCAGAGTG
Unaligned ( gi|22 ): CTCATTTAGGGTATACGTACGTTGATCACAATGTTAACTTCGCCAATTAATACTTTTAAAATG
Alignments
lowQualScore : 11 1111111 1 1111 111 11111 1111 1111111 111 111 22222222222222 111 222222222 222222 1111 111111111 111 11 111 11111 1 1 22222 1 11111111 111111 2222222222 11 1 11 1111 333333333333 111 11 11111 111 111 111 11 222222222 3333333 11111 111 11 1 111111 11 111 111111 222222 2222222 1 1 22222222222 111 22222222 1111 222 111 111 11 1 111111 111
lowQualScore : 6 88 33 8888888 5 77 5 2 4444 111 5 44444 1 5 5 5 77 7777 8888888 111 5 5 000 99999999999999 555 222222222 777777 5 77 3333 5 5 77 5 555555555 5 5 5 000 1 5 5 88 0 5 1 5 5 000 6 99 66666 1 6 1 5 77 5 5 77 5 5 1 77 5 77 0 888 55555 5 0 88888888 5 5 0 444444 5 8888888888 5 11 0 0 5 99 5 888 5 77 8888 5 5 777777777777 000 5 5 5 77 5 22 44444 0 5 5 5 000 1 5 77 77 77 555 000 77 5 33 222222222 5555555 5 5 5 44444 000 33 5 5 5 1 5 5 5 77 666666 11 5 5 000 5 5 77 5 555555 77 666666 8888888 5 5 1 5 1 5 5 5 77777777777 5 000 5 00000000 5 5 5 2222 77 77 77 555 000 0 555 666 11 6 3 6 999999 6 1 111 7 6 7 6 8 333 8
lowQualScore : . .. .. ....... . .. . . .... ... . ..... . . . . .. .... ....... ... . . ... .............. ... ......... ...... . .. .... . . .. . ......... . . . ... . . . .. . . . . . ... . .. ..... . . . . .. . . .. . . . .. . .. . ... ..... . . ........ . . . ...... . .......... . .. . . . .. . ... . .. .... . . ............ ... . . . .. . .. ..... . . . . ... . . .. .. .. ... ... .. . .. ......... ....... . . . ..... ... .. . . . . . . . .. ...... .. . . ... . . .. . ...... .. ...... ....... . . . . . . . . ........... . ... . ........ . . . .... .. .. .. ... ... . ... ... .. . . . ...... . . ... . . . . . ... .
lowQualScore : 7 99 66 6666666 7 99 7 0 2222 777 7 33333 0 7 7 7 99 7777 6666666 000 7 7 000 00000000000000 000 444444444 333333 7 99 7777 7 7 99 7 999999999 7 7 0 000 7 7 7 11 7 7 7 7 7 000 7 22 77777 7 7 0 7 99 7 7 99 7 7 4 99 7 99 0 888 00000 0 0 11111111 0 0 1 444444 0 0000000000 0 99 1 0 0 44 0 888 0 99 4444 7 7 111111111111 000 7 7 7 99 7 99 33333 1 7 7 7 000 4 0 99 99 99 777 000 99 7 66 999999999 0000000 7 7 7 33333 000 66 7 0 7 4 7 7 7 99 444444 11 7 7 000 7 7 99 7 999999 99 444444 6666666 7 7 4 7 4 7 7 7 11111111111 7 000 7 77777777 7 7 7 1111 99 99 99 999 000 1 777 000 66 7 3 7 222222 7 0 777 3 7 3 7 0 666 0
consensus : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTTA
Reference ( family-2076 ) : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTTA
gi|1 : TTC-CCATAAAG-GTCCAA-GGGAATGGAAGC-TCA-CGTGTTA-CCTATTAAAACTGCTCAC-GGGGG---AGTTAGT------ACT-CAAATCTAC--------C-TCTTGGACATTTAACCAGTT-TTCAAC-----ACC-CAGCCCACTCCGC-TT----TAATA-TCTTG---TGTCAT--TACCCC--CAATTC---TCATTATCTT-CAAACCCAT----------CATT---GGA-GTATGTA-CTT--CGCA--AGCAACG-CATA-----ATTTCAAAA-GAGAAC-ACTTA---ATACTAGTAT--AA--TTATCAAAA---CATAGGATGCCTGAGACTC-GGGAAGT---------CAAACATGCATGGATTTT-TT-CGCACTGAGTTTC-AGGG-----CTGGCTGT--G-TATTTAAGAACTA-T-CATT-AAAC--AG------AAATAATATAGC-C-TATGTGTG-AACA-TAAGTAATCC-AGGTAGCCTAATT----AATCGGCTAGGTC---GACGTAAC----GGT-ATGTTG--AGAAGTATAAAAG-AA-A-CGTTAGGAGACAG-----------ACATTC---CCCACA--------TGAATCAAAATGGAATTTC----AGCTT--TCCAT-CTT--TCCG-A-T---T-TATAGGGTA-AGGCATTACTATGCAAT-TCAGAG-GG-GGTGTCAATGA------ATGCTAATTAGCCGTAATTCGAATTTTCAGAGAAAGATTGCACCGT-CTTGCATGGACACCCAACT
gi|14 : tACGTAACTTGCATGGACA-CCAACTTAatagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggttggggtgcaagaaggaaagtatttccaaatcattaacgtccgtctgacactacagcagattaaacatacttgtcagtcagaactgctatcgacactcgatattgatcaagccaaacattaattgaaaaggtcccgtggaaactgatgcaaatagatgctgcacctatatctggtacccgtaatgtattatatattatgaattagtagttaacattttagaattacaacaacacttaaaaaatatcaagatagggaagcggatcgtcttcttttgtgatacatttaattccatatttgataagtgcgattgctcgttcacaacaggcaatatctctgaggctttctgcactgttggttatgaccgctttgaatataattagcccggaagtttaaaattaaatctacgcaagcgcactcagcgtcttacccggtgatcaagtaaagcataactcatgtttttcggaaataggc
gi|17 : A-ATT-A---CAATG---------T--TTGGATAA-C-TCTCTCCAAAATGGACGTGTGGCATATTTG-TATGTG--CAG--C-CA-GGTCA-GTAT--TTTAA-ACG-ATGCACAAGACCAGGT-AA-TTTGATTTAAAAAAACAAAA-C-----T-ACTTTTATTTAT-TAA-ATA---Ttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccggggggcgaag
gi|2 : GATTCGTGTAT-GAAA-TT-GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACG--TTACAGACTTT-------CAAAA--ACATTTACCAAATATT-A---CAATG---------T--C-GGATAA-AATCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTATATTTAAA-ATGTA-G---AAGACCAAGT-AA-TT-GAT---AAAGAA-AAAA-C--TCAT-ACTTTTATTTAT-TAG-ATA---TT-TCTCCGA-----TTAATA-TGAATATTTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA-TGT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACTATAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-CATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAAA--TA---GATGG--CAG-CT--GGAAAGT---------CATACATGCATG-------TTTCG-A-TGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TTTAAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA------AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GGTGGTGTCAAT-A------ATG-TAATTAGCT---A-TCT-A--TTCAGA-AAAG-TTGCACGCTACTTGCATGGA-A-CCAACT
gi|20 : -GGGGG---GGGGGGGG-----GCTACAACT-CACTAGGATCTC-T-TTACA------ATA--TT-T--GAGGATTCATC-CGA-CCA--T-A--TT-AAATAATAGTCATACACTGTCAT-TTatacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctccggtggggcgaag
gi|21 : ggggGACTCGTGTAT-GAACTT--GCA-------TA--A-TTCT--AT--AAATG
gi|21 : gtcC-ATAA-----TTCTATAAATG-GCTAATTTTATT-CCATCA--CTAGG--A-ACAGACTGT-------CAAAA--gctaattttattccatcactaggaacagactgtcaaaacaaa
