lowQualScore : 2222222222 333333333333333 111 1 1 333333333333333333 111 11 222222 11 222222222 1111 11 2222222222222 1111 222222 1 2222 55555555555 5555555555555 222 111111111111 22 222222 1 333333333333333333333
lowQualScore : 6 66 66 4 66 1 4 6666666666 5 222222222222222 444 5 4 2 66 4 4 0 77 888888888888888888 000 6 11 8 333333 11 555555555 6 22 4444 5 99 6 8 8 33 1 1 2 11 555 6666666666666 1 6 99 2222 888888 8 0 1111 44444444444 3333333333333 222 4 2 8 8 888 5 1 777777777777 22 99 1 0 1 22 666666 1 0 2 6 666666666666666666666 8
lowQualScore : . .. .. . .. . . .......... . ............... ... . . . .. . . . .. .................. ... . .. . ...... .. ......... . .. .... . .. . . . .. . . . .. ... ............. . . .. .... ...... . . .... ........... ............. ... . . . . ... . . ............ .. .. . . . .. ...... . . . . ..................... .
lowQualScore : 0 11 11 4 11 1 4 6666666666 7 444444444444444 000 6 4 2 11 4 4 0 99 333333333333333333 222 7 00 0 000000 00 000000000 0 00 2222 7 22 7 0 0 66 7 0 5 55 000 8888888888888 0 7 22 4444 000000 0 0 2222 77777777777 7777777777777 777 0 2 0 0 000 7 4 111111111111 77 77 2 1 7 22 000000 2 5 0 0 000000000000000000000 3
consensus : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTA--TGT-TGTG--ACCGGGG-TGTAGGCTA--CN------GAA-GCGA------CGAT--TCAGGTGGTCGAG--ATCAGTT-TTTGCA--CAAA-ATCT-CAATTTATGGATATAT--TT-TGCAG--G-A--AAACGTATGCTTAC--GGAAGAA-AGCAACAT--T-TGAAGAATA------TATG--GAAACAAA-----T---ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACTACCGTATGTTTATGACCAAA------TATTAGGACAACGCTTTGTTTAATCGTC--ACTTTTA--CGTGACCAAT-AA-TTACGTGCTA-TCT----GTAT-----AAT---GTTATACATA---CNCTGT----CAGTGAATAA--CCAACCGTGTTGAAAGACATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTAC-TGTTGTGAACGGGGTGTAAGCTACCGAATTCCTTT---T--ACACGTAAGTGCGGAAA---TA-TNATT---TA--TTCTTTAGTTTAGTGATA
Reference ( gi|2 ) : TCGGATATACCCCAACATGCGGGGT--GTAGGCTA--TGT-TGTG--ACCGGGG-TGTAAGCTA--CG------GAA-GCGA------AGAT--TACGGTGGTCGAG--ATCAGTT-TTGGCA--CAAA-ATCT-CAATTTATGGGTATAT--TT-TGTAG--G-A--AGTTGTATGCTTAC--GGAAGAA-AGCAACAT--T-TGAAGAATA------TATG--GAAACAAA-----T---ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTTTGACGATCGGGGCTAGTTTGGTACCACCGTATGTTTATGATCAAA------TATTAGAACAACGCTGTGTTTAATCGTC--ACTTTTA--CGTGACCCA--AA-TTACGTGCTA-TCT----GTAT-----TAT---GTTATACATA---CCCTGT----CAGTGAATAAAACCAATCGTGTTGAAAGATATCA-ACGAAA-AACCAA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTAAGCTACCGAATTCCTTT---T--ACATGAAAGCGCGGGAA---AA-TTATT---TA--TCGTTAAGTTTAGTGATA
gi|1 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTA--TGT-TGTG--ACCGGGG-CGTAGGCTG--CC------GAA-GCGA------CGAT--TCAGGTGGTCGAG--GTCAGTT-TTTGCA--CAAA-ATCT-ATATTTAAGGCTATAT--CT-TGGAG--G-A--AAATGTATGCCTAC--GGAAGAA-AGCAACAT--T-TGAAGAATA------TATG--GAAACAAA-----T---ATATCAACT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATGCCGACGATCGGGACTAGTTTGGTACAATCGTATGTTTGTGACCAAC------TATCAGAACAACGCTGTGTTTAATCGTC--ACTTTTA--CGTGACCAAT-AA-TTACGTGCTA-TCT----GTATACATGTATAAGGTTATACATA---TTCTGT----CAGTGAATAAATCCAATCGTGTTAAAAGATATCA-ACGAAA-AACCGA--TGT-TGTTCATGGGGTGTAG------------GCTACATGTTGTGCACGGGGTGTAAGCTACCGAATTTCTTCATGT--ACTAGTAAGCGCGGAAA---TA-TGGTTTAATA--TT-TTATATTTAGTGATA
gi|5 : acCGGGTATACCCCAACATGAGAGGT--GTAGGCTA--TGT-TGTG--ACCGGGT-TGTAACCTA--CT------AA---------------T--TCAGGTGGGCGAG--GTAAGTT-TTTGCA--CGAT-ATCT-CAATTCATGGGTATGT--TT-TGCAG--A-A--AAACATACGGTTATATGGAAGAA-AGCAGCAA--T-TAAAGAATACATTTATATG--AAAACAAAAAATGTGGGATAATCCCT----GTTAACTTTCTAGATTTATCAT-ATACAAC-TCAACAC-A-ATTCTGACGATCGGGAATAGTTTGTCAATACCGCAAGTCTATAATCAAATACATGTATTAGGACAACAGTTTATTTAATAGTC--ACTTTTA---ATTA--CA--AATTTACCTGCTgttctatgtgacatataccatctatctactctcagtgtatgcatatataggtacctgaaaaagtggaaagcctgcaacatacatagatcgtaagcacttaaaccccccccccccccccattttattgtcatcccattaaaaacaaatataaaac
gi|14 : cCAGGTACACCCCAACATGCGGGGT--GTAGGCTA--TGT-TGTG--ACCGGGG-TGTAGGCTA--CC------GAA-GCGA------CGAT--TCAGGTGGTCGAG--ATCAGTT-TTTGCA--CAAA-ATCT-CAATTTATGGATAt
gi|11 : acCAGGTATACCCCAACATGCGGGAT--GTAGGCTA--TGT-TATG--ACCGTGG-TGTAAGCTA--CATGTACCGAA-GCGA------AAAT--TCCGGTGGTCGAG------GTT-TTTGCA--CAAA-ATCT-CTATTT-----CA-----TT-TGCAG--A-A--AATTATATGCTTGC--AGAAGAA-AGCAACA
gi|18 : gCGAGTATACCCTAACATGCGGGGT--GTAGGCTA--TGT-TGAG--AACGGGG-TGTA
gi|9 : cACACCAACATGCAGGGT--GTAGACTA--TGT-TGTG--ACCGGGG-TGTAAGCTA--CC------GAA-GCGA------AAAT--TCTGGTGATCGAG--ATCAGAT-TTTGCA--C----ATCT-CAAATTATGGATATAT--TT--------------------TGCTTAC--GGTAGAA-AGCAACAT--T-TGAAGAATA------TATG--GAAACAAA-----T---ATATCCCCT----GTATACTGTCTAGTTTTATCAA-GCA
gi|13 : ATGCTAGGA--GTAGGCCA--TGC-TGGT--AAAGGGT-TGTAAACTAACCA------GAATGCGA------CGAT--T--GGTG-TCGG----TCAGTTATTTGCA--CAAA-ATCT-CAATTTATGGATATAT--TT-TGCA
gi|7 : gtatactagaCGGGGTCGATAGCTTA--TGTCTGTGGAACCTCGGCTGTAGGCTATCCG------GAA-GCAATGATCCAGATGGTA-GGTAGTCGAG--TT---TT-TTTACAACCAAATATCC-AAATTTATGG--ATAT--TT-GGCAA--GTA--AAATGTATTCCTA---GGAAGAAGAGCAACAT--TGGGAAGAATA------TATGAAGGAACAAA-----T---ATA-CTTCTGATCGTATCCTTTCTATGTTTATCAAGACAC--CGTCAACA
