lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1 3333333333333333333333 111 1 11 4444444 1111 6666666666666666666666666666666666666666666666666666666666666666666666666 1 1 33333 333 111111 77777777777777 1 333333333333333333333333333333333333333333333333333333333333 444444444 22222222 11 11 222222222222222222222222 11 22222222222222 222222 11 11111 33333 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 777777777777777777777777 222222222222222222222222 2222 1111111 2222222222222 333333 2222222222222 66666666666666666666666 2222222222 1111 22 111111111 666666666666666666666666666666 1111 1111111111111111111111111111111111111111111111111111 111 777 4
lowQualScore : 2 4 3 9999999 0 4444444444444444444444 666 6 22 44 5 2222222 7777 8 6 0 0 8 2222 7777777777777777777777777777777777777777777777777777777777777777777777777 99 1 6 5 00000 6 111 1 6 6 666666 22222222222222 6 6 6 555555555555555555555555555555555555555555555555555555555555 8 8 0 999999999 44 8 77777777 99 99 1 4 1 666666666666666666666666 77 5 22 1 55555555555555 5 222222 33 00000 22222 3 5 1 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 66 999999999999999999999999 8 8 777777777777777777777777 8 0000 8888888 5 5 77 5 8 1 5 2 8 4444444444444 4 555555 0 7777777777777 99 22222222222222222222222 5 6 5 5 1111111111 0000 5 00 5 999999999 3 111111111111111111111111111111 2 4444 9 1 2 2222222222222222222222222222222222222222222222222222 444 3 6 66 6 99 6 6 99 8 000 0
lowQualScore : . . . ....... . ...................... ... . .. .. . ....... .... . . . . . .... ......................................................................... .. . . . ..... . ... . . . ...... .............. . . . ............................................................ . . . ......... .. . ........ .. .. . . . ........................ .. . .. . .............. . ...... .. ..... ..... . . . . ......................................................................................................... ... .. ........................ . . ........................ . .... ....... . . .. . . . . . . ............. . ...... . ............. .. ....................... . . . . .......... .... . .. . ......... . .............................. . .... . . . .................................................... ... . . .. . .. . . .. . ... .
lowQualScore : 0 2 2 0000000 0 0000000000000000000000 000 0 66 22 6 2222222 0000 0 0 8 8 0 4444 5555555555555555555555555555555555555555555555555555555555555555555555555 22 3 7 0 00000 7 777 0 7 7 777777 55555555555555 7 0 6 000000000000000000000000000000000000000000000000000000000000 0 0 8 666666666 66 0 00000000 00 00 0 0 0 333333333333333333333333 99 7 00 4 44444444444444 7 999999 66 33333 00000 6 7 7 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 44 444444444444444444444444 0 0 888888888888888888888888 0 0000 6666666 7 7 99 0 6 4 1 9 9 9999999999999 4 444444 9 5555555555555 11 22222222222222222222222 0 0 0 0 9999999999 2222 0 77 7 555555555 7 333333333333333333333333333333 5 2222 8 0 5 2222222222222222222222222222222222222222222222222222 222 5 7 22 7 22 7 7 22 0 000 0
consensus : AACACTTTCNCTTT--A----GACCTATAT--------GTG--A--A-----CTCTTA-C-TT-AAT-TCATCTCTCCGACTC-AGAANACTTTGACCAT----TCAAAACA-ATTAGAAAAT-CATTCACA-ACTC-CA-AACAANCCCAACCCTCGCAAACAACTC--------------A---T-CCC-AC---GACG-ACACT--CCTG-GGAAAACGGCTCC----AAG-CACCCC-GCACCTGC-AT-CTC--CTCTTATCT--TAT-TTTT-CTC-TCTTTACAAGCCTC---TAA--TCG---A-CA-----------A------ATAAC-----G------GT-----TGTC-TGA-TATAA-T--T---AATCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-CCC------C-CAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATG-NNTTT--CCACCAG-AGGA--G--GCAG-GTTTGCATTTTTTTTTTT------------GAAAAAA-----AA-------AAG-A-G-G-CATTANT-TGC----TTTCN---TAT-----TTTTTTTT------CATTTAATTTNA---TTACGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AN--GAAAG-AC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACT-----TT-TGTGTAT-T---ACGTGT-------------GC-CTAGA-----------A-----------G-TGA-TC-TCA----------AAAACA--CGAAA-TCTG-TTTT-CCGTCGGG--GGG----CNTTG-C-TCCCCC-----AC--------CA-N-GGCGTT----GCCCTGGACTCGCTGGAGCC-T-----TGGGCGACCCACAGA-------CTCATCGCCTTA-AT-T------GGTGC-C-TATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( gi|1 ) : AACGCCTCCCCTTT--A----GACCTATAT--------GTG--A--A-----CTCTTA-C-TT-AAT-CCATCTCTCTGACTC-AGAAC-CTTTGATCAT----TCAAAACA-ATTAGAAAAT-CATTCACG-ACTCGCA-AACAACCCCCACCCTCGCAAACAACTCC------------CACCTT-CCC-AC---GACGTACACT--CCTG-GGAAAACCGCTC-----AAG-CACCC--GCACCTGC-AT-CTC--CTCTTATCTGGTGTCTTTT-CTC-TCTTT-CAAGCCAC---TAA--TTG---A-CA-----------A------ATGG------G------GT-----TGTC-TGA-TATA--T--C---AATCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-CCC------C-CAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATA-TATTT--CCATCAG-AGGA--T--GCAG-GTTTGCATTTTTTTTTTTTTTTTTTTTTCGGAAAAAA-----AA-------AAG-AGG-G-CATTATT-TGC----TTTCC---TTT-----TTTTTTTT------CATTTAATTTTT---TTATGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AG--GAAAG-GC-CTCTGG-----TTAAAAG---AT-ATTGAATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACT-----TT-TGTGTAAAT---ACATGT-------------GT-CTAGA-----------A-----------G-TAA-TC-TCA----------AAAACG--CGAAA-TCTG-GTTT-CCATCGGG--GGG----CATTG-CATCCCCC-----AC--------CA-G-GGCGTT----GCCCTGGACTCGTTGGAGCCGT-----TGGGCAACCGACAGA-------CTCATCGCCTTA-AT-T------GGTGC-C-TATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATGTCAGC
gi|4 : AACGCCTCCACTTTTAA----GAC-TATAT--------GTG--A--A-----CTCTTAAC-TT-AAT-TCATCTCTCTG-CTCGAAAAA-CTTTGATCAT----TCAAAACAGATTAGAAAATGAATTAACGAACTTGCA-AACAACCCTAACCCCTACAAACAACTCCACATCACGTCTACACCTTACCCGACGGTGACGAACACT--CCTGCGGAAAACAGCTC-----AAGACCTCC--GCACCTGC-AT-TTC--CTCTTATCTTGTATCTTTTCCTCTTCTTT-CAAGCCAC---TAAGTCTG---AGCA-----------ATAACTCATTGAATAATG------GT-----TGTC-TGA-TA-A--T------AAT-AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-CCCCCTCCTC-CCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATG-GCTTTC-CCACCAGCAGGA--CTAGC-G-GTTGGCATTTTTTTTTCT---------------AAAA-----AA-------AAA-AGG----ATAAGT-TGC----TT
gi|7 : tataAACATTTTCCTTTT--A----GGCCTATAT--------GTGTGA--A-----TTCTTA-C-TTCAAT-TCATCTTTCTGAATC--GCACACTTTGACCAT----TCAAAACA-ATCAG-AAAT-CATGCACA-CCTC-----ACAAT-----------TAAGCAAC--------------------T-CCC-GC---G----ACACT--CTGG-GGAAAACAGCTTTATAAAAG-CACC------CTTGT-CC-CTC--CTCTTATCT-GCATCTTTT-CTC-TCTTT-CAAGCCTC---TTA--TAC---A-CA-----------ATATTTCACGT------GAATTTAGTACTAGTATC-TGA-TGTA--TAAT---AGTTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCggaaatcattaaggagattcgtgcaaactttt
gi|5 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtcAACACTTTCCCTTT--AAATAGGCCTATATAAATGTATGTG--A--ATTTAACTCTTA-C-TTTAAT-TCATCTCACCAACTC-AGACA-CTTTGACCATGCATTCAAAACA-AACAGAAA-T-CATTCACA-A--------------------CTTGCCAACAACTC--------------------------------G-ACACTGACCTG-GGAGAACAGCTC-----CAG-CACCCC-ACATCTGC-AT-CTC--CTCTTATC---TGTATTTT-CTC-TCTac
gi|9 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcAACACATTCTCTTG--A----GACCTATAT--------GTG--AACA-----CTCTTA-CTTT-AAT-GCATCT-------------ACACTTTGACCAT----TCAGAACA-A-TAAAAAAT-CATTCTCA-ACTCTCATAACAaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|2 : ctctgtggtgtagttgccattagacacgtcatgtatcatgtacacctatttgtatacccccccccacccccacacacacttcaaaattaaaatgttaaagcaccagattttcgctgatgaaatgtcattgatgctgacaaaatataaacccaaccgtggcgcattgtgTCCATTTT--A----GAC-TATAT--------GT---A--A-----CTCTTA---TT-AATTCCATCTCTCTGACTC-AAA---CTTTGATCAT----TCAAAA---ATTAAATAAT-CA---------------AACAAACTCAACCCTTG-AAACAACTCC------------CACCTT-CCC-A----GACA---ACT--CCTG-GGAAAACAGCTC-----AAG-CACC---GCAC--GCCATTCTCTGCCTTTGTATG------TTT-CTC-TCTTT-CAAGCAAC-----A--TTG---A-CATATTCACATTGA------ATAAT-----G------GT-----TGTAATGA-TATA--T--ATTAAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-CCC------A-CAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAA--A-TGCTT--TCA--AG-AGAA--A--GGCG-GTTTGCATTTTTTTTTTTCT---------GGAAAAAA-----AA---------------G-CA-TAAT-TGC----TT
gi|16 : CTCACAAACAAC----------------A---T-CCC-AC---GAC----AGT--CC-G-GGAAACAGGCTCC----AAG-CACCCCCGCACCTGC-AT-CT------TTA--------------CTC-TCTTTACAAGCCTCGGTTAA--TCA---A-CA-----------A------gcatattgcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|15 : aaattcatgcacaaaCTCACAAACAAC----------------A---T-CCC-AC---GAC----AGT--CC-G-GGAAACAGGCTCC----AAG-CACCCCCGCACCTGC-AT-CT------TTA--------------CTC-TCTTTACAAGCCTCGGTTAA--TCA---A-CA-----------A------tagttcaggtgaataaaggttggatgatatgataatttcaaaccagt
gi|6 : aaattcatgcacaaa---TAA--TTATGCA-TA-----------A------ATAAC-----G------GC-----TGTC-TGAATATAA-T--T---ATCCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA----------------C-CAAC--TGTTTGT-CA-----------A----T-T--TT----T-TTA---A-TGCTT--CCACCAT-A-GA--G--GCAG-GTTCG-GTTTTTCT----------------GAAAAAA-----AA-------TAGTTTG-T-TTTTGTTGTGT----TTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCATATAATTTAA---TTAAACTGACAAAAATATTATTAA-------------------GAAAA-AC-CTCTGG-----TAAAAAC---AA-AGTGGCTT-TTACTTTATTTATATTAAT-TTTT-TC--CCTCT--AAACAATATTT-ATGAA-AGAAACCCA---AAATT-----TT-GGTATATATACAACATGT-------------GC-CTAGA-----------A-----------T-TGGTTC-CCAAATTATTTTCAAAACA--AGAAA-TCTA-CTCT-CCGTTGGA--CCC----CCCCC-CCCCCCCCCCCAAACAACAACAACA-A-GGCGCT----GCCTTGGACCCGCTGtagttcaggtgaataaaggttggatgatatgataatttcaaaccagt
gi|3 : ------GC-----TGTC-GGA-ACTAATT--T---AATCAAAA-CT-------TTTTT--TGTGAATTACGGCAT-CAATATAAAAATGC-----AAAGTTT-CTT------TTCA----TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATTTTGCCAT----AGGA--G--GCAGCGT--GCCTTTTTTTCT-------------GGAAAAAA-----TA-------CCG-AAGTGTCATT-TT-CGTATAATTTCC---AAC-----TTTGTTT--------ATTTA--TTGA---TTACGTTGAAGAA--TATT----AAA-AC---TCTTA--ATATGAAAG-ACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--T-----TG-TGTTTAATT---ACGTGT-------------GC-CTAGATATTGTTTCCTA-----------G-TGA-TC-GAC----------AAAACGTACGAAA-TCT-----------------GGG----CTTTG-CCTCCCCA-----GC--------TG-GAGGCTTTGGCGGTCCTCGAC-CGTC----TCGTCTTAATGGG---CCTACG-----------------CTTA-AT-T------GGTGCTT-TCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--Ct
gi|17 : ctaataaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCCCC------C-CAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATG-GCTTT--CCACCAG-AGGAGCTA-GCAG-GTTTGCATTTTTTTTTTCTTT-----------AAAAA-----AA-------AAA-AAA-G-CATAAGT-TGC----TT
gi|22 : -CCC------T-CCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATG-GTTTT--CCGCCAC-AGGA--G--GCGG-GCATGCATTTTTCTTTCT
gi|8 : ccacc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAA-AATT---CCACCAG-AGGA--G--GCAG-GTTTGCATTTTTTTTCT--------------AAAAAACCCATAATTATATTAAG---------TTAAT-TGC----TTGCA---TAT-----TTTTT---------CGCT--ATTTTAAGATCATGCTGAAAAAAATATT-TTAAAACAC---T--TA--AG--GAAAG-GC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGTGT---T---ACATGT-------------GC-CTAGA-----------A-----------G-TGA-TC-TCA----------AAAACA--CGAAA-TCTG-TTTT-CCATCGGG--GA-----CATTG-CATCCCCC-----AC--------CA-T-TGCGTT----GCCCTGGACTCGCTGGAGCCCT-----CAGGCGACCCACAGA-------CTCATCGCCTTA-AT-G------GGTGC-C-TATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gggaaaag
gi|11 : T-----TTTTCCGT------CATTTAATTTGA---TTACTCTGAAAAAA-TATT-----AA-ACATTT--TATTAC--GAAAG-AC-CTCTGC---------AAG-------------T-GTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-T-----TT-TGCGTAT-T---ACGTGT-------------GC-CTAGA-----------ATTTGTTCCCAAG-TGA-TC-TTA----------CAAACA--CGAAA-TCTG-TTTA-CC
gi|2 : ttggtataTTTG------CATTT--TTTTT---TT-T-CTGGAAAAAAAAGC-ATAATT-GC---T--T----G--CATATTGC-ATCTGG-----TTAAA-G---AT-ATTTGATT-GTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATT-----TG-TGTGTATA----ACATGT-------------GC-CTAGA-----------A-----------G-TGG-TC-TCA----------AAAACG----AAA-TTTG-TTTTTCCATCGGG--GGGGGGGCATTG------------------------------GTGTT----GTCCTGGACTCGCTGGAGCC-------TAGGCGACC-ACAGA-------CTCATCGCTTTATAT-TCACGTGGGTCG-C-TAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GTtcccgga
gi|10 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggTTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-T-----GT-TGTGTAT-T---ACATGTTCATGGAGAATTTGTTCTCCA-----------A-----------G-TGA-TCGTCC----------AAAACA--CGACACTCTG-TTTT-CCGTCTGG--GGA----CTTTG-C--CCCCC-----A----------A-G-GAC--------------AC-CATTCGGGTC-T-----TGGGCAGCCC-CAGAGTGGCCCCTCA--ACCTTA-ATCT------GGTGT-AATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGa
gi|5 : T-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-T-----TT-TGTGAATTT---ACATGT-------------GC-CTAGA-----------ATTTATTCCCAAG-TGA-TC-TCA----------AAAACA--TGAAA-TCaatcgg
gi|4 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtaTCATTAA-GGAGATTCGTGCAAACT-----TT-T
gi|14 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttggaaaTCATTAA-GGAGATTCGTGCAAACT-----TT-TGTGTATTT---AC-T-T-------------GC-CTAAA-----------A-----------GTTGA-TC-TCA----------AAAACA--CGAAA-TCTGTTTTT-CCATCGAGTTGGG----CATTGCCAT-CCCC-----AC--------CATT-TGCGTT----GCTTAGGACTCGCTGGAGCC------------------------------------CCTCA-----------GGTGC-C-TATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-G
gi|24 : aTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-G
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|18 ): AATCCAAAACAAGAAACCTGTCTTTCCGTACAGTGGAGCTCCCCACCCCCCCCCCACCCCAACTCCACCAAGCGCGCTGCCCCTGGACCCCACTGAGCGGCCTTTGCTTAGCGAGCTCCAGACCCCTCACT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 2222 22222222 111 11111111 2 1111 22222 1111 444444444444444 99999999999999999999999999999999999999999 11111 1 66666666666666 1 000000000000000000000000000 222222222222222 11111 11 11111 2222222 11 11 22222222 22222222222222 111111 333333333333333333 11111 44444444444444 222222 3333333333333 111 444444444444444444444444 11111 111111 1111 1111111 111 1111111 111 1111 88888888888888888888888888 1111111111 111 111111111111 222 77777777777777777777777777777777 111111111 1111 1111 33333333333333333333333333333 1 222 1
lowQualScore : 0 1 77 4444 4 00000000 222 44444444 5 2 5 1111 00000 2222 6 3 6 6 000000000000000 22 66666666666666666666666666666666666666666 0 77 8 5 2 88888 1 777 5 1 7 55555555555555 9 4 444444444444444444444444444 333333333333333 22222 5 11 5 55555 5 6 1111111 55 55 1 1 444 333 5 00000000 66 0 5 1 0 77777777777777 5 0 66 88 5 5 000000 5 5 0 3 666666666666666666 44444 88888888888888 22 0 1 222222 0 1 6666666666666 8 222 8 66 1 1 66 555555555555555555555555 8 66666 666666 6 5555 6666666 5 5 66 3 3 0 1 8 888 0000000 222 4 4 4 4444 00000000000000000000000000 4 4 4 7777777777 55 4 111 1 777777777777 1 2 444 55555555555555555555555555555555 0 888 5 77 5 777777777 6 4444 2222 33333333333333333333333333333 3 1 5 3 5 77 5 5 77 6 333 5
lowQualScore : . . .. .... . ........ ... ........ . . . .... ..... .... . . . . ............... .. ......................................... . .. . . . ..... . ... . . . .............. . . ........................... ............... ..... . .. . ..... . . ....... .. .. . . ... ... . ........ .. . . . . .............. . . .. .. . . ...... . . . . .................. ..... .............. .. . . ...... . . ............. . ... . .. . . .. ........................ . ..... ...... . .... ....... . . .. . . . . . ... ....... ... . . . .... .......................... . . . .......... .. . ... . ............ . . ... ................................ . ... . .. . ......... . .... .... ............................. . . . . . .. . . .. . ... .