gi|3 : gtcgactcgtgtatgaacttgGATTCGTGTAT-GAA--T--GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG------------C-GGATAA-AATCTCTCCAA---------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-AGT-A-G---AAGACCAAGT-AA-TT-GAT---AAAGAA-AA------TCATTACTTTTATTTAT--AGTAT----TT-TC--CGA-----TTAATA-TGAATGTTTT-CCATA--G-GTCCAGTGG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA--GT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-CATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATT-CAAAA-GAGAAC-A-TTA----TACTAG--T--AA--T-ATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAA-AA-TATT-T-TT-AAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TCAAGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAGAAA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCGAA-T---TATAT---GTA-ACGCATTACTAT--AATATCAGGT-GGTGGTGTCAAT-A------ATG--AATTAGCT---A-TCT-A-TGTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTcaaa
gi|4 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAA------TG-AACGTG--GCG--TTCGTGGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-TA-ATTGAT---AAAGAA-AAAA-C-TTCAT-ACTTTT-TTTAT-TAG-ATA---TT-TC--CGA-----TTAATAATGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--G-C-ACG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---ATCATAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTA-CAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGTAACTTGCATGGACA-CCAACTTAatacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccggtggggcgaa
gi|5 : ATTCGTGTATTGAAA-TTAGTGACCTCGTTATTAGTGCTTTATACAAATGAGATGATAACTCGCCTCTCTATTAGATTTTTTGATCAG-GCGTCTATATTCTCGCTTTCAAACTACAGAT-ACAG-CGTTAATCGCACAAAACTACATTTACCAAG-ATT-GAGCCAGTG---------TTCC-GGAAAA-C-TCTCTCCAGT--------GTAAG-----TGGAACGTG--GCG--T-GG-ATTCT-GTAT--TTATTTATG-C-A---GAGACCAAGT-AAGTTTTAT---AAAAAA-AAAAACACTCAT-ACTTTTATTTACATGA-ATAACTTT-CC--CGAAATTATTAGTA-TC--TAATTT-CCATA--GCGAGCAG-GG--ATGGTAGCCGCAGCAGATTC-TTC--TTATA-TGT--AC-GAGGG---GAGGGAGG-----ACT-CAACT-TAC--------CTT-TTTGA------ATAAGTTGT--GA------ACCTCG--CCAC-T-GC-TT----TAATA-TCTTG---TGTCATCCTACCCCAGCAATCCGCTCTTTTTTC-TCCTATCCCTTGACACAGTCTCATTTTAGAGTATACGTACGTTACCGCAATGGT-AAGTTATCCAACTATACTAAAATGAAGACTA-TAACAGATAC--G--TCAAA--TTATCATAAGAGTA---GATGC--GAG-CTGAGGAATGTGTTAAACTACATACATGCTTGTAGTTGCTT-CG-ACTAAGTTTCTAGGAACGATATG---GTCAGCTGTTTAAG-A-TA-TAT-TT-AAAC--AGTACACAAAAT-ATATAGCATATG---GTGAAACAGTAAGT---TC-A-GTCGCC-AA-TACAGAAT--GCTAGACTCTCGACATTCGATTCGGTAA-GTTACC-G-AG-ATCAAAT-AATACCGTGTATTGACAGAACAGATAATAA-ATTCCGTCCCA-AGTAAACCTTG-ATC--AATGG-ATTTCCCTTCG--TTGTTCATAATTACTTCG-C-TTTCTATATC--GTATA-ACATTAACATACAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctccgggtgggcgaag
gi|6 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-C-ATCA--CTACGG-T-ACAGACTTT-------CAAAA---CATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCCC--AA--------GTAAC-----TG-AACGTG--GCGGCT-CG-GGTCTTGTAT--TTAAA-ATG-A-G---AAGACCAAGTTAA-TTTGAT---AAAGAA-AAAA-C-TTCAT-ACTTTATTTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--ACGGGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-T--GG------ATAAGTT-T---A------ACC-CG--CCACTT-GCTTT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-C-TCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA---GC-ACG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---AT-CTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAG-A-TATT-T-TT-AAACAAAG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-AT-----CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-ATT---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGGG-GGTGTCAAT-A------ATG-TAATTA-CT---ATTCT-ATTTTCAGA-AAAG-Tttcacgcgttg
gi|7 : tt-T--GCA-------TATCA-TGCT--ATA-AA-TGAAA----AATGC---TTTC-ATTA-----TTTCATCAG-G-GCTAATGTTTTA-CCATCG--CTACG--A-ACAGACTAT-------CAAAA--CTAA--ACCAAA-TTTTA---CAATGCACGTGTAAT--T-GGATAACA-T-TATCCAAA--------GTAGTATT--TG-TATGCGCAGCG-----G-GGTCT-GCAT--TTAAA-A------------ACCAAGT-AA-TTTGAT---TAA--A-AAAA-C-CT----ACTTTTATTTAT-TAG-ATA---TTGCC--CGA-----TTA-TA-TAAATTATTTTCCATA--G-ATCCAG-GG--ATGGAGGC-GCA-----------------GA-TGC--ACTGGGGGCCAGGGGGGGG--------------------------------GGG------TTAAGTT-T--GA------AAC-TA--CCATTTTGT-TT-------TT-CTTTG---TGTCAT-CTACTCT--CTATTC-CT-CATTTTT-T-CTGTCCC------------CATT---GAG-ATATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAA--A-TT----ATAT--G--T--AAACTTATCAAAA---TA---GATGC--GAG-AT--GAGGAAT---------CATGCATGTATG-------TT-CG-ACTGAGTTTT-AGGG-----ACG---GTC-A-TGTTTATGAA-TA-T-T-GT-GAAC--AG------AAA----ATACC-T-TG---GTG-ATCA-TCAGTA--GT-GGGTATCCTGA-T----AAT--ACCAG------GACGT-------GGT-A-G-CA-CAG-AGTAT-AAAG-AG-A-AGTGTGGAGACAT-----------A-ATTC---ACCA-A--------GT-ATC-AGCAGG-TAATC----AA--T--TCCATACTC--TCCG-A-TTTATGTAT---GTAGG-GCATTACTATA-AATAT-AAGT-AG-GG-GTCAAT-AATATACATG-TAATTAACT---ATTCT-ATTTTCAGA-AA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGAATTAAACATACATTGGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACCAAAACACGTAAAATCAAGATGGGAAGGGGAAGTCGTCTCTTTTTGATAACATTTATTTTCCATGATTTGTAAGCGCGATTGGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTTGTATGACGCTTCTTGAATATAATACCCGGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGCGAAAAATAAACTCACGTTTTCGGAAAGGC
Unaligned ( gi|9 ): GAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACTTTTTATAAGGCTGGGTGGTGTTTTAAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAAAAGC
Unaligned ( gi|10 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGGAATGTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCATATTATGTAGATTATATTGGTTACACAAAACACGTTAAAATCAAGATGGGAAGGGGGAAGTCGTTCTTTTGATAACATTTATTTTCCATATTTTGTAAGCGCGATGCCGTACATACGGCAATTATCTCTGCGTGCTTCTGCACTGCTGTAATGACGCTTCTTGAATTAATACCCGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTCGGAA
Unaligned ( gi|11 ): AGGAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACGATATTGATCAAGCAACTTTTTATAAGGCTGGTGTGGTGTTTTAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAAATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAA
Unaligned ( gi|12 ): AGGAGTAGGTCGATTTCCAGACCCCAGAAGTGTCTGTCTGACATACTGGACTAGACGTCATATATTTGATAGTGAACAAGCGACCCCGACATTTTATAAATCTGACTGTGCTAAAACATGGAATTCTAAAAGGCCTAGAGTAAATTAAGCTCCTAAGGAAATTCATGCAATATATAATATGGGCTATTTTCTGTTACAAAACACGTAATGGGAAGGGAGAGGTCTCAGCTTTTGATAATCATGCTGATTTTCCGTTATTTTTACATGTAGCGC