gi|3 : CGGGGT--GTAGGCTACCTGT-TGTG--A-TGGGG-TGTAGGCTC--CA------GAgca
gi|8 : gaaatcagacaaaacgaccggcctgtctgtgcaGGTCAAGGTATGATTT-TTGTC---CAAT-TTTTTCAATTCATAGATACATGATTATGTCGCTG-ATAAAACATATGTTTAC--AGAAGAA-AGC--CTTCAT-TAAGGAGTA------TATG--GACACATT-----T---GAATCGGTG----GTACATTTTCTAGTTTAATCAA-ATAC--C-TCGCCAT-A-ATGTAGACAAT-----CT-GTTTAGCACTAC----TGTTTA---------------ATTACGACTAAGCTTCGGTTTATCATC--ACCTTtttttgaagatgtaagtgcagaaatataacttattttctagtttagtgatagtctataatgtaacatacacaatccatgtgcgcggtatatgcagcagacacctgaaaaaggtggatcgctttacacgtacatacatatagatgttatttacacccccctttttttcaacctaatgaaaaataaatggagaacatgcatattatttcaagccaacatactatgatttcctcccgatcacttaataatcaactcgttctgcaaaagcagtttctactttctgtaatcttttgaatccgcgcagatactgatacattattacatgtagattcagaagtggtcattcaaaaacttaacaaagtagaaactggca
gi|20 : T-TTTGCA--CAAA-ATCT-CAATTTATGGATATAc
gi|4 : CCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAATAC-A-ATTCTGACGATCGTGGCTGCTTTGGCATTACCATACCTGTAT------A------T-TTAGGACAACGCTTTGTTTAATCGTC--ACATCTA--CATGACCAAT-AA-TTACGTGCTAGCCTAACAGTAT-----AAT---TTCATGCATA---CC-------------AATA---------GTATTGAAAGACATCA-ACGAAA-AATCA----------------------------------------GTGTTGTGCA-AGGGTGTATG----CGAATTTCTTT---C--ACATGTAATTGCAGAAATATAATTTATT---TATTTCCTTTAGTTTAGTGA
gi|6 : gTACACTTCCTAGTTTTATCAA-TTAT--C-TCAACACCATATTCTGACGATCGGGGCTAGTTTTGTACAACCGTATGTTTATGACAAAA------TATTAAAACAACTATTTGTTTAATCGTCTCATTTCTAAACTCGACCAA--AA-TTCCGTGCTA-TCT----GCAT-----ACG---GTTATACATATTACACTGTATGTCAGTGAATGATACCAACCGTGTTGAACGACATCA-ACGAAA-ATCAAA--TGT-TGTGTACGGGGTGTGATACATGCTGTGTGCTACATGCTACACAAGGGGTGTATGTTAACAAATTCCTTT---T--ACACAAACGTGTGGAAA---TA-TCATT---TA--Tatgttctaggtgacatatgcatgaataattcacatacacgcagtatatatgcacagatacttcaacagtggataacttacacgtatatt
gi|15 : atGACCGGGGCTAGT-------------ATGTTTATGATCAAA------TATTTGAACAACCCTGTATTTAATCCTC--ACTTTTA--CGTGA-CCATTAA-TTACGTGTTA-TCT----CTAT-----tat
gi|17 : ttatctAAAGATATCA-ACGAAA-AGCCAA--TGT-TGTGCATGGGGTGTAG------------GCT-CATGTTGTGTACCTGGTGTa
gi|3 : GAAATCAGACAAAACGACCGGCCTGTCTGTGCACGGGGTGTAG------------GCTACCTGTTGTG-ATGGGGTGTAGGCT-CCAGAT---TTT---TGAAGATGTAAGTGCAGAAA---TA-TAACT---TA--TTTTCTAGTTTAGTGATAtat
gi|9 : A--TGT-TGTGACCGGGGTGTAA------------GCTACgtctataatgtaacatacacaatccatgtgcgcggtatatgcagcagacacctgaaaaaggtggatcgctttacacgtacatacatatagatgttatttacacccccctttttttcaacctaatgaaaaataaatggagaacatgcatattatttcaagccaacatactatgatttcctcccgatcacttaataatcaactcgttctgcaaaagcagtttctactttctgtaatcttttgaatccgcgcagatactgatacattattacatgtagattcagaagtggtcattcaaaaacttaacaaagtagaaactggca
gi|14 : acaccaacatgcagggtgtagactA--TGT-TGTGACCGGGGTGTAG------------GCTACcgaagcgaaaattctggtgatcgagatcagattttgcacatctcaaattatggatatattttgcttacggtagaaagcaacatttgaagaatatatggaaacaaatatatcccctgtatactgtctagttttatcaagca
gi|9 : accaggtacaccccaacatgcggggtgtaggctTGCA--GGGTGTAG------------ACTA--TGTTGTGACCGGGGTGTAAGCTACCGAAcgaagcgacgattcaggtggtcgagatcagtttttgcacaaaatctcaatttatggata
gi|14 : acaccaacaCGGGGTGTAG------------GCTA--TGTTGTGACCGGGGTGTAGGCTACCGAAgcgaaaattctggtgatcgagatcagattttgcacatctcaaattatggatatattttgcttacggtagaaagcaacatttgaagaatatatggaaacaaatatatcccctgtatactgtctagttttatcaagca
gi|11 : accaggtacaccccaacatgCGGGATGTAG------------GCTA--TGTTATGACCGTGGTGTAAGCTACgcgacgattcaggtggtcgagatcagtttttgcacaaaatctcaatttatggata
gi|18 : gcaggtataccccaacatgCGGGGTGTAG------------GCTA--TGTTGAGAACGGGGTGTAatgtaccgaagcgaaaattccggtggtcgaggtttttgcacaaaatctctatttcatttgcagaaaattatatgcttgcagaagaaagcaaca
gi|5 : ccgagtataccctaacatgGAGGTGTAG------------GCTA--TGTTGTGACCGGGTTGTAACCTACT-AATTC
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CCCCCCCTCTTCTAAAAATATGAAAAATAAAAAATAACATGACAATAGCTCAAAAGTAAGTGTGATTTTCCGCCCAATCACTTCCATCAAATCGTTCATGTCACGATATCGTTTTTACTTTGGCAGCTTTTGGAGATGGGCCTAAATTGGTACATATATTAAGTATCTCACATGTGGCCATCTCAAA
Unaligned ( gi|12 ): TTTCTACTTTTAGAAAGCTTTTAAAGTGACTACTTGTGATATACTAATATATGTACATACATGTATTTCATTTAGTATCTCAGAAGTGGTCATTTTAAAAGCCTGCAACAAGTAGAAACTGAC
Unaligned ( gi|16 ): AGTGGTCATCTCAAAAGCTTGCAGAATATAGAAATAAACTGACTATGCAGAACAAGTTATGAAGGTGAT
Unaligned ( gi|19 ): ATACATTAGTATGATTTTTTTCCTGTTAGAATCCCAAA
Alignments
lowQualScore : 111111 11 111111 11 111111 111 11111 1111 111111 1111 3333333333 111 222222 33333333 2 55555555555555555 111111 2222222 1
lowQualScore : 66 4 66 4 444444 33 1 5 4 3 66 9 666 4 777 4 55 111111 0 2 11 555 77 5 99 6 999999 99 111 66666 3 2222 5 77 5 6 6 0 0 4 0 5555 666666 1 77 99 7 8 7777 4444444444 777 444444 99999999 4 2 6 6 0 99 6 3 2 6 11111111111111111 4 5 1 6 999999 4 1 1 8 7777777 0
lowQualScore : .. . .. . ...... .. . . . . .. . ... . ... . .. ...... . . .. ... .. . .. . ...... .. ... ..... . .... . .. . . . . . . . .... ...... . .. .. . . .... .......... ... ...... ........ . . . . . .. . . . . ................. . . . . ...... . . . . ....... .