lowQualScore : 3 0 99 3333 3 77777777 111 44444444 7 9 7 3333 99999 1111 7 5 7 7 777777777777777 11 11111111111111111111111111111111111111111 7 99 4 7 7 77777 4 111 7 4 9 11111111111111 8 0 111111111111111111111111111 222222222222222 55555 0 99 0 55555 0 7 7777777 88 88 4 0 999 777 7 33333333 99 4 0 0 1 88888888888888 0 4 99 22 0 0 888888 1 0 4 2 111111111111111111 33333 66666666666666 00 6 0 111111 6 0 7777777777777 0 444 0 44 0 4 44 000000000000000000000000 0 77777 888888 7 2222 2222222 0 0 99 2 5 1 6 0 111 8888888 222 4 4 4 0000 44444444444444444444444444 4 4 0 5555555555 55 0 333 1 444444444444 0 5 000 55555555555555555555555555555555 8 666 0 99 7 000000000 6 9999 1111 66666666666666666666666666666 3 7 7 0 7 99 7 7 99 7 333 0
consensus : AACGCTTCCCCTTT--A----GGCCTATAT--------GTG--AA-----C--TCTT-ACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAAT-CATTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACT---C--A---TC----CCA---------CGACG-------ACACT--CCTG-GGAAAACGGCTCC----AAGCA-CC-CCGCACC-TGCATCTCCTCTTATCTG-TA----T-TTTTCTCTCTTT-CAAGCCNC---TAA-TC-GA-CA----C-CA----AATA----ANG--------GT-----TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-CCC------C-CAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCATTTTTTTTT--T--T------------GAAAAAA-----AA-------AAGA---GCATTAGTTGC------TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AN--GAAAGAC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---A-T-T-ACA---TGTGCCTAGA--------------A-----------G-TGAT-C-TCAAA----------AAC--ACGAAA-TCTG-T-TTTCCGT-C----GG-G--GGGCNTTGC-C-CCCCC----------------AC--------CA-NG-GCGTTGCCC-TGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( family-1811 ) : AACACTTTCNCTTT--A----GACCTATAT--------GTG--AA-----C--TCTT-ACTT-AATTC-ATCTCTCCGACTCAGAANACTTTGACCAT----TCAAAACA-ATTAGAAAAT-CATTCAC-AACTC-CA-AACAANCCCAACCCTCGCAAACAACT---C--A---TC----CCA---------CGACG-------ACACT--CCTG-GGAAAACGGCTCC----AAGCA-CC-CCGCACC-TGCATCTCCTCTTATCT--TA----T-TTTTCTCTCTTTACAAGCCTC---TAA-TC-GA-CA------------AATA----ACG--------GT-----TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-CCC------C-CAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCATTTTTTTTT--T--T------------GAAAAAA-----AA-------AAGA-G-GCATTANTTGC------TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTNATTACGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AN--GAAAGAC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---A-T-T-ACG---TGTGCCTAGA--------------A-----------G-TGAT-C-TCAAA----------AAC--ACGAAA-TCTG-T-TTTCCGT-C----GG-G--GGGCNTTGC-T-CCCCC----------------AC--------CA-NG-GCGTTGCCC-TGGA-CTCGCTGG--AG-CC-TTGG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
gi|1 : AACGCCTCCCCTTT--A----GACCTATAT--------GTG--AA-----C--TCTT-ACTT-AATCC-ATCTCTCTGACTCAGAAC-CTTTGATCAT----TCAAAACA-ATTAGAAAAT-CATTCAC-GACTCGCA-AACAACCCCCACCCTCGCAAACAACT---CCCACCTTC----CCA---------CGACGT------ACACT--CCTG-GGAAAACCGCTC-----AAGCA-CC-C-GCACC-TGCATCTCCTCTTATCTGGTG----TCTTTTCTCTCTTT-CAAGCCAC---TAA-TT-GA-CA------------AATG----G-G--------GT-----TGTC-TGA--T-ATA--TC-AA-TCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-CCC------C-CAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATATATTT-CCATCAG-AG-GA--T---GCAG-GTTTGCATTTTTTTTT--T--TTTTTTTTTTTCGGAAAAAA-----AA-------AAGAGG-GCATTATTTGC------TTTCCTT-------------TTTTT-TTTT-CATTT-AATTTTTTTATGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AG--GAAAGGC-CTCTGG-----TTAAAAG---AT-ATTGAATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGTA--A-A-T-ACA---TGTGTCTAGA--------------A-----------G-TAAT-C-TCAAA----------AAC--GCGAAA-TCTG-G-TTTCCAT-C----GG-G--GGGCATTGCAT-CCCCC----------------AC--------CA-GG-GCGTTGCCC-TGGA-CTCGTTGG--AG-CCGTTGG----GCAACCG---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATG
gi|10 : TTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-TG----TTGTGT---A-T-T-ACA---TGTTCATGGAGAATTTGTTCTCCAA-----------G-TGAT-CGTCCAA----------AAC--ACGACACTCTG-T-TTTCCGT-C----TG-G--GGACTTTGC---CCCCC----------------A----------A-GG-AC---ACC-----A-TTC----G--GG-TC-TTGG----GCAGCCC----CAGAGTGGCCCCTCA------AC-----CTTA-ATCT------GGTGTAATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGtcagc
gi|11 : TA-------------TTTTT-CCGT-CATTT-AATTTGATTACTCTGAAAAAA-TATT-----AA-ACATTT--TATTAC--GAAAGAC-CTCTGC---------AAG-------------T-GTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-TT----TTGCGT---A-T-T-ACG---TGTGCCTAGA--------------ATTTGTTCCCAAG-TGAT-C-TTACA----------AAC--ACGAAA-TCTG-T-TTACCaatcgg
gi|14 : ttggtaTCATTAA-GGAGATTCGTGCAAACTT----TTGTGT---ATT-T-AC----T-TGCCTAAA--------------A-----------GTTGAT-C-TCAAA----------AAC--ACGAAA-TCTGTT-TTTCCAT-C----GA-GTTGGGCATTGC-CATCCCC----------------AC--------CATTT-GCGTTGCTT-AGGA-CTCGCTGG--AG-CC-C--------------------------CTCA-------------------------------GGTGC-CTATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-Gtcccgga
gi|15 : aCTCACAAACAAC-------A---TC----CCA---------CGAC----------AGT--CC-G-GGAAACAGGCTCC----AAGCACCC-CCGCACC-TGCATCT----TTA-----------------CTCTCTTTACAAGCCTCGGTTAA-TC-AA-CAATAGTTCAGGTGAATA----AAG--------GT-----TGGA-TGA--T-ATG-A-T-AA-T
gi|16 : aaattcatgcacaaaCTCACAAACAAC-------A---TC----CCA---------CGAC----------AGT--CC-G-GGAAACAGGCTCC----AAGCACCC-CCGCACC-TGCATCT----TTA-----------------CTCTCTTTACAAGCCTCGGTTAA-TC-AA-CAATAGTTCAGGTGAATA----AAG--------GT-----TGGA-TGA--T-ATG-A-T-AA-Tttcaaaccagt
gi|17 : aaattcatgcacaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCCCC------C-CAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATGGCTTT-CCACCAG-AG-GA--GCTAGCAG-GTTTGCATTTTTTTTTTCT--T------------TAAAAAA-----AA-------AAAA-A-GCATAAGTTGC------TTttcaaaccagt
gi|18 : -TCCAA----------AAC--AAGAAA-CCTG-TCTTTCCGTAC----AGTG--GAGCTCCCC-A-CCCCCCCCCCACCCCAACTCCAC--------CA-AGCGCGCTGCCCCTGGACCCCACTGAGCGG-CC-TTTGCTTAGCGAGCT---CCAGA----CCCCTC-------AC-----
gi|2 : aaTCCATTTT--A----GAC-TATAT--------GT---AA-----C--TCTT-A-TT-AATTCCATCTCTCTGACTCA---AACTTTGATCAT----TCAAAA---ATTAAATAAT-CA---------------AACAAACTCAACCCTTG-AAACAACT---CCCACCTTC----CCA----------GACA-------AC--T--CCTG-GGAAAACAGCTC-----AAGCA-CC-GCACGCCATTC-TCTGCCTTTGT-----A----T-GTTTCTCTCTTT-CAAGCAAC-----A-TT-GA-CATATTCACATTG-AATA----ATG--------GT-----TGTAATGA--T-ATATATT-AAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-CCC------A-CAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAAATGCTTT---CA--AG-AGAAA--G---GC-G-GTTTGCATTTTTTTTT--TTCT------------GGAAAAA-----AA-------A------GCA-TAATTGC------TTGCATA-------------TTt
gi|2 : TCTGG-----TTAAA-G---AT-ATTTGATT-GTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATTT----GTGTGT---A-T-A-ACA---TGTGCCTAGA--------------A-----------G-TGGT-C-TCAAA----------A----ACGAAA-TTTGTT-TTTCCAT-CGGGGGG-G--GGGCATT----------------------------------------G-GTGTTGTCC-TGGA-CTCGCTGG--AG-CC--TAG----GCGA-CC---ACAGA----CTCATC-------GC-----TTTATAT-TCACGTGGGTCG-CTAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GT---gcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|22 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggtttgcatttttttttttctggaaaaaaaagcataattgcttgcatattgca-CCC------T-CCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATGGTTTT-CCGCCAC-AG-GA--G---GCGG-GCATGCATTTTTCTTT--C--T------------GGAAAAa
gi|24 : ccaccTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gg
gi|3 : ------------AATA----AAA--------GC-----TGTC-GGA--A-CTA-ATTTAA-TCAAAA-CT-------TTTTT--TGTGAATTACGGCAT-CAATATAAAAATGC-----AAAGTTT-CTT------TTCA----TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATT-TTGCCAT-AG-GA--G---GCAGCGT--GC-CTTTTTTTC--T--G------------GAAAAAA-----TA-------CCGA-A-GTGTCATTTTCGTATAATTTCCAA-------------CTTTG-TTT---ATTT-A--TTGATTACGTTGAAGAA--TATT----AAA-AC---TCTTA--ATATGAAAGACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--------TTGTGTTTAA-T-T-ACG---TGTGCCTAGATATTGTTTCCT---A-----------G-TGAT-C-GACAA----------AACGTACGAAA-TCT-----------------------GGGCTTTGC-C-TCCCC----------------A---------------------------------GCTGG--AG-GC-TTTG----GCGGTCCTCGACCGT----CTCGTCTTAATGGGCCTACGCTTA-AT-T------GGTGCTTTCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--C
gi|4 : ctAACGCCTCCACTTTTAA----GAC-TATAT--------GTG--AA-----C--TCTTAACTT-AATTC-ATCTCTCTG-CTCGAAAAACTTTGATCAT----TCAAAACAGATTAGAAAATGAATTAACGAACTTGCA-AACAACCCTAACCCCTACAAACAACTCCAC--A---TCACGTCTACACCTTACCCGACGGTGACGAACACT--CCTGCGGAAAACAGCT-C----AAG-A-CCTCCGCACC-TGCATTTCCTCTTATCT--TGTATCT-TTTCCTCTTCTTTCAAGCCAC---TAAGTCTGAGCAATAACTCATTG-AATA----ATG--------GT-----TGTC-TGA--TAATA-AT-------AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-CCCCCTCCTC-CCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATGGCTTTCCCACCAGCAG-GACTA---GC-G-GTTGGCATTTTTTTTT--C--T------------AAAAAAA-----AA-------AGG------ATAAGTTGC------TT
gi|4 : tataGAAAT--CATTAA-GGAGATTCGTGCAAACTT----TTggaaatcattaaggagattcgtgcaaactttt
gi|5 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttgAACACTTTCCCTTT--AAATAGGCCTATAT--------AC---AA-----C--TCTT-ACTTTAATTC-ATCTCT----NTC--AACACTTT--CCCT----TTAAA
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcAACACTTTCCCTTT--AAATAGGCCTATATAAATGTATGTG--AATTTAAC--TCTT-ACTTTAATTC-ATCTCACCAACTCAGA-CACTTTGACCATGCATTCAAAACA-AACAGAAA-T-CATTCAC-AACTT--------------------GCCAACAACT---C----------------------------G-------ACACTGACCTG-GGAGAACAGCTCC----A-GCA-CC-CCACATC-TGCATCTCCTCTTATCTG-TA------TTTTCTCTCTtaggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtattttctctctaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcT-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-TT----TTGTGA---A-T-TTACA---TGTGCCTAGA--------------ATTTATTCCCAAG-TGAT-C-TCAAA----------AAC--ATGAAA-TCaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|6 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtaA-TA------------AATA----ACG--------GC-----TGTC-TGAA-T-ATA-ATT-AT-CCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA----------------C-CAAC--TGTTT----GTCAA-------------------TTTTT-TTAA-TGC--TT-CCACCAT-AG--A--G---GCAG-GTTCGG-----TTTTT--C--T------------GAAAAAA-----AA-------TAGT-TTGTTTTTGTTGTG-----TTTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCATAT-AATTTAATTAAACTGACAAAAATATTATTAA-------------------GAAAAAC-CTCTGG-----TAAAAAC---AA-AGTGGCTT-TTACTTTATTTATATTAAT-TTTT-TC--CCTCTA--AACAATATTT-ATGAA-AGAAACCCA---AAATTT----TGGTAT---A-TAT-ACAACATGTGCCTAGA--------------A-----------T-TGGTTC-CCAAATTATTTTCAAAAC--AAGAAA-TCTA-C-TCTCCGT-T----GG-A--CCCCCCCCC-C-CCCCCCCCCAA----------ACAACAACAACA-AG-GCGCTGCCT-TGGA-CCCGCTG
gi|7 : taattatgcAACATTTTCCTTTT--A----GGCCTATAT--------GTGTGAA-----T--TCTT-ACTTCAATTC-ATCTTTCTGAATC-GCACACTTTGACCAT----TCAAAACA-ATCAG-AAAT-CATGCAC-ACCTC-----ACAAT-----------TAAGCAACT---C-------C----C-------------GCG-------ACACT--CTGG-GGAAAACAGCTTTATAAAAGCA-CC------CT-TGTCCCTCCTCTTATCTG-CA----TCTTTTCTCTCTTT-CAAGCCTC---TTA-T---A-CAC-----------AATATTTCACGTGAATTTAGTACTAGTATC-TGATGT-ATA-A-T-AG-TTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCt
gi|8 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAAAATT--CCACCAG-AG-GA--G---GCAG-GTTTGCATTTTTTTTC--T----------------AAAAAACCCATAATTATATTAAG-------TTAATTGC------TTGCATA-------------TTTTT-TCGC-TATTTTAA---GATCATGCTGAAAAAAATATT-TTAAAACAC---T--TA--AG--GAAAGGC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGT---G-T-T-ACA---TGTGCCTAGA--------------A-----------G-TGAT-C-TCAAA----------AAC--ACGAAA-TCTG-T-TTTCCAT-C-----G-G--GGACATTGCAT-CCCCC----------------AC--------CA-TT-GCGTTGCCC-TGGA-CTCGCTGG--AGCCC-TCAG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-G------GGTGC-CTATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gac