Unaligned ( gi|13 ): AGGTATTTCCAGAATTCATAAGCGTCTGTCTGACAAACAGAATTTGACGTACATGTATATTGTGTCAGAACTGGATATTGATCAAGCAACATTTTATAAGGCTGATTGTGGTAGAACACAGGGGTTTTAAAAGATCCCGAGGAAATTTATGCAATATATATAATATACATGTAGATTAA
Unaligned ( gi|15 ): ATATTCTCGGCGGCTGTTCTGCACGTGTGTGTCGTAATGTACAGCTTACCCCTCCTGAATACTAATAACCCGGAATGTTTAGGAAAAGTTAGATATCTCACGGCAACGCGCCACTACGTTCGTGCGATCAAGGAATAGATAACTCACGTTTTCCGGAAAGGTT
Unaligned ( gi|16 ): ATGTATATTGTGCCAGATCTTGCTTACTGATCAAGCGACATTTTTGCTAGGACACAGGGAAATCTACGCAATATATAGTATATATTAGTTTTGGTCACAAAACACGTAAACTCAAGATTAGAAGTGTGTCCTCTTTTTTATAACAT
Unaligned ( gi|18 ): AAGGTAGGTATTTCCAGAATCCATAACCCTGACATACAGAATTAAACTTACATCTATATTGTGTCAGAACATGCTTACTACAATGATATATTGATTAA
Unaligned ( gi|19 ): TACACAAACCTTGACAACACTGGTTACATCCACATATCTTGATCATAGCAACATTTTTATAAGGCTGGTTGTTGGTGTTTTAAAAGGCCCAGAGTG
Unaligned ( gi|22 ): CTCATTTAGGGTATACGTACGTTGATCACAATGTTAACTTCGCCAATTAATACTTTTAAAATG
Alignments
lowQualScore : 11 1111111 1 1111 111 11111 1111 1111111 111 111 22222222222222 111 222222222 222222 1111 111111111 111 11 111 11111 1 1 22222 1 11111111 111111 2222222222 11 1 11 1111 333333333333 111 11 11111 111 111 111 11 222222222 3333333 11111 111 11 1 111111 11 111 111111 222222 2222222 1 1 22222222222 111 22222222 1111 222 111 111 11 1 111111 111
lowQualScore : 6 88 33 8888888 5 77 5 2 4444 111 5 44444 1 5 5 5 77 7777 8888888 111 5 5 000 99999999999999 555 222222222 777777 5 77 3333 5 5 77 5 555555555 5 5 5 000 1 5 5 88 0 5 1 5 5 000 6 99 66666 1 6 1 5 77 5 5 77 5 5 1 77 5 77 0 888 55555 5 0 88888888 5 5 0 444444 5 8888888888 5 11 0 0 5 99 5 888 5 77 8888 5 5 777777777777 000 5 5 5 77 5 22 44444 0 5 5 5 000 1 5 77 77 77 555 000 77 5 33 222222222 5555555 5 5 5 44444 000 33 5 5 5 1 5 5 5 77 666666 11 5 5 000 5 5 77 5 555555 77 666666 8888888 5 5 1 5 1 5 5 5 77777777777 5 000 5 00000000 5 5 5 2222 77 77 77 555 000 0 555 666 11 6 3 6 999999 6 1 111 7 6 7 6 8 333 8
lowQualScore : . .. .. ....... . .. . . .... ... . ..... . . . . .. .... ....... ... . . ... .............. ... ......... ...... . .. .... . . .. . ......... . . . ... . . . .. . . . . . ... . .. ..... . . . . .. . . .. . . . .. . .. . ... ..... . . ........ . . . ...... . .......... . .. . . . .. . ... . .. .... . . ............ ... . . . .. . .. ..... . . . . ... . . .. .. .. ... ... .. . .. ......... ....... . . . ..... ... .. . . . . . . . .. ...... .. . . ... . . .. . ...... .. ...... ....... . . . . . . . . ........... . ... . ........ . . . .... .. .. .. ... ... . ... ... .. . . . ...... . . ... . . . . . ... .
lowQualScore : 7 99 66 6666666 7 99 7 0 2222 777 7 33333 0 7 7 7 99 7777 6666666 000 7 7 000 00000000000000 000 444444444 333333 7 99 7777 7 7 99 7 999999999 7 7 0 000 7 7 7 11 7 7 7 7 7 000 7 22 77777 7 7 0 7 99 7 7 99 7 7 4 99 7 99 0 888 00000 0 0 11111111 0 0 1 444444 0 0000000000 0 99 1 0 0 44 0 888 0 99 4444 7 7 111111111111 000 7 7 7 99 7 99 33333 1 7 7 7 000 4 0 99 99 99 777 000 99 7 66 999999999 0000000 7 7 7 33333 000 66 7 0 7 4 7 7 7 99 444444 11 7 7 000 7 7 99 7 999999 99 444444 6666666 7 7 4 7 4 7 7 7 11111111111 7 000 7 77777777 7 7 7 1111 99 99 99 999 000 1 777 000 66 7 3 7 222222 7 0 777 3 7 3 7 0 666 0
consensus : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTTA
Reference ( family-2076 ) : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTTA
gi|1 : TTC-CCATAAAG-GTCCAA-GGGAATGGAAGC-TCA-CGTGTTA-CCTATTAAAACTGCTCAC-GGGGG---AGTTAGT------ACT-CAAATCTAC--------C-TCTTGGACATTTAACCAGTT-TTCAAC-----ACC-CAGCCCACTCCGC-TT----TAATA-TCTTG---TGTCAT--TACCCC--CAATTC---TCATTATCTT-CAAACCCAT----------CATT---GGA-GTATGTA-CTT--CGCA--AGCAACG-CATA-----ATTTCAAAA-GAGAAC-ACTTA---ATACTAGTAT--AA--TTATCAAAA---CATAGGATGCCTGAGACTC-GGGAAGT---------CAAACATGCATGGATTTT-TT-CGCACTGAGTTTC-AGGG-----CTGGCTGT--G-TATTTAAGAACTA-T-CATT-AAAC--AG------AAATAATATAGC-C-TATGTGTG-AACA-TAAGTAATCC-AGGTAGCCTAATT----AATCGGCTAGGTC---GACGTAAC----GGT-ATGTTG--AGAAGTATAAAAG-AA-A-CGTTAGGAGACAG-----------ACATTC---CCCACA--------TGAATCAAAATGGAATTTC----AGCTT--TCCAT-CTT--TCCG-A-T---T-TATAGGGTA-AGGCATTACTATGCAAT-TCAGAG-GG-GGTGTCAATGA------ATGCTAATTAGCCGTAATTCGAATTTTCAGAGAAAGATTGCACCGT-CTTGCATGGACACCCAACT
gi|14 : tACGTAACTTGCATGGACA-CCAACTTAatagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggttggggtgcaagaaggaaagtatttccaaatcattaacgtccgtctgacactacagcagattaaacatacttgtcagtcagaactgctatcgacactcgatattgatcaagccaaacattaattgaaaaggtcccgtggaaactgatgcaaatagatgctgcacctatatctggtacccgtaatgtattatatattatgaattagtagttaacattttagaattacaacaacacttaaaaaatatcaagatagggaagcggatcgtcttcttttgtgatacatttaattccatatttgataagtgcgattgctcgttcacaacaggcaatatctctgaggctttctgcactgttggttatgaccgctttgaatataattagcccggaagtttaaaattaaatctacgcaagcgcactcagcgtcttacccggtgatcaagtaaagcataactcatgtttttcggaaataggc
gi|17 : A-ATT-A---CAATG---------T--TTGGATAA-C-TCTCTCCAAAATGGACGTGTGGCATATTTG-TATGTG--CAG--C-CA-GGTCA-GTAT--TTTAA-ACG-ATGCACAAGACCAGGT-AA-TTTGATTTAAAAAAACAAAA-C-----T-ACTTTTATTTAT-TAA-ATA---Ttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccggggggcgaag
gi|2 : GATTCGTGTAT-GAAA-TT-GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACG--TTACAGACTTT-------CAAAA--ACATTTACCAAATATT-A---CAATG---------T--C-GGATAA-AATCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTATATTTAAA-ATGTA-G---AAGACCAAGT-AA-TT-GAT---AAAGAA-AAAA-C--TCAT-ACTTTTATTTAT-TAG-ATA---TT-TCTCCGA-----TTAATA-TGAATATTTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA-TGT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACTATAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-CATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAAA--TA---GATGG--CAG-CT--GGAAAGT---------CATACATGCATG-------TTTCG-A-TGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TTTAAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA------AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GGTGGTGTCAAT-A------ATG-TAATTAGCT---A-TCT-A--TTCAGA-AAAG-TTGCACGCTACTTGCATGGA-A-CCAACT
