lowQualScore : 33333333333333333333333333333333333 22222222222222222 1111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 88888888888888888888888888888888888 55 11 11 5555555555 2 1 1 5555555 11 2 22222222 11 2222222222222 11 22222 11 22222 4444444444444444 22 444444 1 9999999999999999999999999999999999 1 7777777777 3333 666666666666666666666666666666 5555555 66666666666666666 33333333333333333 1 22 555555 1 0000000000000000000000 222 2222 222 33333 1 4444 1 33 4444444444 11 22 33333333333 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 1 99999999999999999999999999999
lowQualScore : 22 6 6 33333333333333333333333333333333333 6 55 6 2 77 88 99 2 0000000000 6 6 7 6 0 3 1111111 88 7 8 0 99999999 33 2 9999999999999 6 6 6 6 6 33 22 1 00000 11 0 44 99999 0 8888888888888888 33 7 7 7 000000 3 0 8888888888888888888888888888888888 5 55 5555555555 7777 88 3 666666666666666666666666666666 6 3333333 00000000000000000 11111111111111111 5 77 4 777777 6 6 4 5 9999999999999999999999 222 4 1111 333 55555 7 2 2222 6 5 44 6 3 3333333333 2 22 33 44 2 6 11111111111 3 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 444444 7 44444444444444444444444444444
lowQualScore : .. . . ................................... . .. . . .. .. .. . .......... . . . . . . ....... .. . . . ........ .. . ............. . . . . . .. .. . ..... .. . .. ..... . ................ .. . . . ...... . . .................................. . .. .......... .... .. . .............................. . ....... ................. ................. . .. . ...... . . . . ...................... ... . .... ... ..... . . .... . . .. . . .......... . .. .. .. . . ........... . .................................................................................. ...... . .............................
lowQualScore : 00 0 0 00000000000000000000000000000000000 0 00 0 5 00 55 55 5 0000000000 0 7 3 0 0 3 7777777 33 3 7 2 88888888 88 5 0000000000000 7 7 7 7 7 88 22 0 22222 00 6 88 88888 8 5555555555555555 88 3 3 3 777777 3 7 3333333333333333333333333333333333 0 55 5555555555 5555 00 0 000000000000000000000000000000 0 5555555 55555555555555555 55555555555555555 0 55 0 555555 0 0 0 0 7777777777777777777777 333 0 3333 333 00000 0 5 5555 0 0 00 0 5 8888888888 0 00 88 22 2 7 77777777777 3 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333 0 88888888888888888888888888888
consensus : TTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAAAAACAAACAGGACTGTCCTGTTTATTTAAAAA--TTATCGAAACTTATNCNNTNTATAAGATCAAAATCNAGCACCNATAAGATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTA-TTA-TTAAAAANTAATC-CCAC--AGACTAAGT-AAAATCT---CTTANAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTTATTGGNAAAANT-TATTCATT--------------ANTTCAC-ATGAACAGAAAAAAAAGTTTAT-----AA-ATTTTTGTTACGCG-AT---ATCTG--TTAGAA------------GGCTTTGAATGAAGNNAATTATCGCNTTATTTTCCCCGCANCACAAAANNTGNTCTATATTCTAAATNCTACGCACNTACATGT--ATTCAAAAGAACTGAAATCTTCATTTTGATAAAATCTTCAACCTTCAGCTTNAATTNTGATTTTGTTCATGACTA-TC-----------GTGCAAAACCATTATCTACNAGTAATACATGTAGCACAATTCTACACCAGANTCAA-----GAGTAC-----TATTACTTTCATCCT--NTAGNTC-GATCGGTAG---AGCAA--G--TGTTGTTCNTTAATGTTCAGTGTGGTATTGTATCAACCTAGATTTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACCATNATATCCTCTTTATATTGA----------ATTAACATTTCATTT-AAAAATTATTAATNAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCAGA----------C--------------C----A--A---AAAAAGGG---------G----GGTTGGGGTGAAAA---------GTACCT-T----AAAAAATCAAGTGCTAGA-CCCCCC-------AC------------AAATTCCTGGATCCGCCTATG
Reference ( gi|1 ) : TTCAATACGGCTGATTCAGTACTAAATT-----ATT------------------TCCT-TTT-TTCAAAAAAATTATCGAAATCTATGCATTTTATAAGATCAAAATCAAGCACCGAT-A-ATTAA--TAAACACAATTTATGGA-TTACTTCACATTGTA-TTA-TTAAAAATT--TC-CCAC--AGACTAAGTGAAAATCT---CTT-TAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCAAAG--TTCATTGAAAAAAAA-TATTCATT--------------ACTTCA--ATGAACAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTAT-TG-AT---ATATGAATTAGAA------------AGCTTTGAATGAAGCAAA--ATGAC---ATTTTCCCC---CTACAAAAATTGATTT---CTCT--ATGCTATA---GTACATGTTGATTCAAAAGAACTGAAGTCTTTATTTTGATAAATTTTTCAACCTTCAACTTAAATTTTGATATTTTTCATGACTAATCGTTAAAGACTAGTGCAAAATAATTA--TATTAGTA------GTAACACAATTTCACACTAAATTCAACTTTTGAGTACTA---TATTACTTTCATCCT--TTAGTTT-GTTCGGTAG---AGCAA--G--TGTTGTACCTTAA----CAGCGTGCTATTATATCAACCTAGATAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTGATT--AAAAATTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGCCCCCAGA----------C--------------C----A--A---AAAAAGG----------G----GGTTGGGGTGAAAAGTAC---ATGTACCT-T----AAAAAATCAAGAGCTAG---------------AC------------AAATTCCTGGATCCGCCTATG
gi|3 : TTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAAAAACAAACAGGACTGTCCTGTTTATTTAAAAA--TTATCAAAACTTATTCCATGTATAAGATCAAAATTTAGCACCGATAA-ATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTA-
gi|5 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgtcacctccggtgaaacagtatcaaaggtgcaaacagtaattctggaacatgcgtgtcagagtttatggatatATCGAAATTTATGCATTT-ATAAGATCAAAATCA-GCACCTAT-AGAT--A--TAAACACAATTTACGGATTTAC-TCACATCGTATTTATTTAAAAAGGAATC-CCAC--AACCTAAGT-CAAATAT---TTTATAAATTTTACGGACTT-----CACCTAAAATA-GGAAAAAATATTAA-AAGGTGGCAAGCAGTTAACTCTGGAGCAAGACGGTTTTCAAAGGTTTCATTGGAAAAAAATTATTCA-T--------------AATTCAC-ATGAACAG-AAAAAAAGTTTAT-----AA-ATTTTTGTTTTGTG-ATTAAATCTGTATTAGAA------------
gi|17 : -TTACTTCACATCGTA-TTA-TTAAAAAAT--ACTCCAC--AGACTAAGTAAAACTCT---CTTATAA--TTTACGGACTT------ACCC---ATA-TGAAACAATATT-A-AAGGT-GCAATCAG-TAgagtctattctgtgtgttactttcagactcgcaaaatgacatctctctctcgcccttgacccaaaaaaatt
gi|12 : tA-TTT-TAAAAAATTAATT-TCACGAAGAC-AAGT-AAAATTTAAACAT-AAA--TTAATG-ACCT-----CA--T---ATT-TGAAACAATATT-A-AAGGT-ACAAGGAA-TAA---TGG------------TTTGGAG--TTTATTGACAAAACT-TGTTAATT--------------
gi|8 : tcggggtagtttgtcgaaaacgaattagggAATCT---ATT-GGA--GTTACGGATTTATTTTCA--T---ATA-TTAAACAAT-TT-ATAAGGT-GCAAGTCG-TAA---TGGAGCAAA-CGT-TTTCGGAG--TTTATGGCAAA------ACTCATT--------------AATTTA--tacaggtat
gi|3 : caggagagtttatagaaaacgaacgtagctaggtttttaattaatttcacgctaatcactggtcacatcaaatT-----CACCT---CCGGTGAAACAGTATC-A-AAGGT-GCAAACAG-TAATTCTGGAACATG-CG--TGTCAGAG--TTTATGGAtgcaaatatatg
gi|4 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgTA-TAAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAACGAG-TG--TTTCAAAG--TTCATTGGCAAAATT-TATTCATTTATAAGTATAGATTATTTCA--ATGA--AGAGAAAAAGGTCTATGCATCAATATATGTGTTACAAA-AT---ATAT---TCAG-A------------GGCTTTGAATGAAGAAAA--ATTGCATTATTTTCCCC---ACACAAAAATTGATTTATATTCTAAATGCTACACACGTACAT----ATTTAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACTTTCAGC-TAAA-TTTAATTTTGTTCATGATTA---------------TGCAAAATCATTATCTATAAGTA------ATAACACAATTCTACACCAGATT-AA-----GAGTAC-----TATTG-TTTCATCCT--TTAGCTC-GATCGGTAA---AGCAAGTG--TGTTGTTCCTTAATGTTCAGTGTGATATTGTtatttcaatgtggctgattcaatattaaattcatggattaaaaaacaaacaggactgtcctgtttatttaaaaattatcaaaacttattccatgtataagatcaaaatttagcaccgataaattaatgtgaacacaatttgcggacttacttcacatcgta
gi|7 : gATT--------------ATTTCATAAGAAACAGAAAA--AAGTTTA------AA-ACTTTTGACAT-CGCAT---ATCTG-TTTAGAAAACTCTATTAAGAGCTTT-AATGAAGCCAATTATCACTT-ATTTTTCCCGCACTACAAAATATGCTCT---TTCT--ATTC-ATG---TTATATGT
gi|2 : aaagttatgttgtcaaaaatttattaatttataagcaCAAAAGAACTGAAATCTTCATTTTGATAA-------AATCTTCAA-TTCAATTGTG------TTCATGAC---TC-----------GTGCAAAACCATTA--TACTAGTAATACATGTAGCACAATTTTACACCAAAATCAA--------------------ATTTTTATCCA--CTAGGTC-GATCGGTAG---AGCAA--GTATGCTGTTCATTAA----CAGTGTGGTATTATATCAACCTAGATTTAAGAcactgtaacatctcgccttgactaagaaaatgcactccctactatgttaaa
gi|18 : TTTTGAGTACTAAAATATTACTTTCATCCTGGGTAGTTTCGATCGGTAGAAAAGCAA--C--TGTTGTaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacaccaaacaatgatattctctatatgttgaattaatatttcatttaaaaaattatcaatagaactaagcattttcacgtataaattgtctccagaccccctccccccacccccatagggggtgagaaatatcttaaaaagttaagtgctagacccccccccctttccctttcacaaattcctggat
gi|2 : CAAACAATGATATTCTCTATATGTTGA----------ATTAATATTTCATTTAAAAAATTATCAATAGAAC-TAAGCATTTTCACGTAT-----------AAATTGTCTCCAGACCCCCTCCCCC--------------C----ACCC---CCATAGG----------G----GGT----GAGAAA-----------TATCT-T----AAAAAGTTAAGTGCTAG---------------AC------------gttctacaacacttagtagcg