gi|9 : AACACATTCTCTTG--A----GACCTATAT--------GTG--AA-----CACTCTT-ACTTTAATGC-ATCT------------ACACTTTGACCAT----TCAGAACA-A-TAAAAAAT-CATTCTC-AACTCTCATAACA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 2222 22222222 111 11111111 111111111 1111 4444 222222 99999999999999999999999999999999999999999 22222 1 3333333333333333 1 1111111111111111111111111111111111111111 111111111111111 11111 11 11111 2222222 11 11 22222222 22222222222222 111111 22222222222222222222 55555555555555555555555555555555 3333333333333 111 444444444444444444444444 11111 111111 1111 1111111 111 1111111 111 88888888888888888888888888 1111111111 111 111111111111 77777777777777777777777777777777777777777777777 222222222 1111 3333333333333333333333333333333 111 222 1
lowQualScore : 0 0 5 4444 00000000 222 44444444 0 0 5 555555555 1 2222 6 3 6 6 0000 000000 22 44444444444444444444444444444444444444444 0 77 8 5 2 55555 1 777 99999 6666666666666666 5 3 1 3333333333333333333333333333333333333333 888888888888888 22222 5 11 5 55555 5 6 1111111 55 55 1 1 444 333 5 00000000 66 0 5 1 0 77777777777777 5 0 66 88 5 5 000000 5 5 0 3 99999999999999999999 66666666666666666666666666666666 5 5 0 1 6666666666666 8 222 8 66 1 66 555555555555555555555555 8 66666 666666 6 5555 6666666 5 5 66 3 3 0 1 8 888 0000000 222 4 4 777 00000000000000000000000000 4 4 4 7777777777 55 4 111 1 777777777777 1 2 00000000000000000000000000000000000000000000000 1 0 5 5 3 77 5 444444444 6 4444 1 1 0000000000000000000000000000000 000 1 5 3 5 77 5 5 77 6 333 5
lowQualScore : . . . .... ........ ... ........ . . . ......... . .... . . . . .... ...... .. ......................................... . .. . . . ..... . ... ..... ................ . . . ........................................ ............... ..... . .. . ..... . . ....... .. .. . . ... ... . ........ .. . . . . .............. . . .. .. . . ...... . . . . .................... ................................ . . . . ............. . ... . .. . .. ........................ . ..... ...... . .... ....... . . .. . . . . . ... ....... ... . . ... .......................... . . . .......... .. . ... . ............ . . ............................................... . . . . . .. . ......... . .... . . ............................... ... . . . . .. . . .. . ... .
lowQualScore : 7 3 7 3333 77777777 111 44444444 7 1 7 111111111 4 1111 7 5 7 7 5555 666666 11 00000000000000000000000000000000000000000 7 99 4 7 7 99999 4 111 44444 7777777777777777 7 3 0 2222222222222222222222222222222222222222 999999999999999 55555 0 99 0 55555 0 7 7777777 88 88 4 0 999 777 7 33333333 99 4 0 0 1 88888888888888 0 4 99 22 0 0 888888 1 0 4 2 88888888888888888888 11111111111111111111111111111111 7 7 6 0 7777777777777 0 444 0 44 4 44 000000000000000000000000 0 77777 888888 7 2222 2222222 0 0 99 2 5 1 6 0 111 8888888 222 4 4 888 44444444444444444444444444 4 4 0 5555555555 55 0 333 1 444444444444 0 5 44444444444444444444444444444444444444444444444 4 8 0 0 9 99 7 777777777 6 9999 3 6 0000000000000000000000000000000 222 7 7 0 7 99 7 7 99 7 333 0
consensus : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC--A---TC----CCAC---------------GACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCA-CC-CCGCACCTGCATCTCCT--CTTATCT-G-TAT-TTTT--CTCT-CTTT-CAAGCCNC---TAA-TC-GA---------CA-----T-----CG----AATA----ANG--------GT-----TGTC-TGA--TA-TA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-CCC------C-CAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCATTTTTTTT---TC--T------------GAAAAAA-----A----A-------AAGA--G-CATT--AGT-TGC-TTTCNTA-------------TTTTT-TTTT-CA-TTTAATTTGATTACGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AN--GAAAGAC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T-ACA---TGTGCCTAGA--------------A-----------G-TGAT-C-TCAAA----------AAC--ACGAAA-TCTG-T-TTTCCGT-C----GG-G--GGGCNTTGCA----C-CCCC-----------C------AC--------CA-N--G-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGACTCATC-------GC-----CTTA-AT-T------GGTGC-C-TATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( family-1811 ) : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTC---A---TC----CCAC---------------GACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCA-CC-CCGCACCTGCATCTCCT--CTTATCT-G-TAT-TTTT--CTCT-CTTT-CAAGCCNC---TAA-TC-GA---------CA-----C-----CA----AATA----ANG--------GT-----TGTC-TGA--TA-TA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-CCC------C-CAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCATTTTTTTT---TT--T------------GAAAAAA-----A----A-------AAGA--G-CATT--AGT-TGC-TTTCNTA-------------TTTTT-TTTT-CA-TTTAATTTGATTACGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AN--GAAAGAC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T-ACA---TGTGCCTAGA--------------A-----------G-TGAT-C-TCAAA----------AAC--ACGAAA-TCTG-T-TTTCCGT-C----GG-G--GGGCNTTGC-----C-CCCC-----------C------AC--------CA-N--G-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGACTCATC-------GC-----CTTA-AT-T------GGTGC-C-TATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
gi|1 : AACGCCTCC-CCTTTA----GACCTATAT--------GTG--AA-----C--TCTTACTT-AATCC-ATCTCTCTGACTCAGAAC-CTTTGATCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-GACTCGCA-AACAACCCCCACCCTCGCAAACAACTCCC-ACCTTC----CCAC---------------GACGTA-CACT--CCTG-GGAAAACCGCTC-----AAGCA-CC-C-GCACCTGCATCTCCT--CTTATCT-GGTGTCTTTT--CTCT-CTTT-CAAGCCAC---TAA-TT-GA---------CA-----------------AATG-----GG--------GT-----TGTC-TGA--TA-TA--TC-AA-TCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-CCC------C-CAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATATATTT-CCATCAG-AG-GA--T---GCAG-GTTTGCATTTTTTTT---TT--TTTTTTTTTTTCGGAAAAAA-----A----A-------AAGAGGG-CATT--ATT-TGC-TTTCCTT-------------TTTTT-TTTT-CA-TTTAATTTTTTTATGCTGAAAAAAATATT-TTAAAA-AC---T--TA--AG--GAAAGGC-CTCTGG-----TTAAAAG---AT-ATTGAATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGTA--AA-T-ACA---TGTGTCTAGA--------------A-----------G-TAAT-C-TCAAA----------AAC--GCGAAA-TCTG-G-TTTCCAT-C----GG-G--GGGCATTGCA----T-CCCC-----------C------AC--------CA-G--G-GCGTTG-CCCTGGA-CTCGTTGG--AG-CCGTTGG----GCAACCG---ACAGACTCATC-------GC-----CTTA-AT-T------GGTGC-C-TATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATG
gi|10 : TTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-TG----TTGTGT---AT-T-ACA---TGTTCATGGAGAATTTGTTCTCCAA-----------G-TGAT-CGTCCAA----------AAC--ACGACACTCTG-T-TTTCCGT-C----TG-G--GGACTTTGC-----C-CCCCAAGGA------C------AC--------CA-TTCG-G----G-TCTTGGG-C---------AG-CC-CCAGA---GTGGCCC--------CTCA---------AC-----CTTA-ATCT------GGTGT-AATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGtcagc
gi|11 : TA-------------TTTTT-CCGT-CA-TTTAATTTGATTACTCTGAAAAAA-TATT-----AA-ACATTT--TATTAC--GAAAGAC-CTCTGC---------AAG-------------T-GTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-TT----TTGCGT---AT-T-ACG---TGTGCCTAGA--------------ATTTGTTCCCAAG-TGAT-C-TTACA----------AAC--ACGAAA-TCTG-T-TTACCaatcgg
gi|14 : ttggtaTCATTAA-GGAGATTCGTGCAAACTT----TTGTGT---AT-T--TA---CTTGCCTAAA--------------A-----------GTTGAT-C-TCAAA----------AAC--ACGAAA-TCTGTT-TTTCCAT-C----GA-GTTGGGCATTGC-----CATCCC-----------C------AC--------CATT--T-GCGTTG-CTTAGGA-CTCGCTGG--AG-CC-C----------------------CTCA-------------------------------GGTGC-C-TATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-Gtcccgga
gi|15 : aCTCACAAACAAC-----A---TC----CCAC---------------GAC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACCC-CCGCACCTGCATCT------TTA----------------CTCT-CTTTACAAGCCTCGGTTAA-TC-AA---------CAATAGTT-----CAGGTGAATA----AAG--------GT-----TGGA-TGA--TA-TG-A-T-AA-T
gi|16 : aaattcatgcacaaaCTCACAAACAAC-----A---TC----CCAC---------------GAC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACCC-CCGCACCTGCATCT------TTA----------------CTCT-CTTTACAAGCCTCGGTTAA-TC-AA---------CAATAGTT-----CAGGTGAATA----AAG--------GT-----TGGA-TGA--TA-TG-A-T-AA-Tttcaaaccagt
gi|17 : aaattcatgcacaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCCCC------C-CAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATGGCTTT-CCACCAG-AG-GA--GCTAGCAG-GTTTGCATTTTTTTTTTCTT--T------------AAAAAAA-----A----A-------AAAA--G-CATA--AGT-TGC-TTttcaaaccagt
gi|18 : -TCCAA----------AAC--AAGAAA-CCTG-TCTTTCCGTAC----AGTG--GAGCTCCCCACCCCC-CCCCCACCCCAACTCC------AC--------CA-A--GCGCGCTGCCCCTGGACCCCACTGAGCGG-CC-TTTGCTTAGCGAGCT---CCAGACCCCTC-------AC-----
gi|2 : aaTCC-ATTTTA----GAC-TATAT--------GT---AA-----C--TCTTA--TTAATTCCATCTCTCTGACTCAAA---CTTTGATCAT----TCAAAA---ATTAAATAATCA----------------AACAAACTCAACCCTTG-AAACAACTCCC-ACCTTC----CCA----------------GACA-A-C--T--CCTG-GGAAAACAGCTC-----AAGCA-CC-GCACGCC---ATTCTCTGCCTT---T-G-TAT-GTTT--CTCT-CTTT-CAAGCAAC-----A-TT-GA---------CA-----TATTCACATTG-AATA----ATG--------GT-----TGTAATGA--TA-TATATT-AAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-CCC------A-CAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAAATGCTTT---CA--AG-AGAAA--G---GC-G-GTTTGCATTTTTTTT---TTTCT------------GGAAAAA-----A----A----------A--G-CA-T--AAT-TGC-TTGCATA-------------TTt
gi|2 : TCTGG-----TTAAA-G---AT-ATTTGATT-GTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATTT----GTGTGT---AT-A-ACA---TGTGCCTAGA--------------A-----------G-TGGT-C-TCAAA----------A----ACGAAA-TTTGTT-TTTCCAT-CGGGGGG-G--GGGCATT-----------------------------------------------G-GTGTTG-TCCTGGA-CTCGCTGG--AG-CC--TAG----GCGA-CC---ACAGACTCATC-------GC-----TTTATAT-TCACGTGGGTCG-C-TAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GT---gcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|22 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggtttgcatttttttttttctggaaaaaaaagcataattgcttgcatattgca-CCC------T-CCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATGGTTTT-CCGCCAC-AG-GA--G---GCGG-GCATGCATTTTTCTT---TC--T------------GGAAAAa
gi|24 : ccaccTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gg
gi|3 : ----AATA----AAA--------GC-----TGTC-GGA--AC-TA-ATTTAA-TCAAAA-CT-------TTTTT--TGTGAATTACGGCAT-CAATATAAAAATGC-----AAAGTTT-CTT------TTCA----TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATT-TTGCCAT-AG-GA--G---GCAGCGT--GC--CTTTTTT---TC--T------------GGAAAAA-----ATACCG-------AAGT--GTCATTTTCGTATAA-TTTCCAA-------------CTTTG-TTT---A-TTTA--TTGATTACGTTGAAGAA--TATT----AAA-AC---TCTTA--ATATGAAAGACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--------TTGTGTTTAAT-T-ACG---TGTGCCTAGATATTGTTTCCT---A-----------G-TGAT-C-GACAA----------AACGTACGAAA-TCT-----------------------GGGCTTTGC-----C-TCCC-----------C------A-----------------------------------GCTGG--AG-GC-TTTG----GCGGTCCTCGACCGTCTCGTCTTAATGGGCCTACGCTTA-AT-T------GGTGCTT-TCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--C
gi|4 : ctAACGCCTCCACTTTTA----AGACTATAT--------GTG--AA-----C--TCTTAACTTAATTC-ATCTCTCTG-CTCGAAAAACTTTGATCAT----TCAAAACAGATTAGAAAATGAATTAACGAACTTGCA-AACAACCCTAACCCCTACAAACAACTCCACA---TCACGTCTACACCTTACCCGACGGTGACG-AACACT--CCTGCGGAAAACAGCTC-----AAG-A-CCTCCGCACCTGCATTTCCT--CTTATCTTG-TAT-CTTTTCCTCTTCTTT-CAAGCCAC---TAAGTCTGAGCAATAACTCA-----T-----TG----AATA----ATG--------GT-----TGTC-TGA--TAATA-AT-------AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-CCCCCTCCTC-CCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATGGCTTTCCCACCAGCAG-GACTA---GC-G-GTTGGCATTTTTTTT---TC--T------------AAAAAAA-----A----A-------AGG------ATA--AGT-TGC-TT
gi|4 : tataGAAAT--CATTAA-GGAGATTCGTGCAAACTT----TTggaaatcattaaggagattcgtgcaaactttt
gi|5 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttgAACACTTTC-CCTTTAAATAGGCCTATAT--------AC---AA-----C--TCTTACTTTAATTC-ATCTCTNT--C----AACACTTT--CCCT----TTAAA