gi|20 : -GGGGG---GGGGGGGG-----GCTACAACT-CACTAGGATCTC-T-TTACA------ATA--TT-T--GAGGATTCATC-CGA-CCA--T-A--TT-AAATAATAGTCATACACTGTCAT-TTatacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctccggtggggcgaag
gi|21 : ggggGACTCGTGTAT-GAACTT--GCA-------TA--A-TTCT--AT--AAATG
gi|21 : gtcC-ATAA-----TTCTATAAATG-GCTAATTTTATT-CCATCA--CTAGG--A-ACAGACTGT-------CAAAA--gctaattttattccatcactaggaacagactgtcaaaacaaa
gi|3 : gtcgactcgtgtatgaacttgGATTCGTGTAT-GAA--T--GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG------------C-GGATAA-AATCTCTCCAA---------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-AGT-A-G---AAGACCAAGT-AA-TT-GAT---AAAGAA-AA------TCATTACTTTTATTTAT--AGTAT----TT-TC--CGA-----TTAATA-TGAATGTTTT-CCATA--G-GTCCAGTGG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA--GT--AC-GGGGG---GGGGGGGGGGGGGACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-CATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATT-CAAAA-GAGAAC-A-TTA----TACTAG--T--AA--T-ATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAA-AA-TATT-T-TT-AAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TCAAGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAGAAA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCGAA-T---TATAT---GTA-ACGCATTACTAT--AATATCAGGT-GGTGGTGTCAAT-A------ATG--AATTAGCT---A-TCT-A-TGTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTcaaa
gi|4 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAA------TG-AACGTG--GCG--TTCGTGGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-TA-ATTGAT---AAAGAA-AAAA-C-TTCAT-ACTTTT-TTTAT-TAG-ATA---TT-TC--CGA-----TTAATAATGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--G-C-ACG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---ATCATAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTA-CAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGTAACTTGCATGGACA-CCAACTTAatacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccggtggggcgaa
gi|5 : ATTCGTGTATTGAAA-TTAGTGACCTCGTTATTAGTGCTTTATACAAATGAGATGATAACTCGCCTCTCTATTAGATTTTTTGATCAG-GCGTCTATATTCTCGCTTTCAAACTACAGAT-ACAG-CGTTAATCGCACAAAACTACATTTACCAAG-ATT-GAGCCAGTG---------TTCC-GGAAAA-C-TCTCTCCAGT--------GTAAG-----TGGAACGTG--GCG--T-GG-ATTCT-GTAT--TTATTTATG-C-A---GAGACCAAGT-AAGTTTTAT---AAAAAA-AAAAACACTCAT-ACTTTTATTTACATGA-ATAACTTT-CC--CGAAATTATTAGTA-TC--TAATTT-CCATA--GCGAGCAG-GG--ATGGTAGCCGCAGCAGATTC-TTC--TTATA-TGT--AC-GAGGG---GAGGGAGG-----ACT-CAACT-TAC--------CTT-TTTGA------ATAAGTTGT--GA------ACCTCG--CCAC-T-GC-TT----TAATA-TCTTG---TGTCATCCTACCCCAGCAATCCGCTCTTTTTTC-TCCTATCCCTTGACACAGTCTCATTTTAGAGTATACGTACGTTACCGCAATGGT-AAGTTATCCAACTATACTAAAATGAAGACTA-TAACAGATAC--G--TCAAA--TTATCATAAGAGTA---GATGC--GAG-CTGAGGAATGTGTTAAACTACATACATGCTTGTAGTTGCTT-CG-ACTAAGTTTCTAGGAACGATATG---GTCAGCTGTTTAAG-A-TA-TAT-TT-AAAC--AGTACACAAAAT-ATATAGCATATG---GTGAAACAGTAAGT---TC-A-GTCGCC-AA-TACAGAAT--GCTAGACTCTCGACATTCGATTCGGTAA-GTTACC-G-AG-ATCAAAT-AATACCGTGTATTGACAGAACAGATAATAA-ATTCCGTCCCA-AGTAAACCTTG-ATC--AATGG-ATTTCCCTTCG--TTGTTCATAATTACTTCG-C-TTTCTATATC--GTATA-ACATTAACATACAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctccgggtgggcgaag
gi|6 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-C-ATCA--CTACGG-T-ACAGACTTT-------CAAAA---CATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCCC--AA--------GTAAC-----TG-AACGTG--GCGGCT-CG-GGTCTTGTAT--TTAAA-ATG-A-G---AAGACCAAGTTAA-TTTGAT---AAAGAA-AAAA-C-TTCAT-ACTTTATTTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--ACGGGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-T--GG------ATAAGTT-T---A------ACC-CG--CCACTT-GCTTT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-C-TCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA---GC-ACG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---AT-CTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAG-A-TATT-T-TT-AAACAAAG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-AT-----CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-ATT---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGGG-GGTGTCAAT-A------ATG-TAATTA-CT---ATTCT-ATTTTCAGA-AAAG-Tttcacgcgttg
gi|7 : tt-T--GCA-------TATCA-TGCT--ATA-AA-TGAAA----AATGC---TTTC-ATTA-----TTTCATCAG-G-GCTAATGTTTTA-CCATCG--CTACG--A-ACAGACTAT-------CAAAA--CTAA--ACCAAA-TTTTA---CAATGCACGTGTAAT--T-GGATAACA-T-TATCCAAA--------GTAGTATT--TG-TATGCGCAGCG-----G-GGTCT-GCAT--TTAAA-A------------ACCAAGT-AA-TTTGAT---TAA--A-AAAA-C-CT----ACTTTTATTTAT-TAG-ATA---TTGCC--CGA-----TTA-TA-TAAATTATTTTCCATA--G-ATCCAG-GG--ATGGAGGC-GCA-----------------GA-TGC--ACTGGGGGCCAGGGGGGGG--------------------------------GGG------TTAAGTT-T--GA------AAC-TA--CCATTTTGT-TT-------TT-CTTTG---TGTCAT-CTACTCT--CTATTC-CT-CATTTTT-T-CTGTCCC------------CATT---GAG-ATATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAA--A-TT----ATAT--G--T--AAACTTATCAAAA---TA---GATGC--GAG-AT--GAGGAAT---------CATGCATGTATG-------TT-CG-ACTGAGTTTT-AGGG-----ACG---GTC-A-TGTTTATGAA-TA-T-T-GT-GAAC--AG------AAA----ATACC-T-TG---GTG-ATCA-TCAGTA--GT-GGGTATCCTGA-T----AAT--ACCAG------GACGT-------GGT-A-G-CA-CAG-AGTAT-AAAG-AG-A-AGTGTGGAGACAT-----------A-ATTC---ACCA-A--------GT-ATC-AGCAGG-TAATC----AA--T--TCCATACTC--TCCG-A-TTTATGTAT---GTAGG-GCATTACTATA-AATAT-AAGT-AG-GG-GTCAAT-AATATACATG-TAATTAACT---ATTCT-ATTTTCAGA-AA
blockSeqs : T CT TA ACCTCGT G TT C A TGAT GCC T GATTT T T C G AA GAT AATCGCA CTA T T AGC CACGTGTAATT AA A TATT G CA GCT T T AT T TGTAG T G T . G . A AC T A A T ACT G . AATTA A A G T . C T . C G A . . . G CCA GGGGG A A TAGGATCT T . . G GAGGATTC T A T T TA G CAC C AG GCTC . C TTGACACAGTCT TTA T C C AT . TT CAACT T T . CAG A T . CA AC GAG . . . GA GTTAAACTA TAGTTGC T . T ACGAT . CA C A . T A . T AA TACACA A A A . A G . A TACAG . ACTCTC TCGATTC A . C . C A T C AACAGATAATA . CGT . GTAAACCT . . . CCTT . TG AC AA TTC C AC AC G T . ATATAC . G . T . T . . TAA .
