lowQualScore : 11111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 555555555 1 22 1 88888888 888888888 77777777777777777777777777777777777777777777 888888888888888888 11 33333333 2 1 111 1 1 6666666666 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111 111111 1111 1111111 33333333 111 444444444444 55555555555555555555555555 333333 1111111 3
lowQualScore : 0 7 666666666 6 3 7 4 6 77 88 7 11111111 2 6 444444444 77777777777777777777777777777777777777777777 6 0 999999999999999999 33 11111111 9 9 2 0 0 444 0 3 5 4 0000000000 6 6 2 6 7777 666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 88888 1 666666 2222 7777777 22222222 000 000000000000 1 77 66666666666666666666666666 000000 6666666 1 6
lowQualScore : . . ......... . . . . . .. .. . ........ . . ......... ............................................ . . .................. .. ........ . . . . . ... . . . . .......... . . . . .... ... ........................................................................................................................................................................................................... ..... . ...... .... ....... ........ ... ............ . .. .......................... ...... ....... . .
lowQualScore : 7 3 333333333 0 0 0 0 0 55 55 0 00000000 5 0 222222222 22222222222222222222222222222222222222222222 0 2 000000000000000000 22 00000000 2 2 0 0 0 888 0 2 0 0 0000000000 0 0 0 7 1111 333 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 7 444444 1111 4444444 44444444 000 777777777777 4 99 00000000000000000000000000 333333 0000000 7 7
consensus : ATCAAAATACATTCTAAAAAT-------GTTATTGCGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGNCGATCTNGGCTAATATCGCNATACTATGGTGTAATCTATTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCAACTCATCGTAC--------------AATNATCCTAGATTTAANCGAACCA-CCGATGTTGATAAATTTGAATGATGAA---C----A-------AG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCNNTAAAA-CTGAATAACTCTTAATNACAA-GCAAAAACTTGCCATATTTATGATCACT-TTTATC-TTAGAACA-TA------------------A-----C-AA----------T----------TTA-----------TATA--A--AAC----CGNTGAAGGAT-AATACTAATTTTT--CCC-GGTGAATCCTT-CACTT-AA---AAC-TTTCGATTACCTTTCATTCTTTAGACTAAT--T--AT-TCANTAATA---TTCAT---TGNTG-CTTCCCCTT-TN-TCTCTCTCTCT------CCC----TTTT--CC--TCTTTC-------TCTTTT---TTTT-----------TTTTTTG--GTTTGCGAAA-------GGGGG--------------GGTCCGGA----NCCCCTG---GA-CCCCCCCTCT-GGATCCGCC-CTTTG
Reference ( gi|1 ) : ATCAAAATACATTCCAAAAAT-------AGTATTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTA--ATCGTCATACTAAAGTACAAGT--TTGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--------------AATGATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATG-----C----A-------AG-TATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAGAAAGCAAAAATTTATCAT-TTTATGATCACT-TTTATC-TGAGAACA-TA------------------A-----C-AA----------TG---------TTA-----------TATA--A--AAC----GGACGAAGAATTGATACTAATTTTT--CCC-GGTGAATCCAT-CACTTTAA---AACATTTCAATCACCTTTCATTCTTTAAACTAAT--T--AT-TCAG-AATA---TTCAT---TGCTGACTTCCCCTT-TT-TCTCTCTCTCT------CCC----TTTT--CC--TCTTTC-------TTTTTT---TTTTA----------TTTTTTG--GTTTGCGAAA-------GCAGG--------------GGTCCGGG----ACCCCTG---GA-CCCCCCCTCTGGGATCCGCC-CTTTG
gi|17 : ATCAAAATACATTCTAGAA-T-------GTTATTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAG
gi|2 : aAAAATTCATTCCAAAAAT-------GTTATTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTA--ATCGCCATACTATAGTGTA--C--TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTACTTATCCTAAATTTAAATGATCC--------ACCGA---------TGTTGATAAATTTGAATGATGAAAT-T----A-------AG-TATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAACAAAGCAAAAACTTACCTTATTTATGATCACT-TTTATA-AGAAAATG-TAG-----------------A-----A-AA----------AG---------TT--------------TA--A--ACC------ATAAAGGG-TAATATTAATTTTTTCCCC-GGTGAATCCTT-CATT-------AAC-TTTCAATTAACTTTCATTCTTTAGACTTTT--C--CT-TCCGTAATA---TT-AT---T
gi|10 : taAAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATGGT--AATTTATTGTATCTAACGAAAATATCATAAATTTGAGTG----TG-TCATCGTAC--------------aaaa
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC----------------TTATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATG-----CAATTA-------AG-TATCTCC--------------TGACTCG-AA-ATCTTTAttatct
gi|19 : GAAAATATCATAAATTTGAGTG-------TCATCGTAC--------------g
gi|3 : ATAAATCTTAATGATGAATGTT----A-------AGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA----------ACTTGCCATATTTATGATCACTCTTTATC-TTAGAATAACA------------------AGAAGGC-AA----------CT---------TTAAAAGAAGCAATTATA--ACAAAC----CGATAAAGGATC-ATATTA-TTGTT--CCC-GGTGAATCCCTTCACTT--A---ATCTGTTCGA---CTTTCCATTCAT--AA-TAATGTT--AT----A-AAT----TTC-T---TGATTGTATTCTCTT-TA-TCTCTTTCTAT------CTC----TTTTTACC--TCTTTCCCCCGTCTTTTTT---TTTT-----------TTTTTTG--GTATGCGAAA-------G-GGG--------------GGTCCGG-----ACCCCTG---GACCCCCCCCTCT-GGATCCGCA-CCTTGttatatgtatcctagattta
gi|4 : AAATTTAAATGATG-----C----ACTGATTAAG--ATCACCTT-TCCA-TCATTTTG-CCTGTAC-GTCGGTAAAAATTGAATAACTCTTAATTA----------ACTTGCCATATTTATGATCACT-TTTATC-TTGGAACA-TA------------------A-----C-AAGAGCAACTTTTAAAGAAGCAATTA-----------TATACAA--AAC----CGTAGAAGGATAATTACT--TTTTT--CCCCGGTGAATCCTC-CACTT------AATCTTTCGA---CTTTCCATTC-----AGTAAT-----ATGTTAT-AA-A---TTC-T---TGTTG---TTCTCTT-TT-TCTCTTTCTAT------TCT----TTTT--CCC-TCTTTCCCCC---TCTTTT---TTTTT----------TTTTTTG--GTATGCGAAA-------G-GGG--------------GGTCCGAC-----CCCCTG---GACCCCCCCCTCT-GGATCCGCC-CTTc
gi|13 : AA-CTAAATAACTCTTAATAACAATGCAAAAACTTACCACATTTATGAACACT-TTTATC-TTAGAAAA-TA------------------A-----C-AA----------gc
gi|14 : -TTTATGATCACT-TTTATCGTG-GAACA-TA------------------A-----C-AA----------gaagcaacttatactaagctgtagaaggataaca
gi|9 : ttgccatatataATGATCACT-TTTATC-TTAGAATA-TATCAAAACGCAACTTAAGGA-----CCAA----------T----------TTA-----------TACA--A--AACCATAGCCCTAAGGAT-AATACTATTTTTT--CCT-GGTGAAT-------CTTTAG---A-----CTAATAA---TTCA----GTAA---AAT------T-TTAT-AA-A---TTC-T---TGTTG---TCCCCTC-TC-TCTCTCTgaagcaattcatttagtaacatttgtttttatatataa
gi|5 : -TAAGAAC----------------------------C-AA----------T----------CTA-----------TACA--A--AAC-------TGTAGA-------CTGATTTTT--CCCTGGTGAATCCTT-CACTT-AACTCAGCATTTCAATTATCTCTCATTATTTAGACT--T--TCCAA-TCAGTAATATATTTTATATATAAAAACTTGTTCTC-TG-TCTC-CTCTCT------CTC----T------C--TCTTAC-------TTTTTT---T-----------------------GATTGCTAAA-------GGAGG--------------GGGGGGGG----AGTCC-G---GA--CCCCCCTCT-GTATCCGCC-CTT
gi|12 : cataacaagaagcaactTGTCTTCCCCCT-CTCTCTTTCTCTCTTTTCCCCCC----TTTT--TC---CTTTT-------TTTTTT---TTTTAAATTTTTTTTTTTTTTG--TTTTGCGAAA-------GGGGG--------------GGTCCCGA----CCCCCTG---GG-CCCCCCCCCgg
gi|8 : tTGTCTTCCCCCT-----CTCCCTTCCC------CCC----TTTTTCCC--CCTTTT-------CCTTTT---TTTTG----------TTT------GTTTGCGAAAGGGGAGGGGGGG--------------GGTCCGGA----CCCCCTGCCCCC-CCCCCCCTCT-GGATCCGCC-CTTcccccttg
gi|6 : tTTCCCCC------CTCTCTTTCT------CTC----TTTT--CC--CCCTT--------TCCTTT---TTTTA------------TTTTG--GTTTGCGAAAGG-----GGGGG--------------GGTCCGGA----CCCCCTG---GA-CCCCCCCTCT-GGATCCGCC-CTTgccttatacgatactatcgtctgtatggtaagaaaatttgt
gi|7 : gttCCTTATT-TCTCTCT-TTT------CCCACCTTTTT--CCTATGTTTC-------TTATATAAGTTTT-----------TTTTTTGATATTTGTGAAA-------GGGGGGGGGGGGTGAGGTTGGTCCGGACCTCACCCATG---GT-ACCCCCCTCTGGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): CCTTTATCCCCCCTTTTTTTTTTTGATTTGCCGAAAGGGGGGTTGGGGCAGGTCTCGGACCTCTGTATCCGTTCTTGG
Unaligned ( gi|16 ): TAAGTTTGGTCACCAAAAGGAGGGGGAGTGGAGGGCCCCCTGGACCCCCTCTAAATCCGCCACTGAA
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 111 33333 4444444 44444 1 66666666666 11 2 44444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222 1 33333333333 1111 333333333333333333333 1 111111 2222222 22222222222222 33333333333333333333333333 1111111111 22222222222222 11111111 11
lowQualScore : 3 2222222 2 1 1 0 333 1 77 77777 1 0000000 44444 99 3 0 11 4 3 55555555555 0 0 8 11 5 0 3 0 8 22 8 0 1 22222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 77 2222222 5 5 99 99 3 6 00000000000 6 2 7777 777777777777777777777 5 777777 1 5555555 4 1 4 2 88888888888888 66 4 88888888888888888888888888 4 55 4 3333333333 99999999999999 4 33333333 4 777 55 4 4 4
lowQualScore : . ....... . . . . ... . .. ..... . ....... ..... .. . . .. . . ........... . . . .. . . . . . .. . . . ........... .... . . . .. ................................................................................... . .. ....... . . .. .. . . ........... . . .... ..................... . ...... . ....... . . . . .............. .. . .......................... . .. . .......... .............. . ........ . ... .. . . .