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcAACACTTTC-CCTTTAAATAGGCCTATATAAATGTATGTG--AATTTAAC--TCTTACTTTAATTC-ATCTCACCAACTCAGA-CACTTTGACCATGCATTCAAAACA-AACAGAAA-TCA-TTCAC-AACTT--------------------GCCAACAACTC-----------------------------------G-A-CACTGACCTG-GGAGAACAGCTCC----A-GCA-CC-CCACATCTGCATCTCCT--CTTATCT-G-TA--TTTT--CTCT-CTtaggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtattttctctctaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcT-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-TT----TTGTGA---AT-TTACA---TGTGCCTAGA--------------ATTTATTCCCAAG-TGAT-C-TCAAA----------AAC--ATGAAA-TCaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|6 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtaA----AATA----ACG--------GC-----TGTC-TGAA-TA-TA-ATT-AT-CCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA----------------C-CAAC--TGTTT----GTCAA-------------------TTTTT-TTAA-TGC--TT-CCACCAT-AG--A--G---GCAG-GTTCGG-----TTTT---TC--T------------GAAAAAA-----A----A-------TAGTTTG-TTTT--TGT-TGTGTTTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCA-TATAATTTAATTAAACTGACAAAAATATTATTAA-------------------GAAAAAC-CTCTGG-----TAAAAAC---AA-AGTGGCTT-TTACTTTATTTATATTAAT-TTTT-TC--CCTCTA--AACAATATTT-ATGAA-AGAAACCCA---AAATTT----TGGTAT---ATAT-ACAACATGTGCCTAGA--------------A-----------T-TGGTTC-CCAAATTATTTTCAAAAC--AAGAAA-TCTA-C-TCTCCGT-T----GG-A--CCCCCCCCC-----C-CCCC-----------CCCCCAAACAACAACAACA-A--G-GCGCTG-CCTTGGA-CCCGCTG
gi|7 : taattatgcatAACATTTTC-CTTTTA----GGCCTATAT--------GTGTGAA-----T--TCTTACTTCAATTC-ATCTTTCTGAATC-GCACACTTTGACCAT----TCAAAACA-ATCAG-AAATCA-TGCAC-ACCTC-----ACAAT-----------TAAGCAACTC--------C----C-------------------GCG-A-CACT--CTGG-GGAAAACAGCTTTATAAAAGCA-CC------CTTGTCCCTCCT--CTTATCT-G-CATCTTTT--CTCT-CTTT-CAAGCCTC---TTA-T---A---------CA-----C-----------AATATTTCACGTGAATTTAGTACTAGTATC-TGATGTA-TA-A-T-AG-TTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCt
gi|8 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAAAATT--CCACCAG-AG-GA--G---GCAG-GTTTGCATTTTTTTT---CT----------------AAAAAACCCATA----ATTATATTAAG-------TT--AAT-TGC-TTGCATA-------------TTTTT-TCGC-TATTTTAA---GATCATGCTGAAAAAAATATT-TTAAAACAC---T--TA--AG--GAAAGGC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGT---GT-T-ACA---TGTGCCTAGA--------------A-----------G-TGAT-C-TCAAA----------AAC--ACGAAA-TCTG-T-TTTCCAT-C-----G-G--GGACATTGCA----T-CCCC-----------C------AC--------CA-T--T-GCGTTG-CCCTGGA-CTCGCTGG--AGCCC-TCAG----GCGACCC---ACAGACTCATC-------GC-----CTTA-AT-G------GGTGC-C-TATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gac
gi|9 : AACACATTC-TCTTGA----GACCTATAT--------GTG--AA-----CACTCTTACTTTAATGC-ATCT------------ACACTTTGACCAT----TCAGAACA-A-TAAAAAATCA-TTCTC-AACTCTCATAACA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 2222 22222222 111 11111111 111111111 1111 4444 222222 888888888888888888888888888888888888888888 22222 1 3333333333333333 1 22222222222222222222222222222222222222222222222 11 11111 2222222 11 11 111111 22222222222222 111111 111 222222222222 4444444444444444444 3333333333333 111 44444444444444444444 11111 11111111 1111 1111111 111 1111111 111 88888888888888888888888888 1111111111 111 7777777777777777777777777777777 111111111 1111 1111 33333333333333333333333333333 1 222 1
lowQualScore : 0 0 5 4444 00000000 222 44444444 0 0 5 555555555 1 2222 6 3 6 6 0000 000000 22 999999999999999999999999999999999999999999 0 77 8 5 2 55555 1 777 99999 6666666666666666 5 3 1 55555555555555555555555555555555555555555555555 66 1 66 5 11 5 55555 5 6 1111111 55 55 1 1 1 444 333 5 5 666666 4 66 0 5 1 0 77777777777777 5 0 66 88 5 5 000000 5 5 000 888 555555555555 888 3333333333333333333 5 5 0 1 6666666666666 8 222 8 66 1 11 0 55555555555555555555 3 8 66666 22222222 6 5555 6666666 5 5 66 3 3 0 1 8 888 0000000 222 4 4 777 00000000000000000000000000 4 4 4 7777777777 55 4 111 1 5 4 7777 1 6 0 0000000000000000000000000000000 0 888 5 77 5 444444444 6 4444 2222 33333333333333333333333333333 3 1 5 3 5 77 5 5 77 6 333 5
lowQualScore : . . . .... ........ ... ........ . . . ......... . .... . . . . .... ...... .. .......................................... . .. . . . ..... . ... ..... ................ . . . ............................................... .. . .. . .. . ..... . . ....... .. .. . . . ... ... . . ...... . .. . . . . .............. . . .. .. . . ...... . . ... ... ............ ... ................... . . . . ............. . ... . .. . .. . .................... . . ..... ........ . .... ....... . . .. . . . . . ... ....... ... . . ... .......................... . . . .......... .. . ... . . . .... . . . ............................... . ... . .. . ......... . .... .... ............................. . . . . . .. . . .. . ... .
lowQualScore : 7 3 7 3333 77777777 111 44444444 7 1 7 111111111 4 1111 7 5 7 7 5555 666666 11 444444444444444444444444444444444444444444 7 99 4 7 7 99999 4 111 44444 7777777777777777 7 3 0 22222222222222222222222222222222222222222222222 99 0 99 0 99 0 55555 0 7 7777777 88 88 4 7 0 999 777 7 7 444444 9 99 4 0 0 1 88888888888888 0 4 99 22 0 0 888888 1 0 111 888 666666666666 888 4444444444444444444 7 7 6 0 7777777777777 0 444 0 44 4 44 8 44444444444444444444 8 0 77777 88888888 7 2222 2222222 0 0 99 2 5 1 6 0 111 8888888 222 4 4 888 44444444444444444444444444 4 4 0 5555555555 55 0 333 1 0 5 0000 0 1 2 0000000000000000000000000000000 8 666 0 99 7 777777777 6 9999 1111 66666666666666666666666666666 3 7 7 0 7 99 7 7 99 7 333 0
consensus : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-ACG---ACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCA-CC-CCGCACCTGCATCTCCT--CTTATCT-G-TAT-TTTT--CTCT-CTTT-CAAGCCNCG-T----TAA-T---C-GA---------CA-----T------C----GAA--TAANGGT--TGTC-TGA--TA-TA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATT-TTAAAA-A--C---TTA-TANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T-ACA---TGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCCCC---------------AC--------CA-NG-GCGTTGCCC-TGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( family-1811 ) : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-ACG---ACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCA-CC-CCGCACCTGCATCTCCT--CTTATCT-G-TAT-TTTT--CTCT-CTTT-CAAGCCNC-------TAA-T---C-GA---------CA-----T------C----GAA--TAANGGT--TGTC-TGA--TA-TA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATT-TTAAAA-A--C---TTA--ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T-ACA---TGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTTGCACCCCCC---------------AC--------CA-NG-GCGTTGCCC-TGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
gi|1 : AACGCCTCC-CCTTTA----GACCTATAT--------GTG--AA-----C--TCTTACTT-AATCC-ATCTCTCTGACTCAGAAC-CTTTGATCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-GACTCGCA-AACAACCCCCACCCTCGCAAACAACTCCCACCTT-----------------CCC-ACG---ACGTA-CACT--CCTG-GGAAAACCGCTC-----AAGCA-CC-C-GCACCTGCATCTCCT--CTTATCT-GGTGTCTTTT--CTCT-CTTT-CAAGCCAC-------TAA-T---T-GA---------CA------------------AA--TG-GGGT--TGTC-TGA--TA-TA--TC-AA-TCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-C-CC------CCAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATATATTT-CCATCAG-AG-GA--T---GCAG-GTTTGCA--TTTTTTTT---TTTTTTTTTTTTTCGGAAAAA---AA----AA--AGAGGG-CA--TTATT-TGC-TTTCCTT-------------TTTTT-TTTT-CATTT-AATTTTTTTATGCTGAAAAAAATATT-TTAAAA-A--C---TTA--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGAA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGTA--AA-T-ACA---TGTGTCTAGA--------------A-----------G-TAA-TC-TCA----------AAAAC--GCGAAA-TCTG-G-TTTCCAT-CGG-G--GGGCATTGCATCCCCC---------------AC--------CA-GG-GCGTTGCCC-TGGA-CTCGTTGG--AG-CCGTTGG----GCAACCG---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATG
gi|10 : TTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-TG----TTGTGT---AT-T-ACA---TGTTCATGGAGAATTTGTTCTCCAA-----------G-TGA-TCGTCC----------AAAAC--ACGACACTCTG-T-TTTCCGT-CTG-G--GGACTTTG--CCCCCC---------------A----------A-GG-AC---ACC-----A-TTC----G--GG-TC-TTGG----GCAGCCC----CAGAGTGGCCCCTCA------AC-----CTTA-ATCT------GGTGTAATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGtcagc
gi|11 : TA-------------TTTTT-CCGT-CATTT-AATTTGATTACTCTGAAAAAA-TATT-----AA-A--CATTTTATTACGAAAGAC-CTCTG-----C----A---AG-----------TGTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-TT----TTGCGT---AT-T-ACG---TGTGCCTAGA--------------ATTTGTTCCCAAG-TGA-TC-TTA----------CAAAC--ACGAAA-TCTG-T-TTACCaatcgg
gi|14 : ttggtaTCATTAA-GGAGATTCGTGCAAACTT----TTGTGT---AT-T--TA---CTTGCCTAAA--------------A-----------GTTGA-TC-TCA----------AAAAC--ACGAAA-TCTGTT-TTTCCAT-CGA-GTTGGGCATTGCCATCCCC---------------AC--------CATTT-GCGTTGCTT-AGGA-CTCGCTGG--AG-CC-C--------------------------CTCA-------------------------------GGTGC-CTATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-Gtcccgga
gi|15 : aCTCACAAACAAC----A---T-----------------CCC-ACG---AC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACCC-CCGCACCTGCATCT------TTA----------------CTCT-CTTTACAAGCCTCGGT----TAA-T---C-AA---------CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--TA-TG-A-T-AA-T
gi|16 : aaattcatgcacaaaCTCACAAACAAC----A---T-----------------CCC-ACG---AC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACCC-CCGCACCTGCATCT------TTA----------------CTCT-CTTTACAAGCCTCGGT----TAA-T---C-AA---------CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--TA-TG-A-T-AA-Tttcaaaccagt
gi|17 : aaattcatgcacaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCC-CC------CCAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATGGCTTT-CCACCAG-AG-GA--GCTAGCAG-GTTTGCA--TTTTTTTTTTCTTT------------AAAAAA---AA----AA--AAA--G-CA--TAAGT-TGC-TTttcaaaccagt
gi|18 : -TCC----------AAAAC--AAGAAA-CCTG-TCTTTCCGTACAGTG--GAGCTCCCCACCCCCCCCCCACCCCAACTCCAC--------CA-AGCGCGCTGCCCCTGGACCCCACTGAGCGG-CC-TTTGCTTAGCGAGCT---CCAGA----CCCCTC-------AC-----
gi|2 : aaTCC-ATTTTA----GAC-TATAT--------GT---AA-----C--TCTTA--TTAATTCCATCTCTCTGACTCAAA---CTTTGATCAT----TCAAAA---ATTAAATAATCA----------------AACAAACTCAACCCTTG-AAACAACTCCCACCTT-----------------CCC-A-G---ACA-A-C--T--CCTG-GGAAAACAGCTC-----AAGCA-CC-GCACGCC---ATTCTCTGCCTT---T-G-TAT-GTTT--CTCT-CTTT-CAAGCAACATTGACATAT-T---C--A---------CA-----T------T----GAA--TAATGGT--TGTAATGA--TA-TATATT-AAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-C-CC------ACAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAAATGCTTT---CA--AG-AGAAA--G---GC-G-GTTTGCATTTTTTTTTT---TCT------------GGAAAA---AA----A-----A--G-CA---TAAT-TGC-TTGCATA-------------TTt
gi|2 : TCTG-----GTTAAA----GAT-ATTTGA-TTGTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATTT----GTGTGT---AT-A-ACA---TGTGCCTAGA--------------A-----------G-TGG-TC-TCA----------AAA----ACGAAA-TTTGTT-TTTCCAT-CGG-G--GGG-GGGGCAT---------------------------------TG-GTGTTGTCC-TGGA-CTCGCTGG--AG-CC--TAG----GCGA-CC---ACAGA----CTCATC-------GC-----TTTATAT-TCACGTGGGTCG-CTAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GT---gcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|22 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggtttgcatttttttttttctggaaaaaaaagcataattgcttgcatattgca-C-CC------TCCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATGGTTTT-CCGCCAC-AG-GA--G---GCGG-GCATGCA--TTTTTCTT---TCT------------GGAAAA---a
gi|24 : ccaccTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gg
gi|3 : AA--TAAAAGC--TGTC-GGA--AC-TA-ATTTAA-TCAAAA-CT-------TTTTT--TGTGAATTACGGCA-TCAATATAAAAATGC-----AAAGTTT-CTTT------TC--A--TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATT-TTGCCAT-AG-GA--G---GCAGCG--TGC----CTTTTTT---TCT------------GGAAAA---AATACCGA--AGT--GTCATTTTCGTATAA-TTTCCAA-------------CTTTG-TTT---ATTT-A--TTGATTACGTTG--AAGAATATT----AAA-ACTC---TTAATATGAAAGACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--------TTGTGTTTAAT-T-ACG---TGTGCCTAGATATTGTTTCCT---A-----------G-TGA-TC-GAC----------AAAACGTACGAAA-TCT-------------------GGGCTTTGC-CTCCCC---------------A---------------------------------GCTGG--AG-GC-TTTG----GCGGTCCTCGACCGT----CTCGTCTTAATGGGCCTACGCTTA-AT-T------GGTGCTTTCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--C