blockSeqs : . A . . . . . A . . . . A . . . . GT . A . . . TTCC AA A C . . TT . . . . GTAG . . T . G . . T . A . . . . . . A . T . . . . . . . A . . . T . GGGGG . . . . . . . GA . . . . TA . . . . CTT . . . . . . . . . T . . . . . A T . . . A . . . . . . . . . . . C . A . T . . . . . A . . . . . . . T . . . . . C . . . . . . . . . . . . . . . . . AT TTA . TA A . T . . . G . T . T . . CTA .
blockSeqs : . A . . . . . A . . . . T . . . . A . A . . . TC CA T C . . T . . . . TGAG . . T . G . . T . A . . . . . . G . A . . . . . . . . . . . . . . . . . . . . . GA . . . . A . . . . CT . . . . . . . . . T . . . . . C T . . . . . . . . . . . . . . . . . A . . . . . . . T . . . . . . . T . . . . . C . . . . . . . . . . . . . . . . . A . . GG A . . . . . G . T . T . . CTA .
blockSeqs : . A . . . . . A . . . . G . . . . T . C . . . TC A A G . . T . . . . TGCA . . T . A . . C . T . . . . . . A . T . . . . . . . . . . . . . . . . . . . . . GA . . . . A . . . . CT . . . . . . . . . T . . . . . A T . . . . . . . . . . . . . . . . . A . . . . . . . T . . . . . . . T . . . . . C . . . . . . . . . . . . . . . . . A . . A A . . . . . A . . . . . . TAA .
blockSeqs : . . . . . . . . . . . . T . . . . T . . . . . TC C A C . . T . . . . TGAG . . . . G . . . . A . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . A . . . . CT . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . C . . A A . . . . . . . . . . .
blockSeqs : . . . . . . . . C . . . . A . . . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . CT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . A .
blockSeqs : . . . . . . . . . . A . . . . . . . .
blockSeqCons : ** N*** TC************ A******** C***** TGAG***** *** C* ** ** ** ** ** ****** GA******** ** A* CT** ************ ** *** ** ** ******* *** T* *** ** T***** ** ****** ******* ** *** A** A* *** CNA
originalCons : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACG--T-ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTCATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTTA
finalCons : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACGN---ACAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATGTC------------GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATGAG-----AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-CC-TCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGGG---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-TGA--------ACC-CG--CCACTT-GC-TTA-AATAATA-TCTTG---TGTCAT-CTACCCC--CAATTCCT--CATTTTC-T-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGC-ACG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TT-CG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TT-AAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAAT-----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTAA--GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCNACTTGCATGGACA-CCAACTTA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGAATTAAACATACATTGGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACCAAAACACGTAAAATCAAGATGGGAAGGGGAAGTCGTCTCTTTTTGATAACATTTATTTTCCATGATTTGTAAGCGCGATTGGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTTGTATGACGCTTCTTGAATATAATACCCGGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGCGAAAAATAAACTCACGTTTTCGGAAAGGC
Unaligned ( gi|9 ): GAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACTTTTTATAAGGCTGGGTGGTGTTTTAAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAAAAGC
Unaligned ( gi|10 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGGAATGTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCATATTATGTAGATTATATTGGTTACACAAAACACGTTAAAATCAAGATGGGAAGGGGGAAGTCGTTCTTTTGATAACATTTATTTTCCATATTTTGTAAGCGCGATGCCGTACATACGGCAATTATCTCTGCGTGCTTCTGCACTGCTGTAATGACGCTTCTTGAATTAATACCCGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTCGGAA
Unaligned ( gi|11 ): AGGAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACGATATTGATCAAGCAACTTTTTATAAGGCTGGTGTGGTGTTTTAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAAATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAA
Unaligned ( gi|12 ): AGGAGTAGGTCGATTTCCAGACCCCAGAAGTGTCTGTCTGACATACTGGACTAGACGTCATATATTTGATAGTGAACAAGCGACCCCGACATTTTATAAATCTGACTGTGCTAAAACATGGAATTCTAAAAGGCCTAGAGTAAATTAAGCTCCTAAGGAAATTCATGCAATATATAATATGGGCTATTTTCTGTTACAAAACACGTAATGGGAAGGGAGAGGTCTCAGCTTTTGATAATCATGCTGATTTTCCGTTATTTTTACATGTAGCGC
Unaligned ( gi|13 ): AGGTATTTCCAGAATTCATAAGCGTCTGTCTGACAAACAGAATTTGACGTACATGTATATTGTGTCAGAACTGGATATTGATCAAGCAACATTTTATAAGGCTGATTGTGGTAGAACACAGGGGTTTTAAAAGATCCCGAGGAAATTTATGCAATATATATAATATACATGTAGATTAA
Unaligned ( gi|15 ): ATATTCTCGGCGGCTGTTCTGCACGTGTGTGTCGTAATGTACAGCTTACCCCTCCTGAATACTAATAACCCGGAATGTTTAGGAAAAGTTAGATATCTCACGGCAACGCGCCACTACGTTCGTGCGATCAAGGAATAGATAACTCACGTTTTCCGGAAAGGTT
Unaligned ( gi|16 ): ATGTATATTGTGCCAGATCTTGCTTACTGATCAAGCGACATTTTTGCTAGGACACAGGGAAATCTACGCAATATATAGTATATATTAGTTTTGGTCACAAAACACGTAAACTCAAGATTAGAAGTGTGTCCTCTTTTTTATAACAT
Unaligned ( gi|18 ): AAGGTAGGTATTTCCAGAATCCATAACCCTGACATACAGAATTAAACTTACATCTATATTGTGTCAGAACATGCTTACTACAATGATATATTGATTAA
Unaligned ( gi|19 ): TACACAAACCTTGACAACACTGGTTACATCCACATATCTTGATCATAGCAACATTTTTATAAGGCTGGTTGTTGGTGTTTTAAAAGGCCCAGAGTG