gi|6 : caaaagaactgaaatcttcattttgataaaatcttcaattcaattgtgttcatgactcgtgcaaaaccattatactagtaatacatgtagcacaattttacaccaaaatcaaatttttatccactaggtcgatcggtagagcaagtatgctgttcattaacagtgtggtattatatcaacctagatttaagaaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacacCAAACCATTACGTCCTCTTTATATTGA----------ATCAATATTTCATTT-AAAAAATATTAATTAAAC-TAAGCATTTTCACGTATAACCTGTCTCCAGATATCTCTAAGA----------TGTTATGCACACGAGC----A--AGAGAAAAAAA----------G--------GGGGTGAAAATTGTGGAAAGTACCTAT----AAAAAATTAAGTGCTAGATCCCCCCCCCCTTCAC------------AAATTCCTGGATCCACCccccccccctttccctttcacaaattcctggat
gi|10 : aagtgatttttacaactggtaagattccttcgctattaaaaacaattttaatgttacacAACCATTATATCCTCTTTATATTGA----------ATTAACGTT-GATT--AAAAAT----GATAAAATATAAGCATTTTCACGTAT-----------AGATAGTCCCCAGA----------C--------------C----A--A---AAAAAGGGGGTT-----G----GGTTGGGGTGAAAA---------GTACCT-T----AAAAAATCAAGTGCTAGACCCCCCCTTTC---AC------------AAATCCCTGGATCCGCCT
gi|9 : ATAATATCATCTTTATATTGATGTGTATTGAATTGACATTTCATA--AAAAATTTATAATTAAAC-TAAGCATTTTCACGTAT-----------AGATGGTCCCCAGA----------C--------------C----AGTA---AAAAA
gi|16 : aatatttttaatgttacaccgaATCAATGAAAC-TAAGCATTTTCACATAG-----------ATATAGTCCCCAGA----------C--------------C----A--A---AAAAGGGGTTGGGGGTTG----GGTTGGGGTGAAA---AC------TACCT-T----AAAAAGTCAAGTGCTAG---------------AC------------tcctaaagcaatcaagttctacaacacccccccccctcttcacaaattcctggatctgc
gi|13 : TTAATAAAAC-TAAGCATTTTCACGCAT-----------AGATAGTCTCTAGA----------A--------------CAAAAA--A---AAAAAGG----------GGTTAGGTTGGGGTAAAAA---------GTACCT-C----AAAAAATCAAGTGCTAGACCCCCCCCCCTTTCAC------------AAATTCCTGGATCCGCCTAccc
gi|19 : TACCT-TTAAAAAAAAATCAAGTGCTAG---------------ACCTCCCCTTTCAAAAAATCCTGGATCCGCCTATG
gi|9 : ---------------AC------------AAATTCCTGGATCTGCt
gi|21 : aatatttttaatgttacaccgaataatatcatctttatattgatgtgtattgaattgacatttcataaaaaatttataattaaactaagcattttcacgtatagatggtccccagaccagtaaaaaatcctaaagcaatcaagttctacaacacccccccccctcttc---------------AC------------AAATTCCTGGATCCGCCTATG
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTTATGTGATTATCTATATACATGGCTGATTCAAGACTAAAATCACAAATTGAAGAAACGAATACATGTAAGCACGTTTTATTCAACAATTATCAAAACTTATTTTTCTGTACGATCAAAATTATACGTCCCTAACTATAACAGTGGGTTTACTTTATATCATA
Unaligned ( gi|14 ): CCAAGCAAGCACGAGAAATCACAATAAGCTGCATATATACACCAATGTACAATAGTATATATAATGTATAACTGTGATACCCACAACATTTCTTTTTCCAATATGATGGTCCCATAGCATTGGCTTAGATCCGC
Unaligned ( gi|15 ): ATTAAGCATGCGTACACATATCAGTACAACATACATGTAATACTCCGAAATACTCCACCACTACCATCAACACAATACCCATAATGATGGTTCCATAGCACTGGCTTAGATCTGCGCAAAG
Unaligned ( gi|20 ): CCCCCCCTTCAAAAAACCCTGGGTCCGCCCTGATATATATGTA
Alignments
lowQualScore : 11111111111111
lowQualScore : 11111 777777777777777777777777 22 11 1 1 55555555555 1 1 1 11 1 11111111 11111 111 11 111 33333333333333 1 11 222222 1 33333333333333333 1 55555555555555 33333333 33333 333 11 22222 4444 111111111 333333 777777777777777777 22 555555 444444444444444444444 111 11 111 22222 4444 3333333333 22222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 111111 111111 11111111111111
lowQualScore : 1 77777 555555555555555555555555 6 00 1 88 5555 0 0 1 99999999999 2 0 0 0 0 1 66 2 33 3 0 8 5 3 44 88888888 0 66666 6 000 5 5 5 5 5 9 6 55 0 77 3 77 111 2 99999999999999 1 9 22 3 44 888888 0 00000000000000000 0 22222222222222 6 22 44444444 88888 22 1 0 777 88 1 77777 5555 0 555555555 1 000000 888888888888888888 0 22 11 000000 0 0 0 1 6 000000000000000000000 6 444 11 777 33333 1 4444 3 0 88 1 5555555555 0 6 8 0 5 1 5 77777777777 55555555555555555555555555555555555555555555555555555555555555555555555555555 666666 111111 888 00000000000000
lowQualScore : . ..... ........................ . .. . .. .... . . . ........... . . . . . . .. . .. . . . . . .. ........ . ..... . ... . . . . . . . .. . .. . .. ... . .............. . . .. . .. ...... . ................. . .............. . .. ........ ..... .. . . ... .. . ..... .... . ......... . ...... .................. . .. .. ...... . . . . . ..................... . ... .. ... ..... . .... . . .. . .......... . . . . . . . ........... ............................................................................. ...... ...... ... ..............
lowQualScore : 0 00000 777777777777777777777777 7 77 0 33 5555 8 8 0 00000000000 5 5 8 0 0 0 22 5 88 2 0 0 0 2 88 00000000 8 77777 7 000 7 7 7 7 7 3 7 88 7 99 3 77 777 5 22222222222222 0 0 55 2 00 222222 0 22222222222222222 0 55555555555555 7 00 00000000 77777 00 0 7 777 55 0 55555 5555 7 000000000 0 777777 000000000000000000 7 33 77 333333 7 7 7 0 7 888888888888888888888 5 888 00 555 88888 0 3333 7 7 00 0 0000000000 8 0 0 8 7 0 7 11111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 444444 888888 888 66666666666666
consensus : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTGTTT-ATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAA-ATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCTCTTATA-A--T---TTACGGACTT-----CACCTA---TA-TGAAACAATATTA-AA-GGTG-CAAGCAGT-AACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGGCAAAAN-TTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATT-AGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCTAAATGCTACACACGTACATGTTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAGCTTAAATT-TGAT-TTGTTCATGACTA-TCGT-----------GCAAAATCATTAT-TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTACTA-----T--TACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGTTCCTTAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCCCCCTTT------CACAAATTCCTGGATCCGCCTATG
Reference ( family-2057 ) : TTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAA-AAACAAACAGGAC-TGT---CCTGTTT-ATTTAAAAA--TTATCGAAACTTATNCNNTNTATAAGATCAAAATCNAGCACCNATAAGATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCTCTTANA-A--T---TTACGGACTT-----CACCTA---TA-TGAAACAATATTA-AA-GGTG-CAAGCAGT-AACTCTGGAGCAAG-CG--TTTCGGAG--TTTATTGGNAAAAN-TTAT---TCATT--------------ANTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ATTTTTGTTA-CGCGAT---ATCTG--TT-AGAAG------------GCTTTGAATGAAGNNAATTATCGCNTTATTTTCCCCGCANCACAAAANNTGNTCTATATTCTAAATNCTACGCACNTACATGT--ATTCAAAAGAACTGAAATCTTCATTTTGATAAAATCTTCAACCTTCAGCTTNAATTNTGATTTTGTTCATGACTA-TCGT-----------GCAAAACCATTATCTACNAGTAATACATGTAGCACAATTCTACACCAGANTCAA-----GAGTACTA-----T--TACTTTCATCCT--NTAG-NTCGATCGGTAG---AGCAA--G--TGTTGTTCNTTAATGTTCAGTGTGGTATTGTATCAACCTAGATTTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACCATNATATCCTCTTTATATTGA----------ATTAACATTTCATTTAAAAA-TTATTAATNAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCC--------------CACAAATTCCTGGATCCGCCTATG
gi|1 : TTCAATACGGCTGATTCAGTACTAAATT-----ATT--------------------T---CCT-TTT--TTCAAAAAAATTATCGAAATCTATGCATTTTATAAGATCAAAATCAAGCACCGATAA--TTAATA--AACACAATTTATGGA-TTACTTCACATTGTATT-ATT-AAAAATT--TCCCAC--AGACTAAGTGAAAA-TCTCTT-TA-A--T---TTACGGACTT-----CACCTA---TA-TGAAACAATATTA-AA-GGTG-CAAGCAGT-AACTCTGGAGCAAG-CG--TTTCAAAG--TTCATTGAAAAAAA-ATAT---TCATT--------------ACTTCA-ATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-T-TGAT---ATATGAATT-AGAAA------------GCTTTGAATGAAGCAAA--ATGAC---ATTTTCCCC---CTACAAAAATTGATTT---CTCTA--TGCTATA---GTACATGTTGATTCAAAAGAACTGAAGTCTTTATTTTGATAAATTTTTCAACCTTCAACTTAAATTTTGATATTTTTCATGACTAATCGTTAAAGACTAGTGCAAAATAATTAT--ATTAGTA------GTAACACAATTTCACACTAAATTCAACTTTTGAGTACTA-----TATTACTTTCATCCT--TTAG-TTTGTTCGGTAG---AGCAA--G--TGTTGTACCTTAA----CAGCGTGCTATTATATCAACCTAGATAAAAGA
gi|1 : CGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTGATT-AAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGCCCCCA---------------GA----------CCA--A----AAAAA-----GG---------G---G----GTTGGG----GTGAAAAGTACATGTACCT-T----AAAAAATCAAGAGCT---AG---------------------ACAAATTCCTGGATCCGCCTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaaccattatatcctctttatattgaattaacgtttgattaaaaattattaataaaactaagcattttcacgtatagatagcccccagaccaaaaaaagggggttggggtgaaaagtacatgtaccttaaaaaatcaagagctagacaaattcctggatccgcctatg