gi|4 : ctAACGCCTCCACTTTTA----AGACTATAT--------GTG--AA-----C--TCTTAACTTAATTC-ATCTCTCTG-CTCGAAAAACTTTGATCAT----TCAAAACAGATTAGAAAATGAATTAACGAACTTGCA-AACAACCCTAACCCCTACAAACAACTCC-A---CATCACGTCTACACCTTACCCGACGGTGACG-AACACT--CCTGCGGAAAACAGCTC-----AAG-A-CCTCCGCACCTGCATTTCCT--CTTATCTTG-TAT-CTTTTCCTCTTCTTT-CAAGCCAC-------TAAGT---CTGAGCAATAACTCA-----T------T----GAA--TAATGGT--TGTC-TGA--TAATA-AT-------AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-C-CCCCTCCTCCCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATGGCTTTCCCACCAGCAG-GACTA---GC-G-GTTGGCA--TTTTTTTT---TCT------------AAAAAA---AA----AA--GG------A--TAAGT-TGC-TT
gi|4 : tataGAAAT--CATTAA-GGAGATTCGTGCAAACTT----TTggaaatcattaaggagattcgtgcaaactttt
gi|5 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttgAACACTTTC-CCTTTAAATAGGCCTATAT--------AC---AA-----C--TCTTACTTTAATTC-ATCTCTNT--C----AACACTTT--CCCT----TTAAA
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcAACACTTTC-CCTTTAAATAGGCCTATATAAATGTATGTG--AATTTAAC--TCTTACTTTAATTC-ATCTCACCAACTCAGA-CACTTTGACCATGCATTCAAAACA-AACAGAAA-TCA-TTCAC-AACTT--------------------GCCAACAACTC------------------------------------G-A-CACTGACCTG-GGAGAACAGCTCC----A-GCA-CC-CCACATCTGCATCTCCT--CTTATCT-G-TA--TTTT--CTCT-CTtaggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtattttctctctaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcT-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-TT----TTGTGA---AT-TTACA---TGTGCCTAGA--------------ATTTATTCCCAAG-TGA-TC-TCA----------AAAAC--ATGAAA-TCaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|6 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtaAA--TAACGGC--TGTC-TGAA-TA-TA-ATT-AT-CCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA-----------------CCAAC--TGTTT----GTCAA-------------------TTTTT-TTAA-TGC--TT-CCACCAT-AG--A--G---GCAG-GTTCGG-------TTTT---TCT------------GAAAAA---AA----AT--AGTTTG-TT--TTTGT-TGTGTTTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCATAT-AATTTAATTAAACTGACAAAAATATTATTAA-----------------GAAAAAC-CTCTG-----GTAAAA---ACAA-AGTGGC-TTTTACTTTATTTATATTAAT-TTTT-TC--CCTCTA--AACAATATTT-ATGAA-AGAAACCCA---AAATTT----TGGTAT---ATAT-ACAACATGTGCCTAGA--------------A-----------T-TGGTTC-CCAAATTATTTTCAAAAC--AAGAAA-TCTA-C-TCTCCGT-TGG-A--CCCCCCCCCCCCCCCCCCCAA----------ACAACAACAACA-AG-GCGCTGCCT-TGGA-CCCGCTG
gi|7 : taattatgcataAACATTTTC-CTTTTA----GGCCTATAT--------GTGTGAA-----T--TCTTACTTCAATTC-ATCTTTCTGAATC-GCACACTTTGACCAT----TCAAAACA-ATCAG-AAATCA-TGCAC-ACCTC-----ACAAT-----------TAAGCAACTCC----------------------------CG----CG-A-CACT--CTGG-GGAAAACAGCTTTATAAAAGCA-CC------CTTGTCCCTCCT--CTTATCT-G-CATCTTTT--CTCT-CTTT-CAAGCCTC-------TTA-TACAC-AA---------TA-----TTTCACGT----GAATTTAGTACTAGTATC-TGATGTA-TA-A-T-AG-TTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCt
gi|8 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAAAATT--CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT----CT------------AAAAAACCCAT----AATTATA--T-TAAGTTAAT-TGC-TTGCATA-------------TTTTT-TCGC-TATTTTAA---GATCATGCTGAAAAAAATATT-TTAAAACA--C---TTA--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGT---GT-T-ACA---TGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCAT-C-G-G--GGACATTGCATCCCCC---------------AC--------CA-TT-GCGTTGCCC-TGGA-CTCGCTGG--AGCCC-TCAG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-G------GGTGC-CTATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gac
gi|9 : AACACATTC-TCTTGA----GACCTATAT--------GTG--AA-----CACTCTTACTTTAATGC-ATCT------------ACACTTTGACCAT----TCAGAACA-A-TAAAAAATCA-TTCTC-AACTCTCATAACA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 2222 22222222 111 11111111 111111111 1111 4444 222222 9999999999999999999999999999999999999999 11111 1111 4444444444444 1 1111111111111111111111111111111111111111111 11 11111 2222222 11 11 111111 22222222222222 111111 111 222222222222 4444444444444444444 3333333333333 111 55555555555555555555 11111 11111111 1111 1111111 111 1111111 111 111 88888888888888888888888888 1111111111 111 55555555555555555555555555555555555555 111111111 1111 1111 33333333333333333333333333333 1 222 1
lowQualScore : 0 0 5 4444 00000000 222 44444444 0 0 5 555555555 1 2222 6 3 6 6 0000 000000 22 1111111111111111111111111111111111111111 0 77 8 5 2 88888 8888 99999 1111111111111 5 3 1 1111111111111111111111111111111111111111111 66 1 66 5 11 5 55555 5 6 1111111 55 55 1 1 1 444 333 5 5 666666 4 66 0 5 1 0 77777777777777 5 0 66 88 5 5 000000 5 5 000 888 555555555555 888 3333333333333333333 5 5 0 1 6666666666666 8 222 8 66 1 11 0 44444444444444444444 1 8 66666 22222222 6 5555 6666666 5 5 66 3 6 0 1 8 888 0000000 222 4 222 00000000000000000000000000 4 4 4 7777777777 55 4 111 1 5 4 7777 1 3 6 0 66666666666666666666666666666666666666 0 5 33 5 77 5 444444444 6 4444 2222 33333333333333333333333333333 3 1 5 3 5 77 5 5 77 6 333 5
lowQualScore : . . . .... ........ ... ........ . . . ......... . .... . . . . .... ...... .. ........................................ . .. . . . ..... .... ..... ............. . . . ........................................... .. . .. . .. . ..... . . ....... .. .. . . . ... ... . . ...... . .. . . . . .............. . . .. .. . . ...... . . ... ... ............ ... ................... . . . . ............. . ... . .. . .. . .................... . . ..... ........ . .... ....... . . .. . . . . . ... ....... ... . ... .......................... . . . .......... .. . ... . . . .... . . . . ...................................... . . .. . .. . ......... . .... .... ............................. . . . . . .. . . .. . ... .
lowQualScore : 7 3 7 3333 77777777 111 44444444 7 1 7 111111111 4 1111 7 5 7 7 5555 666666 11 6666666666666666666666666666666666666666 7 99 4 7 7 77777 6666 44444 0000000000000 7 3 0 7777777777777777777777777777777777777777777 99 0 99 0 99 0 55555 0 7 7777777 88 88 4 7 0 999 777 7 7 444444 9 99 4 0 0 1 88888888888888 0 4 99 22 0 0 888888 1 0 111 888 666666666666 888 4444444444444444444 7 7 6 0 7777777777777 0 444 0 44 4 44 8 88888888888888888888 0 0 77777 88888888 7 2222 2222222 0 0 99 2 4 1 6 0 111 8888888 222 4 222 44444444444444444444444444 4 4 0 5555555555 55 0 333 1 0 5 0000 0 1 1 2 22222222222222222222222222222222222222 8 0 66 0 99 7 777777777 6 9999 1111 66666666666666666666666666666 3 7 7 0 7 99 7 7 99 7 333 0
consensus : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAAT-CATTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-AC---GACG-ACACT--CCTG-GGAAAACGGCTCC----AAGCACC-CC-GCACCTGCATCTCCT--CTTATC-TG-TA--T-TTTTCTC-TCTTT-CAAGCCNC---G-T-TAA-----TCAA-----CA-----T------C----GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTTTAAAA-AC---TT---AT-ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( family-1811 ) : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAAT-CATTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-AC---GACG-ACACT--CCTG-GGAAAACGGCTCC----AAGCACC-CC-GCACCTGCATCTCCT--CTTATC-TG-TA--T-TTTTCTC-TCTTT-CAAGCCNC---G-T-TAA-----TCGA-----CA-----T------C----GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTTTAAAA-AC---TT---AT-ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
gi|1 : AACGCCTCC-CCTTTA----GACCTATAT--------GTG--AA-----C--TCTTACTT-AATCC-ATCTCTCTGACTCAGAAC-CTTTGATCAT----TCAAAACA-ATTAGAAAAT-CATTCAC-GACTCGCA-AACAACCCCCACCCTCGCAAACAACTCCCACCTT-----------------CCC-AC---GACGTACACT--CCTG-GGAAAACCGCTC-----AAGCACC-C--GCACCTGCATCTCCT--CTTATC-TGGTG--TCTTTTCTC-TCTTT-CAAGCCAC-------TAA-----TTGA-----CA------------------AA--TG-GGGT--TGTC-TGA--T-ATA--TC-AA-TCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-C-CC------CCAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATATATTT-CCATCAG-AG-GA--T---GCAG-GTTTGCA--TTTTTTTT---TTTTTTTTTTTTTCGGAAAAA---AA----AA--AGAGGG-CA--TTATT-TGC-TTTCCTT-------------TTTTT-TTTT-CATTT-AATTTTTTTATGCTGAAAAAAATATTTTAAAA-AC---TT---A--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGAA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGTA--AA-T---ACATGTGTCTAGA--------------A-----------G-TAA-TC-TCA----------AAAAC--GCGAAA-TCTG-G-TTTCCAT-CGG-G--GGGCATTGCATCCC---------------CC-----AC--------CA-GG-GCGTTG-CCCTGGA-CTCGTTGG--AG-CCGTTGG----GCAACCG---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATG
gi|10 : TTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-TG----TTGTGT---AT-T---ACATGTTCATGGAGAATTTGTTCTCCAA-----------G-TGA-TCGTCC----------AAAAC--ACGACACTCTG-T-TTTCCGT-CTG-G--GGACTTTG--CCCC---------------CC-----A----------A-GG-AC---A-CC----A-TTC----G--GG-TC-TTGG----GCAGCCC----CAGAGTGGCCCCTCA------AC-----CTTA-ATCT------GGTGTAATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGtcagc
gi|11 : TA-------------TTTTT-CCGT-CATTT-AATTTGATTACTCTGAAAAAA-TATT----AA-ACATTTT---ATTACGAAAGAC-CTCTG-----C----A---AG-----------TGTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-TT----TTGCGT---AT-T---ACGTGTGCCTAGA--------------ATTTGTTCCCAAG-TGA-TC-TTA----------CAAAC--ACGAAA-TCTG-T-TTACCaatcgg
gi|14 : ttggtaTCATTAA-GGAGATTCGTGCAAACTT----TTGTGT---AT-T----TACTTGCCTAAA--------------A-----------GTTGA-TC-TCA----------AAAAC--ACGAAA-TCTGTT-TTTCCAT-CGA-GTTGGGCATTGCCATCC---------------CC-----AC--------CATTT-GCGTTG-CTTAGGA-CTCGCTGG--AG-CC-C--------------------------CTCA-------------------------------GGTGC-CTATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-Gtcccgga
gi|15 : aCTCACAAACAAC----A---T-----------------CCC-AC---GAC----AGT--CC-G-GGAAACAGGCTCC----AAGCACC-CCCGCACCTGCATCT------TTA----------------CTC-TCTTTACAAGCCTC---GGT-TAA-----TCAA-----CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-T
gi|16 : aaattcatgcacaaaCTCACAAACAAC----A---T-----------------CCC-AC---GAC----AGT--CC-G-GGAAACAGGCTCC----AAGCACC-CCCGCACCTGCATCT------TTA----------------CTC-TCTTTACAAGCCTC---GGT-TAA-----TCAA-----CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-Tttcaaaccagt
gi|17 : aaattcatgcacaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCC-CC------CCAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATGGCTTT-CCACCAG-AG-GA--GCTAGCAG-GTTTGCA--TTTTTTTTTTCTTT------------AAAAAA---AA----AA--AAA--G-CA--TAAGT-TGC-TTttcaaaccagt
gi|18 : -TCC----------AAAAC--AAGAAA-CCTG-TCTTTCCGTACAGTG--GAGCTCCCCACCCCCCCCCCACCCCAACTCC-----AC--------CA-AGCGCGCTGCCCCTGGACCCCACTGAGCGG-CC-TTTGCTTAGCGAGCT---CCAGA----CCCCTC-------AC-----
gi|2 : aaTCC-ATTTTA----GAC-TATAT--------GT---AA-----C--TCTTA--TTAATTCCATCTCTCTGACTCAAA---CTTTGATCAT----TCAAAA---ATTAAATAAT-CA---------------AACAAACTCAACCCTTG-AAACAACTCCCACCTT-----------------CCC-A----GACA-AC--T--CCTG-GGAAAACAGCTC-----AAGCACC-GC-ACGCC---ATTCTCTGCCTT----TG-TA--T-GTTTCTC-TCTTT-CAAGCAAC---A-T-TGACATATTC-A-----CA-----T------T----GAA--TAATGGT--TGTAATGA--T-ATATATT-AAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-C-CC------ACAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAAATGCTTT---CA--AG-AGAAA--G---GC-G-GTTTGCATTTTTTTTTT---TCT------------GGAAAA---AA----A-----A--G-CA---TAAT-TGC-TTGCATA-------------TTt
gi|2 : TCTG-----GTTAAA----GAT-ATTTGA-TTGTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATTT----GTGTGT---AT-A---ACATGTGCCTAGA--------------A-----------G-TGG-TC-TCA----------AAA----ACGAAA-TTTGTT-TTTCCAT-CGG-G--GGG-GGGGCAT--------------------------------------TG-GTGTTG-TCCTGGA-CTCGCTGG--AG-CC--TAG----GCGA-CC---ACAGA----CTCATC-------GC-----TTTATAT-TCACGTGGGTCG-CTAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GT---gcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|22 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggtttgcatttttttttttctggaaaaaaaagcataattgcttgcatattgca-C-CC------TCCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATGGTTTT-CCGCCAC-AG-GA--G---GCGG-GCATGCA--TTTTTCTT---TCT------------GGAAAA---a
gi|24 : ccaccTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gg