Unaligned ( gi|22 ): CTCATTTAGGGTATACGTACGTTGATCACAATGTTAACTTCGCCAATTAATACTTTTAAAATG
Alignments
lowQualScore : 11 1111111 1 1111 111 11111 11 1111111 111 111 22222222222222 111 222222222 222222 1111 111111111 111 11 111 11111 1 1 1111111111 11111 1 11111111 111111 2222222222 11 1111 11 1 333333333333 111 11 11111 111 111 111 11 222222222 4444444 11111 111 11 1 111111 11 111 111111 222222 2222222 1 1 22222222222 111 22222222 1111 222 111 111 11 1 111111 111
lowQualScore : 6 88 33 8888888 5 77 5 2 4444 111 5 44444 1 5 5 5 77 22 77 8888888 111 5 5 000 99999999999999 555 222222222 777777 5 77 3333 5 5 77 5 555555555 5 5 5 000 1 5 5 88 0 5 1 5 5 000 6 99 66666 1 6 1 5 77 5 5 77 5 5 1 77 5 77 0 6666666666 22222 5 0 88888888 5 5 0 444444 5 8888888888 5 11 0 0000 44 5 888 5 77 5 5 5 1 777777777777 000 5 5 5 77 5 22 44444 0 5 5 5 000 1 5 77 77 77 5 000 000 77 5 33 222222222 0000000 5 5 44444 000 33 5 5 5 7 5 5 77 666666 11 5 5 000 5 5 77 5 555555 77 666666 8888888 5 5 1 5 1 5 5 5 77777777777 5 000 5 00000000 5 5 5 2222 77 77 77 555 000 0 555 666 11 6 3 6 999999 6 1 111 7 6 7 6 8 1 8
lowQualScore : . .. .. ....... . .. . . .... ... . ..... . . . . .. .. .. ....... ... . . ... .............. ... ......... ...... . .. .... . . .. . ......... . . . ... . . . .. . . . . . ... . .. ..... . . . . .. . . .. . . . .. . .. . .......... ..... . . ........ . . . ...... . .......... . .. . .... .. . ... . .. . . . . ............ ... . . . .. . .. ..... . . . . ... . . .. .. .. . ... ... .. . .. ......... ....... . . ..... ... .. . . . . . . .. ...... .. . . ... . . .. . ...... .. ...... ....... . . . . . . . . ........... . ... . ........ . . . .... .. .. .. ... ... . ... ... .. . . . ...... . . ... . . . . . . .
lowQualScore : 7 99 66 6666666 7 99 7 0 2222 777 7 33333 0 7 7 7 99 44 99 6666666 000 7 7 000 00000000000000 000 444444444 333333 7 99 7777 7 7 99 7 999999999 7 7 0 000 7 7 7 11 7 7 7 7 7 000 7 22 77777 7 7 0 7 99 7 7 99 7 7 4 99 7 99 0 2222222222 55555 0 0 11111111 0 0 1 444444 0 0000000000 0 99 1 2222 44 0 888 0 99 7 7 7 4 111111111111 000 7 7 7 99 7 99 33333 1 7 7 7 000 4 0 99 99 99 7 000 000 99 7 66 999999999 7777777 7 7 33333 000 66 7 0 7 1 7 7 99 444444 11 7 7 000 7 7 99 7 999999 99 444444 6666666 7 7 4 7 4 7 7 7 11111111111 7 000 7 77777777 7 7 7 1111 99 99 99 999 000 1 777 000 66 7 3 7 222222 7 0 777 3 7 3 7 0 0 0
consensus : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACGN-A--CAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGG------G---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-C-ATTTTCT-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGCA-CG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATC-AAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TTCG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TATT-T-TTAAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCNACTTGCATGGACA-CCAACTTA
Reference ( family-2076 ) : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTNATCAG-G-GCTAATGTCATC-CCATCA--CTACGN-A--CAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-AA-TTTGAT---AAAGAA-AAAA-C-CTCAT-ACTTTTATTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATNATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGG------G---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-C-ATTTTCT-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGCA-CG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATC-AAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TTCG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TTAAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGCNACTTGCATGGACA-CCAACTTA
gi|1 : TTC-CCATAAAG-GTCCAA-GGGAATGGAAGC-TCA-CGTGTTA-CCTATTAAAACTGCTCAC-GGGG------G---AGTTAGT------ACT-CAAATCTAC--------C-TCTTGGACATTTAACCAGTT-TTCAAC-----ACC-CAGCCCACTCCGC-TT----TAATA-TCTTG---TGTCAT--TACCCC--CAATTC--T-C-ATTATCTTCAAACCCAT----------CATT---GGA-GTATGTA-CTT--CGCA--AGCAACG-CATA-----ATTTCAAAA-GAGAAC-ACTTA---ATACTAGTAT--AA--TTATC-AAAA---CATAGGATGCCTGAGACTC-GGGAAGT---------CAAACATGCATGGATTTT-TTCGCACTGAGTTTC-AGGG-----CTGGCTGT--G-TATTTAAGAACTA-T-CATTAAAC--AG------AAATAATATAGC-C-TATGTGTG-AACA-TAAGTAATCC-AGGTAGCCTAATT----AATCGGCTAGGTC---GACGTAAC----GGT-ATGTTG--AGAAGTATAAAAG-AA-A-CGTTAGGAGACAG-----------ACATTC---CCCACA--------TGAATCAAAATGGAATTTC----AGCTT--TCCAT-CTT--TCCG-A-T---T-TATAGGGTA-AGGCATTACTATGCAAT-TCAGAG-GG-GGTGTCAATGA------ATGCTAATTAGCCGTAATTCGAATTTTCAGAGAAAGATTGCAC-CGTCTTGCATGGACACCCAACT
gi|14 : tACGTAACTTGCATGGACA-CCAACTTAatagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggttggggtgcaagaaggaaagtatttccaaatcattaacgtccgtctgacactacagcagattaaacatacttgtcagtcagaactgctatcgacactcgatattgatcaagccaaacattaattgaaaaggtcccgtggaaactgatgcaaatagatgctgcacctatatctggtacccgtaatgtattatatattatgaattagtagttaacattttagaattacaacaacacttaaaaaatatcaagatagggaagcggatcgtcttcttttgtgatacatttaattccatatttgataagtgcgattgctcgttcacaacaggcaatatctctgaggctttctgcactgttggttatgaccgctttgaatataattagcccggaagtttaaaattaaatctacgcaagcgcactcagcgtcttacccggtgatcaagtaaagcataactcatgtttttcggaaataggc