gi|10 : ttcaatacggctgattcagtactaaattatttccttttttcaaaaaaattatcgaaatctatgcattttataagatcaaaatcaagcaccgataattaataaacacaatttatggattacttcacattgtattattaaaaatttcccacagactaagtgaaaatctctttaatttacggacttcacctatatgaaacaatattaaaggtgcaagcagtaactctggagcaagcgtttcaaagttcattgaaaaaaaatattcattacttcaatgaacagaaaaaaaagtttataaacttttgttattgatatatgaattagaaagctttgaatgaagcaaaatgacattttccccctacaaaaattgatttctctatgctatagtacatgttgattcaaaagaactgaagtctttattttgataaatttttcaaccttcaacttaaattttgatatttttcatgactaatcgttaaagactagtgcaaaataattatattagtagtaacacaatttcacactaaattcaacttttgagtactatattactttcatcctttagtttgttcggtagagcaagtgttgtaccttaacagcgtgctattatatcaacctagataaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATTATATCCTCTTTATATTGA----------ATTAACGTT--GATTAAAAA-T----GATAAAATATAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---GTTGGGTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCCTTT---------CACAAATCCCTGGATCCGCCT
gi|11 : TGGCTGATTCAAGACTAAAATCACAAATTGAAGAAACGAATA---CATGTAAGCACGTTTTATTCAACAA--TTATCAAAACTTATT-TTTCTGTACGATCAAAATTATACGTCCCTA--ACT-AT---AACA------GTGGGTTTACTTTATATCATA
gi|12 : tttatgtgattatctatatacaATT-TTA-AAAAATTAATTTCACGAAGAC-AAGT-AAAA-T---TTAAACA--TAAATTAATGACCT-----CA--TA---TT-TGAAACAATATTA-AA-GGTA-CAAGGAAT-AA---TGG------------TTTGGAG--TTTATTGACAAAAC-TTGT---TAATT--------------
gi|13 : tcggggtagtttgtcgaaaacgaattagggTTAATAAAAC-TAAGCATTTTCACGCAT-----------AGATAGTCTCTA---------------GA----------ACA--A----AAAAAAAAAGGG---------GTTAG----GTTGGG----GTAAAAA------GTACCT-C----AAAAAATCAAGTGCT---AGACCCCCCCCCCTTT------CACAAATTCCTGGATCCGCCTAtacaggtat
gi|16 : ATCAATGAAAC-TAAGCATTTTCACATAG-----------ATATAGTCCCCA---------------GA----------CCA--A----AAAAG----GGGTTGGGGGTTG---G----GTTGGG----GTGAAAA------CTACCT-T----AAAAAGTCAAGTGCT---AGACCCC
gi|17 : TTACTTCACATCGTATT-ATT-AAAAAATACTCC-AC--AGACTAAGT-AAAACTCTCTTATA-A--T---TTACGGACTT------ACCCA---TA-TGAAACAATATTA-AA-GGTG-CAATCAGT-A
gi|18 : t-----GAGTACTAAAATAT--TACTTTCATCCTGGGTAGTTTCGATCGGTAGAAAAGCAA--C--TGTTGT
gi|19 : ttttTACCT-TTAAAAAAAAATCAAGTGCT---AGACCTCCCCTTT---------CAAAAAATCCTGGATCCGCCTATGgttctacaacacttagtagcg
gi|2 : CAAAAGAACTGAAATCTTCATTTTGATAAAATCTTCAA--------TTCAATTG------TGTTCATGAC---TCGT-----------GCAAAACCATTA--TACTAGTAATACATGTAGCACAATTTTACACCAAAATCAA----------------------ATTTTTATCCA--CTAG-GTCGATCGGTAG---AGCAA--GTATGCTGTTCATTAA----CAGTGTGGTATTATATCAACCTAGATTTAAGAt
gi|2 : CAAACAATGATATTCTCTATATGTTGA----------ATTAATATTTCATTTAAAAAATTATCAATAGAAC-TAAGCATTTTCACGTAT-----------AAATTGTCTCCA---------------GACCCCCTCCCCCCACCC----CCATA----GGG---------G------------------GTGAGAA------ATATCT-T----AAAAAGTTAAGTGCT---AGACCCCCCCCCCTTTCCCTTTCACAAATTCCTGGATaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacaccaaacaatgatattctctatatgttgaattaatatttcatttaaaaaattatcaatagaactaagcattttcacgtataaattgtctccagaccccctccccccacccccatagggggtgagaaatatcttaaaaagttaagtgctagacccccccccctttccctttcacaaattcctggat
gi|21 : caaaagaactgaaatcttcattttgataaaatcttcaattcaattgtgttcatgactcgtgcaaaaccattatactagtaatacatgtagcacaattttacaccaaaatcaaatttttatccactaggtcgatcggtagagcaagtatgctgttcattaacagtgtggtattatatcaacctagatttaagaaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacac--------------CACAAATTCCTGGATCCGCCTATG
gi|3 : ctttT-----CACCTC---CGGTGAAACAGTATCA-AA-GGTG-CAAACAGT-AATTCTGGAACATG-CG--TGTCAGAG--TTTAT
gi|3 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgTTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAA-AAACAAACAGGAC-TGT---CCTGTTT-ATTTAAAAA--TTATCAAAACTTATTCCATGTATAAGATCAAAATTTAGCACCGATAA-ATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTAggatatttcaatgtggctgattcaatattaaattcatggattaaaaaacaaacaggactgtcctgtttatttaaaaattatcaaaacttattccatgtataagatcaaaatttagcaccgataaattaatgtgaacacaatttgcggacttacttcacatcgta
gi|4 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgtcacctccggtgaaacagtatcaaaggtgcaaacagtaattctggaacatgcgtgtcagagtttatggatat---TA-TAAAACAATATTA-AA-GGTG-CAAGCAGT-AACTCTGGAACGAG-TG--TTTCAAAG--TTCATTGGCAAAAT-TTAT---TCATTTATAAGTATAGATTATTTCA-ATGAA---GAGAAAAAGGTCTATGCATCAATATATGTGTTA-CAAAAT---ATAT---TC-AGA-G------------GCTTTGAATGAAGAAAA--ATTGCATTATTTTCCCC---ACACAAAAATTGATTTATATTCTAAATGCTACACACGTACAT----ATTTAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACTTTCAGC-TAAATT-TAATTTTGTTCATGATTA----T-----------GCAAAATCATTATCTATAAGTAA------TAACACAATTCTACACCAGATT-AA-----GAGTACTA-----T--TG-TTTCATCCT--TTAG-CTCGATCGGTAA---AGCAAGTG--TGTTGTTCCTTAATGTTCAGTGTGATATTGT
gi|5 : gATCGAAATTTATGCATT-TATAAGATCAAAATC-AGCACCTATAG-----ATATAAACACAATTTACGGATTTACT-CACATCGTATTTATTTAAAAAGGAATCCCAC--AACCTAAGT-CAAA-TATTTTATA-AATT---TTACGGACTT-----CACCTAAAATA-GGAAAAAATATTA-AAAGGTGGCAAGCAGTTAACTCTGGAGCAAGACGGTTTTCAAAGGTTTCATTGGAAAAAAATTAT---TCAT---------------AATTCACATGAA-CAGAAAA-AAAGTTTAT-----AA-ATTTTTGTTT-TGTGATTAAATCTGTATT-AGAAG------------
gi|6 : CAAACCATTACGTCCTCTTTATATTGA----------ATCAATATTTCATTTAAAAA-ATATTAATTAAAC-TAAGCATTTTCACGTATAACCTGTCTCCAGATA-TCTCTAAGATGTTATGCACACGA----------GCA--AGAGAAAAAA----AGG---------G---G----GT-GAAAATTGTGGAAA------GTACCTAT----AAAAAATTAAGTGCT---AGATCCCCCCCCCCTT------CACAAATTCCTGGATCCACCagtctattctgtgtgttactttcagactcgcaaaatgacatctctctctcgcccttgacccaaaaaaatt
gi|7 : aagtgatttttacaactggtaagattccttcgctattaaaaacaattttaatgttacacAA--TTTATT-----AAT-TTATAAGCAATT--------------ATTTCATAAGAAACAGAAAAAA--GTTTA------AA-ACTTTTGACATCGC-AT---ATCTG--TTTAGAAAACTCTATTAAGAGCTTT-AATGAAGCCAATTATCAC-TTATTTTTCCCGCACTACAAAATATGCTCT---TTCTA
gi|8 : aaagttatgttgtcaaaAA-TCTATTGGA-G--T---T-ACGGATTTATTTTCA--TA---TA-TTAAACAAT-TTATAA-GGTG-CAAGTCGT-AA---TGGAGCAAA-CGT-TTTCGGAG--TTTA-TGGCAAAAC-TCAT---TAATT--------------ttcatgttatatgtcactgtaacatctcgccttgactaagaaaatgcactccctactatgttaaa
gi|9 : caggagagtttatagaaaacgaacgtagctaggtttttaattaatttcacgctaatcactggtcacatcaaatATAATATCATCTTTATATTGATGTGTATTGAATTGACATTTCATAAAAAAT-TTAT-AATTAAAC-TAAGCATTTTCACGTAT-----------AGATGGTCCCCA---------------GA----------CCA-----------------------------------------------GTAAAAA------AT-CCT-A----AAGCAATCAAGTTCTACAACACCCCCCCCCCTCTT-----CACAAATTCCTGGATCTGCtatgcaaatatatg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCAAGCAAGCACGAGAAATCACAATAAGCTGCATATATACACCAATGTACAATAGTATATATAATGTATAACTGTGATACCCACAACATTTCTTTTTCCAATATGATGGTCCCATAGCATTGGCTTAGATCCGC
Unaligned ( gi|15 ): ATTAAGCATGCGTACACATATCAGTACAACATACATGTAATACTCCGAAATACTCCACCACTACCATCAACACAATACCCATAATGATGGTTCCATAGCACTGGCTTAGATCTGCGCAAAG
Unaligned ( gi|20 ): CCCCCCCTTCAAAAAACCCTGGGTCCGCCCTGATATATATGTA
Alignments
lowQualScore : 11111 77777777777777777777777777777 11 1 333333333 1 1 11 1 111 11 11111 111 11 55555555555555555555555555555 1 1 11 222222 1 22222 111 222 5555555555555 11 22 222 222 3333 4444444 1 444444 11 4444444444444444 8888888888888888 33 444444 44444444444444444444 111 11 111 22222 1 1 2222 3333333333 22222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 111111 111111 111111
lowQualScore : 66666 44444444444444444444444444444 7 88 444 0 9 1 555555555 2 0 0 0 0 1 66 6 33 3 0 8 444 0 3 11 0 66666 6 111 5 5 5 5 5 9 6 55 0 99 8 1 33333333333333333333333333333 1 9 0 2 66 888888 0 55555 777 1 666 4444444444444 6 88 44 00 333 333 2222 0 0000000 3 888888 6 2 0 00 1111111111111111 8888888888888888 77 7 000000 6 33333333333333333333 6 444 00 777 33333 0 0 1111 0 1 22 0 1 5555555555 0 6 8 0 5 0 5 77777777777 55555555555555555555555555555555555555555555555555555555555555555555555555555 666666 111111 888 7 666666 5
lowQualScore : ..... ............................. . .. ... . . . ......... . . . . . . .. . .. . . . ... . . .. . ..... . ... . . . . . . . .. . .. . . ............................. . . . . .. ...... . ..... ... . ... ............. . .. .. .. ... ... .... . ....... . ...... . . . .. ................ ................ .. . ...... . .................... . ... .. ... ..... . . .... . . .. . . .......... . . . . . . . ........... ............................................................................. ...... ...... ... . ...... .