lowQualScore : 2 5555555 0 0 0 7 777 0 33 77777 0 2222222 88888 00 2 2 77 7 3 00000000000 8 8 0 22 6 6 2 4 0 00 0 8 0 66666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 99 6666666 7 7 22 22 3 7 88888888888 7 2 3333 888888888888888888888 5 777777 0 7777777 4 0 4 5 88888888888888 11 4 66666666666666666666666666 4 55 0 5555555555 00000000000000 0 00000000 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAATATCGCCATACTATAGTGTAA-TT-TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATG-AA--T-----AAGTATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCGNNG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AA---NAC-T-TTCGATTACCTTTCATTCTTTAGACTAAT-T--GTTC-GTAATAT---TCATTGNT-G----CTTCCCCTC-TCTCTC-TCTCTCT-------CCC----TTTT--CC-TCTTTC----TC------T-TTT---------TTTT-TTTTTTGGT--TTG-CGAAA-------GG-GGGGG--------------TCCGG-AC---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCTAAAAATGTTA-------TTGCGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGNCGATCTNGGCTAATATCGCNATACTATGGTGTAATCTATTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCAACTCATCGTAC--A-AT-NATCCTAGATTTAANCGAACCA-CCGATGTTGATAAATTTGAATGATG-AA--C-----AAGTATCACCTT-TCCAATCATTTTGACTCGTAA-GTCNNTAAAA-CTGAATAACTCTTAATNAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TATAA--AACCGNTG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AA---AAC-T-TTCGATTACCTTTCATTCTTTAGACTAAT-T--ATTCANTAATAT---TCATTGNT-G----CTTCCCCTT-TNTCTC-TCTCTCT-------CCC----TTTT--CC-TCTTTC----TC------T-TTT---------TTTT-TTTTTTGGT--TTG-CGAAA-------GG-GGGGG--------------TCCGG-AN---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTAAT--CGTCATACTAAAGTACAAGTT--TGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--A-AT-GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATG-----C-----AAGTATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAG-AAAGCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGGACG----AAGAATTGAT-ACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAA---AACAT-TTCAATCACCTTTCATTCTTTAAACTAAT-T--ATTCAG-AATAT---TCATTGCT-GA---CTTCCCCTT-TTTCTC-TCTCTCT-------CCC----TTTT--CC-TCTTTC----TT------T-TTT---------TTTTATTTTTTGGT--TTG-CGAAA-------GC-AGGGG--------------TCCGG-GA---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATG--GTAATTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC-----T-TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGCAAT-T-----AAGTATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : TCCCCCTC-TCTCTT-TCTCTCTTTTCCCCCCT----TTTT--CC-TTTTTT----TT------T-TTTTTAAATTTTTTTT-TTTTTTGTT--TTG-CGAAA-------GG-GGGGG--------------TCCCG-AC---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : ttgtctAA-CTAAATAACTCTTAATAAC-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTGTAG----AAGGAT-AAC-Acccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CC-TTTATC----CC------C-CCT---------TTTT-TTTTTTGAT--TTGCCGAAA-------GG-GGGGT--------------TGGGGCAG---G---TCT-CG---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CAC-CAAAA-------GGAGGGGG--------------AGTGG-AGGGCC---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGAGTG-------TCATCGTACTTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTA--ATCGCCATACTATAGTGTA--C--TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTAC-----T-TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATG-AAATT-----AAGTATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAACAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACC-ATA----AAGGGT-AAT-ATTAATTTTTTCCCC-GGTGAATCC-TTCATT-------AAC-T-TTCAATTAACTTTCATTCTTTAGACTTTT-C--CTTCCGTAATAT---T-ATT
gi|3 : taATAAATCTTAATGATG-AA--TGTTA-AGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA-----------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA----AAGGAT-CAT-ATTA-TTGTT--CCC-GGTGAATCCCTTCACTT-AA---T-C-TGTTCGA---CTTTCCATTC---ATAATAAT----GTT--ATAA-AT---TTCTTGATTG----TATTCTCTT-TATCTC-TTTCTAT-------CTC----TTTTTACC-TCTTTC----CCCCGTCTT-TTTT--------TTTT-TTTTTTGGT--ATG-CGAAA--------G-GGGGG--------------TCCGG-A----C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGaaaa
gi|4 : AAATTTAAATGATG-CA--CTGATTAAG-ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA-----------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCGTAG----AAGGAT-AATTACT--TTTTT--CCCCGGTGAATCC-TCCACTT-AA---T-C-T-TTCGA---CTTTCCATTC---AG--TAATAT--GTT--ATAA-AT---TC-TTGTT-G----TT--CTCTT-TTTCTC-TTTCTAT-------TCT----TTTT--CCCTCTTTCCCCCTC------TTTTT---------TTTT-TTTTTTGGT--ATG-CGAAA--------G-GGGGG--------------TCC-G-AC---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTGT-------AG--------ACTGATTTTT--CCCTGGTGAATCC-TTCACTT-AACTCAGCAT-TTCAATTATCTCTCATTATTTAGACT--T-TCCAATCAGTAATATATTTTATATAT-AAAAACTTGTTCTC-TGTCTCCTCTCTCT-------C-------------------TC----TC------T-TAC---------TTTT-TTT----GA--TTG-CTAAA-------GGAGGGGG--------------GGGGG-AG---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCCCC-TCTCTT-TCTCTCT--------------TTTC--CC-CCTTTC----C----------TT---------TTTT-TATTTTGGT--TTG-CGAAA-------GG-GGGGGGG------------TCCGG-AC---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gttCCTTATTTCTC-TCTTT-T-------CCCACCTTTTT--CC-TATGTT----TC------T-TATATAAG----TTTT-TTTTTTGATATTTG-TGAAA-------GG-GGGGGGGGGGTGAGGTTGGTCCGG-AC---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : ttgtgcttccctcctctcctcat----CTTCCCCCT--CTCCC-T-TCCCC-------CCT----TTTT--CC-CCCTTT----TC------C-TTT---------TTTT-TGTTT--GT--TTG-CGAAAGGGGAGGGG-GGGGG--------------TCCGG-AC---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ttgtATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCATAGCCCTAAGGAT-AAT-ACTATTTTTT--CCT-GGTGAATCT-TT-------A---GAC-T-----AATA------ATTCAGTAA---AAT-T---TT--ATAA-AT---TC-TTGTT-G------TCCCCTC-TCTCTC-TCTgccttatacgatactatcgtctgtatggtaagaaaatttgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 111 22222 4444444 44444 1 5555555555555 11 2 44444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 1 2222222222 1111 44444444444444444444444 11111 11 2222222 222222222222 222222222222222 555555555555555555555555555 1111111 22222222222222 11111111111 11
lowQualScore : 3 2222222 333 6 88888 1 3333333 44444 8 3 0 0 1 3 9999999999999 0 0 8 11 5 0 3 0 8 11 8 0 1 22222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 77 22 2222 5 5 99 99 3 6 2 6666666666 6 2 7777 22222222222222222222222 88888 55 7 0000000 222222222222 555555555555555 66 4 000000000000000000000000000 4 55 8 3333333 99999999999999 44444444444 4 777 55 4 4 4
lowQualScore : . ....... ... . ..... . ....... ..... . . . . . . ............. . . . .. . . . . . .. . . . ........... .... . . . .. ................................................................................... .. .. .... . . .. .. . . . .......... . . .... ....................... ..... .. . ....... ............ ............... .. . ........................... . .. . ....... .............. ........... . ... .. . . .