lowQualScore : 11 4 11 4 444444 88 0 0 5 2 11 6 222 0 000 0 55 555555 8 0 99 000 99 7 22 7 222222 22 777 77777 5 1111 0 99 7 7 7 1 4 0 7 6666 444444 3 99 22 3 0 0000 5555555555 555 888888 22222222 2 2 7 7 7 22 7 7 5 7 00000000000000000 0 6 4 4 000000 6 4 0 0 2222222 0
consensus : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA--CCGAA-GCGACGATTCAGGTGGTCG--AGGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAGGCTACGTGTTGTG----N------AC----GGGGTGTAAGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATT------TTTTA-GTTTAGTGATA
Reference ( family-1842 ) : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAGGC------TA--CNGAA-GCGACGATTCAGGTGGTCG--AGAT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACTACCGTATGTTTATGACCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACNC----TGTCAGTGAAT--A--A--CCAACCGTGTTGAAAGACATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAGGCTAC-TGTTGTG----A------AC----GGGGTGTAAGCTACCGAATTCCTTT---T--ACACGTAAGTGCGGAAATATNATTT-ATT------CTTTA-GTTTAGTGATA
gi|1 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-CGTAGGC------TG--CCGAA-GCGACGATTCAGGTGGTCG--AGGT-C-AGTT-TTTGCACAA---AATCT-A--TATTTAAGGCTA------TATCTTGGAGG-AAAATGTATGCC--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCAACT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATGCCGACGATCGGGACTAGTTTGGTACAATCGTATGTTTGTGACCAAC------TATCAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATACATGTATAAGGTTATACA---TATTC----TGTCAGTGAAT--A--AATCCAATCGTGTTAAAAGATATCA-ACGAAA-AACCGA--TGT-TGTTCATGGGGTGTAGGCTACATGTTGTG----C------AC----GGGGTGTAAGCTACCGAATTTCTTCATGT--ACTAGTAAGCGCGGAAATATGGTTTAATA------TTTTATATTTAGTGATA
gi|11 : acCAGGTATACCCCAACATGCGGGAT--GTAGGCTATGT-TATG--ACCGTGG-TGTAAGCTACATGTA--CCGAA-GCGAAAATTCCGGTGGTCG--AG------GTT-TTTGCACAA---AATCT-C--TATTT-----CA---------TTTGCAGA-AAATTATATGCT--TGCAGAAGAA-AGCAACAgttctatgtgacatataccatctatctactctcagtgtatgcatatataggtacctgaaaaagtggaaagcctgcaacatacatagatcgtaagcacttaaaccccccccccccccccattttattgtcatcccattaaaaacaaatataaaac
gi|13 : gGTATACT--AGAATGCTAGGA--GTAGGCCATGC-TGGT--AAAGGGT-TGTAAAC------TAACCAGAATGCGACGATT--GGTG-TCG--G--T-C-AGTTATTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCA
gi|14 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAGGC------TA--CCGAA-GCGACGATTCAGGTGGTCG--AGAT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------
gi|15 : acTCTGAC---CGGGGCTAGT-------------ATGTTTATGATCAAA------TATTTGAACAACCCTGTATTTAATCC--TCACTTTT--ACGTGACCATTAATTACGTGTTA-TCT----CTATA-
gi|17 : ttaAAAGATATCA-ACGAAA-AGCCAA--TGT-TGTGCATGGGGTGTAGGCTCA-TGTTGTG----T------AC----CTGGTGT
gi|18 : CGAGTATACCCTAACATGCGGGGT--GTAGGCTATGT-TGAG--AACGGGG-TGTAtat
gi|2 : cCGGATATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA--CGGAA-GCGAAGATTACGGTGGTCG--AGAT-C-AGTT-TTGGCACAA---AATCT-C--AATTTATGGGTA------TATTTTGTAGG-AAGTTGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTTTGACGATCGGGGCTAGTTTGGTACCACCGTATGTTTATGATCAAA------TATTAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCCA-AATTACGTGCTA-TCT----GTATT-AT-------GTTATACA---TACCC----TGTCAGTGAATAAA--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCAA--TGT-TGTGCACGGGGTGTAGGCTACGTGTTGTG----C------AC----GGGGTGTAAGCTACCGAATTCCTTT---T--ACATGAAAGCGCGGGAAAATTATTT-ATC------GTTAA-GTTTAGTGATA
gi|20 : tT-TTTGCACAA---AATCT-C--AATTTATGGATA------TA
gi|3 : GAAATCAGACAAAACGACCGGCCTGTCTGTGCACGGGGTGTAGGCTACCTGTTGTG----A-------T----GGGGTGTAGGCT-CCAGATT---TT---TGAAGATGTAAGTGCAGAAATATAACTT-ATT------TTCTA-GTTTAGTGATA
gi|4 : CCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAATAC-A-ATTCTGACGATCGTGGCTGCTTTGGCATTACCATACCTGTAT------A------T-TTAGGACAACGCTTTGTTTAATCG--TCACATCT--ACATGACCAATAATTACGTGCTAGCCTAACAGTATA-AT-------TTCATGCA---TACC-------------AAT--A-----------GTATTGAAAGACATCA-ACGAAA-AATCAG--TGT-TGTGCA-AGGGTGTA----------TGCG----A------A-----------------------TTTCTTT---C--ACATGTAATTGCAGAAATATAATTT-ATTTATTTCCTTTA-GTTTAGTGAgtctataatgtaacatacacaatccatgtgcgcggtatatgcagcagacacctgaaaaaggtggatcgctttacacgtacatacatatagatgttatttacacccccctttttttcaacctaatgaaaaataaatggagaacatgcatattatttcaagccaacatactatgatttcctcccgatcacttaataatcaactcgttctgcaaaagcagtttctactttctgtaatcttttgaatccgcgcagatactgatacattattacatgtagattcagaagtggtcattcaaaaacttaacaaagtagaaactggca
gi|5 : gCGGGTATACCCCAACATGAGAGGT--GTAGGCTATGT-TGTG--ACCGGGT-TGTAACC------TA--CTAA---------TTCAGGTGGGCG--AGGT-A-AGTT-TTTGCACGA---TATCT-C--AATTCATGGGTA------TGTTTTGCAGA-AAAACATACGGTTATATGGAAGAA-AGCAGCAA--T-TAAAGAATACATTTATATG--AAAACAAAAAATGTGGGATAATCCCT----GTTAACTTTCTAGATTTATCAT-ATACAAC-TCAACAC-A-ATTCTGACGATCGGGAATAGTTTGTCAATACCGCAAGTCTATAATCAAATACATGTATTAGGACAACAGTTTATTTAATAG--TCACTTTT--A-ATTACAAAT--TTACCTGCTatgttctaggtgacatatgcatgaataattcacatacacgcagtatatatgcacagatacttcaacagtggataacttacacgtatatt
gi|6 : cTACACTTCCTAGTTTTATCAA-TTAT--C-TCAACACCATATTCTGACGATCGGGGCTAGTTTTGTACAACCGTATGTTTATGACAAAA------TATTAAAACAACTATTTGTTTAATCGTCTCATTTCTAAACTCGACCAA-AATTCCGTGCTA-TCT----GCATA-CG-------GTTATACATATTACACTGTATGTCAGTGAAT--GATA--CCAACCGTGTTGAACGACATCA-ACGAAA-ATCAAA--TGT-TGTGTACGGGGTGT--GATACATGCTGTGTGCTACATGCTACACAAGGGGTGTATGTTAACAAATTCCTTT---T--ACACAAACGTGTGGAAATATCATTT-ATT------t
gi|7 : atCGGGGTCGATAGCTTATGTCTGTGGAACCTCGGCTGTAGGC------TATCCGGAA-GCAATGATCCAGATGGTAGGTAG-T-CGAGTT-TTTTTACAACCAAATAT-CCAAATTTATGGATA------T--TTGGCAAGTAAAATGTATTCC--TA-GGAAGAAGAGCAACAT--TGGGAAGAA------TATATGAAGGAAC---AAAT-----ATA-CTTCTGATCGTATCCTTTCTATGTTTATCAAGACAC--CGTCAACAat
gi|8 : GGTCA--AGGTAT-GATT-TTTGTCCAA---TTTTTTC--AATTCATAGATACATGATTATGTCGCTGATAAAACATATGTT--TACAGAAGAA-AGC--CTTCAT-TAAGGAG------TATATG--GACAC---ATTT-----GAATCGGTG----GTACATTTTCTAGTTTAATCAA-ATAC--C-TCGCCAT-A-ATGTAGACAAT-----CT-GTTTAGCACTAC----TGTTTA---------------ATTACGACTAAGCTTCGGTTTATCA--TCACCTTgca
gi|9 : ACACCAACATGCAGGGT--GTAGACTATGT-TGTG--ACCGGGG-TGTAAGC------TA--CCGAA-GCGAAAATTCTGGTGATCG--AGAT-C-AGAT-TTTGCAC------ATCT-C--AAATTATGGATA------TATTT---------------TGCT--TACGGTAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTATACTGTCTAGTTTTATCAA-GCAc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCCCCCTCTTCTAAAAATATGAAAAATAAAAAATAACATGACAATAGCTCAAAAGTAAGTGTGATTTTCCGCCCAATCACTTCCATCAAATCGTTCATGTCACGATATCGTTTTTACTTTGGCAGCTTTTGGAGATGGGCCTAAATTGGTACATATATTAAGTATCTCACATGTGGCCATCTCAAA
Unaligned ( gi|12 ): TTTCTACTTTTAGAAAGCTTTTAAAGTGACTACTTGTGATATACTAATATATGTACATACATGTATTTCATTTAGTATCTCAGAAGTGGTCATTTTAAAAGCCTGCAACAAGTAGAAACTGAC
Unaligned ( gi|16 ): AGTGGTCATCTCAAAAGCTTGCAGAATATAGAAATAAACTGACTATGCAGAACAAGTTATGAAGGTGAT
Unaligned ( gi|19 ): ATACATTAGTATGATTTTTTTCCTGTTAGAATCCCAAA
Alignments
lowQualScore : 111111 11 111111 11 111111 111 11111 1111 111111 1111 3333333333 111 222222 33333333 44444444444444444 111111 222222 1
lowQualScore : 66 4 66 4 444444 5 11 5 4 3 4 0 666 4 777 4 55 111111 0 2 11 555 77 5 99 6 999999 99 111 66666 3 2222 5 77 5 6 6 0 0 3 0 3333 666666 1 77 99 7 8 7777 4444444444 777 444444 99999999 0 0 6 6 6 2 99 6 3 3 3 2 11111111111111111 4 66 6 999999 4 1 1 8 888888 0
lowQualScore : .. . .. . ...... . .. . . . . . ... . ... . .. ...... . . .. ... .. . .. . ...... .. ... ..... . .... . .. . . . . . . . .... ...... . .. .. . . .... .......... ... ...... ........ . . . . . . .. . . . . . ................. . .. . ...... . . . . ...... .