gi|3 : AA--TAAAAGC--TGTC-GGA--A-CTA-ATTTAA-TCAAAA-CT-------TTTTT--TGTGAATTACGGCA-TCAATATAAAAATGC-----AAAGTTT-CTTT------TC--A--TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATT-TTGCCAT-AG-GA--G---GCAGCG--TGC----CTTTTTT---TCT------------GGAAAA---AATACCGA--AGT--GTCATTTTCGTATAA-TTTCCAA-------------CTTTG-TTT---ATTT-A--TTGATTACGTTG--AAGAATATT---AAA-AC---TCTTAAT-ATGAAAGACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--------TTGTGTTTAAT-T---ACGTGTGCCTAGATATTGTTTCCT---A-----------G-TGA-TC-GAC----------AAAACGTACGAAA-TCT-------------------GGGCTTTGC-CTCC---------------CC-----A---------------------------------GCTGG--AG-GC-TTTG----GCGGTCCTCGACCGT----CTCGTCTTAATGGGCCTACGCTTA-AT-T------GGTGCTTTCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--C
gi|4 : ctAACGCCTCCACTTTTA----AGACTATAT--------GTG--AA-----C--TCTTAACTTAATTC-ATCTCTCTG-CTCGAAAAACTTTGATCAT----TCAAAACAGATTAGAAAATGAATTAACGAACTTGCA-AACAACCCTAACCCCTACAAACAACTCC-A---CATCACGTCTACACCTTACCCGACGGTGACGAACACT--CCTGCGGAAAACAGCT-C----AAG-ACCTCC-GCACCTGCATTTCCT--CTTATCTTG-TATCT-TTTCCTCTTCTTT-CAAGCCACTAAG-TCTGA-----GCAATAACTCA-----T------T----GAA--TAATGGT--TGTC-TGA--TAATA-AT-------AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-C-CCCCTCCTCCCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATGGCTTTCCCACCAGCAG-GACTA---GC-G-GTTGGCA--TTTTTTTT---TCT------------AAAAAA---AA----AA--GG------A--TAAGT-TGC-TT
gi|4 : tataGAAAT--CATTAA-GGAGATTCGTGCAAACTT----TTggaaatcattaaggagattcgtgcaaactttt
gi|5 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttgAACACTTTC-CCTTTAAATAGGCCTATAT--------AC---AA-----C--TCTTACTTTAATTC-ATCTCTNT--C----AACACTTT--CCCT----TTAAA
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcAACACTTTC-CCTTTAAATAGGCCTATATAAATGTATGTG--AATTTAAC--TCTTACTTTAATTC-ATCTCACCAACTCAGA-CACTTTGACCATGCATTCAAAACA-AACAGAAA-T-CATTCAC-AACTT--------------------GCCAACAACTC------------------------------------G-ACACTGACCTG-GGAGAACAGCTCC----A-GCACC-CC-ACATCTGCATCTCCT--CTTATC-TG-TA----TTTTCTC-TCTtaggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtattttctctctaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcT-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-TT----TTGTGA---AT-TT--ACATGTGCCTAGA--------------ATTTATTCCCAAG-TGA-TC-TCA----------AAAAC--ATGAAA-TCaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|6 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtaAA--TAACGGC--TGTC-TGAA-T-ATA-ATT-AT-CCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA-----------------CCAAC--TGTTT----GTCAA-------------------TTTTT-TTAA-TGC--TT-CCACCAT-AG--A--G---GCAG-GTTCGG-------TTTT---TCT------------GAAAAA---AA----AT--AGTTTG-TT--TTTGT-TGTGTTTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCATAT-AATTTAATTAAACTGACAAAAATATTAT----------------T-AAGAAAAAC-CTCTG-----GTAAAA---ACAA-AGTGGC-TTTTACTTTATTTATATTAAT-TTTT-TC--CCTCT--AAACAATATTT-ATGAA-AGAAACCCA---AAATTT----TGGTAT---ATATACAACATGTGCCTAGA--------------A-----------T-TGGTTC-CCAAATTATTTTCAAAAC--AAGAAA-TCTA-C-TCTCCGT-TGG-A--CCCCCCCCCCCCCC---------------CCCCCAAACAACAACAACA-AG-GCGCTG-CCTTGGA-CCCGCTG
gi|7 : taattatgcataAACATTTTC-CTTTTA----GGCCTATAT--------GTGTGAA-----T--TCTTACTTCAATTC-ATCTTTCTGAATC-GCACACTTTGACCAT----TCAAAACA-ATCAG-AAAT-CATGCAC-ACCTC-----ACAAT-----------TAAGCAACTCC----------------------------C---G-CG-ACACT--CTGG-GGAAAACAGCTTTATAAAAGCACC-------CTTGTCCCTCCT--CTTATC-TG-CA--TCTTTTCTC-TCTTT-CAAGCCTC---T-TATAC-----ACAA-----TA-----TTTCACGT----GAATTTAGTACTAGTATC-TGATGT-ATA-A-T-AG-TTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCt
gi|8 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAAAATT--CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT----CT------------AAAAAACCCAT----AATTATA--T-TAAGTTAAT-TGC-TTGCATA-------------TTTTT-TCGC-TATTTTAA---GATCATGCTGAAAAAAATATTTTAAAACAC---TT---A--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGT---GT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCAT-C-G-G--GGACATTGCATCCC---------------CC-----AC--------CA-TT-GCGTTG-CCCTGGA-CTCGCTGG--AGCCC-TCAG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-G------GGTGC-CTATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gac
gi|9 : AACACATTC-TCTTGA----GACCTATAT--------GTG--AA-----CACTCTTACTTTAATGC-ATCT------------ACACTTTGACCAT----TCAGAACA-A-TAAAAAAT-CATTCTC-AACTCTCATAACA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT
Alignments
lowQualScore : 2222 22222222 111 11111111 111111111 1111 4444 222222 888888888888888888888888888888888888888888 22222 1111 4444444444444 1 99999999999999999999999999999999999999999999 11 11111 2222222 11 11 111111 22222222222222 111111 111 222222222222 4444444444444444444 3333333333333 111 55555555555555555555 11111 11111111 1111 1111111 111 1111111 111 111 88888888888888888888888888 1111111111 111 55555555555555555555555555555555555555 111111111 1111 1111 33333333333333333333333333333 1 222 1
lowQualScore : 0 0 5 4444 00000000 222 44444444 0 0 5 555555555 1 2222 6 3 6 6 0000 000000 22 999999999999999999999999999999999999999999 0 77 8 5 2 55555 8888 99999 1111111111111 5 3 1 55555555555555555555555555555555555555555555 66 1 66 5 11 5 55555 5 6 1111111 55 55 1 1 1 444 333 5 5 666666 4 66 0 5 1 0 77777777777777 5 0 66 88 5 5 000000 5 5 000 888 555555555555 888 3333333333333333333 5 5 0 1 6666666666666 8 222 8 66 1 11 0 44444444444444444444 1 8 66666 22222222 6 5555 6666666 5 5 66 3 6 0 1 8 888 0000000 222 4 222 00000000000000000000000000 4 4 4 7777777777 55 4 111 1 5 4 7777 1 3 6 0 66666666666666666666666666666666666666 0 5 33 5 77 5 444444444 6 4444 2222 33333333333333333333333333333 3 1 5 3 5 77 5 5 77 6 333 5
lowQualScore : . . . .... ........ ... ........ . . . ......... . .... . . . . .... ...... .. .......................................... . .. . . . ..... .... ..... ............. . . . ............................................ .. . .. . .. . ..... . . ....... .. .. . . . ... ... . . ...... . .. . . . . .............. . . .. .. . . ...... . . ... ... ............ ... ................... . . . . ............. . ... . .. . .. . .................... . . ..... ........ . .... ....... . . .. . . . . . ... ....... ... . ... .......................... . . . .......... .. . ... . . . .... . . . . ...................................... . . .. . .. . ......... . .... .... ............................. . . . . . .. . . .. . ... .
lowQualScore : 7 3 7 3333 77777777 111 44444444 7 1 7 111111111 4 1111 7 5 7 7 5555 666666 11 444444444444444444444444444444444444444444 7 99 4 7 7 99999 6666 44444 0000000000000 7 3 0 77777777777777777777777777777777777777777777 99 0 99 0 99 0 55555 0 7 7777777 88 88 4 7 0 999 777 7 7 444444 9 99 4 0 0 1 88888888888888 0 4 99 22 0 0 888888 1 0 111 888 666666666666 888 4444444444444444444 7 7 6 0 7777777777777 0 444 0 44 4 44 8 88888888888888888888 0 0 77777 88888888 7 2222 2222222 0 0 99 2 4 1 6 0 111 8888888 222 4 222 44444444444444444444444444 4 4 0 5555555555 55 0 333 1 0 5 0000 0 1 1 2 22222222222222222222222222222222222222 8 0 66 0 99 7 777777777 6 9999 1111 66666666666666666666666666666 3 7 7 0 7 99 7 7 99 7 333 0
consensus : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-ACG---ACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCACC-CC-GCACCTGCATCTCCT--CTTATC-TG-TA--T-TTTTCTC-TCTTT-CAAGCCNC---G-T-TAA-----TCA-A-----CA-----T------C----GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTTTAAAA-AC---TT---AT-ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( family-1811 ) : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-ACG---ACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCACC-CC-GCACCTGCATCTCCT--CTTATC-TG-TA--T-TTTTCTC-TCTTT-CAAGCCNC---G-T-TAA-----TCA-A-----CA-----T------C----GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTTTAAAA-AC---TT---AT-ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
gi|1 : AACGCCTCC-CCTTTA----GACCTATAT--------GTG--AA-----C--TCTTACTT-AATCC-ATCTCTCTGACTCAGAAC-CTTTGATCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-GACTCGCA-AACAACCCCCACCCTCGCAAACAACTCCCACCTT-----------------CCC-ACG---ACGTA-CACT--CCTG-GGAAAACCGCTC-----AAGCACC-C--GCACCTGCATCTCCT--CTTATC-TGGTG--TCTTTTCTC-TCTTT-CAAGCCAC-------TAA-----TTG-A-----CA------------------AA--TG-GGGT--TGTC-TGA--T-ATA--TC-AA-TCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-C-CC------CCAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATATATTT-CCATCAG-AG-GA--T---GCAG-GTTTGCA--TTTTTTTT---TTTTTTTTTTTTTCGGAAAAA---AA----AA--AGAGGG-CA--TTATT-TGC-TTTCCTT-------------TTTTT-TTTT-CATTT-AATTTTTTTATGCTGAAAAAAATATTTTAAAA-AC---TT---A--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGAA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGTA--AA-T---ACATGTGTCTAGA--------------A-----------G-TAA-TC-TCA----------AAAAC--GCGAAA-TCTG-G-TTTCCAT-CGG-G--GGGCATTGCATCCC---------------CC-----AC--------CA-GG-GCGTTG-CCCTGGA-CTCGTTGG--AG-CCGTTGG----GCAACCG---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATG
gi|10 : TTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-TG----TTGTGT---AT-T---ACATGTTCATGGAGAATTTGTTCTCCAA-----------G-TGA-TCGTCC----------AAAAC--ACGACACTCTG-T-TTTCCGT-CTG-G--GGACTTTG--CCCC---------------CC-----A----------A-GG-AC---A-CC----A-TTC----G--GG-TC-TTGG----GCAGCCC----CAGAGTGGCCCCTCA------AC-----CTTA-ATCT------GGTGTAATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGtcagc
gi|11 : TA-------------TTTTT-CCGT-CATTT-AATTTGATTACTCTGAAAAAA-TATT----AA-ACATTTT---ATTACGAAAGAC-CTCTG-----C----A---AG-----------TGTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-TT----TTGCGT---AT-T---ACGTGTGCCTAGA--------------ATTTGTTCCCAAG-TGA-TC-TTA----------CAAAC--ACGAAA-TCTG-T-TTACCaatcgg
gi|14 : ttggtaTCATTAA-GGAGATTCGTGCAAACTT----TTGTGT---AT-T----TACTTGCCTAAA--------------A-----------GTTGA-TC-TCA----------AAAAC--ACGAAA-TCTGTT-TTTCCAT-CGA-GTTGGGCATTGCCATCC---------------CC-----AC--------CATTT-GCGTTG-CTTAGGA-CTCGCTGG--AG-CC-C--------------------------CTCA-------------------------------GGTGC-CTATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-Gtcccgga
gi|15 : aCTCACAAACAAC----A---T-----------------CCC-ACG---AC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACC-CCCGCACCTGCATCT------TTA----------------CTC-TCTTTACAAGCCTC---GGT-TAA-----TCA-A-----CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-T
gi|16 : aaattcatgcacaaaCTCACAAACAAC----A---T-----------------CCC-ACG---AC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACC-CCCGCACCTGCATCT------TTA----------------CTC-TCTTTACAAGCCTC---GGT-TAA-----TCA-A-----CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-Tttcaaaccagt
gi|17 : aaattcatgcacaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCC-CC------CCAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATGGCTTT-CCACCAG-AG-GA--GCTAGCAG-GTTTGCA--TTTTTTTTTTCTTT------------AAAAAA---AA----AA--AAA--G-CA--TAAGT-TGC-TTttcaaaccagt
gi|18 : -TCC----------AAAAC--AAGAAA-CCTG-TCTTTCCGTACAGTG--GAGCTCCCCACCCCCCCCCCACCCCAACTCC-----AC--------CA-AGCGCGCTGCCCCTGGACCCCACTGAGCGG-CC-TTTGCTTAGCGAGCT---CCAGA----CCCCTC-------AC-----
gi|2 : aaTCC-ATTTTA----GAC-TATAT--------GT---AA-----C--TCTTA--TTAATTCCATCTCTCTGACTCAAA---CTTTGATCAT----TCAAAA---ATTAAATAATCA----------------AACAAACTCAACCCTTG-AAACAACTCCCACCTT-----------------CCC-A-G---ACA-A-C--T--CCTG-GGAAAACAGCTC-----AAGCACC-GC-ACGCC---ATTCTCTGCCTT----TG-TA--T-GTTTCTC-TCTTT-CAAGCAAC---A-T-TGACATATTCA-------CA-----T------T----GAA--TAATGGT--TGTAATGA--T-ATATATT-AAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-C-CC------ACAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAAATGCTTT---CA--AG-AGAAA--G---GC-G-GTTTGCATTTTTTTTTT---TCT------------GGAAAA---AA----A-----A--G-CA---TAAT-TGC-TTGCATA-------------TTt
gi|2 : TCTG-----GTTAAA----GAT-ATTTGA-TTGTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATTT----GTGTGT---AT-A---ACATGTGCCTAGA--------------A-----------G-TGG-TC-TCA----------AAA----ACGAAA-TTTGTT-TTTCCAT-CGG-G--GGG-GGGGCAT--------------------------------------TG-GTGTTG-TCCTGGA-CTCGCTGG--AG-CC--TAG----GCGA-CC---ACAGA----CTCATC-------GC-----TTTATAT-TCACGTGGGTCG-CTAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GT---gcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|22 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggtttgcatttttttttttctggaaaaaaaagcataattgcttgcatattgca-C-CC------TCCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATGGTTTT-CCGCCAC-AG-GA--G---GCGG-GCATGCA--TTTTTCTT---TCT------------GGAAAA---a