lowQualScore : 2 5555555 777 7 77777 0 0000000 88888 0 2 2 7 0 3 4444444444444 8 8 0 22 6 6 2 4 0 22 0 8 4 66666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 1111 7 7 22 22 3 7 5 7777777777 7 2 3333 55555555555555555555555 22222 00 5 9999999 888888888888 222222222222222 11 4 111111111111111111111111111 4 55 0 0000000 00000000000000 22222222222 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAATATCGCCATACTATAGTGTAA-T--TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATG-AA-T---T----AAGTATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCGNAG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATA---TTCATTGNT----G-CTTCCCCTCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAATATCGCCATACTATAGTGTAATT--TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATG-AA-----T----AAGTATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCGNNG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-TGTT-CGTAATA---TTCATTGNT----G-CTTCCCCTCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTAAT--CGTCATACTAAAGTACAAGT--TTGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--A-AT-GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATG--------C----AAGTATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAG-AAAGCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGGACG----AAGAATTGAT-ACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAAAACA---T-TTCAATCACCTTTCATTCTTTAAACT----AAT-TATT-CAGAATA---TTCATTGCT----GACTTCCCCTTTTTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TT-------T-TTT---------TTTTATTTTTTGGT--TTGCGAAAGC-AG-------GGG--------------TCCGGG---A---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATG--GTAATTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC-----T-TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGCAAT----T----AAGTATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : TCCCCCTCTCTC------------TTTCTCTCTTTTCCCCCCT-----TTTT--CC-TTTTTT----TT-------T-TTTTTAAATTTTTTTT-TTTTTTGTT--TTGCGAAAGG-GG-------GGG--------------TCCCGA---C---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : ttgtctAA-CTAAATAACTCTTAATAAC-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTGTAG----AAGGAT-AAC-Acccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CC-TTTATC----CC-------C-CCT---------TTTT-TTTTTTGAT--TTGCCGAAAG-GG-------GGG--------------TTGGGG---CAGGT---CTC--G---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CACCAAAAGGAGG-------GGG--------------AGTGGAGGGC---C---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGAGTG-------TCATCGTACTTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTA--ATCGCCATACTATAGTGTA--C--TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTAC-----T-TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATG-AAAT---T----AAGTATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAACAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACC-ATA----AAGGGT-AAT-ATTAATTTTTTCCCC-GGTGAATCC-TTCA-TT-A--AC----T-TTCAATTAACTTTCATTCTTTAGACT----TTT-CCTTCCGTAATA---TT-ATT
gi|3 : taATAAATCTTAATGATG-AA-----TGTTAAGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA-----------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA----AAGGAT-CAT-ATTA-TTGTT--CCC-GGTGAATCCCTTCACTT-AAT-C----TGTTCGA---CTTTCCATTC---ATAAT----AAT--GTT--ATAA-A---TTTCTTGATT---G-TATTCTCTTTATC------------TCTTTCTAT-------CTC-----TTTTTACC-TCTTTC----CCCCGTCTTT-TTT---------TTTT-TTTTTTGGT--ATGCGAAAGG-GG-------GG---------------TCCGGA-------C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGaaaa
gi|4 : AAATTTAAATGATG-CACTGATT----AAG-ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA-----------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCGTAG----AAGGAT-AATTACT--TTTTT--CCCCGGTGAATCC-TCCACTT-AAT-C----T-TTCGA---CTTTCCATTC---AG--T----AATATGTT--ATAA-A---TTC-TTGTT----G-TT--CTCTTTTTC------------TCTTTCTAT-------TCT-----TTTT--CCCTCTTTCCCCCTC-------TTTTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCC-GA---C---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTGTAG----A-----------CTGATTTTT--CCCTGGTGAATCC-TTCACTT-AACTCAGCAT-TTCAATTATCTCTCATTATTTAGACTTTCCAAT-CA----GTAATATATTTTATATATAAAAA-CTTGTTCTCTGTC------------TC-CTCTCT-------CTC-----T------C-TCTTAC------------------------------T-TTTTTTGA---TTGCTAAAGGAGG-------GGG--------------GGGGGA---G---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCCCCTCTC------------TTTCTCTCT---------------TTTC--CC-CCTTTC----C-----------TT---------TTTT-TATTTTGGT--TTGCGAAAGG-GG-------GGGGG------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gttTTG-T----G-CTTCCCTCCTCTCCTCATCCTTATTTCTCTCTTT-------TCCCACCTTTTT--CC-TATGTT----TC-------T-TATATAAG----TTTT-TTTTTTGATATTTGTGAAAGG-GG-------GGGGGGGGTGAGGTTGGTCCGGA---C---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : -CTTCCCC-CTCTC------------CCT-TCCCC-------CCT-----TTTT--CC-CCCTTT----TC-------C-TTT---------TTTT-TGTTT--GT--TTGCGAAAGG-GGAGGGGGGGGG--------------TCCGGA---C---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ttgtATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCATAGCCCTAAGGAT-AAT-ACTATTTTTT--CCT-GGTGAATCT-TT-------AGAC----T-----AATA------ATTCAGTAA-------AAT---TT-TATAA-A---TTC-TTGTT----G---TCCCCTCTCTC------------TCTCTgccttatacgatactatcgtctgtatggtaagaaaatttgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 111 33333 4444444 44444 1 333333333 11 2 44444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 1 2222222222 1111 3333333333333333333333 1 3333333 222222222222 222222222222222 555555555555555555555555555 1111111 22222222222222 11111111111 11
lowQualScore : 3 2222222 333 6 7 22222 1 3333333 44444 8 3 0 0 1 3 999999999 88 0 8 11 5 0 3 0 8 11 8 0 1 22222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 77 1 2222 5 5 99 99 3 6 2 6666666666 6 2 7777 3333333333333333333333 5 1111111 999999 222222222222 555555555555555 66 4 000000000000000000000000000 4 55 8 3333333 99999999999999 44444444444 4 777 55 4 4 4
lowQualScore : . ....... ... . . ..... . ....... ..... . . . . . . ......... .. . . .. . . . . . .. . . . ........... .... . . . .. ................................................................................... .. . .... . . .. .. . . . .......... . . .... ...................... . ....... ...... ............ ............... .. . ........................... . .. . ....... .............. ........... . ... .. . . .