lowQualScore : 11 4 11 4 444444 0 99 0 5 2 4 9 222 0 000 0 55 555555 8 0 99 000 99 7 22 7 222222 22 777 77777 5 1111 0 99 7 7 7 1 4 0 7 7777 444444 3 99 22 3 0 0000 5555555555 555 000000 22222222 8 3 7 7 0 2 22 7 7 2 2 2 22222222222222222 4 44 4 000000 6 4 0 0 888888 0
consensus : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAGGCTACGTGTTGTGCAC--------------GGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
Reference ( family-1842 ) : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAGGCTACGTGTTGTGNAC--------------GGGGTGTAAGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
gi|1 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-CGTAGGC------TG-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-A--TATTTAAGGCTA------TATCTTGGAGG-AAAATGTATGCC--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCAACT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATGCCGACGATCGGGACTAGTTTGGTACAATCGTATGTTTGTGACCAAC------TATCAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATACATGTATAAGGTTATACA---TATTC----TGTCAGTGAAT--A--AATCCAATCGTGTTAAAAGATATCA-ACGAAA-AACCGA--TGT-TGTTCATGGGGTGTAGGCTACATGTTGTGCAC--------------GGGGTGTAAGCTACCGAATTTCTTCATGT--ACTAGTAAGCGCGGAAATATGGTTTAATAT------TTTATATTTAGTGATA
gi|11 : acCAGGTATACCCCAACATGCGGGAT--GTAGGCTATGT-TATG--ACCGTGG-TGTAAGCTACATGTA-CC--GAA-GCGAAAATTCCGGTGGTCGA-G------GTT-TTTGCACAA---AATCT-C--TATTT-----CA---------TTTGCAGA-AAATTATATGCT--TGCAGAAGAA-AGCAACAgttctatgtgacatataccatctatctactctcagtgtatgcatatataggtacctgaaaaagtggaaagcctgcaacatacatagatcgtaagcacttaaaccccccccccccccccattttattgtcatcccattaaaaacaaatataaaac
gi|13 : gGTATACT--AGAATGCTAGGA--GTAGGCCATGC-TGGT--AAAGGGT-TGTAAAC------TAACCA-GAATGCGACGATT--GGTG-TCG---GT-C-AGTTATTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCA
gi|14 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAGGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GAT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------
gi|15 : acTCTGAC---CGGGGCTAGT-------------ATGTTTATGATCAAA------TATTTGAACAACCCTGTATTTAATCC--TCACTTTT--ACGTGACCATTAATTACGTGTTA-TCT----CTATA-
gi|17 : ttaAAAGATATCA-ACGAAA-AGCCAA--TGT-TGTGCATGGGGTGTAGGCT-CATGTTGTGTAC--------------CTGGTGT
gi|18 : CGAGTATACCCTAACATGCGGGGT--GTAGGCTATGT-TGAG--AACGGGG-TGTAtat
gi|2 : cCGGATATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CG--GAA-GCGAAGATTACGGTGGTCGA-GAT-C-AGTT-TTGGCACAA---AATCT-C--AATTTATGGGTA------TATTTTGTAGG-AAGTTGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTTTGACGATCGGGGCTAGTTTGGTACCACCGTATGTTTATGATCAAA------TATTAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCCA-AATTACGTGCTA-TCT----GTATT-AT-------GTTATACA---TACCC----TGTCAGTGAATAAA--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCAA--TGT-TGTGCACGGGGTGTAGGCTACGTGTTGTGCAC--------------GGGGTGTAAGCTACCGAATTCCTTT---T--ACATGAAAGCGCGGGAAAATTATTT-ATCG------TTAA-GTTTAGTGATA
gi|20 : tT-TTTGCACAA---AATCT-C--AATTTATGGATA------TA
gi|3 : GAAATCAGACAAAACGACCGGCCTGTCTGTGCACGGGGTGTAGGCTACCTGTTGTG-AT--------------GGGGTGTAGGCT-CCAGATT---TT---TGAAGATGTAAGTGCAGAAATATAACTT-ATTT------TCTA-GTTTAGTGATA
gi|4 : CCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAATAC-A-ATTCTGACGATCGTGGCTGCTTTGGCATTACCATACCTGTAT------A------T-TTAGGACAACGCTTTGTTTAATCG--TCACATCT--ACATGACCAATAATTACGTGCTAGCCTAACAGTATA-AT-------TTCATGCA---TACC-------------AAT--A-----------GTATTGAAAGACATCA-ACGAAA-A----A--T-------CA---------------GTGTTGTGCA---------------AGGGTGTATGC----GAATTTCTTT---C--ACATGTAATTGCAGAAATATAATTT-ATTTATTTCCTTTA-GTTTAGTGAgtctataatgtaacatacacaatccatgtgcgcggtatatgcagcagacacctgaaaaaggtggatcgctttacacgtacatacatatagatgttatttacacccccctttttttcaacctaatgaaaaataaatggagaacatgcatattatttcaagccaacatactatgatttcctcccgatcacttaataatcaactcgttctgcaaaagcagtttctactttctgtaatcttttgaatccgcgcagatactgatacattattacatgtagattcagaagtggtcattcaaaaacttaacaaagtagaaactggca
gi|5 : gCGGGTATACCCCAACATGAGAGGT--GTAGGCTATGT-TGTG--ACCGGGT-TGTAACC------TA-CT--AA---------TTCAGGTGGGCGA-GGT-A-AGTT-TTTGCACGA---TATCT-C--AATTCATGGGTA------TGTTTTGCAGA-AAAACATACGGTTATATGGAAGAA-AGCAGCAA--T-TAAAGAATACATTTATATG--AAAACAAAAAATGTGGGATAATCCCT----GTTAACTTTCTAGATTTATCAT-ATACAAC-TCAACAC-A-ATTCTGACGATCGGGAATAGTTTGTCAATACCGCAAGTCTATAATCAAATACATGTATTAGGACAACAGTTTATTTAATAG--TCACTTTT--A-ATTACAAAT--TTACCTGCTatgttctaggtgacatatgcatgaataattcacatacacgcagtatatatgcacagatacttcaacagtggataacttacacgtatatt
gi|6 : cTACACTTCCTAGTTTTATCAA-TTAT--C-TCAACACCATATTCTGACGATCGGGGCTAGTTTTGTACAACCGTATGTTTATGACAAAA------TATTAAAACAACTATTTGTTTAATCGTCTCATTTCTAAACTCGACCAA-AATTCCGTGCTA-TCT----GCATA-CG-------GTTATACATATTACACTGTATGTCAGTGAAT--GATA--CCAACCGTGTTGAACGACATCA-ACGAAA-ATCAAA--TGT-TGTGTACGGGGTGT--GATACATGCTGTGTGCTACATGCTACACAAGGGGTGTATGTTAACAAATTCCTTT---T--ACACAAACGTGTGGAAATATCATTT-ATTt
gi|7 : atCGGGGTCGATAGCTTATGTCTGTGGAACCTCGGCTGTAGGC------TA-TCCGGAA-GCAATGATCCAGATGGTAGGTAGT-CGAGTT-TTTTTACAACCAAATAT-CCAAATTTATGGATA------T--TTGGCAAGTAAAATGTATTCC--TA-GGAAGAAGAGCAACAT--TGGGAAGAA------TATATGAAGGAAC---AAAT-----ATA-CTTCTGATCGTATCCTTTCTATGTTTATCAAGACAC--CGTCAACAat
gi|8 : GGTCAA-GGTAT-GATT-TTTGTCCAA---TTTTTTC--AATTCATAGATACATGATTATGTCGCTGATAAAACATATGTT--TACAGAAGAA-AGC--CTTCAT-TAAGGAG------TATATG--GACAC---ATTT-----GAATCGGTG----GTACATTTTCTAGTTTAATCAA-ATAC--C-TCGCCAT-A-ATGTAGACAAT-----CT-GTTTAGCACTAC----TGTTTA---------------ATTACGACTAAGCTTCGGTTTATCA--TCACCTTgca