lowQualScore : 77777 00000000000000000000000000000 3 33 555 8 8 0 555555555 5 8 8 0 0 0 22 5 88 2 0 0 000 8 8 00 8 77777 7 777 7 7 7 7 7 3 7 88 7 22 0 0 00000000000000000000000000000 2 0 0 5 22 222222 0 22222 555 0 000 5555555555555 7 33 33 77 333 333 7777 7 7777777 3 333333 5 5 8 33 3333333333333333 7777777777777777 00 3 000000 7 88888888888888888888 5 555 88 555 88888 0 0 2222 7 0 00 7 0 0000000000 8 0 0 8 7 6 7 11111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 444444 888888 888 6 444444 0
consensus : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTATT-----------NATT--------------ATTTCACATG-AACAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAA------------GGCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCTA---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
Reference ( family-2057 ) : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTATT-----------NATT--------------ATTTCACATG-AACAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAA------------GGCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCTA--AATGCTACA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAGCTTAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTAT-TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
gi|1 : TTCAATACGGCTGATTCAGTACTAAATT-----ATT--------------------T---CCT--TTT-TTCAAAAAAATTATCGAAATCTATGCATTTTATAAGATCAAAATCAAGCACCGATAA-TTAATA--AACACAATTTATGGATT-ACTTCACATTGTATT-ATT-AAAAATT--TCCCAC--AGACTAAGTGAAAA-TCT---CTT-TAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCAAAG--TTCATTGA-AAAAAAATATT-----------CATT--------------ACTTCA-ATG-AACAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-T-TGAT---ATATGAATTAGAA------------AGCTTTGAATGAAGCAAA--ATGAC---ATTTTCCCC---CTACAAAAATTGATTT---CTCT----ATGCTATA-------GT-ACAT---G--TTGATTCAAAAGAACTGAAGTCTTTATTTTGATAAATTTTTCAACCTTCAACTTAAATTTTGA-TATTTTTCATGACTAATCGTTAAAGACTAGTGCAAAATAATTA--TATTAGT-A-----GTAACACAATTTCACACTAAATTCAACTTTTGAGTACTATA-----TTACTTTCATCCT--TTAG-TTTGTTCGGTAG---AGCAA--G--TGTTGT-ACCT-TAA----CAGCGTGCTATTATATCAACCTAGATAAAAGA
gi|1 : CGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTGATT-AAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGCCCCCA---------------GA----------CCA--A----AAAAA-----GG---------G---G----GTTGGG----GTGAAAAGTACATGTACCT-T----AAAAAATCAAGAGCT---AG----------------------ACAAATTCCTGGATCCGCCTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaaccattatatcctctttatattgaattaacgtttgattaaaaattattaataaaactaagcattttcacgtatagatagcccccagaccaaaaaaagggggttggggtgaaaagtacatgtaccttaaaaaatcaagagctagacaaattcctggatccgcctatg
gi|10 : ttcaatacggctgattcagtactaaattatttccttttttcaaaaaaattatcgaaatctatgcattttataagatcaaaatcaagcaccgataattaataaacacaatttatggattacttcacattgtattattaaaaatttcccacagactaagtgaaaatctctttaatttacggacttcacctatatgaaacaatattaaaggtgcaagcagtaactctggagcaagcgtttcaaagttcattgaaaaaaaatattcattacttcaatgaacagaaaaaaaagtttataaacttttgttattgatatatgaattagaaagctttgaatgaagcaaaatgacattttccccctacaaaaattgatttctctatgctatagtacatgttgattcaaaagaactgaagtctttattttgataaatttttcaaccttcaacttaaattttgatatttttcatgactaatcgttaaagactagtgcaaaataattatattagtagtaacacaatttcacactaaattcaacttttgagtactatattactttcatcctttagtttgttcggtagagcaagtgttgtaccttaacagcgtgctattatatcaacctagataaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATTATATCCTCTTTATATTGA----------ATTAACGTT--GATTAAAAA-T----GATAAAATATAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---GTTGGGTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGA---CCCC------CCCT-TTCACAAATCCCTGGATCCGCCT
gi|11 : GGCTGATTCAAGACTAAAATCACAAATTGAAGAAACGAATA---CATGTAAGCACGTTTTATTCAACAA--TTATCAAAACTTATT-TTTCTGTACGATCAAAATTATACGTCCCTAACT--AT---AACA------GTGGGTTTACTTTATATCATA
gi|12 : tttatgtgattatctatatacatATT-TTA-AAAAATTAATTTCACGAAGAC-AAGT-AAAA-TTTAAAC--ATAA--ATTAATGACCT-----CA--T---ATT-TGAAACAATATT-A-AAGGT-ACAAGGAA-TAA---TGG------------TTTGGAG--TTTATTGA-CAAAACTTGTT-----------AATT--------------
gi|13 : tcggggtagtttgtcgaaaacgaattagggTTAATAAAAC-TAAGCATTTTCACGCAT-----------AGATAGTCTCTA---------------GA----------ACA--A----AAAAAAAAAGGG---------GTTAG----GTTGGG----GTAAAAA------GTACCT-C----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTAtacaggtat
gi|16 : ATCAATGAAAC-TAAGCATTTTCACATAG-----------ATATAGTCCCCA---------------GA----------CCA--A----AAAAG----GGGTTGGGGGTTG---G----GTTGGG----GTGAAAA------CTACCT-T----AAAAAGTCAAGTGCT---AGACCCC
gi|17 : TTTACTTCACATCGTATT-ATT-AAAAAATACT-CCAC--AGACTAAGT-AAAACTCT---CTTATAA--TTTACGGACTT------ACCC---ATA-TGAAACAATATT-A-AAGGT-GCAATCAG-TA
gi|18 : -----GAGTAC--TAAAATATTACTTTCATCCTGGGTAGTTTCGATCGGTAGAAAAGCAA--C--TGTTGTGTTCTACAA----CA
gi|19 : ttttTACCT-TTAAAAAAAAATCAAGTGCT---AGA---CCTC------CCCT-TTCAAAAAATCCTGGATCCGCCTATGcttagtagcg
gi|2 : CAAAAGAACTGAAATCTTCATTTTGATAAAATCTTCAA--TTCAA--------TTG-----TGTTCATGAC---TC-----------GTGCAAAACCATTA--TACTAGTAATACATGTAGCACAATTTTACACCAAAATCAA----------------------ATTTTTATCCA--CTAG-GTCGATCGGTAG---AGCAA--GTATGCTGT-TCAT-TAA----CAGTGTGGTATTATATCAACCTAGATTTAAGAt
gi|2 : CAAACAATGATATTCTCTATATGTTGA----------ATTAATATTTCATTTAAAAAATTATCAATAGAAC-TAAGCATTTTCACGTAT-----------AAATTGTCTCCA---------------GACCCCCTCCCCCCACCC----CCATA----GGG---------G------------------GTGAGAA------ATATCT-T----AAAAAGTTAAGTGCT---AGACCCCCCCCCCTTTCCCT-TTCACAAATTCCTGGATaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacaccaaacaatgatattctctatatgttgaattaatatttcatttaaaaaattatcaatagaactaagcattttcacgtataaattgtctccagaccccctccccccacccccatagggggtgagaaatatcttaaaaagttaagtgctagacccccccccctttccctttcacaaattcctggat
gi|21 : caaaagaactgaaatcttcattttgataaaatcttcaattcaattgtgttcatgactcgtgcaaaaccattatactagtaatacatgtagcacaattttacaccaaaatcaaatttttatccactaggtcgatcggtagagcaagtatgctgttcattaacagtgtggtattatatcaacctagatttaagaaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacacCT-TTCACAAATTCCTGGATCCGCCTATG
gi|3 : T-----CACCT---CCGGTGAAACAGTATC-A-AAGGT-GCAAACAG-TAATTCTGGAACATG-CG--TGTCAGAG--TTTAT
gi|3 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgTTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAA-AAACAAACAGGAC-TGT---CCTG-TTTATTTAAAAA--TTATCAAAACTTATTCCATGTATAAGATCAAAATTTAGCACCGATAAATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTAggatatttcaatgtggctgattcaatattaaattcatggattaaaaaacaaacaggactgtcctgtttatttaaaaattatcaaaacttattccatgtataagatcaaaatttagcaccgataaattaatgtgaacacaatttgcggacttacttcacatcgta
gi|4 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgtcacctccggtgaaacagtatcaaaggtgcaaacagtaattctggaacatgcgtgtcagagtttatggatatTA-TAAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAACGAG-TG--TTTCAAAG--TTCATTGG-CAAAATTTATT-----------CATTTATAAGTATAGATTATTTCA-ATG-AA--GAGAAAAAGGTCTATGCATCAATATATGTGTTA-CAAAAT---ATAT---TCAGA-------------GGCTTTGAATGAAGAAAA--ATTGCATTATTTTCCCC---ACACAAAAATTGATTTATATTCTA--AATGCTACA---CAC-GT-ACAT---------ATTTAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACTTTCAGC-TAAA-TTTAATT-TTGTTCATGATT-A--------------TGCAAAATCATTATCTATAAGTAA------TAACACAATTCTACACCAGATT-AA-----GAGTAC--TA-----TTG-TTTCATCCT--TTAG-CTCGATCGGTAA---AGCAAGTG--TGTTGT-TCCT-TAATGTTCAGTGTGATATTGT
gi|5 : gATCGAAATTTATGCATT-TATAAGATCAAAATCA-GCACCTATAGAT----ATAAACACAATTTACGGATTTACT-CACATCGTATTTATTTAAAAAGGAATCCCAC--AACCTAAGT-CAAA-TAT---TTTATAAATTTTACGGACTT-----CACCTAAAATA-GGAAAAAATATTAA-AAGGTGGCAAGCAGTTAACTCTGGAGCAAGACGGTTTTCAAAGGTTTCATTGGAAAAAAATTATT-----------CA-T--------------AATTCACATG-AACAG-AAAAAAAGTTTAT-----AA-ATTTTTGTTT-TGTGATTAAATCTGTATTAGAA------------G
gi|6 : CAAACCATTACGTCCTCTTTATATTGA----------ATCAATATTTCATTTAAAAA-ATATTAATTAAAC-TAAGCATTTTCACGTATAACCTGTCTCCAGATA-TCTCTAAGATGTTATGCACACGA----------GCA--AGAGAAAAAA----AGG---------G---G----GT-GAAAATTGTGGAAA------GTACCTAT----AAAAAATTAAGTGCT---AGATCCCCCC------CCCC-TTCACAAATTCCTGGATCCACCagtctattctgtgtgttactttcagactcgcaaaatgacatctctctctcgcccttgacccaaaaaaatt
gi|7 : aagtgatttttacaactggtaagattccttcgctattaaaaacaattttaatgttacacAAAATTTATTAATTTATAAGCAATT--------------ATTTCATAAGAAACAG--AAAAAAGTTTA------AA-ACTTTTGACATCGC-AT---ATCTG-TTTAGAAAACTCTATTAAGAGCTTT-AATGAAGCCAATTATCAC-TTATTTTTCCCGCACTACAAAATATGCTCT---TTCTATTCATGTTATATGTCACTGTAACATCTCGCCTTGACT-AAGAAAA-TGCACTCCCTACTATGTTAAA
gi|8 : aaagttatgttgtcaAA-TCT---ATTGGAG--TT-ACGGATTTATTTTCA--T---ATA-TTAAACAAT-TT-ATAAGGT-GCAAGTCG-TAA---TGGAGCAAA-CGT-TTTCGGAG--TTTA-TGG-CAAAACTCATT-----------AATT--------------
gi|9 : caggagagtttatagaaaacgaacgtagctaggtttttaattaatttcacgctaatcactggtcacatcaaatATAATATCATCTTTATATTGATGTGTATTGAATTGACATTTCATAAAAAAT-TTAT-AATTAAAC-TAAGCATTTTCACGTAT-----------AGATGGTCCCCA---------------GA----------CCA-----------------------------------------------GTAAAAA------AT-CCT-A----AAGCAATCAAGTTCTACAACACCCCCCC------CCCTCTTCACAAATTCCTGGATCTGCtatgcaaatatatg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCAAGCAAGCACGAGAAATCACAATAAGCTGCATATATACACCAATGTACAATAGTATATATAATGTATAACTGTGATACCCACAACATTTCTTTTTCCAATATGATGGTCCCATAGCATTGGCTTAGATCCGC
Unaligned ( gi|15 ): ATTAAGCATGCGTACACATATCAGTACAACATACATGTAATACTCCGAAATACTCCACCACTACCATCAACACAATACCCATAATGATGGTTCCATAGCACTGGCTTAGATCTGCGCAAAG
Unaligned ( gi|20 ): CCCCCCCTTCAAAAAACCCTGGGTCCGCCCTGATATATATGTA
Alignments
lowQualScore : 11111 77777777777777777777777777777 11 1 333333333 1 1 11 1 111 11 11111 111 11 111 33333333333333 1 11 222222 1 22222 111 222 55555555555555 11 22 222 222 44444 4444444 1 444444 11 333333333333333 8888888888888888 11 444444 44444444444444444444 111 11 111 22222 1 1 2222 3333333333 22222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 111111 111111 111111
lowQualScore : 66666 44444444444444444444444444444 7 88 444 0 9 1 555555555 2 0 0 0 0 1 66 6 33 3 0 8 444 0 3 11 0 66666 6 111 5 5 5 5 5 9 6 55 0 99 8 1 111 1 99999999999999 1 9 22 3 44 888888 0 55555 777 1 666 22222222222222 6 88 44 00 333 333 44444 0000000 3 888888 6 2 0 00 888888888888888 8888888888888888 88 7 000000 6 33333333333333333333 6 444 00 777 33333 0 0 1111 0 1 22 0 1 5555555555 0 6 8 0 5 0 5 77777777777 55555555555555555555555555555555555555555555555555555555555555555555555555555 666666 111111 888 7 666666 5
lowQualScore : ..... ............................. . .. ... . . . ......... . . . . . . .. . .. . . . ... . . .. . ..... . ... . . . . . . . .. . .. . . ... . .............. . . .. . .. ...... . ..... ... . ... .............. . .. .. .. ... ... ..... ....... . ...... . . . .. ............... ................ .. . ...... . .................... . ... .. ... ..... . . .... . . .. . . .......... . . . . . . . ........... ............................................................................. ...... ...... ... . ...... .