gi|24 : ccaccTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gg
gi|3 : AA--TAAAAGC--TGTC-GGA--A-CTA-ATTTAA-TCAAAA-CT-------TTTTT--TGTGAATTACGGCA-TCAATATAAAAATGC-----AAAGTTT-CTTT------TC--A--TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATT-TTGCCAT-AG-GA--G---GCAGCG--TGC----CTTTTTT---TCT------------GGAAAA---AATACCGA--AGT--GTCATTTTCGTATAA-TTTCCAA-------------CTTTG-TTT---ATTT-A--TTGATTACGTTG--AAGAATATT---AAA-AC---TCTTAAT-ATGAAAGACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--------TTGTGTTTAAT-T---ACGTGTGCCTAGATATTGTTTCCT---A-----------G-TGA-TC-GAC----------AAAACGTACGAAA-TCT-------------------GGGCTTTGC-CTCC---------------CC-----A---------------------------------GCTGG--AG-GC-TTTG----GCGGTCCTCGACCGT----CTCGTCTTAATGGGCCTACGCTTA-AT-T------GGTGCTTTCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--C
gi|4 : ctAACGCCTCCACTTTTA----AGACTATAT--------GTG--AA-----C--TCTTAACTTAATTC-ATCTCTCTG-CTCGAAAAACTTTGATCAT----TCAAAACAGATTAGAAAATGAATTAACGAACTTGCA-AACAACCCTAACCCCTACAAACAACTCC-A---CATCACGTCTACACCTTACCCGACGGTGACG-AACACT--CCTGCGGAAAACAGCTC-----AAG-ACCTCC-GCACCTGCATTTCCT--CTTATCTTG-TATCT-TTTCCTCTTCTTT-CAAGCCACTAAG-TCTGA-----GCA-ATAACTCA-----T------T----GAA--TAATGGT--TGTC-TGA--TAATA-AT-------AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-C-CCCCTCCTCCCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATGGCTTTCCCACCAGCAG-GACTA---GC-G-GTTGGCA--TTTTTTTT---TCT------------AAAAAA---AA----AA--GG------A--TAAGT-TGC-TT
gi|4 : tataGAAAT--CATTAA-GGAGATTCGTGCAAACTT----TTggaaatcattaaggagattcgtgcaaactttt
gi|5 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttgAACACTTTC-CCTTTAAATAGGCCTATAT--------AC---AA-----C--TCTTACTTTAATTC-ATCTCTNT--C----AACACTTT--CCCT----TTAAA
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcAACACTTTC-CCTTTAAATAGGCCTATATAAATGTATGTG--AATTTAAC--TCTTACTTTAATTC-ATCTCACCAACTCAGA-CACTTTGACCATGCATTCAAAACA-AACAGAAA-TCA-TTCAC-AACTT--------------------GCCAACAACTC------------------------------------G-A-CACTGACCTG-GGAGAACAGCTCC----A-GCACC-CC-ACATCTGCATCTCCT--CTTATC-TG-TA----TTTTCTC-TCTtaggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtattttctctctaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcT-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-TT----TTGTGA---AT-TT--ACATGTGCCTAGA--------------ATTTATTCCCAAG-TGA-TC-TCA----------AAAAC--ATGAAA-TCaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|6 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgta-TAA-----TTATG-----CA-----T-----------AAA--TAACGGC--TGTC-TGAA-T-ATA-ATT-AT-CCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA-----------------CCAAC--TGTTT----GTCAA-------------------TTTTT-TTAA-TGC--TT-CCACCAT-AG--A--G---GCAG-GTTCGG-------TTTT---TCT------------GAAAAA---AA----AT--AGTTTG-TT--TTTGT-TGTGTTTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCATAT-AATTTAATTAAACTGACAAAAATATTAT----------------T-AAGAAAAAC-CTCTG-----GTAAAA---ACAA-AGTGGC-TTTTACTTTATTTATATTAAT-TTTT-TC--CCTCT--AAACAATATTT-ATGAA-AGAAACCCA---AAATTT----TGGTAT---ATATACAACATGTGCCTAGA--------------A-----------T-TGGTTC-CCAAATTATTTTCAAAAC--AAGAAA-TCTA-C-TCTCCGT-TGG-A--CCCCCCCCCCCCCC---------------CCCCCAAACAACAACAACA-AG-GCGCTG-CCTTGGA-CCCGCTG
gi|7 : AACATTTTC-CTTTTA----GGCCTATAT--------GTGTGAA-----T--TCTTACTTCAATTC-ATCTTTCTGAATC-GCACACTTTGACCAT----TCAAAACA-ATCAG-AAATCA-TGCAC-ACCTC-----ACAAT-----------TAAGCAACTCC----------------------------CG----CG-A-CACT--CTGG-GGAAAACAGCTTTATAAAAGCACC-------CTTGTCCCTCCT--CTTATC-TG-CA--TCTTTTCTC-TCTTT-CAAGCCTC---T-TATAC-----ACA-A-----TA-----TTTCACGT----GAATTTAGTACTAGTATC-TGATGT-ATA-A-T-AG-TTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCt
gi|8 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAAAATT--CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT----CT------------AAAAAACCCAT----AATTATA--T-TAAGTTAAT-TGC-TTGCATA-------------TTTTT-TCGC-TATTTTAA---GATCATGCTGAAAAAAATATTTTAAAACAC---TT---A--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGT---GT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCAT-C-G-G--GGACATTGCATCCC---------------CC-----AC--------CA-TT-GCGTTG-CCCTGGA-CTCGCTGG--AGCCC-TCAG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-G------GGTGC-CTATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gac
gi|9 : AACACATTC-TCTTGA----GACCTATAT--------GTG--AA-----CACTCTTACTTTAATGC-ATCT------------ACACTTTGACCAT----TCAGAACA-A-TAAAAAATCA-TTCTC-AACTCTCATAACA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT
Alignments
lowQualScore : 2222 22222222 111 11111111 111111111 1111 4444 222222 888888888888888888888888888888888888888888 22222 1111 4444444444444 1 99999999999999999999999999999999999999999999 11 11111 2222222 11 11 111111 22222222222222 111111 111 222222222222 4444444444444444444 3333333333333 111 55555555555555555555 11111 11111111 1111 1111111 111 1111111 111 111 88888888888888888888888888 1111111111 111 55555555555555555555555555555555555555 111111111 1111 1111 33333333333333333333333333333 1 222 1
lowQualScore : 0 0 5 4444 00000000 222 44444444 0 0 5 555555555 1 2222 6 3 6 6 0000 000000 22 999999999999999999999999999999999999999999 0 77 8 5 2 55555 8888 99999 1111111111111 5 3 1 55555555555555555555555555555555555555555555 66 1 66 5 11 5 55555 5 6 1111111 55 55 1 1 1 444 333 5 5 666666 4 66 0 5 1 0 77777777777777 5 0 66 88 5 5 000000 5 5 000 888 555555555555 888 3333333333333333333 5 5 0 1 6666666666666 8 222 8 66 1 11 0 44444444444444444444 1 8 66666 22222222 6 5555 6666666 5 5 66 3 6 0 1 8 888 0000000 222 4 222 00000000000000000000000000 4 4 4 7777777777 55 4 111 1 5 4 7777 1 3 6 0 66666666666666666666666666666666666666 0 5 33 5 77 5 444444444 6 4444 2222 33333333333333333333333333333 3 1 5 3 5 77 5 5 77 6 333 5
lowQualScore : . . . .... ........ ... ........ . . . ......... . .... . . . . .... ...... .. .......................................... . .. . . . ..... .... ..... ............. . . . ............................................ .. . .. . .. . ..... . . ....... .. .. . . . ... ... . . ...... . .. . . . . .............. . . .. .. . . ...... . . ... ... ............ ... ................... . . . . ............. . ... . .. . .. . .................... . . ..... ........ . .... ....... . . .. . . . . . ... ....... ... . ... .......................... . . . .......... .. . ... . . . .... . . . . ...................................... . . .. . .. . ......... . .... .... ............................. . . . . . .. . . .. . ... .
lowQualScore : 7 3 7 3333 77777777 111 44444444 7 1 7 111111111 4 1111 7 5 7 7 5555 666666 11 444444444444444444444444444444444444444444 7 99 4 7 7 99999 6666 44444 0000000000000 7 3 0 77777777777777777777777777777777777777777777 99 0 99 0 99 0 55555 0 7 7777777 88 88 4 7 0 999 777 7 7 444444 9 99 4 0 0 1 88888888888888 0 4 99 22 0 0 888888 1 0 111 888 666666666666 888 4444444444444444444 7 7 6 0 7777777777777 0 444 0 44 4 44 8 88888888888888888888 0 0 77777 88888888 7 2222 2222222 0 0 99 2 4 1 6 0 111 8888888 222 4 222 44444444444444444444444444 4 4 0 5555555555 55 0 333 1 0 5 0000 0 1 1 2 22222222222222222222222222222222222222 8 0 66 0 99 7 777777777 6 9999 1111 66666666666666666666666666666 3 7 7 0 7 99 7 7 99 7 333 0
consensus : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-ACG---ACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCACC-CC-GCACCTGCATCTCCT--CTTATC-TG-TA--T-TTTTCTC-TCTTT-CAAGCCNC---G-T-TAA-----TCA-A-----CA-----T------C----GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTTTAAAA-AC---TT---AT-ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( family-1811 ) : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-ACG---ACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCACC-CC-GCACCTGCATCTCCT--CTTATC-TG-TA--T-TTTTCTC-TCTTT-CAAGCCNC---G-T-TAA-----TCA-A-----CA-----T------C----GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTTTAAAA-AC---TT---AT-ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
gi|1 : AACGCCTCC-CCTTTA----GACCTATAT--------GTG--AA-----C--TCTTACTT-AATCC-ATCTCTCTGACTCAGAAC-CTTTGATCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-GACTCGCA-AACAACCCCCACCCTCGCAAACAACTCCCACCTT-----------------CCC-ACG---ACGTA-CACT--CCTG-GGAAAACCGCTC-----AAGCACC-C--GCACCTGCATCTCCT--CTTATC-TGGTG--TCTTTTCTC-TCTTT-CAAGCCAC-------TAA-----TTG-A-----CA------------------AA--TG-GGGT--TGTC-TGA--T-ATA--TC-AA-TCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-C-CC------CCAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATATATTT-CCATCAG-AG-GA--T---GCAG-GTTTGCA--TTTTTTTT---TTTTTTTTTTTTTCGGAAAAA---AA----AA--AGAGGG-CA--TTATT-TGC-TTTCCTT-------------TTTTT-TTTT-CATTT-AATTTTTTTATGCTGAAAAAAATATTTTAAAA-AC---TT---A--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGAA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGTA--AA-T---ACATGTGTCTAGA--------------A-----------G-TAA-TC-TCA----------AAAAC--GCGAAA-TCTG-G-TTTCCAT-CGG-G--GGGCATTGCATCCC---------------CC-----AC--------CA-GG-GCGTTG-CCCTGGA-CTCGTTGG--AG-CCGTTGG----GCAACCG---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATG
gi|10 : TTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-TG----TTGTGT---AT-T---ACATGTTCATGGAGAATTTGTTCTCCAA-----------G-TGA-TCGTCC----------AAAAC--ACGACACTCTG-T-TTTCCGT-CTG-G--GGACTTTG--CCCC---------------CC-----A----------A-GG-AC---A-CC----A-TTC----G--GG-TC-TTGG----GCAGCCC----CAGAGTGGCCCCTCA------AC-----CTTA-ATCT------GGTGTAATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGtcagc
gi|11 : TA-------------TTTTT-CCGT-CATTT-AATTTGATTACTCTGAAAAAA-TATT----AA-ACATTTT---ATTACGAAAGAC-CTCTG-----C----A---AG-----------TGTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-TT----TTGCGT---AT-T---ACGTGTGCCTAGA--------------ATTTGTTCCCAAG-TGA-TC-TTA----------CAAAC--ACGAAA-TCTG-T-TTACCaatcgg
gi|14 : ttggtaTCATTAA-GGAGATTCGTGCAAACTT----TTGTGT---AT-T----TACTTGCCTAAA--------------A-----------GTTGA-TC-TCA----------AAAAC--ACGAAA-TCTGTT-TTTCCAT-CGA-GTTGGGCATTGCCATCC---------------CC-----AC--------CATTT-GCGTTG-CTTAGGA-CTCGCTGG--AG-CC-C--------------------------CTCA-------------------------------GGTGC-CTATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-Gtcccgga
gi|15 : aCTCACAAACAAC----A---T-----------------CCC-ACG---AC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACC-CCCGCACCTGCATCT------TTA----------------CTC-TCTTTACAAGCCTC---GGT-TAA-----TCA-A-----CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-T
gi|16 : aaattcatgcacaaaCTCACAAACAAC----A---T-----------------CCC-ACG---AC-----AGT--CC-G-GGAAACAGGCTCC----AAGCACC-CCCGCACCTGCATCT------TTA----------------CTC-TCTTTACAAGCCTC---GGT-TAA-----TCA-A-----CAATAGTT------CAGGTGAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-Tttcaaaccagt
gi|17 : aaattcatgcacaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCC-CC------CCAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATGGCTTT-CCACCAG-AG-GA--GCTAGCAG-GTTTGCA--TTTTTTTTTTCTTT------------AAAAAA---AA----AA--AAA--G-CA--TAAGT-TGC-TTttcaaaccagt
gi|18 : -TCC----------AAAAC--AAGAAA-CCTG-TCTTTCCGTACAGTG--GAGCTCCCCACCCCCCCCCCACCCCAACTCC-----AC--------CA-AGCGCGCTGCCCCTGGACCCCACTGAGCGG-CC-TTTGCTTAGCGAGCT---CCAGA----CCCCTC-------AC-----
gi|2 : aaTCC-ATTTTA----GAC-TATAT--------GT---AA-----C--TCTTA--TTAATTCCATCTCTCTGACTCAAA---CTTTGATCAT----TCAAAA---ATTAAATAATCA----------------AACAAACTCAACCCTTG-AAACAACTCCCACCTT-----------------CCC-A-G---ACA-A-C--T--CCTG-GGAAAACAGCTC-----AAGCACC-GC-ACGCC---ATTCTCTGCCTT----TG-TA--T-GTTTCTC-TCTTT-CAAGCAAC---A-T-TGACATATTCA-------CA-----T------T----GAA--TAATGGT--TGTAATGA--T-ATATATT-AAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-C-CC------ACAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAAATGCTTT---CA--AG-AGAAA--G---GC-G-GTTTGCATTTTTTTTTT---TCT------------GGAAAA---AA----A-----A--G-CA---TAAT-TGC-TTGCATA-------------TTt