gi|9 : ACACCAACATGCAGGGT--GTAGACTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGAAAATTCTGGTGATCGA-GAT-C-AGAT-TTTGCAC------ATCT-C--AAATTATGGATA------TATTT---------------TGCT--TACGGTAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTATACTGTCTAGTTTTATCAA-GCAc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCCCCCTCTTCTAAAAATATGAAAAATAAAAAATAACATGACAATAGCTCAAAAGTAAGTGTGATTTTCCGCCCAATCACTTCCATCAAATCGTTCATGTCACGATATCGTTTTTACTTTGGCAGCTTTTGGAGATGGGCCTAAATTGGTACATATATTAAGTATCTCACATGTGGCCATCTCAAA
Unaligned ( gi|12 ): TTTCTACTTTTAGAAAGCTTTTAAAGTGACTACTTGTGATATACTAATATATGTACATACATGTATTTCATTTAGTATCTCAGAAGTGGTCATTTTAAAAGCCTGCAACAAGTAGAAACTGAC
Unaligned ( gi|16 ): AGTGGTCATCTCAAAAGCTTGCAGAATATAGAAATAAACTGACTATGCAGAACAAGTTATGAAGGTGAT
Unaligned ( gi|19 ): ATACATTAGTATGATTTTTTTCCTGTTAGAATCCCAAA
Alignments
lowQualScore : 111111 11 111111 11 111111 111 11111 1111 111111 1111 3333333333 111 222222 33333333 333333333333 111111 222222 1
lowQualScore : 66 4 66 4 444444 5 11 5 4 3 4 0 666 4 777 4 55 111111 0 2 11 555 77 5 99 6 999999 99 111 66666 3 2222 5 77 5 6 6 0 0 3 0 3333 666666 1 77 99 7 8 7777 4444444444 777 444444 99999999 0 0 6 6 6 2 99 6 3 444444444444 3 2 1 5 1 66 6 999999 4 1 1 8 888888 0
lowQualScore : .. . .. . ...... . .. . . . . . ... . ... . .. ...... . . .. ... .. . .. . ...... .. ... ..... . .... . .. . . . . . . . .... ...... . .. .. . . .... .......... ... ...... ........ . . . . . . .. . . ............ . . . . . .. . ...... . . . . ...... .
lowQualScore : 11 4 11 4 444444 0 99 0 5 2 4 9 222 0 000 0 55 555555 8 0 99 000 99 7 22 7 222222 22 777 77777 5 1111 0 99 7 7 7 1 4 0 7 7777 444444 3 99 22 3 0 0000 5555555555 555 000000 22222222 8 3 7 7 0 2 22 7 7 222222222222 2 2 0 2 0 44 4 000000 6 4 0 0 888888 0
consensus : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
Reference ( family-1842 ) : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
gi|1 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-CGTAGGC------TG-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-A--TATTTAAGGCTA------TATCTTGGAGG-AAAATGTATGCC--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCAACT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATGCCGACGATCGGGACTAGTTTGGTACAATCGTATGTTTGTGACCAAC------TATCAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATACATGTATAAGGTTATACA---TATTC----TGTCAGTGAAT--A--AATCCAATCGTGTTAAAAGATATCA-ACGAAA-AACCGA--TGT-TGTTCATGGGGTGTAG------------GCTACATGTTGTGCACGGGGTGTAAGCTACCGAATTTCTTCATGT--ACTAGTAAGCGCGGAAATATGGTTTAATAT------TTTATATTTAGTGATA
gi|11 : acCAGGTATACCCCAACATGCGGGAT--GTAGGCTATGT-TATG--ACCGTGG-TGTAAGCTACATGTA-CC--GAA-GCGAAAATTCCGGTGGTCGA-G------GTT-TTTGCACAA---AATCT-C--TATTT-----CA---------TTTGCAGA-AAATTATATGCT--TGCAGAAGAA-AGCAACAgttctatgtgacatataccatctatctactctcagtgtatgcatatataggtacctgaaaaagtggaaagcctgcaacatacatagatcgtaagcacttaaaccccccccccccccccattttattgtcatcccattaaaaacaaatataaaac
gi|13 : gGTATACT--AGAATGCTAGGA--GTAGGCCATGC-TGGT--AAAGGGT-TGTAAAC------TAACCA-GAATGCGACGATT--GGTG-TCG---GT-C-AGTTATTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCA
gi|14 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAGGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GAT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------
gi|15 : acTCTGAC---CGGGGCTAGT-------------ATGTTTATGATCAAA------TATTTGAACAACCCTGTATTTAATCC--TCACTTTT--ACGTGACCATTAATTACGTGTTA-TCT----CTATA-
gi|17 : ttaAAAGATATCA-ACGAAA-AGCCAA--TGT-TGTGCATGGGGTGTAG------------GCT-CATGTTGTGTACCTGGTGT
gi|18 : CGAGTATACCCTAACATGCGGGGT--GTAGGCTATGT-TGAG--AACGGGG-TGTAtat
gi|2 : cCGGATATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CG--GAA-GCGAAGATTACGGTGGTCGA-GAT-C-AGTT-TTGGCACAA---AATCT-C--AATTTATGGGTA------TATTTTGTAGG-AAGTTGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTTTGACGATCGGGGCTAGTTTGGTACCACCGTATGTTTATGATCAAA------TATTAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCCA-AATTACGTGCTA-TCT----GTATT-AT-------GTTATACA---TACCC----TGTCAGTGAATAAA--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCAA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTAAGCTACCGAATTCCTTT---T--ACATGAAAGCGCGGGAAAATTATTT-ATCG------TTAA-GTTTAGTGATA
gi|20 : tT-TTTGCACAA---AATCT-C--AATTTATGGATA------TA
gi|3 : GAAATCAGACAAAACGACCGGCCTGTCTGTGCACGGGGTGTAG------------GCTACCTGTTGTG-ATGGGGTGTAGGCT-CCAGATT---TT---TGAAGATGTAAGTGCAGAAATATAACTT-ATTT------TCTA-GTTTAGTGATA
gi|4 : CCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAATAC-A-ATTCTGACGATCGTGGCTGCTTTGGCATTACCATACCTGTAT------A------T-TTAGGACAACGCTTTGTTTAATCG--TCACATCT--ACATGACCAATAATTACGTGCTAGCCTAACAGTATA-AT-------TTCATGCA---TACC-------------AAT--A-----------GTATTGAAAGACATCA-ACGAAA-A----A--T-------CA---------------------------GTGTTGTGCA-AGGGTGTATGC----GAATTTCTTT---C--ACATGTAATTGCAGAAATATAATTT-ATTTATTTCCTTTA-GTTTAGTGAgtctataatgtaacatacacaatccatgtgcgcggtatatgcagcagacacctgaaaaaggtggatcgctttacacgtacatacatatagatgttatttacacccccctttttttcaacctaatgaaaaataaatggagaacatgcatattatttcaagccaacatactatgatttcctcccgatcacttaataatcaactcgttctgcaaaagcagtttctactttctgtaatcttttgaatccgcgcagatactgatacattattacatgtagattcagaagtggtcattcaaaaacttaacaaagtagaaactggca