lowQualScore : 77777 00000000000000000000000000000 3 33 555 8 8 0 555555555 5 8 8 0 0 0 22 5 88 2 0 0 000 8 8 00 8 77777 7 777 7 7 7 7 7 3 7 88 7 22 0 0 777 0 22222222222222 2 0 55 2 00 222222 0 22222 555 0 000 55555555555555 7 33 33 77 333 333 00000 7777777 3 333333 5 5 8 33 777777777777777 7777777777777777 33 3 000000 7 88888888888888888888 5 555 88 555 88888 0 0 2222 7 0 00 7 0 0000000000 8 0 0 8 7 6 7 11111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 444444 888888 888 6 444444 0
consensus : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
Reference ( family-2057 ) : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
gi|1 : TTCAATACGGCTGATTCAGTACTAAATT-----ATT--------------------T---CCT--TTT-TTCAAAAAAATTATCGAAATCTATGCATTTTATAAGATCAAAATCAAGCACCGATAA-TTAATA--AACACAATTTATGGATT-ACTTCACATTGTATT-ATT-AAAAATT--TCCCAC--AGACTAAGTGAAAA-TCT---CTT-TAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCAAAG--TTCATTGA-AAAAAAATAT---TCATT--------------ACTTCA-ATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-T-TGAT---ATATGAATTAGAAA------------GCTTTGAATGAAGCAAA--ATGAC---ATTTTCCCC---CTACAAAAATTGATTT---CTCT-----ATGCTATA-------GT-ACAT---G--TTGATTCAAAAGAACTGAAGTCTTTATTTTGATAAATTTTTCAACCTTCAACTTAAATTTTGA-TATTTTTCATGACTAATCGTTAAAGACTAGTGCAAAATAATTA--TATTAGT-A-----GTAACACAATTTCACACTAAATTCAACTTTTGAGTACTATA-----TTACTTTCATCCT--TTAG-TTTGTTCGGTAG---AGCAA--G--TGTTGT-ACCT-TAA----CAGCGTGCTATTATATCAACCTAGATAAAAGA
gi|1 : CGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTGATT-AAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGCCCCCA---------------GA----------CCA--A----AAAAA-----GG---------G---G----GTTGGG----GTGAAAAGTACATGTACCT-T----AAAAAATCAAGAGCT---AG----------------------ACAAATTCCTGGATCCGCCTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaaccattatatcctctttatattgaattaacgtttgattaaaaattattaataaaactaagcattttcacgtatagatagcccccagaccaaaaaaagggggttggggtgaaaagtacatgtaccttaaaaaatcaagagctagacaaattcctggatccgcctatg
gi|10 : ttcaatacggctgattcagtactaaattatttccttttttcaaaaaaattatcgaaatctatgcattttataagatcaaaatcaagcaccgataattaataaacacaatttatggattacttcacattgtattattaaaaatttcccacagactaagtgaaaatctctttaatttacggacttcacctatatgaaacaatattaaaggtgcaagcagtaactctggagcaagcgtttcaaagttcattgaaaaaaaatattcattacttcaatgaacagaaaaaaaagtttataaacttttgttattgatatatgaattagaaagctttgaatgaagcaaaatgacattttccccctacaaaaattgatttctctatgctatagtacatgttgattcaaaagaactgaagtctttattttgataaatttttcaaccttcaacttaaattttgatatttttcatgactaatcgttaaagactagtgcaaaataattatattagtagtaacacaatttcacactaaattcaacttttgagtactatattactttcatcctttagtttgttcggtagagcaagtgttgtaccttaacagcgtgctattatatcaacctagataaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATTATATCCTCTTTATATTGA----------ATTAACGTT--GATTAAAAA-T----GATAAAATATAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---GTTGGGTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGA---CCCC------CCCT-TTCACAAATCCCTGGATCCGCCT
gi|11 : GGCTGATTCAAGACTAAAATCACAAATTGAAGAAACGAATA---CATGTAAGCACGTTTTATTCAACAA--TTATCAAAACTTATT-TTTCTGTACGATCAAAATTATACGTCCCTAACT--AT---AACA------GTGGGTTTACTTTATATCATA
gi|12 : tttatgtgattatctatatacatATT-TTA-AAAAATTAATTTCACGAAGAC-AAGT-AAAA-TTTAAAC--ATAA--ATTAATGACCT-----CA--T---ATT-TGAAACAATATT-A-AAGGT-ACAAGGAA-TAA---TGG------------TTTGGAG--TTTATTGA-CAAAACTTGT---TAATT--------------
gi|13 : tcggggtagtttgtcgaaaacgaattagggTTAATAAAAC-TAAGCATTTTCACGCAT-----------AGATAGTCTCTA---------------GA----------ACA--A----AAAAAAAAAGGG---------GTTAG----GTTGGG----GTAAAAA------GTACCT-C----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTAtacaggtat
gi|16 : ATCAATGAAAC-TAAGCATTTTCACATAG-----------ATATAGTCCCCA---------------GA----------CCA--A----AAAAG----GGGTTGGGGGTTG---G----GTTGGG----GTGAAAA------CTACCT-T----AAAAAGTCAAGTGCT---AGACCCC
gi|17 : TTTACTTCACATCGTATT-ATT-AAAAAATACT-CCAC--AGACTAAGT-AAAACTCT---CTTATAA--TTTACGGACTT------ACCC---ATA-TGAAACAATATT-A-AAGGT-GCAATCAG-TA
gi|18 : -----GAGTAC--TAAAATATTACTTTCATCCTGGGTAGTTTCGATCGGTAGAAAAGCAA--C--TGTTGTGTTCTACAA----CA
gi|19 : ttttTACCT-TTAAAAAAAAATCAAGTGCT---AGA---CCTC------CCCT-TTCAAAAAATCCTGGATCCGCCTATGcttagtagcg
gi|2 : CAAAAGAACTGAAATCTTCATTTTGATAAAATCTTCAA--TTCAA--------TTG-----TGTTCATGAC---TC-----------GTGCAAAACCATTA--TACTAGTAATACATGTAGCACAATTTTACACCAAAATCAA----------------------ATTTTTATCCA--CTAG-GTCGATCGGTAG---AGCAA--GTATGCTGT-TCAT-TAA----CAGTGTGGTATTATATCAACCTAGATTTAAGAt
gi|2 : CAAACAATGATATTCTCTATATGTTGA----------ATTAATATTTCATTTAAAAAATTATCAATAGAAC-TAAGCATTTTCACGTAT-----------AAATTGTCTCCA---------------GACCCCCTCCCCCCACCC----CCATA----GGG---------G------------------GTGAGAA------ATATCT-T----AAAAAGTTAAGTGCT---AGACCCCCCCCCCTTTCCCT-TTCACAAATTCCTGGATaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacaccaaacaatgatattctctatatgttgaattaatatttcatttaaaaaattatcaatagaactaagcattttcacgtataaattgtctccagaccccctccccccacccccatagggggtgagaaatatcttaaaaagttaagtgctagacccccccccctttccctttcacaaattcctggat
gi|21 : caaaagaactgaaatcttcattttgataaaatcttcaattcaattgtgttcatgactcgtgcaaaaccattatactagtaatacatgtagcacaattttacaccaaaatcaaatttttatccactaggtcgatcggtagagcaagtatgctgttcattaacagtgtggtattatatcaacctagatttaagaaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacacCT-TTCACAAATTCCTGGATCCGCCTATG
gi|3 : T-----CACCT---CCGGTGAAACAGTATC-A-AAGGT-GCAAACAG-TAATTCTGGAACATG-CG--TGTCAGAG--TTTAT
gi|3 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgTTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAA-AAACAAACAGGAC-TGT---CCTG-TTTATTTAAAAA--TTATCAAAACTTATTCCATGTATAAGATCAAAATTTAGCACCGATAAATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTAggatatttcaatgtggctgattcaatattaaattcatggattaaaaaacaaacaggactgtcctgtttatttaaaaattatcaaaacttattccatgtataagatcaaaatttagcaccgataaattaatgtgaacacaatttgcggacttacttcacatcgta
gi|4 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgtcacctccggtgaaacagtatcaaaggtgcaaacagtaattctggaacatgcgtgtcagagtttatggatatTA-TAAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAACGAG-TG--TTTCAAAG--TTCATTGG-CAAAATTTAT---TCATTTATAAGTATAGATTATTTCA-ATGAA---GAGAAAAAGGTCTATGCATCAATATATGTGTTA-CAAAAT---ATAT---TCAGA-G------------GCTTTGAATGAAGAAAA--ATTGCATTATTTTCCCC---ACACAAAAATTGATTTATATTCTAA---ATGCTACA---CAC-GT-ACAT---------ATTTAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACTTTCAGC-TAAA-TTTAATT-TTGTTCATGATT-A--------------TGCAAAATCATTATCTATAAGTAA------TAACACAATTCTACACCAGATT-AA-----GAGTAC--TA-----TTG-TTTCATCCT--TTAG-CTCGATCGGTAA---AGCAAGTG--TGTTGT-TCCT-TAATGTTCAGTGTGATATTGT
gi|5 : gATCGAAATTTATGCATT-TATAAGATCAAAATCA-GCACCTATAGAT----ATAAACACAATTTACGGATTTACT-CACATCGTATTTATTTAAAAAGGAATCCCAC--AACCTAAGT-CAAA-TAT---TTTATAAATTTTACGGACTT-----CACCTAAAATA-GGAAAAAATATTAA-AAGGTGGCAAGCAGTTAACTCTGGAGCAAGACGGTTTTCAAAGGTTTCATTGGAAAAAAATTAT---TCA-T--------------AATTCACATGAA-CAG-AAAAAAAGTTTAT-----AA-ATTTTTGTTT-TGTGATTAAATCTGTATTAGAAG------------
gi|6 : CAAACCATTACGTCCTCTTTATATTGA----------ATCAATATTTCATTTAAAAA-ATATTAATTAAAC-TAAGCATTTTCACGTATAACCTGTCTCCAGATA-TCTCTAAGATGTTATGCACACGA----------GCA--AGAGAAAAAA----AGG---------G---G----GT-GAAAATTGTGGAAA------GTACCTAT----AAAAAATTAAGTGCT---AGATCCCCCC------CCCC-TTCACAAATTCCTGGATCCACCagtctattctgtgtgttactttcagactcgcaaaatgacatctctctctcgcccttgacccaaaaaaatt
gi|7 : aagtgatttttacaactggtaagattccttcgctattaaaaacaattttaatgttacacAATTTATAAGCAATT--------------ATTTCATAAGAAACAGAAAAAA--GTTTA------AA-ACTTTTGACATCGC-AT---ATCTG-TTTAGAAAACTCTATTAAGAGCTTT-AATGAAGCCAATTATCAC-TTATTTTTCCCGCACTACAAAATATGCTCT---TTCT-ATTCATGTTATATGTCACTGTAACATCTCGCCTTGACT-AAGAAAA-TGCACTCCCTACTATGTTAAA
gi|8 : aaagttatgttgtcaaaaatttattAA-TCT---ATTGGAG--TT-ACGGATTTATTTTCA--T---ATA-TTAAACAAT-TT-ATAAGGT-GCAAGTCG-TAA---TGGAGCAAA-CGT-TTTCGGAG--TTTA-TGG-CAAAACTCAT---TAATT--------------