lowQualScore : 2 5555555 777 7 3 77777 0 0000000 88888 0 2 2 7 0 3 444444444 88 8 0 22 6 6 2 4 0 22 0 8 4 66666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 0 1111 7 7 22 22 3 7 5 7777777777 7 2 3333 3333333333333333333333 5 7777777 666666 888888888888 222222222222222 11 4 111111111111111111111111111 4 55 0 0000000 00000000000000 22222222222 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAATATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGC---AAT--TAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCGTAG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-----ATTGNT-G-CTTCCCCTCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAATATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATG----AAT--TAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCGNAG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-----ATTGNT-G-CTTCCCCTCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTAAT--CGTCATACTAAAGTACAAGT---TTGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--A-AT-GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATG---------CAAG-TATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAG-AAAGCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGGACG----AAGAATTGAT-ACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAAAACA---T-TTCAATCACCTTTCATTCTTTAAACT----AAT-TATT-CAGAATATTC-----ATTGCT-GACTTCCCCTTTTTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TT-------T-TTT---------TTTTATTTTTTGGT--TTGCGAAAGC-AG-------GGG--------------TCCGGG---A---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATG--GTAA-TTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC-----T-TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGC---AAT--TAAG-TATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : TCCCCCTCTCTC------------TTTCTCTCTTTTCCCCCCT-----TTTT--CC-TTTTTT----TT-------T-TTTTTAAATTTTTTTT-TTTTTTGTT--TTGCGAAAGG-GG-------GGG--------------TCCCGA---C---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : ttgtctAA-CTAAATAACTCTTAATAAC-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTGTAG----AAGGAT-AAC-Acccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CC-TTTATC----CC-------C-CCT---------TTTT-TTTTTTGAT--TTGCCGAAAG-GG-------GGG--------------TTGGGG---CAGGT---CTC--G---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CACCAAAAGGAGG-------GGG--------------AGTGGAGGGC---C---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGAGTG-------TCATCGTACTTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTA--ATCGCCATACTATAGTGT-A-C---TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTAC-----T-TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATGA---AAT--TAAG-TATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAACAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACCATA-----AAGGGT-AAT-ATTAATTTTTTCCCC-GGTGAATCC-TTCA-TT-A--AC----T-TTCAATTAACTTTCATTCTTTAGACT----TTT-CCTTCCGTAATATT------ATT
gi|3 : taATAAATCTTAATGATG----AATGTTAAGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA-----------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA----AAGGAT-CAT-ATTA-TTGTT--CCC-GGTGAATCCCTTCACTT-AAT-C----TGTTCGA---CTTTCCATTC---ATAAT----AAT--GTT--ATAA-ATTT-----CTTGATTG-TATTCTCTTTATC------------TCTTTCTAT-------CTC-----TTTTTACC-TCTTTC----CCCCGTCTTT-TTT---------TTTT-TTTTTTGGT--ATGCGAAAGG-GG-------GG---------------TCCGGA-------C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGaaaa
gi|4 : AAATTTAAATGATGCACTGAT--TAAG--ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA-----------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCGTAG----AAGGAT-AATTACT--TTTTT--CCCCGGTGAATCC-TCCACTT-AAT-C----T-TTCGA---CTTTCCATTC---AG--T----AATATGTT--ATAA-ATTC------TTGTT-G-TT--CTCTTTTTC------------TCTTTCTAT-------TCT-----TTTT--CCCTCTTTCCCCCTC-------TTTTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCC-GA---C---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTGTAG----A-----------CTGATTTTT--CCCTGGTGAATCC-TTCACTT-AACTCAGCAT-TTCAATTATCTCTCATTATTTAGACTTTCCAAT-CAGT-AATA-TATTTTATATATAAAA-A-CTTGTTCTCTGTC------------TC-CTCTCT-------CTC-----T------C-TCTTAC------------------------------T-TTTTTTGA---TTGCTAAAGGAGG-------GGG--------------GGGGGA---G---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCCCCTCTC------------TTTCTCTCT---------------TTTC--CC-CCTTTC----C-----------TT---------TTTT-TATTTTGGT--TTGCGAAAGG-GG-------GGGGG------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gttTTG-T-G-CTTCCCTCCTCTCCTCATCCTTATTTCTCTCTTT-------TCCCACCTTTTT--CC-TATGTT----TC-------T-TATATAAG----TTTT-TTTTTTGATATTTGTGAAAGG-GG-------GGGGGGGGTGAGGTTGGTCCGGA---C---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : -CTTCCCC-CTCTC------------CCT-TCCCC-------CCT-----TTTT--CC-CCCTTT----TC-------C-TTT---------TTTT-TGTTT--GT--TTGCGAAAGG-GGAGGGGGGGGG--------------TCCGGA---C---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ttgtATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCATAGCCCTAAGGAT-AAT-ACTATTTTTT--CCT-GGTGAATCT-TT-------AGAC----T-----AATA------ATTCAGTAA-------AAT---TT-TATAA-ATTC------TTGTT-G---TCCCCTCTCTC------------TCTCTgccttatacgatactatcgtctgtatggtaagaaaatttgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 33 444444 4444444 44444 1 222 11 2 44444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1 2222222222 111111 3333333333333333333333 1 3333333 11 222222222222 222222222222222 555555555555555555555555555 1111111 22222222222222 11111111111 11
lowQualScore : 3 2222222 00 6 000000 1 3333333 44444 8 3 0 0 1 3 222 0 88 0 8 11 5 0 3 0 8 11 8 0 1 22222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 77 5 66666 5 5 99 99 3 6 2 6666666666 6 000000 3333333333333333333333 5 1111111 44 77 222222222222 555555555555555 66 4 000000000000000000000000000 4 55 1 8 3333333 99999999999999 44444444444 4 777 55 4 4 4
lowQualScore : . ....... .. . ...... . ....... ..... . . . . . . ... . .. . . .. . . . . . .. . . . ........... .... . . . .. ................................................................................... .. . ..... . . .. .. . . . .......... . ...... ...................... . ....... .. .. ............ ............... .. . ........................... . .. . . ....... .............. ........... . ... .. . . .
lowQualScore : 2 5555555 77 7 000000 0 0000000 88888 0 2 2 7 0 3 000 8 88 8 0 22 6 6 2 4 0 22 0 8 4 66666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 7 44444 7 7 22 22 3 7 5 7777777777 7 555555 3333333333333333333333 5 7777777 22 44 888888888888 222222222222222 11 4 111111111111111111111111111 4 55 6 0 0000000 00000000000000 22222222222 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAAT--CGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATT-----CATTG-TTG-CTTCCCCTCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAATATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAAC-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGAT-AAT-ACTAATTTTT--CCC-GGTGAATCC-TTCACTT-AANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATT-----CATTG-NTG-CTTCCCCTCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTAAT--CGTCATACTAAAGTACAAGT---TTGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--A-AT-GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATGCA---A----G-TATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAG-AAAGCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGG-ACG----AAGAATTGAT-ACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAAAACA---T-TTCAATCACCTTTCATTCTTTAAACT----AAT-TATT-CAGAATATT-----CATTG-CTGACTTCCCCTTTTTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TT-------T-TTT---------TTTTATTTTTTGGT--TTGCGAAAGC-AG-------GGG--------------TCCGGG---A---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATG--GTAA-TTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC-----T-TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGCA---ATTAAG-TATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : TCCCCCTCTCTC------------TTTCTCTCTTTTCCCCCCT-----TTTT--CC-TTTTTT----TT-------T-TTTTTAAATTTTTTTT-TTTTTTGTT--TTGCGAAAGG-GG-------GGG--------------TCCCGA---C---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : ttgtctAA-CTAAATAACTCTTAATAAC-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTG-TAG----AAGGAT-AAC-Acccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CC-TTTATC----CC-------C-CCT---------TTTT-TTTTTTGAT--TTGCCGAAAG-GG-------GGG--------------TTGGGG---CAGGT---CTC--G---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CACCAAAAGGAGG-------GGG--------------AGTGGAGGGC---C---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGAGTG-------TCATCGTACTTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTAAT--CGCCATACTATAGTGTA--C---TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTAC-----T-TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATGAA---ATTAAG-TATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAACAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACCA-TA-----AAGGGT-AAT-ATTAATTTTTTCCCC-GGTGAATCC-TTCA-TT-A--AC----T-TTCAATTAACTTTCATTCTTTAGACT----TTT-CCTTCCGTAATATT------ATT
gi|3 : taATAAATCTTAATGATGAAT--GTTAAGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA-----------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA-----AAGGAT-CAT-ATTA-TTGTT--CCC-GGTGAATCCCTTCACTT-AAT-C----TGTTCG---ACTTTCCATTC---ATAAT----AAT--GTT--ATAA-ATT-----TCTTGATTG-TATTCTCTTTATC------------TCTTTCTAT-------CTC-----TTTTTACC-TCTTTC----CCCCGTCTTT-TTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCCGGA-------C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGaaaa
gi|4 : AAATTTAAATGATGCACTGATTAAG--ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA-----------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCG-TAG----AAGGAT-AATTACT--TTTTT--CCCCGGTGAATCC-TCCACTT-AAT-C----T-TTCGA---CTTTCCATTC---AG--T----AATATGTT--ATAA-ATT-----C-TTG-TTG-TT--CTCTTTTTC------------TCTTTCTAT-------TCT-----TTTT--CCCTCTTTCCCCCTC-------TTTTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCC-GA---C---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTG-TAG----A-----------CTGATTTTT--CCCTGGTGAATCC-TTCACTT-AACTCAGCAT-TTCAATTATCTCTCATTATTTAGACTTTCCAAT-CAGT-AAT-ATATTTTATATATAA-AAA-CTTGTTCTCTGTC------------TC-CTCTCT-------CTC-----T------C-TCTTAC------------------------------T-TTTTTTGA---TTGCTAAAGGAGG-------GGG--------------GGGGGA---G---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCCCCTCTC------------TTTCTCTCT---------------TTTC--CC-CCTTTC----C-----------TT---------TTTT-TATTTTGGT--TTGCGAAAGG-GG-------GGGGG------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gttTTG--TG-CTTCCCTCCTCTCCTCATCCTTATTTCTCTCTTT-------TCCCACCTTTTT--CC-TATGTT----TC-------T-TATATAAG----TTTT-TTTTTTGATATTTGTGAAAGG-GG-------GGGGGGGGTGAGGTTGGTCCGGA---C---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : -CTTCCCC-CTCTC------------CCT-TCCCC-------CCT-----TTTT--CC-CCCTTT----TC-------C-TTT---------TTTT-TGTTT--GT--TTGCGAAAGG-GGAGGGGGGGGG--------------TCCGGA---C---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ttgtATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCA-TAGCCCTAAGGAT-AAT-ACTATTTTTT--CCT-GGTGAATCT-TT-------AGAC----T-----AATA------ATTCAGTAA-------AAT---TT-TATAA-ATT-----C-TTG-TTG---TCCCCTCTCTC------------TCTCTgccttatacgatactatcgtctgtatggtaagaaaatttgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333 4444444 44444 1 2222 11 2 444444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1 2222222 111111 3333333333333333333333 1 22 3333333333 222222222222 222222222222222 555555555555555555555555555 1111111 22222222222222 11111111111 11
lowQualScore : 3 2222222 88 6 7 22222 1 3333333 44444 8 3 0 0 1 3 2222 88 0 8 11 5 0 3 0 8 11 8 0 1 222222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 77 5 66666 5 5 99 99 3 6 99 5555555 6 000000 3333333333333333333333 5 44 5 2222222222 4 222222222222 555555555555555 66 4 000000000000000000000000000 4 55 1 8 3333333 99999999999999 44444444444 4 777 55 4 4 4
lowQualScore : . ....... .. . . ..... . ....... ..... . . . . . . .... .. . . .. . . . . . .. . . . ............ .... . . . .. ................................................................................... .. . ..... . . .. .. . . .. ....... . ...... ...................... . .. . .......... . ............ ............... .. . ........................... . .. . . ....... .............. ........... . ... .. . . .