gi|5 : gCGGGTATACCCCAACATGAGAGGT--GTAGGCTATGT-TGTG--ACCGGGT-TGTAACC------TA-CT--AA---------TTCAGGTGGGCGA-GGT-A-AGTT-TTTGCACGA---TATCT-C--AATTCATGGGTA------TGTTTTGCAGA-AAAACATACGGTTATATGGAAGAA-AGCAGCAA--T-TAAAGAATACATTTATATG--AAAACAAAAAATGTGGGATAATCCCT----GTTAACTTTCTAGATTTATCAT-ATACAAC-TCAACAC-A-ATTCTGACGATCGGGAATAGTTTGTCAATACCGCAAGTCTATAATCAAATACATGTATTAGGACAACAGTTTATTTAATAG--TCACTTTT--A-ATTACAAAT--TTACCTGCTatgttctaggtgacatatgcatgaataattcacatacacgcagtatatatgcacagatacttcaacagtggataacttacacgtatatt
gi|6 : cTACACTTCCTAGTTTTATCAA-TTAT--C-TCAACACCATATTCTGACGATCGGGGCTAGTTTTGTACAACCGTATGTTTATGACAAAA------TATTAAAACAACTATTTGTTTAATCGTCTCATTTCTAAACTCGACCAA-AATTCCGTGCTA-TCT----GCATA-CG-------GTTATACATATTACACTGTATGTCAGTGAAT--GATA--CCAACCGTGTTGAACGACATCA-ACGAAA-ATCAAA--TGT-TGTGTACGGGGTGTGATACATGCTGTGTGCTACATGCTACACAAGGGGTGTATGTTAACAAATTCCTTT---T--ACACAAACGTGTGGAAATATCATTT-ATTt
gi|7 : atCGGGGTCGATAGCTTATGTCTGTGGAACCTCGGCTGTAGGC------TA-TCCGGAA-GCAATGATCCAGATGGTAGGTAGT-CGAGTT-TTTTTACAACCAAATAT-CCAAATTTATGGATA------T--TTGGCAAGTAAAATGTATTCC--TA-GGAAGAAGAGCAACAT--TGGGAAGAA------TATATGAAGGAAC---AAAT-----ATA-CTTCTGATCGTATCCTTTCTATGTTTATCAAGACAC--CGTCAACAat
gi|8 : GGTCAA-GGTAT-GATT-TTTGTCCAA---TTTTTTC--AATTCATAGATACATGATTATGTCGCTGATAAAACATATGTT--TACAGAAGAA-AGC--CTTCAT-TAAGGAG------TATATG--GACAC---ATTT-----GAATCGGTG----GTACATTTTCTAGTTTAATCAA-ATAC--C-TCGCCAT-A-ATGTAGACAAT-----CT-GTTTAGCACTAC----TGTTTA---------------ATTACGACTAAGCTTCGGTTTATCA--TCACCTTgca
gi|9 : ACACCAACATGCAGGGT--GTAGACTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGAAAATTCTGGTGATCGA-GAT-C-AGAT-TTTGCAC------ATCT-C--AAATTATGGATA------TATTT---------------TGCT--TACGGTAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTATACTGTCTAGTTTTATCAA-GCAc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCCCCCTCTTCTAAAAATATGAAAAATAAAAAATAACATGACAATAGCTCAAAAGTAAGTGTGATTTTCCGCCCAATCACTTCCATCAAATCGTTCATGTCACGATATCGTTTTTACTTTGGCAGCTTTTGGAGATGGGCCTAAATTGGTACATATATTAAGTATCTCACATGTGGCCATCTCAAA
Unaligned ( gi|12 ): TTTCTACTTTTAGAAAGCTTTTAAAGTGACTACTTGTGATATACTAATATATGTACATACATGTATTTCATTTAGTATCTCAGAAGTGGTCATTTTAAAAGCCTGCAACAAGTAGAAACTGAC
Unaligned ( gi|16 ): AGTGGTCATCTCAAAAGCTTGCAGAATATAGAAATAAACTGACTATGCAGAACAAGTTATGAAGGTGAT
Unaligned ( gi|19 ): ATACATTAGTATGATTTTTTTCCTGTTAGAATCCCAAA
Alignments
lowQualScore : 111111 11 111111 11 111111 111 11111 1111 111111 1111 3333333333 111 222222 33333333 333333333333 111111 222222 1
lowQualScore : 66 4 66 4 444444 5 11 5 4 3 4 0 666 4 777 4 55 111111 0 2 11 555 77 5 99 6 999999 99 111 66666 3 2222 5 77 5 6 6 0 0 3 0 3333 666666 1 77 99 7 8 7777 4444444444 777 444444 99999999 0 0 6 6 6 2 99 6 3 444444444444 3 2 1 5 1 66 6 999999 4 1 1 8 888888 0
lowQualScore : .. . .. . ...... . .. . . . . . ... . ... . .. ...... . . .. ... .. . .. . ...... .. ... ..... . .... . .. . . . . . . . .... ...... . .. .. . . .... .......... ... ...... ........ . . . . . . .. . . ............ . . . . . .. . ...... . . . . ...... .
lowQualScore : 11 4 11 4 444444 0 99 0 5 2 4 9 222 0 000 0 55 555555 8 0 99 000 99 7 22 7 222222 22 777 77777 5 1111 0 99 7 7 7 1 4 0 7 7777 444444 3 99 22 3 0 0000 5555555555 555 000000 22222222 8 3 7 7 0 2 22 7 7 222222222222 2 2 0 2 0 44 4 000000 6 4 0 0 888888 0
consensus : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
Reference ( family-1842 ) : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
gi|1 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-CGTAGGC------TG-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-A--TATTTAAGGCTA------TATCTTGGAGG-AAAATGTATGCC--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCAACT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATGCCGACGATCGGGACTAGTTTGGTACAATCGTATGTTTGTGACCAAC------TATCAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATACATGTATAAGGTTATACA---TATTC----TGTCAGTGAAT--A--AATCCAATCGTGTTAAAAGATATCA-ACGAAA-AACCGA--TGT-TGTTCATGGGGTGTAG------------GCTACATGTTGTGCACGGGGTGTAAGCTACCGAATTTCTTCATGT--ACTAGTAAGCGCGGAAATATGGTTTAATAT------TTTATATTTAGTGATA
gi|11 : acCAGGTATACCCCAACATGCGGGAT--GTAGGCTATGT-TATG--ACCGTGG-TGTAAGCTACATGTA-CC--GAA-GCGAAAATTCCGGTGGTCGA-G------GTT-TTTGCACAA---AATCT-C--TATTT-----CA---------TTTGCAGA-AAATTATATGCT--TGCAGAAGAA-AGCAACAgttctatgtgacatataccatctatctactctcagtgtatgcatatataggtacctgaaaaagtggaaagcctgcaacatacatagatcgtaagcacttaaaccccccccccccccccattttattgtcatcccattaaaaacaaatataaaac
gi|13 : gGTATACT--AGAATGCTAGGA--GTAGGCCATGC-TGGT--AAAGGGT-TGTAAAC------TAACCA-GAATGCGACGATT--GGTG-TCG---GT-C-AGTTATTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCA
gi|14 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAGGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GAT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------
gi|15 : acTCTGAC---CGGGGCTAGT-------------ATGTTTATGATCAAA------TATTTGAACAACCCTGTATTTAATCC--TCACTTTT--ACGTGACCATTAATTACGTGTTA-TCT----CTATA-
gi|17 : ttaAAAGATATCA-ACGAAA-AGCCAA--TGT-TGTGCATGGGGTGTAG------------GCT-CATGTTGTGTACCTGGTGT
gi|18 : CGAGTATACCCTAACATGCGGGGT--GTAGGCTATGT-TGAG--AACGGGG-TGTAtat
gi|2 : cCGGATATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CG--GAA-GCGAAGATTACGGTGGTCGA-GAT-C-AGTT-TTGGCACAA---AATCT-C--AATTTATGGGTA------TATTTTGTAGG-AAGTTGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTTTGACGATCGGGGCTAGTTTGGTACCACCGTATGTTTATGATCAAA------TATTAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCCA-AATTACGTGCTA-TCT----GTATT-AT-------GTTATACA---TACCC----TGTCAGTGAATAAA--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCAA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTAAGCTACCGAATTCCTTT---T--ACATGAAAGCGCGGGAAAATTATTT-ATCG------TTAA-GTTTAGTGATA