gi|9 : caggagagtttatagaaaacgaacgtagctaggtttttaattaatttcacgctaatcactggtcacatcaaatATAATATCATCTTTATATTGATGTGTATTGAATTGACATTTCATAAAAAAT-TTAT-AATTAAAC-TAAGCATTTTCACGTAT-----------AGATGGTCCCCA---------------GA----------CCA-----------------------------------------------GTAAAAA------AT-CCT-A----AAGCAATCAAGTTCTACAACACCCCCCC------CCCTCTTCACAAATTCCTGGATCTGCtatgcaaatatatg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCAAGCAAGCACGAGAAATCACAATAAGCTGCATATATACACCAATGTACAATAGTATATATAATGTATAACTGTGATACCCACAACATTTCTTTTTCCAATATGATGGTCCCATAGCATTGGCTTAGATCCGC
Unaligned ( gi|15 ): ATTAAGCATGCGTACACATATCAGTACAACATACATGTAATACTCCGAAATACTCCACCACTACCATCAACACAATACCCATAATGATGGTTCCATAGCACTGGCTTAGATCTGCGCAAAG
Unaligned ( gi|20 ): CCCCCCCTTCAAAAAACCCTGGGTCCGCCCTGATATATATGTA
Alignments
lowQualScore : 11111 77777777777777777777777777777 11 1 333333333 1 1 11 1 111 11 11111 111 11 111 33333333333333 1 11 222222 1 22222 111 222 55555555555555 11 22 222 222 44444 4444444 1 444444 11 333333333333333 8888888888888888 11 444444 44444444444444444444 111 11 111 22222 1 1 2222 3333333333 22222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 111111 111111 111111
lowQualScore : 66666 44444444444444444444444444444 7 88 444 0 9 1 555555555 2 0 0 0 0 1 66 6 33 3 0 8 444 0 3 11 0 66666 6 111 5 5 5 5 5 9 6 55 0 99 8 1 111 1 99999999999999 1 9 22 3 44 888888 0 55555 777 1 666 22222222222222 6 88 44 00 333 333 44444 0000000 3 888888 6 2 0 00 888888888888888 8888888888888888 88 7 000000 6 33333333333333333333 6 444 00 777 33333 0 0 1111 0 1 22 0 1 5555555555 0 6 8 0 5 0 5 77777777777 55555555555555555555555555555555555555555555555555555555555555555555555555555 666666 111111 888 7 666666 5
lowQualScore : ..... ............................. . .. ... . . . ......... . . . . . . .. . .. . . . ... . . .. . ..... . ... . . . . . . . .. . .. . . ... . .............. . . .. . .. ...... . ..... ... . ... .............. . .. .. .. ... ... ..... ....... . ...... . . . .. ............... ................ .. . ...... . .................... . ... .. ... ..... . . .... . . .. . . .......... . . . . . . . ........... ............................................................................. ...... ...... ... . ...... .
lowQualScore : 77777 00000000000000000000000000000 3 33 555 8 8 0 555555555 5 8 8 0 0 0 22 5 88 2 0 0 000 8 8 00 8 77777 7 777 7 7 7 7 7 3 7 88 7 22 0 0 777 0 22222222222222 2 0 55 2 00 222222 0 22222 555 0 000 55555555555555 7 33 33 77 333 333 00000 7777777 3 333333 5 5 8 33 777777777777777 7777777777777777 33 3 000000 7 88888888888888888888 5 555 88 555 88888 0 0 2222 7 0 00 7 0 0000000000 8 0 0 8 7 6 7 11111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 444444 888888 888 6 444444 0
consensus : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
Reference ( family-2057 ) : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
gi|1 : TTCAATACGGCTGATTCAGTACTAAATT-----ATT--------------------T---CCT--TTT-TTCAAAAAAATTATCGAAATCTATGCATTTTATAAGATCAAAATCAAGCACCGATAA-TTAATA--AACACAATTTATGGATT-ACTTCACATTGTATT-ATT-AAAAATT--TCCCAC--AGACTAAGTGAAAA-TCT---CTT-TAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCAAAG--TTCATTGA-AAAAAAATAT---TCATT--------------ACTTCA-ATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-T-TGAT---ATATGAATTAGAAA------------GCTTTGAATGAAGCAAA--ATGAC---ATTTTCCCC---CTACAAAAATTGATTT---CTCT-----ATGCTATA-------GT-ACAT---G--TTGATTCAAAAGAACTGAAGTCTTTATTTTGATAAATTTTTCAACCTTCAACTTAAATTTTGA-TATTTTTCATGACTAATCGTTAAAGACTAGTGCAAAATAATTA--TATTAGT-A-----GTAACACAATTTCACACTAAATTCAACTTTTGAGTACTATA-----TTACTTTCATCCT--TTAG-TTTGTTCGGTAG---AGCAA--G--TGTTGT-ACCT-TAA----CAGCGTGCTATTATATCAACCTAGATAAAAGA
gi|1 : CGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTGATT-AAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGCCCCCA---------------GA----------CCA--A----AAAAA-----GG---------G---G----GTTGGG----GTGAAAAGTACATGTACCT-T----AAAAAATCAAGAGCT---AG----------------------ACAAATTCCTGGATCCGCCTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaaccattatatcctctttatattgaattaacgtttgattaaaaattattaataaaactaagcattttcacgtatagatagcccccagaccaaaaaaagggggttggggtgaaaagtacatgtaccttaaaaaatcaagagctagacaaattcctggatccgcctatg
gi|10 : ttcaatacggctgattcagtactaaattatttccttttttcaaaaaaattatcgaaatctatgcattttataagatcaaaatcaagcaccgataattaataaacacaatttatggattacttcacattgtattattaaaaatttcccacagactaagtgaaaatctctttaatttacggacttcacctatatgaaacaatattaaaggtgcaagcagtaactctggagcaagcgtttcaaagttcattgaaaaaaaatattcattacttcaatgaacagaaaaaaaagtttataaacttttgttattgatatatgaattagaaagctttgaatgaagcaaaatgacattttccccctacaaaaattgatttctctatgctatagtacatgttgattcaaaagaactgaagtctttattttgataaatttttcaaccttcaacttaaattttgatatttttcatgactaatcgttaaagactagtgcaaaataattatattagtagtaacacaatttcacactaaattcaacttttgagtactatattactttcatcctttagtttgttcggtagagcaagtgttgtaccttaacagcgtgctattatatcaacctagataaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATTATATCCTCTTTATATTGA----------ATTAACGTT--GATTAAAAA-T----GATAAAATATAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---GTTGGGTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGA---CCCC------CCCT-TTCACAAATCCCTGGATCCGCCT
gi|11 : GGCTGATTCAAGACTAAAATCACAAATTGAAGAAACGAATA---CATGTAAGCACGTTTTATTCAACAA--TTATCAAAACTTATT-TTTCTGTACGATCAAAATTATACGTCCCTAACT--AT---AACA------GTGGGTTTACTTTATATCATA
gi|12 : tttatgtgattatctatatacatATT-TTA-AAAAATTAATTTCACGAAGAC-AAGT-AAAA-TTTAAAC--ATAA--ATTAATGACCT-----CA--T---ATT-TGAAACAATATT-A-AAGGT-ACAAGGAA-TAA---TGG------------TTTGGAG--TTTATTGA-CAAAACTTGT---TAATT--------------
gi|13 : tcggggtagtttgtcgaaaacgaattagggTTAATAAAAC-TAAGCATTTTCACGCAT-----------AGATAGTCTCTA---------------GA----------ACA--A----AAAAAAAAAGGG---------GTTAG----GTTGGG----GTAAAAA------GTACCT-C----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTAtacaggtat
gi|16 : ATCAATGAAAC-TAAGCATTTTCACATAG-----------ATATAGTCCCCA---------------GA----------CCA--A----AAAAG----GGGTTGGGGGTTG---G----GTTGGG----GTGAAAA------CTACCT-T----AAAAAGTCAAGTGCT---AGACCCC
gi|17 : TTTACTTCACATCGTATT-ATT-AAAAAATACT-CCAC--AGACTAAGT-AAAACTCT---CTTATAA--TTTACGGACTT------ACCC---ATA-TGAAACAATATT-A-AAGGT-GCAATCAG-TA
gi|18 : -----GAGTAC--TAAAATATTACTTTCATCCTGGGTAGTTTCGATCGGTAGAAAAGCAA--C--TGTTGTGTTCTACAA----CA
gi|19 : ttttTACCT-TTAAAAAAAAATCAAGTGCT---AGA---CCTC------CCCT-TTCAAAAAATCCTGGATCCGCCTATGcttagtagcg
gi|2 : CAAAAGAACTGAAATCTTCATTTTGATAAAATCTTCAA--TTCAA--------TTG-----TGTTCATGAC---TC-----------GTGCAAAACCATTA--TACTAGTAATACATGTAGCACAATTTTACACCAAAATCAA----------------------ATTTTTATCCA--CTAG-GTCGATCGGTAG---AGCAA--GTATGCTGT-TCAT-TAA----CAGTGTGGTATTATATCAACCTAGATTTAAGAt
gi|2 : CAAACAATGATATTCTCTATATGTTGA----------ATTAATATTTCATTTAAAAAATTATCAATAGAAC-TAAGCATTTTCACGTAT-----------AAATTGTCTCCA---------------GACCCCCTCCCCCCACCC----CCATA----GGG---------G------------------GTGAGAA------ATATCT-T----AAAAAGTTAAGTGCT---AGACCCCCCCCCCTTTCCCT-TTCACAAATTCCTGGATaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacaccaaacaatgatattctctatatgttgaattaatatttcatttaaaaaattatcaatagaactaagcattttcacgtataaattgtctccagaccccctccccccacccccatagggggtgagaaatatcttaaaaagttaagtgctagacccccccccctttccctttcacaaattcctggat
gi|21 : caaaagaactgaaatcttcattttgataaaatcttcaattcaattgtgttcatgactcgtgcaaaaccattatactagtaatacatgtagcacaattttacaccaaaatcaaatttttatccactaggtcgatcggtagagcaagtatgctgttcattaacagtgtggtattatatcaacctagatttaagaaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacacCT-TTCACAAATTCCTGGATCCGCCTATG
gi|3 : T-----CACCT---CCGGTGAAACAGTATC-A-AAGGT-GCAAACAG-TAATTCTGGAACATG-CG--TGTCAGAG--TTTAT