lowQualScore : 2 5555555 33 7 3 77777 0 0000000 88888 0 2 2 7 0 3 8888 88 8 0 22 6 6 2 4 0 22 0 8 4 666666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 7 44444 7 7 22 22 3 7 22 8888888 7 555555 3333333333333333333333 5 77 0 2222222222 4 888888888888 222222222222222 11 4 111111111111111111111111111 4 55 6 0 0000000 00000000000000 22222222222 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-TTG-T---TG----CTTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTCATTG-T---TG----CTTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC-------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTA--ATCGTCATACTAAAGTACAAGT---TTGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--A-AT-GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATGC-------AAG-TATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAGA-AA-GCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGG-ACG----AAGAATTGAT-ACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAAAACA---T-TTCAATCACCTTTCATTCTTTAAACT----AAT-TATT-CAGAATATTCATTG-C---TGA---CTTCCCC-TTTTTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TT-------T-TTT---------TTTTATTTTTTGGT--TTGCGAAAGC-AG-------GGG--------------TCCGGG---A---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATG--GTAA-TTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC-----T-TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGCA---ATTAAG-TATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : TTG-T---------CTTCCCCCTCTCTC------------TTTCTCTCTTTTCCCCCCT-----TTTT--CC-TTTTTT----TT-------T-TTTTTAAATTTTTTTT-TTTTTTGTT--TTGCGAAAGG-GG-------GGG--------------TCCCGA---C---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : AA-CTAAATAACTCTTAATAA-C-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTG-TAG----AAGGA-TAAC-Acccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CC-TTTATC----CC-------C-CCT---------TTTT-TTTTTTGAT--TTGCCGAAAG-GG-------GGG--------------TTGGGG---CAGGT---CTC--G---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CACCAAAAGGAGG-------GGG--------------AGTGGAGGGC---C---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGAGTG-------TCATCGTACTTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTA--ATCGCCATACTATAGTGT-A-C---TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTAC-----T-TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATGAA---ATTAAG-TATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAA-CAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACCA-TA-----AAGGG-TAAT-ATTAATTTTTTCCCC-GGTGAATCC-TTCA--TTA--AC----T-TTCAATTAACTTTCATTCTTTAGACT----TTT-CCTTCCGTAATATT-ATT
gi|3 : taATAAATCTTAATGATGAAT--GTTAAGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA------------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA-----AAGGA-TCAT-ATTA-TTGTT--CCC-GGTGAATCCCTTCAC-TTAAT-C----TGTTCG---ACTTTCCATTC---ATAAT----AAT--GTT--ATAA-ATTTCTTGAT---TG----TATTCTC-TTTATC------------TCTTTCTAT-------CTC-----TTTTTACC-TCTTTC----CCCCGTCTTT-TTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCCGGA-------C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGaaaa
gi|4 : AAATTTAAATGATGCACTGATTAAG--ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA------------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCG-TAG----AAGGA-TAATTACT--TTTTT--CCCCGGTGAATCC-TCCAC-TTAAT-C----T-TTCGA---CTTTCCATTC---AG--T----AATATGTT--ATAA-ATTC-TTG-T---TG----TT--CTC-TTTTTC------------TCTTTCTAT-------TCT-----TTTT--CCCTCTTTCCCCCTC-------TTTTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCC-GA---C---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTG-TAG----A-----------CTGATTTTT--CCCTGGTGAATCC-TTCAC-TTAACTCAGCAT-TTCAATTATCTCTCATTATTTAGACTTTCCAAT-CAGT-AATA-TATT--TTA-TATATAAAAACTTGTTC-TCTGTC------------TC-CTCTCT-------CTC-----T------C-TCTTAC------------------------------T-TTTTTTGA---TTGCTAAAGGAGG-------GGG--------------GGGGGA---G---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCC-CCTCTC------------TTTCTCTCT---------------TTTC--CC-CCTTTC----C-----------TT---------TTTT-TATTTTGGT--TTGCGAAAGG-GG-------GGGGG------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gttTTG-T----G----CTTCCCT-CCTCTCCTCATCCTTATTTCTCTCTTT-------TCCCACCTTTTT--CC-TATGTT----TC-------T-TATATAAG----TTTT-TTTTTTGATATTTGTGAAAGG-GG-------GGGGGGGGTGAGGTTGGTCCGGA---C---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : TTG-T---------CTTCCCC--CTCTC------------CCT-TCCCC-------CCT-----TTTT--CC-CCCTTT----TC-------C-TTT---------TTTT-TGTTT--GT--TTGCGAAAGG-GGAGGGGGGGGG--------------TCCGGA---C---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCA-TAGCCCTAAGGA-TAAT-ACTATTTTTT--CCT-GGTGAATCT-TT-------AGAC----T-----AATA------ATTCAGTAA-------AAT---TT-TATAA-ATTC-TTG-T---TG------TCCCC-TCTCTC------------TCTCTgccttatacgatactatcgtctgtatggtaagaaaatttgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333 4444444 44444 1 2222 11 2 444444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1 2222222 1111 3333333333333333333333 1 222222222 222222222222 222222222222222 55555555555555555555555555 1111111 22222222222222 11111111111 11
lowQualScore : 3 2222222 88 6 7 22222 1 3333333 44444 8 3 0 0 1 3 2222 88 0 8 11 5 0 3 0 8 11 8 0 1 222222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 77 5 66666 5 5 99 99 3 6 99 5555555 6 2 7777 3333333333333333333333 1 4 4 5 888888888 4 222222222222 555555555555555 66 4 22222222222222222222222222 4 55 1 8 3333333 99999999999999 44444444444 4 777 55 4 4 4
lowQualScore : . ....... .. . . ..... . ....... ..... . . . . . . .... .. . . .. . . . . . .. . . . ............ .... . . . .. ................................................................................... .. . ..... . . .. .. . . .. ....... . . .... ...................... . . . . ......... . ............ ............... .. . .......................... . .. . . ....... .............. ........... . ... .. . . .