gi|20 : tT-TTTGCACAA---AATCT-C--AATTTATGGATA------TA
gi|3 : GAAATCAGACAAAACGACCGGCCTGTCTGTGCACGGGGTGTAG------------GCTACCTGTTGTG-ATGGGGTGTAGGCT-CCAGATT---TT---TGAAGATGTAAGTGCAGAAATATAACTT-ATTT------TCTA-GTTTAGTGATA
gi|4 : CCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAATAC-A-ATTCTGACGATCGTGGCTGCTTTGGCATTACCATACCTGTAT------A------T-TTAGGACAACGCTTTGTTTAATCG--TCACATCT--ACATGACCAATAATTACGTGCTAGCCTAACAGTATA-AT-------TTCATGCA---TACC-------------AAT--A-----------GTATTGAAAGACATCA-ACGAAA-A----A--T-------CA---------------------------GTGTTGTGCA-AGGGTGTATGC----GAATTTCTTT---C--ACATGTAATTGCAGAAATATAATTT-ATTTATTTCCTTTA-GTTTAGTGAgtctataatgtaacatacacaatccatgtgcgcggtatatgcagcagacacctgaaaaaggtggatcgctttacacgtacatacatatagatgttatttacacccccctttttttcaacctaatgaaaaataaatggagaacatgcatattatttcaagccaacatactatgatttcctcccgatcacttaataatcaactcgttctgcaaaagcagtttctactttctgtaatcttttgaatccgcgcagatactgatacattattacatgtagattcagaagtggtcattcaaaaacttaacaaagtagaaactggca
gi|5 : gCGGGTATACCCCAACATGAGAGGT--GTAGGCTATGT-TGTG--ACCGGGT-TGTAACC------TA-CT--AA---------TTCAGGTGGGCGA-GGT-A-AGTT-TTTGCACGA---TATCT-C--AATTCATGGGTA------TGTTTTGCAGA-AAAACATACGGTTATATGGAAGAA-AGCAGCAA--T-TAAAGAATACATTTATATG--AAAACAAAAAATGTGGGATAATCCCT----GTTAACTTTCTAGATTTATCAT-ATACAAC-TCAACAC-A-ATTCTGACGATCGGGAATAGTTTGTCAATACCGCAAGTCTATAATCAAATACATGTATTAGGACAACAGTTTATTTAATAG--TCACTTTT--A-ATTACAAAT--TTACCTGCTatgttctaggtgacatatgcatgaataattcacatacacgcagtatatatgcacagatacttcaacagtggataacttacacgtatatt
gi|6 : cTACACTTCCTAGTTTTATCAA-TTAT--C-TCAACACCATATTCTGACGATCGGGGCTAGTTTTGTACAACCGTATGTTTATGACAAAA------TATTAAAACAACTATTTGTTTAATCGTCTCATTTCTAAACTCGACCAA-AATTCCGTGCTA-TCT----GCATA-CG-------GTTATACATATTACACTGTATGTCAGTGAAT--GATA--CCAACCGTGTTGAACGACATCA-ACGAAA-ATCAAA--TGT-TGTGTACGGGGTGTGATACATGCTGTGTGCTACATGCTACACAAGGGGTGTATGTTAACAAATTCCTTT---T--ACACAAACGTGTGGAAATATCATTT-ATTt
gi|7 : atCGGGGTCGATAGCTTATGTCTGTGGAACCTCGGCTGTAGGC------TA-TCCGGAA-GCAATGATCCAGATGGTAGGTAGT-CGAGTT-TTTTTACAACCAAATAT-CCAAATTTATGGATA------T--TTGGCAAGTAAAATGTATTCC--TA-GGAAGAAGAGCAACAT--TGGGAAGAA------TATATGAAGGAAC---AAAT-----ATA-CTTCTGATCGTATCCTTTCTATGTTTATCAAGACAC--CGTCAACAat
gi|8 : GGTCAA-GGTAT-GATT-TTTGTCCAA---TTTTTTC--AATTCATAGATACATGATTATGTCGCTGATAAAACATATGTT--TACAGAAGAA-AGC--CTTCAT-TAAGGAG------TATATG--GACAC---ATTT-----GAATCGGTG----GTACATTTTCTAGTTTAATCAA-ATAC--C-TCGCCAT-A-ATGTAGACAAT-----CT-GTTTAGCACTAC----TGTTTA---------------ATTACGACTAAGCTTCGGTTTATCA--TCACCTTgca
gi|9 : ACACCAACATGCAGGGT--GTAGACTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGAAAATTCTGGTGATCGA-GAT-C-AGAT-TTTGCAC------ATCT-C--AAATTATGGATA------TATTT---------------TGCT--TACGGTAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTATACTGTCTAGTTTTATCAA-GCAc
blockSeqs : CG C GA C TACATG A CG T A C T CG A CCA T CA CATGAT T GT TTA TA G CA G TACATT AA AAA GTGGG T GATC G AA G C T C GATC TACATG G TC AA T G AACA AT TAT ACTGTA AAAA G C G A CC C T TACATGCTGTGT A A T C A TA C TGA T A T . ATTTCC .
blockSeqs : . . . . . . A . C A . AT . . . . . T AT TTG . . . . . . . . A . . . . . . T GATC . G . . T . . AT . CC GATA . . A A . . C . A G C C G TA T T T T A . . .
blockSeqs : . . . . . . . . C C . C . . . . . T A ACA . . . . . . . . T . . . . . . T AATC . T . . T . . CG . C A . . A G . . C . A C C T T T C C T T A . . .
blockSeqs : . . . . . . . . A A . C . . . . . T G ATG . . . . . . . . T . . . . . . A GACA . T . . . . . . . T A . . C . . G C A T . . T C A C .
blockSeqs : . . . . . . . . T A . C . . . . . G A ACA . . . . . . . . . . . . . . . T . . T . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . A T . A . . . . . C . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : T*****
originalCons : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
finalCons : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTTT-----ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCCCCCTCTTCTAAAAATATGAAAAATAAAAAATAACATGACAATAGCTCAAAAGTAAGTGTGATTTTCCGCCCAATCACTTCCATCAAATCGTTCATGTCACGATATCGTTTTTACTTTGGCAGCTTTTGGAGATGGGCCTAAATTGGTACATATATTAAGTATCTCACATGTGGCCATCTCAAA
Unaligned ( gi|12 ): TTTCTACTTTTAGAAAGCTTTTAAAGTGACTACTTGTGATATACTAATATATGTACATACATGTATTTCATTTAGTATCTCAGAAGTGGTCATTTTAAAAGCCTGCAACAAGTAGAAACTGAC
Unaligned ( gi|16 ): AGTGGTCATCTCAAAAGCTTGCAGAATATAGAAATAAACTGACTATGCAGAACAAGTTATGAAGGTGAT
Unaligned ( gi|19 ): ATACATTAGTATGATTTTTTTCCTGTTAGAATCCCAAA
Alignments
lowQualScore : 111111 11 111111 11 111111 111 11111 1111 111111 1111 3333333333 111 222222 33333333 333333333333 111111 222222 1
lowQualScore : 66 4 66 4 444444 5 11 5 4 3 4 0 666 4 777 4 55 111111 0 2 11 555 77 5 99 6 999999 99 111 66666 3 2222 5 77 5 6 6 0 0 3 0 3333 666666 1 77 99 7 8 7777 4444444444 777 444444 99999999 0 0 6 6 6 2 99 6 3 444444444444 3 2 1 5 1 66 6 999999 4 1 1 8 888888 0
lowQualScore : .. . .. . ...... . .. . . . . . ... . ... . .. ...... . . .. ... .. . .. . ...... .. ... ..... . .... . .. . . . . . . . .... ...... . .. .. . . .... .......... ... ...... ........ . . . . . . .. . . ............ . . . . . .. . ...... . . . . ...... .