gi|17 : A-ATT-A---CAATG---------T--TTGGATAA-C-TCTCTCCAAAATGGACGTGTGGCATATTTG-TATGTG--CAG--C-CA-GGTCA-GTAT--TTTAA-ACG-ATGCACAAGACCAGGT-AA-TTTGATTTAAAAAAACAAAA-C-----T-ACTTTTATTTAT-TAA-ATA---Ttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccggggggcgaag
gi|2 : GATTCGTGTAT-GAAA-TT-GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACGTTA--CAGACTTT-------CAAAA--ACATTTACCAAATATT-A---CAATG---------T--C-GGATAA-AATCTCTCCAAA--------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTATATTTAAA-ATGTA-G---AAGACCAAGT-AA-TT-GAT---AAAGAA-AAAA-C--TCAT-ACTTTTATTTAT-TAG-ATA---TT-TCTCCGA-----TTAATA-TGAATATTTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA-TGT--AC-GGGGGGGGGG----GGGGGGGG-----ACT-CAACTATAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GCTTT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-C-ATTTTCT-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGCA-CG-TATC-----ATTTCAAAA-GAGAAC-A-TTA---ATACTAG--T--AA--TTATCAAAAA---TA---GATGG--CAG-CT--GGAAAGT---------CATACATGCATGT------TTCG-A-TGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TATT-T-TTAAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA------AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GGTGGTGTCAAT-A------ATG-TAATTAGCT---A-TCT-A--TTCAGA-AAAG-TTGCACGCTACTTGCATGGA-A-CCAACT
gi|20 : -GGGG------G---GGGGGGGG-----GCTACAACT-CACTAGGATCTC-T-TTACA------ATA--TT-T--GAGGATTCATC-CGA-CCA--T-A--TT-AAATAATAGTCATACACTGTCAT-TTatacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctccggtggggcgaag
gi|21 : ggggGACTCGTGTAT-GAACTT--GCA-------TA--A-TTCT--AT--AAATG
gi|21 : gtcC-ATAA-----TTCTATAAATG-GCTAATTTTATT-CCATCA--CTAGGA-A--CAGACTGT-------CAAAA--gctaattttattccatcactaggaacagactgtcaaaacaaa
gi|3 : gtcgactcgtgtatgaacttgGATTCGTGTAT-GAA--T--GCA-------TATTA-TGCT--ATA-AA-TGAGA----AATTC---TCTC-ATTA-----TTTAATCAG-G-GCTAATGTCATC-CCATCA--CTACGT-A--CAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG------------C-GGATAA-AATCTCTCCAA---------GTAAC-----TG-AACGTG--GCG--T-CG-GGTCT-GTAT--TTAAA-AGT-A-G---AAGACCAAGT-AA-TT-GAT---AAAGAA-AA------TCATTACTTTTATTTAT--AGTAT----TT-TC--CGA-----TTAATA-TGAATGTTTT-CCATA--G-GTCCAGTGG--ATGGAAGC-GCA-CGTGTTAACTT--TAAAA--GT--AC-GGGG------G---GGGGGGGGGGGGGACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T--GA------ACC-CG--CCACTT-GC-TTTAAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-C-ATTTTCT-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--GGCA-CG-TATC-----ATT-CAAAA-GAGAAC-A-TTA----TACTAG--T--AA--T-ATC-AAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TTCG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAA-AA-TATT-T-TTAAAC--AG------AAAA-ATATAGC-T-TG---GTG-AACA-TAAGTA--TCAAGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAGAAA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCGAA-T---TATAT---GTA-ACGCATTACTAT--AATATCAGGT-GGTGGTGTCAAT-A------ATG--AATTAGCT---A-TCT-A-TGTCAGA-AAAG-TTGCACGCTACTTGCATGGACA-CCAACTcaaa
gi|4 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-CCATCA--CTACGT-A--CAGACTTT-------CAAAA--ACATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCTCCAAA--------GTAA------TG-AACGTG--GCG--TTCGTGGTCT-GTAT--TTAAA-ATG-A-G---AAGACCAAGT-TA-ATTGAT---AAAGAA-AAAA-C-TTCAT-ACTTTT-TTTAT-TAG-ATA---TT-TC--CGA-----TTAATAATGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--AC-GGGG------G---GGGGGGGG-----ACT-CAACT-TAC--------C-T-TTGGA------ATAAGTT-T---A------ACC-CG--CCACTT-GC-TT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CTTC-ATTTTCT-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA--G-CA-CG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---ATCATAG--T--AA--TTATC-AAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TTCG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAGAA-TA-T-T-TTAAAC--AG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTA-CAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-ATTC---CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-A-T---TATAT---GTA-A-GCATTACTATA-AATATCAGGT-GG-GGTGTCAAT-A------ATG-TAATTAGCT---ATTCT-ATTTTCAGA-AAAG-TTGCACGTAACTTGCATGGACA-CCAACTTAatacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccggtggggcgaa
gi|5 : ATTCGTGTATTGAAA-TTAGTGACCTCGTTATTAGTGCTTTATACAAATGAGATGATAACTCGCCTCTCTATTAGATTTTTTGATCAG-GCGTCTATATTCTCGCTTTCAAACTACAG-ATACAG-CGTTAATCGCACAAAACTACATTTACCAAG-ATT-GAGCCAGTG---------TTCC-GGAAAA-C-TCTCTCCAGT--------GTAAG-----TGGAACGTG--GCG--T-GG-ATTCT-GTAT--TTATTTATG-C-A---GAGACCAAGT-AAGTTTTAT---AAAAAA-AAAAACACTCAT-ACTTTTATTTACATGA-ATAACTTT-CC--CGAAATTATTAGTA-TC--TAATTT-CCATA--GCGAGCAG-GG--ATGGTAGCCGCAGCAGATTC-TTC--TTATA-TGT--AC-GAGG------G---GAGGGAGG-----ACT-CAACT-TAC--------CTT-TTTGA------ATAAGTTGT--GA------ACCTCG--CCAC-T-GC-TT----TAATA-TCTTG---TGTCATCCTACCCCAGCAATCCGCT-CTTTTTTCTCCTATCCCTTGACACAGTCTCATTTTAGAGTATACGTACGTTACCGCAATGGTA-AGTTATCCAACTATACTAAAATGAAGACTA-TAACAGATAC--G--TCAAA--TTATC-ATAAGAGTA---GATGC--GAG-CTGAGGAATGTGTTAAACTACATACATGCTTGTAGTTGCTTCG-ACTAAGTTTCTAGGAACGATATG---GTCAGCTGTTTAAG-A-TA-TAT-TTAAAC--AGTACACAAAAT-ATATAGCATATG---GTGAAACAGTAAGT---TC-A-GTCGCC-AA-TACAGAAT--GCTAGACTCTCGACATTCGATTCGGTAA-GTTACC-G-AG-ATCAAAT-AATACCGTGTATTGACAGAACAGATAATAA-ATTCCGTCCCA-AGTAAACCTTG-ATC--AATGG-ATTTCCCTTCG--TTGTTCATAATTACTTCG-C-TTTCTATATC--GTATA-ACATTAACATACAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccctccgggtgggcgaag
gi|6 : GATTCGTGTAT-GAAA-T--GCA-------TATTA-TGCT--ATA-AAATGAGA----AATTC---TCTC-ATTA-----TTTTATCAG-G-GCTAATGTCATC-C-ATCA--CTACGGTA--CAGACTTT-------CAAAA---CATTTACCAAA-ATT-A---CAATG---------T--C-GGATAA-A-TCTCCC--AA--------GTAAC-----TG-AACGTG--GCGGCT-CG-GGTCTTGTAT--TTAAA-ATG-A-G---AAGACCAAGTTAA-TTTGAT---AAAGAA-AAAA-C-TTCAT-ACTTTATTTTAT-TAG-ATA---TT-TC--CGA-----TTAATA-TGAATTATTT-CCATA--G-GTCCAG-GG--ATGGAAGC-GCA-CGTGTTA-CTT--TAAAA-TGT--ACGGGGG------G---GGGGGGGG-----ACT-CAACT-TAC--------C-T-T--GG------ATAAGTT-T---A------ACC-CG--CCACTT-GCTTT-AAATAATA-TCTTG---TGTCAT-CTACCCC--CAATTC-CT-C-ATTTTCT-CTATCCC------------CATT---GAG-GCATGTA-ATTA-CGCA---GCA-CG--ATC-----ATTTCAAAA-GAGAAC-A-TTA---AT-CTAG--T--AA--TTATC-AAAA---TA---GATGC--GAG-CT--GGAAAGT---------CATACATGCATG-------TTCG-ACTGAGTTTC-AGGG-----ATG---GT--G-TGTTTAAG-A-TATT-T-TTAAACAAAG------AAAT-ATATAGC-T-TG---GTG-AACA-TAAGTA--TC-AGGTAGCCTAA-T----AAT--GCTAG------GACGT-------GGT-A-GTTACCAG-AGTAT-AAAG-AA-A-CGTGTGGAGACAG-----------A-AT-----CCCA-A--------TG-ATC-AAATGG-ATTTC----AG--T--TTCATACTT--TCCG-ATT---TATAT---GTA-A-GCATTACTATA-AATATCAGGTGGG-GGTGTCAAT-A------ATG-TAATTA-CT---ATTCT-ATTTTCAGA-AAAG-Tttcacgcgttg
gi|7 : tt-T--GCA-------TATCA-TGCT--ATA-AA-TGAAA----AATGC---TTTC-ATTA-----TTTCATCAG-G-GCTAATGTTTTA-CCATCG--CTACGA-A--CAGACTAT-------CAAAA--CTAA--ACCAAA-TTTTA---CAATGCACGTGTAAT--T-GGATAACA-T-TATCCAAA--------GTAGTATT--TG-TATGCGCAGCG-----G-GGTCT-GCAT--TTAAA-A------------ACCAAGT-AA-TTTGAT---TAA--A-AAAA-C-CT----ACTTTTATTTAT-TAG-ATA---TTGCC--CGA-----TTA-TA-TAAATTATTTTCCATA--G-ATCCAG-GG--ATGGAGGC-GCA-----------------GA-TGC--ACTGGGG------GCCAGGGGGGGG--------------------------------GGG------TTAAGTT-T--GA------AAC-TA--CCATTTTGT-TT-------TT-CTTTG---TGTCAT-CTACTCT--CTATTC-CT-C-ATTTTTT-CTGTCCC------------CATT---GAG-ATATGTA-ATTA-CGCA--GGCA-CG-TATC-----ATTTCAAAA-GAGAA--A-TT----ATAT--G--T--AAACTTATC-AAAA---TA---GATGC--GAG-AT--GAGGAAT---------CATGCATGTATG-------TTCG-ACTGAGTTTT-AGGG-----ACG---GTC-A-TGTTTATGAA-TA-T-T-GTGAAC--AG------AAA----ATACC-T-TG---GTG-ATCA-TCAGTA--GT-GGGTATCCTGA-T----AAT--ACCAG------GACGT-------GGT-A-G-CA-CAG-AGTAT-AAAG-AG-A-AGTGTGGAGACAT-----------A-ATTC---ACCA-A--------GT-ATC-AGCAGG-TAATC----AA--T--TCCATACTC--TCCG-A-TTTATGTAT---GTAGG-GCATTACTATA-AATAT-AAGT-AG-GG-GTCAAT-AATATACATG-TAATTAACT---ATTCT-ATTTTCAGA-AA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGAATTAAACATACATTGGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACCAAAACACGTAAAATCAAGATGGGAAGGGGAAGTCGTCTCTTTTTGATAACATTTATTTTCCATGATTTGTAAGCGCGATTGGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTTGTATGACGCTTCTTGAATATAATACCCGGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGCGAAAAATAAACTCACGTTTTCGGAAAGGC
Unaligned ( gi|9 ): GAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACTTTTTATAAGGCTGGGTGGTGTTTTAAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAATATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAAAAGC
Unaligned ( gi|10 ): AAAAGTATTTCCAGAATTCATAAAACGTCGGTCTGACATACAGGAATGTAAACATACATTGTGTCAGAACTTGCTTACTACACTGATATTGATCAAGCAACATTTTATAAGGCTGGTGTGGTGTTAAAAGGTTCCAGAGTAAAGTTATGCAATTTAGATACTGATCATATTATGTAGATTATATTGGTTACACAAAACACGTTAAAATCAAGATGGGAAGGGGGAAGTCGTTCTTTTGATAACATTTATTTTCCATATTTTGTAAGCGCGATGCCGTACATACGGCAATTATCTCTGCGTGCTTCTGCACTGCTGTAATGACGCTTCTTGAATTAATACCCGAAGTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTCGGAA
Unaligned ( gi|11 ): AGGAAAGTATTTCCAGAATTCATAAAACGTCGTCTGACATACAGAATTAAACATACATTGTGTCAGAACTTGCTTACTACACGATATTGATCAAGCAACTTTTTATAAGGCTGGTGTGGTGTTTTAAAGGTCCAGAGTAAAGTTATGCAATTTAGATACTGATCTATATTATGTAGATTAATTTGGTTACAAAACACGTAAAATCAAGATGGGAAGGGGGAGTCGTCTTCTTTTGATAACATTTATTTTCCATATTTGTTAAGCGCGATTGCCGTACATACGGCAAATCTCTGCGGCTTTCTGCACTGCTGTAATGACGCTTCTTGAATATAATACCCGGAAGTTTAAAATTAAATTACGCAAGCGCACTACGTTCCGGATCAAGGAAAGATAACTCACGTTTCGAAA
Unaligned ( gi|12 ): AGGAGTAGGTCGATTTCCAGACCCCAGAAGTGTCTGTCTGACATACTGGACTAGACGTCATATATTTGATAGTGAACAAGCGACCCCGACATTTTATAAATCTGACTGTGCTAAAACATGGAATTCTAAAAGGCCTAGAGTAAATTAAGCTCCTAAGGAAATTCATGCAATATATAATATGGGCTATTTTCTGTTACAAAACACGTAATGGGAAGGGAGAGGTCTCAGCTTTTGATAATCATGCTGATTTTCCGTTATTTTTACATGTAGCGC
Unaligned ( gi|13 ): AGGTATTTCCAGAATTCATAAGCGTCTGTCTGACAAACAGAATTTGACGTACATGTATATTGTGTCAGAACTGGATATTGATCAAGCAACATTTTATAAGGCTGATTGTGGTAGAACACAGGGGTTTTAAAAGATCCCGAGGAAATTTATGCAATATATATAATATACATGTAGATTAA
Unaligned ( gi|15 ): ATATTCTCGGCGGCTGTTCTGCACGTGTGTGTCGTAATGTACAGCTTACCCCTCCTGAATACTAATAACCCGGAATGTTTAGGAAAAGTTAGATATCTCACGGCAACGCGCCACTACGTTCGTGCGATCAAGGAATAGATAACTCACGTTTTCCGGAAAGGTT
Unaligned ( gi|16 ): ATGTATATTGTGCCAGATCTTGCTTACTGATCAAGCGACATTTTTGCTAGGACACAGGGAAATCTACGCAATATATAGTATATATTAGTTTTGGTCACAAAACACGTAAACTCAAGATTAGAAGTGTGTCCTCTTTTTTATAACAT
Unaligned ( gi|18 ): AAGGTAGGTATTTCCAGAATCCATAACCCTGACATACAGAATTAAACTTACATCTATATTGTGTCAGAACATGCTTACTACAATGATATATTGATTAA
Unaligned ( gi|19 ): TACACAAACCTTGACAACACTGGTTACATCCACATATCTTGATCATAGCAACATTTTTATAAGGCTGGTTGTTGGTGTTTTAAAAGGCCCAGAGTG
Unaligned ( gi|22 ): CTCATTTAGGGTATACGTACGTTGATCACAATGTTAACTTCGCCAATTAATACTTTTAAAATG