lowQualScore : 2 5555555 33 7 3 77777 0 0000000 88888 0 2 2 7 0 3 8888 88 8 0 22 6 6 2 4 0 22 0 8 4 666666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 7 44444 7 7 22 22 3 7 22 8888888 7 2 3333 3333333333333333333333 7 4 4 0 555555555 4 888888888888 222222222222222 11 4 99999999999999999999999999 4 55 6 0 0000000 00000000000000 22222222222 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-T-TG-T-T----G-CTTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-T-TG-T-T----G-CTTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTA--ATCGTCATACTAAAGTACAAGT---TTGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--A-AT-GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATGC-------AAG-TATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAGA-AA-GCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGG-ACG----AAGAATTGAT-ACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAAAACA---T-TTCAATCACCTTTCATTCTTTAAACT----AAT-TATT-CAGAATATTCAT-TG-C-T----GACTTCCCC-TTTTTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TT------T-TTT---------TTTTATTTTTTGGT--TTGCGAAAGC-AG-------GGG--------------TCCGGG---A---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATG--GTAA-TTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC-----T-TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGCA---ATTAAG-TATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : -T-TG-T--------CTTCCCCCTCTCTC------------TTTCTCTCTTTTCCCCCCT-----TTTT--CC-TTTTTT----TT------T-TTTTTAAATTTTTTTT-TTTTTTGTT--TTGCGAAAGG-GG-------GGG--------------TCCCGA---C---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : AA-CTAAATAACTCTTAATAA-C-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTG-TAG----AAGGA-TAAC-Acccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CC-TTTATC----CC------C-CCT---------TTTT-TTTTTTGAT--TTGCCGAAAG-GG-------GGG--------------TTGGGG---CAGGT---CTC--G---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CACCAAAAGGAGG-------GGG--------------AGTGGAGGGC---C---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGAGTG-------TCATCGTACTTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTA--ATCGCCATACTATAGTGT-A-C---TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTAC-----T-TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATGAA---ATTAAG-TATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAA-CAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACCA-TA-----AAGGG-TAAT-ATTAATTTTTTCCCC-GGTGAATCC-TTCA--TTA--AC----T-TTCAATTAACTTTCATTCTTTAGACT----TTT-CCTTCCGTAATATTA-T-T
gi|3 : taATAAATCTTAATGATGAAT--GTTAAGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA------------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA-----AAGGA-TCAT-ATTA-TTGTT--CCC-GGTGAATCCCTTCAC-TTAAT-C----TGTTCGA---CTTTCCATTC---ATAAT----AAT--GTT--ATAAATTTC-T-TGAT-T----G-TATTCTC-TTTATC------------TCTTTCTAT-------CTC-----TTTTTACC-TCTTTC----CCCCGTCTT-TTTT--------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCCGGA-------C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGaaaa
gi|4 : AAATTTAAATGATGCACTGATTAAG--ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA------------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCG-TAG----AAGGA-TAATTACT--TTTTT--CCCCGGTGAATCC-TCCAC-TTAAT-C----T-TTCGA---CTTTCCATTC---AG--T----AATATGTT--ATAA-ATTC-T-TG-T-T----G-TT--CTC-TTTTTC------------TCTTTCTAT-------TCT-----TTTT--CCCTCTTTCCCCCTC------TTTTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCC-GA---C---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTG-TAG----A-----------CTGATTTTT--CCCTGGTGAATCC-TTCAC-TTAACTCAGCAT-TTCAATTATCTCTCATTATTTAGACTTTCCAAT-CAGT-AAT-ATATTT-TATA-TATAAAAA-CTTGTTC-TCTGTC------------TC-CTCTCT-------CTC-----T------C-TCTTAC-----------------------------T-TTTTTTGA---TTGCTAAAGGAGG-------GGG--------------GGGGGA---G---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCC-CCTCTC------------TTTCTCTCT---------------TTTC--CC-CCTTTC----C----------TT---------TTTT-TATTTTGGT--TTGCGAAAGG-GG-------GGGGG------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gtt-T-TG-T------G-CTTCCCT-CCTCTCCTCATCCTTATTTCTCTCTTT-------TCCCACCTTTTT--CC-TATGTT----TC------T-TATATAAG----TTTT-TTTTTTGATATTTGTGAAAGG-GG-------GGGGGGGGTGAGGTTGGTCCGGA---C---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : -T-TG-T--------CTTCCCC--CTCTC------------CCT-TCCCC-------CCT-----TTTT--CC-CCCTTT----TC------C-TTT---------TTTT-TGTTT--GT--TTGCGAAAGG-GGAGGGGGGGGG--------------TCCGGA---C---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCA-TAGCCCTAAGGA-TAAT-ACTATTTTTT--CCT-GGTGAATCT-TT-------AGAC----T-----AATA------ATTCAGTAA-------AAT---TT-TATAA-ATTC-T-TG-T-T----G---TCCCC-TCTCTC------------TCTCTgccttatacgatactatcgtctgtatggtaagaaaatttgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 33333 4444444 44444 1 2222 11 2 444444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1 2222222 1111 3333333333333333333333 1 222222222 222222222222 222222222222222 55555555555555555555555555 1111111 22222222222222 11111111111 11
lowQualScore : 3 2222222 88 6 7 22222 1 3333333 44444 8 3 0 0 1 3 2222 88 0 8 11 5 0 3 0 8 11 8 0 1 222222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 77 5 66666 5 5 99 99 3 6 99 5555555 6 2 7777 3333333333333333333333 1 4 4 5 888888888 4 222222222222 555555555555555 66 4 22222222222222222222222222 4 55 1 8 3333333 99999999999999 44444444444 4 777 55 4 4 4
lowQualScore : . ....... .. . . ..... . ....... ..... . . . . . . .... .. . . .. . . . . . .. . . . ............ .... . . . .. ................................................................................... .. . ..... . . .. .. . . .. ....... . . .... ...................... . . . . ......... . ............ ............... .. . .......................... . .. . . ....... .............. ........... . ... .. . . .
lowQualScore : 2 5555555 33 7 3 77777 0 0000000 88888 0 2 2 7 0 3 8888 88 8 0 22 6 6 2 4 0 22 0 8 4 666666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 7 44444 7 7 22 22 3 7 22 8888888 7 2 3333 3333333333333333333333 7 4 4 0 555555555 4 888888888888 222222222222222 11 4 99999999999999999999999999 4 55 6 0 0000000 00000000000000 22222222222 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-T-TG-T-T----G-CTTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-T-TG-T-T----G-CTTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTA--ATCGTCATACTAAAGTACAAGT---TTGTATCTGACGAAAATATCATAAGTTTGAGAG----GA-TCATCGTAC--A-AT-GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATGC-------AAG-TATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAGA-AA-GCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGG-ACG----AAGAATTGAT-ACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAAAACA---T-TTCAATCACCTTTCATTCTTTAAACT----AAT-TATT-CAGAATATTCAT-TG-C-T----GACTTCCCC-TTTTTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TT------T-TTT---------TTTTATTTTTTGGT--TTGCGAAAGC-AG-------GGG--------------TCCGGG---A---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATG--GTAA-TTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTGTCAACTCATCGTAC-----T-TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGCA---ATTAAG-TATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : -T-TG-T--------CTTCCCCCTCTCTC------------TTTCTCTCTTTTCCCCCCT-----TTTT--CC-TTTTTT----TT------T-TTTTTAAATTTTTTTT-TTTTTTGTT--TTGCGAAAGG-GG-------GGG--------------TCCCGA---C---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : AA-CTAAATAACTCTTAATAA-C-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTG-TAG----AAGGA-TAAC-Acccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CC-TTTATC----CC------C-CCT---------TTTT-TTTTTTGAT--TTGCCGAAAG-GG-------GGG--------------TTGGGG---CAGGT---CTC--G---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CACCAAAAGGAGG-------GGG--------------AGTGGAGGGC---C---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGAGTG-------TCATCGTACTTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTA--ATCGCCATACTATAGTGT-A-C---TTGCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCATCGTAC-----T-TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATGAA---ATTAAG-TATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAA-CAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACCA-TA-----AAGGG-TAAT-ATTAATTTTTTCCCC-GGTGAATCC-TTCA--TTA--AC----T-TTCAATTAACTTTCATTCTTTAGACT----TTT-CCTTCCGTAATATTA-T-T
gi|3 : taATAAATCTTAATGATGAAT--GTTAAGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA------------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA-----AAGGA-TCAT-ATTA-TTGTT--CCC-GGTGAATCCCTTCAC-TTAAT-C----TGTTCGA---CTTTCCATTC---ATAAT----AAT--GTT--ATAAATTTC-T-TGAT-T----G-TATTCTC-TTTATC------------TCTTTCTAT-------CTC-----TTTTTACC-TCTTTC----CCCCGTCTT-TTTT--------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCCGGA-------C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGaaaa
gi|4 : AAATTTAAATGATGCACTGATTAAG--ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA------------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCG-TAG----AAGGA-TAATTACT--TTTTT--CCCCGGTGAATCC-TCCAC-TTAAT-C----T-TTCGA---CTTTCCATTC---AG--T----AATATGTT--ATAA-ATTC-T-TG-T-T----G-TT--CTC-TTTTTC------------TCTTTCTAT-------TCT-----TTTT--CCCTCTTTCCCCCTC------TTTTT---------TTTT-TTTTTTGGT--ATGCGAAA-G-GG-------GGG--------------TCC-GA---C---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTG-TAG----A-----------CTGATTTTT--CCCTGGTGAATCC-TTCAC-TTAACTCAGCAT-TTCAATTATCTCTCATTATTTAGACTTTCCAAT-CAGT-AAT-ATATTT-TATA-TATAAAAA-CTTGTTC-TCTGTC------------TC-CTCTCT-------CTC-----T------C-TCTTAC-----------------------------T-TTTTTTGA---TTGCTAAAGGAGG-------GGG--------------GGGGGA---G---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCC-CCTCTC------------TTTCTCTCT---------------TTTC--CC-CCTTTC----C----------TT---------TTTT-TATTTTGGT--TTGCGAAAGG-GG-------GGGGG------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gtt-T-TG-T------G-CTTCCCT-CCTCTCCTCATCCTTATTTCTCTCTTT-------TCCCACCTTTTT--CC-TATGTT----TC------T-TATATAAG----TTTT-TTTTTTGATATTTGTGAAAGG-GG-------GGGGGGGGTGAGGTTGGTCCGGA---C---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : -T-TG-T--------CTTCCCC--CTCTC------------CCT-TCCCC-------CCT-----TTTT--CC-CCCTTT----TC------C-TTT---------TTTT-TGTTT--GT--TTGCGAAAGG-GGAGGGGGGGGG--------------TCCGGA---C---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCA-TAGCCCTAAGGA-TAAT-ACTATTTTTT--CCT-GGTGAATCT-TT-------AGAC----T-----AATA------ATTCAGTAA-------AAT---TT-TATAA-ATTC-T-TG-T-T----G---TCCCC-TCTCTC------------TCTCTgccttatacgatactatcgtctgtatggtaagaaaatttgt
blockSeqs : A CTTAATA AT G A TTTA T TGTCAAC TTATA G T A . ACTG GT G AA T C T C TT A A CAATGCAAAA ATAT C A AA AACAAGAGCAACTTTTAAAGAAGCAATTATA CA A GCCCT . T AA TC C C C CTCAGCA G A TTAA TTTAGACTTTCCAATCAGTA T . A A ATAAAAAC C CTCATCCTTATT TTTCCCCCCT TA C TTTTTTTTAAATTTT . AT G A AGGGGGG GGGGGTGAGGTTGG CAGGT A CCC CC . G T
blockSeqs : A . . . . C T TGTCAAC . . T T . AT T . CA T C T . TT . A CAAAGCAAAA . . . CA AACAAGAAGGCAACTTTAAAAGAAGCAAT . . G . . GA . T . C GAC . G TTAT TTTAGACTTTTCCTTCC A . . . TGT . . TCCCACCT . . CCCCGTCTTTTTT . . A A . GG GGGCC . . CC . . .