lowQualScore : 11 4 11 4 444444 0 99 0 5 2 4 9 222 0 000 0 55 555555 8 0 99 000 99 7 22 7 222222 22 777 77777 5 1111 0 99 7 7 7 1 4 0 7 7777 444444 3 99 22 3 0 0000 5555555555 555 000000 22222222 8 3 7 7 0 2 22 7 7 222222222222 2 2 0 2 0 44 4 000000 6 4 0 0 888888 0
consensus : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
Reference ( family-1842 ) : NCGGGTATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCAGG-AAAACGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTCTGACGATCGGGGCTAGTTTGGCACNACCGTATGTTTATGATCAAA------TATTAGGACAACGCTTTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATA-AT-------GTTATACA---TACCC----TGTCAGTGAAT--A--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCGA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTANGCTACCGAATTCCTTT---T--ACACGTAAGCGCGGAAATATNATTT-ATTT------TTTA-GTTTAGTGATA
gi|1 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-CGTAGGC------TG-CC--GAA-GCGACGATTCAGGTGGTCGA-GGT-C-AGTT-TTTGCACAA---AATCT-A--TATTTAAGGCTA------TATCTTGGAGG-AAAATGTATGCC--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCAACT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATGCCGACGATCGGGACTAGTTTGGTACAATCGTATGTTTGTGACCAAC------TATCAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCAATAATTACGTGCTA-TCT----GTATACATGTATAAGGTTATACA---TATTC----TGTCAGTGAAT--A--AATCCAATCGTGTTAAAAGATATCA-ACGAAA-AACCGA--TGT-TGTTCATGGGGTGTAG------------GCTACATGTTGTGCACGGGGTGTAAGCTACCGAATTTCTTCATGT--ACTAGTAAGCGCGGAAATATGGTTTAATAT------TTTATATTTAGTGATA
gi|11 : acCAGGTATACCCCAACATGCGGGAT--GTAGGCTATGT-TATG--ACCGTGG-TGTAAGCTACATGTA-CC--GAA-GCGAAAATTCCGGTGGTCGA-G------GTT-TTTGCACAA---AATCT-C--TATTT-----CA---------TTTGCAGA-AAATTATATGCT--TGCAGAAGAA-AGCAACAgttctatgtgacatataccatctatctactctcagtgtatgcatatataggtacctgaaaaagtggaaagcctgcaacatacatagatcgtaagcacttaaaccccccccccccccccattttattgtcatcccattaaaaacaaatataaaac
gi|13 : gGTATACT--AGAATGCTAGGA--GTAGGCCATGC-TGGT--AAAGGGT-TGTAAAC------TAACCA-GAATGCGACGATT--GGTG-TCG---GT-C-AGTTATTTGCACAA---AATCT-C--AATTTATGGATA------TATTTTGCA
gi|14 : CAGGTACACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAGGC------TA-CC--GAA-GCGACGATTCAGGTGGTCGA-GAT-C-AGTT-TTTGCACAA---AATCT-C--AATTTATGGATA------
gi|15 : acTCTGAC---CGGGGCTAGT-------------ATGTTTATGATCAAA------TATTTGAACAACCCTGTATTTAATCC--TCACTTTT--ACGTGACCATTAATTACGTGTTA-TCT----CTATA-
gi|17 : ttaAAAGATATCA-ACGAAA-AGCCAA--TGT-TGTGCATGGGGTGTAG------------GCT-CATGTTGTGTACCTGGTGT
gi|18 : CGAGTATACCCTAACATGCGGGGT--GTAGGCTATGT-TGAG--AACGGGG-TGTAtat
gi|2 : cCGGATATACCCCAACATGCGGGGT--GTAGGCTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CG--GAA-GCGAAGATTACGGTGGTCGA-GAT-C-AGTT-TTGGCACAA---AATCT-C--AATTTATGGGTA------TATTTTGTAGG-AAGTTGTATGCT--TACGGAAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAACAC-A-ATTTTGACGATCGGGGCTAGTTTGGTACCACCGTATGTTTATGATCAAA------TATTAGAACAACGCTGTGTTTAATCG--TCACTTTT--ACGTGACCCA-AATTACGTGCTA-TCT----GTATT-AT-------GTTATACA---TACCC----TGTCAGTGAATAAA--A--CCAATCGTGTTGAAAGATATCA-ACGAAA-AACCAA--TGT-TGTGCACGGGGTGTAG------------GCTACGTGTTGTGCACGGGGTGTAAGCTACCGAATTCCTTT---T--ACATGAAAGCGCGGGAAAATTATTT-ATCG------TTAA-GTTTAGTGATA
gi|20 : tT-TTTGCACAA---AATCT-C--AATTTATGGATA------TA
gi|3 : GAAATCAGACAAAACGACCGGCCTGTCTGTGCACGGGGTGTAG------------GCTACCTGTTGTG-ATGGGGTGTAGGCT-CCAGATT---TT---TGAAGATGTAAGTGCAGAAATATAACTT-ATTT------TCTA-GTTTAGTGATA
gi|4 : CCCT----GTACACTTTCTAGTTTTATCAA-ACAC--C-TCAATAC-A-ATTCTGACGATCGTGGCTGCTTTGGCATTACCATACCTGTAT------A------T-TTAGGACAACGCTTTGTTTAATCG--TCACATCT--ACATGACCAATAATTACGTGCTAGCCTAACAGTATA-AT-------TTCATGCA---TACC-------------AAT--A-----------GTATTGAAAGACATCA-ACGAAA-A----A--T-------CA---------------------------GTGTTGTGCA-AGGGTGTATGC----GAATTTCTTT---C--ACATGTAATTGCAGAAATATAATTT-ATTTATTTCCTTTA-GTTTAGTGAgtctataatgtaacatacacaatccatgtgcgcggtatatgcagcagacacctgaaaaaggtggatcgctttacacgtacatacatatagatgttatttacacccccctttttttcaacctaatgaaaaataaatggagaacatgcatattatttcaagccaacatactatgatttcctcccgatcacttaataatcaactcgttctgcaaaagcagtttctactttctgtaatcttttgaatccgcgcagatactgatacattattacatgtagattcagaagtggtcattcaaaaacttaacaaagtagaaactggca
gi|5 : gCGGGTATACCCCAACATGAGAGGT--GTAGGCTATGT-TGTG--ACCGGGT-TGTAACC------TA-CT--AA---------TTCAGGTGGGCGA-GGT-A-AGTT-TTTGCACGA---TATCT-C--AATTCATGGGTA------TGTTTTGCAGA-AAAACATACGGTTATATGGAAGAA-AGCAGCAA--T-TAAAGAATACATTTATATG--AAAACAAAAAATGTGGGATAATCCCT----GTTAACTTTCTAGATTTATCAT-ATACAAC-TCAACAC-A-ATTCTGACGATCGGGAATAGTTTGTCAATACCGCAAGTCTATAATCAAATACATGTATTAGGACAACAGTTTATTTAATAG--TCACTTTT--A-ATTACAAAT--TTACCTGCTatgttctaggtgacatatgcatgaataattcacatacacgcagtatatatgcacagatacttcaacagtggataacttacacgtatatt
gi|6 : cTACACTTCCTAGTTTTATCAA-TTAT--C-TCAACACCATATTCTGACGATCGGGGCTAGTTTTGTACAACCGTATGTTTATGACAAAA------TATTAAAACAACTATTTGTTTAATCGTCTCATTTCTAAACTCGACCAA-AATTCCGTGCTA-TCT----GCATA-CG-------GTTATACATATTACACTGTATGTCAGTGAAT--GATA--CCAACCGTGTTGAACGACATCA-ACGAAA-ATCAAA--TGT-TGTGTACGGGGTGTGATACATGCTGTGTGCTACATGCTACACAAGGGGTGTATGTTAACAAATTCCTTT---T--ACACAAACGTGTGGAAATATCATTT-ATTt
gi|7 : atCGGGGTCGATAGCTTATGTCTGTGGAACCTCGGCTGTAGGC------TA-TCCGGAA-GCAATGATCCAGATGGTAGGTAGT-CGAGTT-TTTTTACAACCAAATAT-CCAAATTTATGGATA------T--TTGGCAAGTAAAATGTATTCC--TA-GGAAGAAGAGCAACAT--TGGGAAGAA------TATATGAAGGAAC---AAAT-----ATA-CTTCTGATCGTATCCTTTCTATGTTTATCAAGACAC--CGTCAACAat
gi|8 : GGTCAA-GGTAT-GATT-TTTGTCCAA---TTTTTTC--AATTCATAGATACATGATTATGTCGCTGATAAAACATATGTT--TACAGAAGAA-AGC--CTTCAT-TAAGGAG------TATATG--GACAC---ATTT-----GAATCGGTG----GTACATTTTCTAGTTTAATCAA-ATAC--C-TCGCCAT-A-ATGTAGACAAT-----CT-GTTTAGCACTAC----TGTTTA---------------ATTACGACTAAGCTTCGGTTTATCA--TCACCTTgca
gi|9 : ACACCAACATGCAGGGT--GTAGACTATGT-TGTG--ACCGGGG-TGTAAGC------TA-CC--GAA-GCGAAAATTCTGGTGATCGA-GAT-C-AGAT-TTTGCAC------ATCT-C--AAATTATGGATA------TATTT---------------TGCT--TACGGTAGAA-AGCAACAT--T-TGAAGAA------TATATG--GAAAC---AAAT-----ATATCCCCT----GTATACTGTCTAGTTTTATCAA-GCAc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CCCCCCCTCTTCTAAAAATATGAAAAATAAAAAATAACATGACAATAGCTCAAAAGTAAGTGTGATTTTCCGCCCAATCACTTCCATCAAATCGTTCATGTCACGATATCGTTTTTACTTTGGCAGCTTTTGGAGATGGGCCTAAATTGGTACATATATTAAGTATCTCACATGTGGCCATCTCAAA
Unaligned ( gi|12 ): TTTCTACTTTTAGAAAGCTTTTAAAGTGACTACTTGTGATATACTAATATATGTACATACATGTATTTCATTTAGTATCTCAGAAGTGGTCATTTTAAAAGCCTGCAACAAGTAGAAACTGAC
Unaligned ( gi|16 ): AGTGGTCATCTCAAAAGCTTGCAGAATATAGAAATAAACTGACTATGCAGAACAAGTTATGAAGGTGAT
Unaligned ( gi|19 ): ATACATTAGTATGATTTTTTTCCTGTTAGAATCCCAAA