gi|3 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgTTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAA-AAACAAACAGGAC-TGT---CCTG-TTTATTTAAAAA--TTATCAAAACTTATTCCATGTATAAGATCAAAATTTAGCACCGATAAATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTAggatatttcaatgtggctgattcaatattaaattcatggattaaaaaacaaacaggactgtcctgtttatttaaaaattatcaaaacttattccatgtataagatcaaaatttagcaccgataaattaatgtgaacacaatttgcggacttacttcacatcgta
gi|4 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgtcacctccggtgaaacagtatcaaaggtgcaaacagtaattctggaacatgcgtgtcagagtttatggatatTA-TAAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAACGAG-TG--TTTCAAAG--TTCATTGG-CAAAATTTAT---TCATTTATAAGTATAGATTATTTCA-ATGAA---GAGAAAAAGGTCTATGCATCAATATATGTGTTA-CAAAAT---ATAT---TCAGA-G------------GCTTTGAATGAAGAAAA--ATTGCATTATTTTCCCC---ACACAAAAATTGATTTATATTCTAA---ATGCTACA---CAC-GT-ACAT---------ATTTAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACTTTCAGC-TAAA-TTTAATT-TTGTTCATGATT-A--------------TGCAAAATCATTATCTATAAGTAA------TAACACAATTCTACACCAGATT-AA-----GAGTAC--TA-----TTG-TTTCATCCT--TTAG-CTCGATCGGTAA---AGCAAGTG--TGTTGT-TCCT-TAATGTTCAGTGTGATATTGT
gi|5 : gATCGAAATTTATGCATT-TATAAGATCAAAATCA-GCACCTATAGAT----ATAAACACAATTTACGGATTTACT-CACATCGTATTTATTTAAAAAGGAATCCCAC--AACCTAAGT-CAAA-TAT---TTTATAAATTTTACGGACTT-----CACCTAAAATA-GGAAAAAATATTAA-AAGGTGGCAAGCAGTTAACTCTGGAGCAAGACGGTTTTCAAAGGTTTCATTGGAAAAAAATTAT---TCA-T--------------AATTCACATGAA-CAG-AAAAAAAGTTTAT-----AA-ATTTTTGTTT-TGTGATTAAATCTGTATTAGAAG------------
gi|6 : CAAACCATTACGTCCTCTTTATATTGA----------ATCAATATTTCATTTAAAAA-ATATTAATTAAAC-TAAGCATTTTCACGTATAACCTGTCTCCAGATA-TCTCTAAGATGTTATGCACACGA----------GCA--AGAGAAAAAA----AGG---------G---G----GT-GAAAATTGTGGAAA------GTACCTAT----AAAAAATTAAGTGCT---AGATCCCCCC------CCCC-TTCACAAATTCCTGGATCCACCagtctattctgtgtgttactttcagactcgcaaaatgacatctctctctcgcccttgacccaaaaaaatt
gi|7 : aagtgatttttacaactggtaagattccttcgctattaaaaacaattttaatgttacacAATTTATAAGCAATT--------------ATTTCATAAGAAACAGAAAAAA--GTTTA------AA-ACTTTTGACATCGC-AT---ATCTG-TTTAGAAAACTCTATTAAGAGCTTT-AATGAAGCCAATTATCAC-TTATTTTTCCCGCACTACAAAATATGCTCT---TTCT-ATTCATGTTATATGTCACTGTAACATCTCGCCTTGACT-AAGAAAA-TGCACTCCCTACTATGTTAAA
gi|8 : aaagttatgttgtcaaaaatttattAA-TCT---ATTGGAG--TT-ACGGATTTATTTTCA--T---ATA-TTAAACAAT-TT-ATAAGGT-GCAAGTCG-TAA---TGGAGCAAA-CGT-TTTCGGAG--TTTA-TGG-CAAAACTCAT---TAATT--------------
gi|9 : caggagagtttatagaaaacgaacgtagctaggtttttaattaatttcacgctaatcactggtcacatcaaatATAATATCATCTTTATATTGATGTGTATTGAATTGACATTTCATAAAAAAT-TTAT-AATTAAAC-TAAGCATTTTCACGTAT-----------AGATGGTCCCCA---------------GA----------CCA-----------------------------------------------GTAAAAA------AT-CCT-A----AAGCAATCAAGTTCTACAACACCCCCCC------CCCTCTTCACAAATTCCTGGATCTGCtatgcaaatatatg
blockSeqs : CACAA GAAGAAACGAATACATGTAAGCACGT A . TCC C T C ATTAATGTG C T T T AA T GA T . C AAA A AT ATTTT C AAA G A T G T T A GT GT A C AAG A TATAAGTATAGATT T C AC A AG TGCATC T CAAA TAA A GTA AAACTCTATTAAGA G TT TG AT GCA ATA ATTC TGTCACT A CTCGCC C C CT CTAAATTTAATT TC TC A TACATG C GAGTACTAAAATA C GGG TT AAA GTA G A TGTT G TT T TGTGTATTGA T A T A AACCTGTCTCC AGATGTTATGCACACGAGCAAGAGAAAAAAAGGGGGTGAAAATT . TTAAA ACA C CCCTTT C
blockSeqs : CATGG AAAAAACAAACAGGACTGTCCTG A . GCA G A G ATATA C . . A AC C . T . . . A . . C . . . . . . C . T . . T . C . A T C A AA T . TGTG . C GT AG . . CA T . . AA CAC . . T C . TTG TA . A . . GAGTACTA T C G . GTG . . . A G . T . C . . GACCAAAAAAGGGGTTGGGGGTTGGGTTGGG . AT . C . .
blockSeqs : TT . . T CTAT . . . G AA . . . . . . A . . C . . . . . . C . . . . A . C . T . . . . . . TCGC . C . G . . . . T C . C . . . T . T . C . . GAACAAAAAAAAAAAGGGGTTAGGTTGGG . T . C . .
blockSeqs : . . G . . . . . . . . . . . . . . T . A . A . A . T . . GACCCCCTCCCCCCACCCCCATAGGGG . C . T . .
blockSeqs : . . . . . . . . . . . . C . A . . . . GACCAAAAAAAGGGGGTTGGGTTGGG . T . C . .
blockSeqs : . . . . . . . . GACCA . T . . . .
blockSeqs : A . . .
blockSeqCons : ******
originalCons : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
finalCons : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCAAGCAAGCACGAGAAATCACAATAAGCTGCATATATACACCAATGTACAATAGTATATATAATGTATAACTGTGATACCCACAACATTTCTTTTTCCAATATGATGGTCCCATAGCATTGGCTTAGATCCGC
Unaligned ( gi|15 ): ATTAAGCATGCGTACACATATCAGTACAACATACATGTAATACTCCGAAATACTCCACCACTACCATCAACACAATACCCATAATGATGGTTCCATAGCACTGGCTTAGATCTGCGCAAAG
Unaligned ( gi|20 ): CCCCCCCTTCAAAAAACCCTGGGTCCGCCCTGATATATATGTA
Alignments
lowQualScore : 11111 77777777777777777777777777777 11 1 333333333 1 1 11 1 111 11 11111 111 11 111 33333333333333 1 11 222222 1 22222 111 222 55555555555555 11 22 222 222 44444 4444444 1 444444 11 333333333333333 8888888888888888 11 444444 44444444444444444444 111 11 111 22222 1 1 2222 3333333333 22222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 111111 111111 111111
lowQualScore : 66666 44444444444444444444444444444 7 88 444 0 9 1 555555555 2 0 0 0 0 1 66 6 33 3 0 8 444 0 3 11 0 66666 6 111 5 5 5 5 5 9 6 55 0 99 8 1 111 1 99999999999999 1 9 22 3 44 888888 0 55555 777 1 666 22222222222222 6 88 44 00 333 333 44444 0000000 3 888888 6 2 0 00 888888888888888 8888888888888888 88 7 000000 6 33333333333333333333 6 444 00 777 33333 0 0 1111 0 1 22 0 1 5555555555 0 6 8 0 5 0 5 77777777777 55555555555555555555555555555555555555555555555555555555555555555555555555555 666666 111111 888 7 666666 5
lowQualScore : ..... ............................. . .. ... . . . ......... . . . . . . .. . .. . . . ... . . .. . ..... . ... . . . . . . . .. . .. . . ... . .............. . . .. . .. ...... . ..... ... . ... .............. . .. .. .. ... ... ..... ....... . ...... . . . .. ............... ................ .. . ...... . .................... . ... .. ... ..... . . .... . . .. . . .......... . . . . . . . ........... ............................................................................. ...... ...... ... . ...... .
lowQualScore : 77777 00000000000000000000000000000 3 33 555 8 8 0 555555555 5 8 8 0 0 0 22 5 88 2 0 0 000 8 8 00 8 77777 7 777 7 7 7 7 7 3 7 88 7 22 0 0 777 0 22222222222222 2 0 55 2 00 222222 0 22222 555 0 000 55555555555555 7 33 33 77 333 333 00000 7777777 3 333333 5 5 8 33 777777777777777 7777777777777777 33 3 000000 7 88888888888888888888 5 555 88 555 88888 0 0 2222 7 0 00 7 0 0000000000 8 0 0 8 7 6 7 11111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 444444 888888 888 6 444444 0
consensus : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
Reference ( family-2057 ) : TTCAATGCGGCTGATTCAATACTAAATTCACGGATTGAA-AAACGAACA---C-TGT---CCTG-TTTATTCAAAAA--TTATCGAAACTTATNCNTTNTATAAGATCAAAATCAAGCACCNATAAATTAATATGAACACAATTTGCGGATTTACTTCACATCGTATT-ATT-AAAAANTAATCCCAC--AGACTAAGT-AAAA-TCT---CTTATAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCGGAG--TTCATTGG-CAAAANTTAT---TNATT--------------ATTTCACATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-CGCGAT---ATNTG-ATTAGAAG------------GCTTTGAATGAAGCAAA--ATCGC-TTATTTTCCCC---CTACAAAAATTGATTT---TTCT-A---ATGCTATA---CAC-GT-ACAT---G--TTGATTCAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACCTTCAAC-TAAA-TTTGA-T-TTGTTCATGACT-ATC-----------GTGCAAAATCATTA--TATTAGTAA-----GTAACACAATTTTACACCAAATTCAA-----GAGTAC--TA-----TTACTTTCATCCT--TTAG-TTCGATCGGTAG---AGCAA--G--TGTTGT-TCCT-TAA----CAGCGTGNTATTATATCAACCTAGATNNAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTCATTTAAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---G----GTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTATG
gi|1 : TTCAATACGGCTGATTCAGTACTAAATT-----ATT--------------------T---CCT--TTT-TTCAAAAAAATTATCGAAATCTATGCATTTTATAAGATCAAAATCAAGCACCGATAA-TTAATA--AACACAATTTATGGATT-ACTTCACATTGTATT-ATT-AAAAATT--TCCCAC--AGACTAAGTGAAAA-TCT---CTT-TAA--TTTACGGACTT-----CACCT---ATA-TGAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAGCAAG-CG--TTTCAAAG--TTCATTGA-AAAAAAATAT---TCATT--------------ACTTCA-ATGAA-CAGAAAAAAAAGTTTAT-----AA-ACTTTTGTTA-T-TGAT---ATATGAATTAGAAA------------GCTTTGAATGAAGCAAA--ATGAC---ATTTTCCCC---CTACAAAAATTGATTT---CTCT-----ATGCTATA-------GT-ACAT---G--TTGATTCAAAAGAACTGAAGTCTTTATTTTGATAAATTTTTCAACCTTCAACTTAAATTTTGA-TATTTTTCATGACTAATCGTTAAAGACTAGTGCAAAATAATTA--TATTAGT-A-----GTAACACAATTTCACACTAAATTCAACTTTTGAGTACTATA-----TTACTTTCATCCT--TTAG-TTTGTTCGGTAG---AGCAA--G--TGTTGT-ACCT-TAA----CAGCGTGCTATTATATCAACCTAGATAAAAGA
gi|1 : CGAACCATTATATCCTCTTTATATTGA----------ATTAACGTTTGATT-AAAAA-TTATTAATAAAAC-TAAGCATTTTCACGTAT-----------AGATAGCCCCCA---------------GA----------CCA--A----AAAAA-----GG---------G---G----GTTGGG----GTGAAAAGTACATGTACCT-T----AAAAAATCAAGAGCT---AG----------------------ACAAATTCCTGGATCCGCCTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaaccattatatcctctttatattgaattaacgtttgattaaaaattattaataaaactaagcattttcacgtatagatagcccccagaccaaaaaaagggggttggggtgaaaagtacatgtaccttaaaaaatcaagagctagacaaattcctggatccgcctatg
gi|10 : ttcaatacggctgattcagtactaaattatttccttttttcaaaaaaattatcgaaatctatgcattttataagatcaaaatcaagcaccgataattaataaacacaatttatggattacttcacattgtattattaaaaatttcccacagactaagtgaaaatctctttaatttacggacttcacctatatgaaacaatattaaaggtgcaagcagtaactctggagcaagcgtttcaaagttcattgaaaaaaaatattcattacttcaatgaacagaaaaaaaagtttataaacttttgttattgatatatgaattagaaagctttgaatgaagcaaaatgacattttccccctacaaaaattgatttctctatgctatagtacatgttgattcaaaagaactgaagtctttattttgataaatttttcaaccttcaacttaaattttgatatttttcatgactaatcgttaaagactagtgcaaaataattatattagtagtaacacaatttcacactaaattcaacttttgagtactatattactttcatcctttagtttgttcggtagagcaagtgttgtaccttaacagcgtgctattatatcaacctagataaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATTATATCCTCTTTATATTGA----------ATTAACGTT--GATTAAAAA-T----GATAAAATATAAGCATTTTCACGTAT-----------AGATAGTCCCCA---------------GA----------CCA--A----AAAAA----GGG---------G---GTTGGGTTGGG----GTGAAAA------GTACCT-T----AAAAAATCAAGTGCT---AGA---CCCC------CCCT-TTCACAAATCCCTGGATCCGCCT
gi|11 : GGCTGATTCAAGACTAAAATCACAAATTGAAGAAACGAATA---CATGTAAGCACGTTTTATTCAACAA--TTATCAAAACTTATT-TTTCTGTACGATCAAAATTATACGTCCCTAACT--AT---AACA------GTGGGTTTACTTTATATCATA
gi|12 : tttatgtgattatctatatacatATT-TTA-AAAAATTAATTTCACGAAGAC-AAGT-AAAA-TTTAAAC--ATAA--ATTAATGACCT-----CA--T---ATT-TGAAACAATATT-A-AAGGT-ACAAGGAA-TAA---TGG------------TTTGGAG--TTTATTGA-CAAAACTTGT---TAATT--------------
gi|13 : tcggggtagtttgtcgaaaacgaattagggTTAATAAAAC-TAAGCATTTTCACGCAT-----------AGATAGTCTCTA---------------GA----------ACA--A----AAAAAAAAAGGG---------GTTAG----GTTGGG----GTAAAAA------GTACCT-C----AAAAAATCAAGTGCT---AGACCCCCCC------CCCT-TTCACAAATTCCTGGATCCGCCTAtacaggtat
gi|16 : ATCAATGAAAC-TAAGCATTTTCACATAG-----------ATATAGTCCCCA---------------GA----------CCA--A----AAAAG----GGGTTGGGGGTTG---G----GTTGGG----GTGAAAA------CTACCT-T----AAAAAGTCAAGTGCT---AGACCCC
gi|17 : TTTACTTCACATCGTATT-ATT-AAAAAATACT-CCAC--AGACTAAGT-AAAACTCT---CTTATAA--TTTACGGACTT------ACCC---ATA-TGAAACAATATT-A-AAGGT-GCAATCAG-TA
gi|18 : -----GAGTAC--TAAAATATTACTTTCATCCTGGGTAGTTTCGATCGGTAGAAAAGCAA--C--TGTTGTGTTCTACAA----CA
gi|19 : ttttTACCT-TTAAAAAAAAATCAAGTGCT---AGA---CCTC------CCCT-TTCAAAAAATCCTGGATCCGCCTATGcttagtagcg
gi|2 : CAAAAGAACTGAAATCTTCATTTTGATAAAATCTTCAA--TTCAA--------TTG-----TGTTCATGAC---TC-----------GTGCAAAACCATTA--TACTAGTAATACATGTAGCACAATTTTACACCAAAATCAA----------------------ATTTTTATCCA--CTAG-GTCGATCGGTAG---AGCAA--GTATGCTGT-TCAT-TAA----CAGTGTGGTATTATATCAACCTAGATTTAAGAt
gi|2 : CAAACAATGATATTCTCTATATGTTGA----------ATTAATATTTCATTTAAAAAATTATCAATAGAAC-TAAGCATTTTCACGTAT-----------AAATTGTCTCCA---------------GACCCCCTCCCCCCACCC----CCATA----GGG---------G------------------GTGAGAA------ATATCT-T----AAAAAGTTAAGTGCT---AGACCCCCCCCCCTTTCCCT-TTCACAAATTCCTGGATaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacaccaaacaatgatattctctatatgttgaattaatatttcatttaaaaaattatcaatagaactaagcattttcacgtataaattgtctccagaccccctccccccacccccatagggggtgagaaatatcttaaaaagttaagtgctagacccccccccctttccctttcacaaattcctggat
gi|21 : caaaagaactgaaatcttcattttgataaaatcttcaattcaattgtgttcatgactcgtgcaaaaccattatactagtaatacatgtagcacaattttacaccaaaatcaaatttttatccactaggtcgatcggtagagcaagtatgctgttcattaacagtgtggtattatatcaacctagatttaagaaaactgaaaaagatattgctgttatcaaatattgctgatgctgacgtcggagatgatgatgtctacaaatatcgccatgtactatcgatatattctaaataatttttacaactggtaaaattcctattttaatgtaacacCT-TTCACAAATTCCTGGATCCGCCTATG
gi|3 : T-----CACCT---CCGGTGAAACAGTATC-A-AAGGT-GCAAACAG-TAATTCTGGAACATG-CG--TGTCAGAG--TTTAT
gi|3 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgTTCAATGTGGCTGATTCAATATTAAATTCATGGATTAAA-AAACAAACAGGAC-TGT---CCTG-TTTATTTAAAAA--TTATCAAAACTTATTCCATGTATAAGATCAAAATTTAGCACCGATAAATTAATGTGAACACAATTTGCGGACTTACTTCACATCGTAggatatttcaatgtggctgattcaatattaaattcatggattaaaaaacaaacaggactgtcctgtttatttaaaaattatcaaaacttattccatgtataagatcaaaatttagcaccgataaattaatgtgaacacaatttgcggacttacttcacatcgta
gi|4 : catctttgttcgtcagttgggacagtgatatatcgaactagaagaacgcccatgcaagcgtgggagatcaccttgaacatgcgtacatgtacatgtacatatatatagctgcaatacctcaccacaaccacatttcgttttcaatatgataactccatagcactgttgcagatctgcgcatagtgtttcctccagttgtcacctccggtgaaacagtatcaaaggtgcaaacagtaattctggaacatgcgtgtcagagtttatggatatTA-TAAAACAATATT-A-AAGGT-GCAAGCAG-TAACTCTGGAACGAG-TG--TTTCAAAG--TTCATTGG-CAAAATTTAT---TCATTTATAAGTATAGATTATTTCA-ATGAA---GAGAAAAAGGTCTATGCATCAATATATGTGTTA-CAAAAT---ATAT---TCAGA-G------------GCTTTGAATGAAGAAAA--ATTGCATTATTTTCCCC---ACACAAAAATTGATTTATATTCTAA---ATGCTACA---CAC-GT-ACAT---------ATTTAAAAGAACTGAAATCTTTATTTTGATAAAATCTTCAACTTTCAGC-TAAA-TTTAATT-TTGTTCATGATT-A--------------TGCAAAATCATTATCTATAAGTAA------TAACACAATTCTACACCAGATT-AA-----GAGTAC--TA-----TTG-TTTCATCCT--TTAG-CTCGATCGGTAA---AGCAAGTG--TGTTGT-TCCT-TAATGTTCAGTGTGATATTGT
gi|5 : gATCGAAATTTATGCATT-TATAAGATCAAAATCA-GCACCTATAGAT----ATAAACACAATTTACGGATTTACT-CACATCGTATTTATTTAAAAAGGAATCCCAC--AACCTAAGT-CAAA-TAT---TTTATAAATTTTACGGACTT-----CACCTAAAATA-GGAAAAAATATTAA-AAGGTGGCAAGCAGTTAACTCTGGAGCAAGACGGTTTTCAAAGGTTTCATTGGAAAAAAATTAT---TCA-T--------------AATTCACATGAA-CAG-AAAAAAAGTTTAT-----AA-ATTTTTGTTT-TGTGATTAAATCTGTATTAGAAG------------
gi|6 : CAAACCATTACGTCCTCTTTATATTGA----------ATCAATATTTCATTTAAAAA-ATATTAATTAAAC-TAAGCATTTTCACGTATAACCTGTCTCCAGATA-TCTCTAAGATGTTATGCACACGA----------GCA--AGAGAAAAAA----AGG---------G---G----GT-GAAAATTGTGGAAA------GTACCTAT----AAAAAATTAAGTGCT---AGATCCCCCC------CCCC-TTCACAAATTCCTGGATCCACCagtctattctgtgtgttactttcagactcgcaaaatgacatctctctctcgcccttgacccaaaaaaatt
gi|7 : aagtgatttttacaactggtaagattccttcgctattaaaaacaattttaatgttacacAATTTATAAGCAATT--------------ATTTCATAAGAAACAGAAAAAA--GTTTA------AA-ACTTTTGACATCGC-AT---ATCTG-TTTAGAAAACTCTATTAAGAGCTTT-AATGAAGCCAATTATCAC-TTATTTTTCCCGCACTACAAAATATGCTCT---TTCT-ATTCATGTTATATGTCACTGTAACATCTCGCCTTGACT-AAGAAAA-TGCACTCCCTACTATGTTAAA
gi|8 : aaagttatgttgtcaaaaatttattAA-TCT---ATTGGAG--TT-ACGGATTTATTTTCA--T---ATA-TTAAACAAT-TT-ATAAGGT-GCAAGTCG-TAA---TGGAGCAAA-CGT-TTTCGGAG--TTTA-TGG-CAAAACTCAT---TAATT--------------
gi|9 : caggagagtttatagaaaacgaacgtagctaggtttttaattaatttcacgctaatcactggtcacatcaaatATAATATCATCTTTATATTGATGTGTATTGAATTGACATTTCATAAAAAAT-TTAT-AATTAAAC-TAAGCATTTTCACGTAT-----------AGATGGTCCCCA---------------GA----------CCA-----------------------------------------------GTAAAAA------AT-CCT-A----AAGCAATCAAGTTCTACAACACCCCCCC------CCCTCTTCACAAATTCCTGGATCTGCtatgcaaatatatg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCAAGCAAGCACGAGAAATCACAATAAGCTGCATATATACACCAATGTACAATAGTATATATAATGTATAACTGTGATACCCACAACATTTCTTTTTCCAATATGATGGTCCCATAGCATTGGCTTAGATCCGC
Unaligned ( gi|15 ): ATTAAGCATGCGTACACATATCAGTACAACATACATGTAATACTCCGAAATACTCCACCACTACCATCAACACAATACCCATAATGATGGTTCCATAGCACTGGCTTAGATCTGCGCAAAG
Unaligned ( gi|20 ): CCCCCCCTTCAAAAAACCCTGGGTCCGCCCTGATATATATGTA