blockSeqs : . . T TG . . T A T . A . T . . GG . T . . . . AA ATCAAAACGCAACTTAAGGACCAATTTA . . G . . AT . . . C AC . G ATA ATAATAATGTT T . . . TGT . . CTC . . CCCCTCTTTTT . . G . . . CCTCA . . C . . .
blockSeqs : G . . . A . . . . . . . GG . T . . . . CA AACAAGAAGCAACTTA . . G . . A . . . . TC . A C AGTAATATGTT . . . . GC . . TCT . . TCTTATATAAG . . G . . . CC . . C . . .
blockSeqs : . . . TA GTAGAAAAAGTTT . . . . . . . . . . TC . . C AGTAAAATTTT . . . . TG . . CTC . . CCCCCT . . G . . . CC . . A . . .
blockSeqs : . . C CAATCTA . . . . . . . . C . . CCT . . TCCTTT . . G . . . GT . . C . . .
blockSeqs : . . . . . C . . . . . CTT . . G . . . CC . . . . . .
blockSeqs : . . . . . . . . . . . . . CC . . . . . .
blockSeqs : . . . . . C . . .
blockSeqCons : TG***** ***** AC** C* TC***** AGTAAAATGTT*********** TGC****** CCCTTT********************
originalCons : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTGTCGACTCATCGTAC--A-AT-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAANAC----T-TTCGATTACCTTTCATTCTTTAGACT----AAT-CGTT-CATAATATTC-T-TG-T-T----G-CTTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTC----TC------T-TTT---------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
finalCons : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTA--ATCGCCATACTATAGTGTAA-T---TTGTATCTGACGAAAATATCATAAATTTGAGTGTG-----TCATCGTAC-----T-TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCAC--ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAAT-ACTAATTTTT--CCC-GGTGAATCC-TTCAC-TTAATC-----T-TTCGATTACCTTTCATTCAGTAAAATGTT-----------ATAATATTC-T-TG-TTGC------TTCCCC-TCTCTC------------TCTCTCTCT-------CCC-----TTTT--CC-TCTTTCCCCTTT--------------------TTTT-TTTTTTGGT--TTGCGAAAGG-GG-------GGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11 22222222222 22222 22222 222222222 1 33333 11 2 444444444444 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 11 111 1111111 4444444444444444 22222222222222 22222 1111111 1111111 11 555555555555555555555555555555555555 1111111111 22222222222222 11111111111 11
lowQualScore : 3 2222222 88 99999999999 5 00000 00000 555555555 3 0 0 1 3 00000 88 0 8 11 5 0 3 0 8 11 8 0 1 222222222222 4444 5 0 5 44 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 77 5 66666 5 5 99 55 6 6 2 111 6666666 6 77 44 4444444444444444 5 99 99 77777777777777 5 5 66666 4 4444444 6666666 66 66 999999999999999999999999999999999999 4 55 5555555555 99999999999999 44444444444 4 777 55 4 4 4
lowQualScore : . ....... .. ........... . ..... ..... ......... . . . . . ..... .. . . .. . . . . . .. . . . ............ .... . . . .. ................................................................................... .. . ..... . . .. .. . . . ... ....... . .. .. ................ . .. .. .............. . . ..... . ....... ....... .. .. .................................... . .. .......... .............. ........... . ... .. . . .
lowQualScore : 2 5555555 33 00000000000 8 00000 00000 000000000 2 2 7 0 3 00000 88 8 0 22 6 6 2 4 0 22 0 8 4 666666666666 2222 7 1 0 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 7 44444 7 7 22 88 7 7 5 777 7777777 7 22 77 2222222222222222 0 44 44 00000000000000 0 0 44444 4 4444444 2222222 77 11 333333333333333333333333333333333333 4 55 1111111111 00000000000000 22222222222 0 000 55 4 4 4
consensus : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAAT--CGCCATACTATAGTGCAA-TTT---GTATCTGACGAAAATATCATAAATTTGAGNGTG-----TCA-----TCGTAC--T------TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCA---ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAA-TACTAATTTTT--CCC-GGTGAATCC-TTCACTT---AA-TC----T-TTCGATTACCTTTCAT----------------TCAGTAA-AAT-GTTAT----A-ATAT----TC-TTG-TTG-CTTCCCC-TCTCTCTCTC-------TCTCT-------CCCTTTT--CCT--CTTTCCCC------T-------TT-------T---------TTT-TTTTTTGGT--TTGCGAAA-------GG-GGGGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
Reference ( family-193 ) : ATCAAAATACATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTAGACTAAT--CGCCATACTATAGTGTAA-TTT---GTATCTGACGAAAATATCATAAATTTGAGTGTG-----TCA-----TCGTAC--T------TATCCTAGATTTAAACGANCCA-CCGATGTTGATAAATTTGAATGATGCAC--ATTAAG-TATCACCTT-TCCAATCATTTTGACTCGTAA-GTCTTTAAAA-TTGAATAACTCTTAATAA-C-AA-GCAAAAACTTGCCATAT----TTATGATCACT-TTTATCTTA-GAACAT-----A------------------A-------C-A---------------------A---------T-T-TA-----------TACAA--AACCG-TAG----AAGGA-TAA-TACTAATTTTT--CCC-GGTGAATCC-TTCACTT---AA-TC----T-TTCGATTACCTTTCAT----------------TCAGTAA-AAT-GTTAT----A-ATAT----TC-TTG-TTG-CTTCCCC-TCTCTCTCTC-------TCTCT-------CCCTTTT--CCT--CTTTCCCC------T-------TT-------T---------TTT-TTTTTTGGT--TTGCGAAA-------GG-GGGGG--------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTTG
gi|1 : ATCAAAATACATTCCAAAAATAGTA-------TTGTGGTAGCCATTTACTACTTGCTTTCAAAGTTCCAGTCGTTCTAGATTAAT--CGTCATACTAAAGTACAAGTTT---GTATCTGACGAAAATATCATAAGTTTGAGAGGA-----TCA-----TCGTACAAT------GATCC--------ACCGGGTCAGCCGGTGTTAATAAATTTGAATGATGC-------AAG-TATCACCTT-TCAAATCATTTTGACCCG-AA-GTTTTTAAAA-TTGAATAACTATTAATAAGA-AA-GCAAAAATTTATCAT-T----TTATGATCACT-TTTATCTGA-GAACAT-----A------------------A-------C-A---------------------A---------TGT-TA-----------TATAA--AACGG-ACG----AAGAATTGA-TACTAATTTTT--CCC-GGTGAATCC-ATCACTTTAAAA-CA----T-TTCAATCACCTTTCAT----------------TCTTTAA-ACTAATTATTCAGA-ATAT----TCATTG-CTGACTTCCCC-TTTTTCTCTC-------TCTCT-------CCCTTTT--CCT--CTTTCTTT------T-------TT-------T---------TTTATTTTTTGGT--TTGCGAAA-------GC-AGGGG--------------TCCGGG---A---C---CCC-TG---GA-CCCCCCCTCTGGGA-TCCGCC-CTTTG
gi|10 : AAATATATTCTAAAAATGTTACTTAATATTGTGGTAGCCATTTACTACCTGCTACCAAAGATCCAGGCGATCTAGGCTAATATTGCAATACTATGGT--AA-TTTATTGTATCTAACGAAAATATCATAAATTTGAGTGTG-----TCA-----TCGTAC--T------TATC
gi|11 : tTATCTGAC-AAAACATCATAAATTTGAGTGTG-----TCAACTCATCGTAC--T------TATCCTAGATTTAAATGAACCA-CCGATGTTGATACATTTGAATGATGCA---ATTAAG-TATC------TCC--------TGACTCG-AA-ATCTTTAt
gi|12 : -TTG-T---CTTCCCCCTCTCTCTTTC-------TCTCTTTTCCCCCCTTTTT--CCT--TTTTTTTT------T-------TT-------TTAAATTTTTTTT-TTTTTTGTT--TTGCGAAA-------GG-GGGGG--------------TCCCGA---C---C---CCC-TG---GG-CCCCCCCCCg
gi|13 : AA-CTAAATAACTCTTAATAA-C-AATGCAAAAACTTACCACAT----TTATGAACACT-TTTATCTTA-GAAAAT-----A------------------ACAAGAAGC-A---------------------A---------C-T-TA-----------TACTA--AGCTG-TAG----AAGGA-TAA-CAcccccttg
gi|14 : TTGCCATATATATTTATGATCACT-TTTATCGTG-GAACAT-----A------------------A-------C-A---------------------A---------
gi|15 : --CCT--TTATCCCC------C-------CT-------T---------TTT-TTTTTTGAT--TTGCCGAA-------AG-GGGGG--------------TTGGGG---CAGGT---CTC--G---GA------CCTCT-GTA-TCCGTT-CTTgaagcaattcatttagtaacatttgtttttatatataa
gi|16 : TTTGGT--CACCAAAA-------GGAGGGGG--------------AGTGGAGGGC---C---CCC-TG---GA---CCCCCTCT-AAA-TCCGCC-gg
gi|17 : taagATCAAAATACATTCTAGAA-TGTTA-------TTGCGGTAATTATTTACTTTTTGCTTCCAAAGTTCCAGactgaa
gi|19 : aGAAAATATCATAAATTTGA--GTG-----TCA-----TCGTAC--TTATATGTATCCTAGATTTA
gi|2 : AAAATTCATTCCAAAAATGTTA-------TTGTGGTAGCCATTTACTACTTGCTTCCAAAGTTCCAGTCGATCTTGACTAAT--CGCCATACTATAGTGT-A-CTT---GCATCTGACGAAAATATCATAAATTTTAGGGTGTCAACTCA-----TCGTAC--T------TATCCTAAATTTAAATGATCCA-CCGATGTTGATAAATTTGAATGATG-AA--ATTAAG-TATCACCTT-TGAAATCATTTTGACTCG-AA-GTATTTAAAA-CTGAATAACTCTTAATAA-CAAA-GCAAAAACTTACCTTAT----TTATGATCACT-TTTATA--A-GAAAATGTAGAA------------------A-------A-A---------------------G---------T-T-T----------------A--AACCA-TA-----AAGGG-TAA-TATTAATTTTTTCCCC-GGTGAATCC-TTCA-TT---AA--C----T-TTCAATTAACTTTCAT----------------TC
gi|3 : taATAAATCTTAATGATGAAT--GTTAAGGTACAACCTTGTCCCATCATT--GCCTTGTAACGTCGGTAACA-TTGAATA-CTCTTAATTA------------ACTTGCCATAT----TTATGATCACTCTTTATCTTA-GAA--T-----A------------------A-------C-A---------------------AGAAGGCAACT-T-TAAAAGAAGCAATTATAACAAACCGATA-----AAGGA-TCA-TATTA-TTGTT--CCC-GGTGAATCCCTTCACTT---AA-TC----TGTTCGA---CTTTCCAT----------------TCA-TAATAAT-GTTAT----A-AATT----TC-TTGATTG-TATTCTC-TTTATCTCTT-------TCTAT-------CTCTTTTTACCT--CTTTCCCCCGTCTTT-------TT-------TT--------TTT-TTTTTTGGT--ATGCGAAA--------G-GGGGG--------------TCCGGA-------C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCA-CCTTGtttagacttttccttccgtaatattattaaaa
gi|4 : AAATTTAAATGATGCACTGATTAAG--ATCACCTT-TCCA-TCATTTTGCCT-GTAC-GTCGGTAAAAATTGAATAACTCTTAATTA------------ACTTGCCATAT----TTATGATCACT-TTTATCTTG-GAACAT-----A------------------A-------C-AAGAGCAACTTTTAAAGAAGCAA---------T-TATA-----------TACAA--AACCG-TAG----AAGGA-TAATTACT--TTTTTC-CCC-GGTGAATCC-TCCACTT---AA-TC----T-TTCG---ACTTTCCAT----------------TCAGTAA-TAT-GTTAT----A-A-AT----TC-TTG-TTG---TTCTC-TTTTTCTCTT-------TCTAT-------TCTTTTTC-CCT--CTTTCCCCCTCTT-T-------TT-------T---------TTT-TTTTTTGGT--ATGCGAAA--------G-GGGGG--------------TCC-GA---C---C---CCC-TG---GACCCCCCCCTCT-GGA-TCCGCC-CTTc
gi|5 : CTTAAGAAC----------------------------------C-A---------------------A---------T-C-TA-----------TACAA--AACTG-TAG----A-----------CTGATTTTT--CCCTGGTGAATCC-TTCACTT---AACTCAGCAT-TTCAATTATCTCTCATTATTTAGACTTTCCAATCAGTAA-TAT-ATTTT----ATATATAAAAAC-TTG-TT--------C-TCTGTCTC-C-------TCTCT-------CTCT------CT--CTTAC--------------------------------------T-TTTTTTGA---TTGCTAAA-------GGAGGGGG--------------GGGGGA---G---T---CC---G---GA--CCCCCCTCT-GTA-TCCGCC-CTTgc
gi|6 : cataacaagaagcaaTTCCCC-CCTCTCTTTC-------TCTCT----------TTTC--CCC--CTTTCC----------------TT-------T---------TTT-TATTTTGGT--TTGCGAAA-------GG-GGGGGGG------------TCCGGA---C---C---CCC-TG---GA-CCCCCCCTCT-GGA-TCCGCC-CTTgg
gi|7 : gtt-TTG-T-G-CTTCCCT-CCTCTC-CTCATCCTTATTTCT-------CTCTTTT--CCCACCTTTTTCC------TATGTTTCTTATATAAGT---------TTT-TTTTTTGATATTTGTGAAA-------GG-GGGGGGGGGGTGAGGTTGGTCCGGA---C---CTCACCCATG---GT-ACCCCCCTCT-GGAGTCCGCCTCCTTGgtattacttgtactattgccaacatcattactcttaaagataatataaaattagtatggataaaga
gi|8 : -TTG-T---CTTCCCC----CTCTCCC-------TTCCC-------CCCTTTTTCCCC--CTTTTCCT------T-------TT-------T---------TTT-GTTT---GT--TTGCGAAAGGGGAGGGG-GGGGG--------------TCCGGA---C---C---CCC-TGCCCCC-CCCCCCCTCT-GGA-TCCGCC-CTT
gi|9 : ATGATCACT-TTTATCTTA-GAATAT-----ATCAAAACGCAACTTAAGGA-------CCA---------------------A---------T-T-TA-----------TACAA--AACCA-TAGCCCTAAGGA-TAA-TACTATTTTTT--CCT-GGTG----------------AA-TC----T-TTAGACTAA---TAAT----------------TCAGTAA-AAT-TTTAT----A-A-AT----TC-TTG-TTG---TCCCC-TCTCTCTCTC-------Tgccttatacgatactatcgtctgtatggtaagaaaatttgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCCGCTCCGATATTTTGTTACTTTGTAGCGACAACAAAATATCGGAGCGGATAAAGA