gi|2 : TCTG-----GTTAAA----GAT-ATTTGA-TTGTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATTT----GTGTGT---AT-A---ACATGTGCCTAGA--------------A-----------G-TGG-TC-TCA----------AAA----ACGAAA-TTTGTT-TTTCCAT-CGG-G--GGG-GGGGCAT--------------------------------------TG-GTGTTG-TCCTGGA-CTCGCTGG--AG-CC--TAG----GCGA-CC---ACAGA----CTCATC-------GC-----TTTATAT-TCACGTGGGTCG-CTAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GT---gcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|22 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggtttgcatttttttttttctggaaaaaaaagcataattgcttgcatattgca-C-CC------TCCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATGGTTTT-CCGCCAC-AG-GA--G---GCGG-GCATGCA--TTTTTCTT---TCT------------GGAAAA---a
gi|24 : ccaccTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gg
gi|3 : AA--TAAAAGC--TGTC-GGA--A-CTA-ATTTAA-TCAAAA-CT-------TTTTT--TGTGAATTACGGCA-TCAATATAAAAATGC-----AAAGTTT-CTTT------TC--A--TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATT-TTGCCAT-AG-GA--G---GCAGCG--TGC----CTTTTTT---TCT------------GGAAAA---AATACCGA--AGT--GTCATTTTCGTATAA-TTTCCAA-------------CTTTG-TTT---ATTT-A--TTGATTACGTTG--AAGAATATT---AAA-AC---TCTTAAT-ATGAAAGACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--------TTGTGTTTAAT-T---ACGTGTGCCTAGATATTGTTTCCT---A-----------G-TGA-TC-GAC----------AAAACGTACGAAA-TCT-------------------GGGCTTTGC-CTCC---------------CC-----A---------------------------------GCTGG--AG-GC-TTTG----GCGGTCCTCGACCGT----CTCGTCTTAATGGGCCTACGCTTA-AT-T------GGTGCTTTCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--C
gi|4 : ctAACGCCTCCACTTTTA----AGACTATAT--------GTG--AA-----C--TCTTAACTTAATTC-ATCTCTCTG-CTCGAAAAACTTTGATCAT----TCAAAACAGATTAGAAAATGAATTAACGAACTTGCA-AACAACCCTAACCCCTACAAACAACTCC-A---CATCACGTCTACACCTTACCCGACGGTGACG-AACACT--CCTGCGGAAAACAGCTC-----AAG-ACCTCC-GCACCTGCATTTCCT--CTTATCTTG-TATCT-TTTCCTCTTCTTT-CAAGCCACTAAG-TCTGA-----GCA-ATAACTCA-----T------T----GAA--TAATGGT--TGTC-TGA--TAATA-AT-------AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-C-CCCCTCCTCCCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATGGCTTTCCCACCAGCAG-GACTA---GC-G-GTTGGCA--TTTTTTTT---TCT------------AAAAAA---AA----AA--GG------A--TAAGT-TGC-TT
gi|4 : tataGAAAT--CATTAA-GGAGATTCGTGCAAACTT----TTggaaatcattaaggagattcgtgcaaactttt
gi|5 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttgAACACTTTC-CCTTTAAATAGGCCTATAT--------AC---AA-----C--TCTTACTTTAATTC-ATCTCTNT--C----AACACTTT--CCCT----TTAAA
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcAACACTTTC-CCTTTAAATAGGCCTATATAAATGTATGTG--AATTTAAC--TCTTACTTTAATTC-ATCTCACCAACTCAGA-CACTTTGACCATGCATTCAAAACA-AACAGAAA-TCA-TTCAC-AACTT--------------------GCCAACAACTC------------------------------------G-A-CACTGACCTG-GGAGAACAGCTCC----A-GCACC-CC-ACATCTGCATCTCCT--CTTATC-TG-TA----TTTTCTC-TCTtaggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtattttctctctaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcT-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-TT----TTGTGA---AT-TT--ACATGTGCCTAGA--------------ATTTATTCCCAAG-TGA-TC-TCA----------AAAAC--ATGAAA-TCaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|6 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgta-TAA-----TTATG-----CA-----T-----------AAA--TAACGGC--TGTC-TGAA-T-ATA-ATT-AT-CCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA-----------------CCAAC--TGTTT----GTCAA-------------------TTTTT-TTAA-TGC--TT-CCACCAT-AG--A--G---GCAG-GTTCGG-------TTTT---TCT------------GAAAAA---AA----AT--AGTTTG-TT--TTTGT-TGTGTTTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCATAT-AATTTAATTAAACTGACAAAAATATTAT----------------T-AAGAAAAAC-CTCTG-----GTAAAA---ACAA-AGTGGC-TTTTACTTTATTTATATTAAT-TTTT-TC--CCTCT--AAACAATATTT-ATGAA-AGAAACCCA---AAATTT----TGGTAT---ATATACAACATGTGCCTAGA--------------A-----------T-TGGTTC-CCAAATTATTTTCAAAAC--AAGAAA-TCTA-C-TCTCCGT-TGG-A--CCCCCCCCCCCCCC---------------CCCCCAAACAACAACAACA-AG-GCGCTG-CCTTGGA-CCCGCTG
gi|7 : AACATTTTC-CTTTTA----GGCCTATAT--------GTGTGAA-----T--TCTTACTTCAATTC-ATCTTTCTGAATC-GCACACTTTGACCAT----TCAAAACA-ATCAG-AAATCA-TGCAC-ACCTC-----ACAAT-----------TAAGCAACTCC----------------------------CG----CG-A-CACT--CTGG-GGAAAACAGCTTTATAAAAGCACC-------CTTGTCCCTCCT--CTTATC-TG-CA--TCTTTTCTC-TCTTT-CAAGCCTC---T-TATAC-----ACA-A-----TA-----TTTCACGT----GAATTTAGTACTAGTATC-TGATGT-ATA-A-T-AG-TTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCt
gi|8 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAAAATT--CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT----CT------------AAAAAACCCAT----AATTATA--T-TAAGTTAAT-TGC-TTGCATA-------------TTTTT-TCGC-TATTTTAA---GATCATGCTGAAAAAAATATTTTAAAACAC---TT---A--AGGAAAGGC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGT---GT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCAT-C-G-G--GGACATTGCATCCC---------------CC-----AC--------CA-TT-GCGTTG-CCCTGGA-CTCGCTGG--AGCCC-TCAG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-G------GGTGC-CTATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gac
gi|9 : AACACATTC-TCTTGA----GACCTATAT--------GTG--AA-----CACTCTTACTTTAATGC-ATCT------------ACACTTTGACCAT----TCAGAACA-A-TAAAAAATCA-TTCTC-AACTCTCATAACA
blockSeqs : A AATA AAATGTAT GTG TTTAAC C GACTCAAA A GCAT G T A G TCAT ACTCAA CA TCCACATCACGTCTACACCTTACCCGACGGTGACGAA GA T C G TATAA CCC TCTGC TCTTGTATCTT T A T GGTTAATCAACAATAGTTCAGGT TT A AG A TG A TATT A C ATTTACC AC TG T T A CCA AAA C T CCTCCT A GC T A GGTTTTTT A GC TC C A GCTA A C ATT TTC . CCC TACCGAAGTGTCATT A G A GGTTTGTTGGTTT G TTG T AT C AA AAACATTTTATT C A GATCT AACAAATG T TTTA ATATTAA A G AT T T A A TGC CTGAACA TTA A ACA GAATTTGTTCTCCAA T T G AATTATTTTC GT C TT G A T GTT T T C CCCCCCACCCCAACTCCACCAAGC C TA C GC C TTTGCTTA C TCGA GTGG TTAATGGGCCTACGCTTAATT A T C T A AT T G AT C . G
blockSeqs : . AATA . G CAC . GCTCGAAA A . . T . . GCA CCCTAA CA TCCCACCTTCCCAGACAA . T . G C CCC CCT TCTGCATCT . A T GGTTAATCAACAATAGTTCAGGT . A . . A . ATTT . . . C C C A A CCA AAA . . . A . . T ATTGTTG . CT T . . CTA G . A . . . AATTATATTAAG . . C . . GT . AT C AC AAAACTCTTAAT T . . ACAA . A . . . . T A C A TGC CTT . . T ATTTGTTCCCAA . . . . . . TC A . G TG A T A CCCCCAAACAACAACAACAAG . CT . . . TTGG G C . GCTTTATATTCACGTG T A . C . . . . . . .
blockSeqs : . . . G C . AACTCAGA A . . A . . . T TG ATCCCACGAC . T . A C TCC CCT TCTGTAT . . A TAAGTCTGAGCAATAACTCATT . T . . . . ATT . . . . . C T T CC AAG . . . C . . T GTGGAT . GT T . . G A . A . . . ATAGTTTGTT . . T . . GC . A A AA TTAAAACACTTA A . . AGAT . T . . . . T T C . TGC TTT . . . TATTGTTTCCTA . . . . . . TT G . A G T C A CCACCATTT . CT . . . TTTG T A . AACCTTAATCT . T . C . . . . . .
blockSeqs : . . . G C . GAATCGCA A . . T . . . . TA ATCCCACGAC . G . A C GC CCT TGTATG . . A TTATACACAATATTTCACGT . A . . . . AT . . . . . T T A A CCC . . . C . . T GTAGG . CT T . . G A . A . . . AAAAAGCA . . A . . T . . T . ATT G . . GAT . A . . . . T G C . TGC CTT . . . ATTTATTCCCAA . . . . . . T A . G G G G C CCACCATT . TT . . . TCAG C A . GCCTTAATG . T . C . . . . . .
blockSeqs : . . . . C . CAA A . . . . . . G TCCCGCGA . . . A . CC . . . . T ATTGACATATTCACATT . T . . . . AT . . . . . T T T . . . . . A . . A TTTT . GC T . . G A . A . . . AAGCA . . . . AG . . . . . . T T C . T TTT . . . A . . . . . . T G . G A T T A CCAAGG . CT . . . TAG . . . . . T . . . . . . . .
blockSeqs : . . . . T . A . . . TCGA . . . A . . . . . . C . . . . AT . T . T . . . . . . G GTGA . AA . . . G . . . . . . AAGGA . . . . . . . . T . . TG . . . A . . . . . . C A . . G C C . CCA . . . . . C . . . . . . . . . . .
blockSeqs : . T . . . . AT . . . A . . C . . . G . . . . . . . . . . . . C . . TT . . . A . . . . . . T . . . . A T . TG . . .
blockSeqs : . . . TT . . . A . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : GACTCAAA* **** ATCCCACGAC******************************** C**** CCC* TCTGTATCT**** TTAATCGACAATANTTCACGT*********************** ************ AAGCAT************* AAAAATCTTATT******** *** TCG******
originalCons : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAGAACACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC-CA-AACAACCCCAACCCTCGCAAACAACTCC-A---T-----------------CCC-ACG---ACG-A-CACT--CCTG-GGAAAACGGCTCC----AAGCACC-CC-GCACCTGCATCTCCT--CTTATC-TG-TA--T-TTTTCTC-TCTTT-CAAGCCNC---G-T-TAA-----TCA-A-----CA-----T------C----GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AA----AA--AGA--G-CA--TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTTTAAAA-AC---TT---AT-ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CC-TTNG----GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
finalCons : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTCAAA-CACTTTGACCAT----TCAAAACA-ATTAGAAAATCA-TTCAC-AACTC----AACAACCCCAACCCTCGCAAACAACATCCCACGAC--------------------------------CACT--CCTG-GGAAAACGGCTCC----AAGCACCCCC-GCACCTGCATCTCCT--CTTATCTGTATCT----TTTCTC-TCTTT-CAAGCCNCTTAATCGACAATANTTCACGT-----------------------GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-C-CC------CCAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTT---TCT------------GAAAAA---AAAAGCAT-------------TTAGT-TGC-TTTCNTA-------------TTTTT-TTTT-CATTT-AATTTGATTACGCTGAAAAAAATATTAAAAATCTTATT--------ANGAAAGAC-CTCTG-----GTTAAA---AGAT-ATTGGA-TTGTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------CA-NG-GCGTTG-CCCTGGA-CTCGCTGG--AG-CCTCG------GCGACCC---ACAGA----CTCATC-------GC-----CTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT
Alignments
lowQualScore : 2222 22222222 111 11111111 11111111 1111 33333333333333333 888888888888888888888888888888888888888888888888888 222222 222222222222222 1 22222 11 11111 2222222 11 11 22222222 22222222222222 111111 1111 333333333333 55555555555555555555555555 3333333333333 111 22 111111111 11111 111111 1111 1111111 111 1111111 111 111 88888888888888888888888888 1111111111 111 5555555555555555555555555555555555555555 333333333333333333333333 1 22222222 1 222 1
lowQualScore : 0 0 5 4444 00000000 222 44444444 0 0 5 55555555 5 2222 6 3 6 99999999999999999 0 111 999999999999999999999999999999999999999999999999999 77 8 5 2 333333 3 5 5 99999 888888888888888 5 3 1 88888 6 6 9 77 5 66 1 66 5 11 5 55555 5 6 1111111 55 55 1 1 444 333 5 00000000 66 0 5 1 0 77777777777777 5 0 66 88 5 5 000000 5 5 0 8888 888888888888 888 88888888888888888888888888 5 5 5 0 1 6666666666666 8 222 8 66 1 66 22 0 888888888 1 8 66666 666666 6 5555 6666666 5 5 66 3 6 0 1 8 888 0000000 222 4 222 00000000000000000000000000 4 4 4 7777777777 55 4 111 1 5 4 7777 1 3 6 0 0000000000000000000000000000000000000000 5 00 55 5 77 5 888888888888888888888888 2 0 6 44444444 3 1 5 3 5 77 5 5 77 6 333 5
lowQualScore : . . . .... ........ ... ........ . . . ........ . .... . . . ................. . ... ................................................... .. . . . ...... . . . ..... ............... . . . ..... . . . .. . .. . .. . .. . ..... . . ....... .. .. . . ... ... . ........ .. . . . . .............. . . .. .. . . ...... . . . .... ............ ... .......................... . . . . . ............. . ... . .. . .. .. . ......... . . ..... ...... . .... ....... . . .. . . . . . ... ....... ... . ... .......................... . . . .......... .. . ... . . . .... . . . . ........................................ . .. .. . .. . ........................ . . . ........ . . . . . .. . . .. . ... .
lowQualScore : 7 3 7 3333 77777777 111 44444444 7 1 7 00000000 0 1111 7 5 7 88888888888888888 6 666 999999999999999999999999999999999999999999999999999 99 4 7 7 999999 0 7 0 44444 999999999999999 7 3 0 22222 7 7 8 00 7 99 0 99 0 99 0 55555 0 7 7777777 88 88 4 0 999 777 7 33333333 99 4 0 0 1 88888888888888 0 4 99 22 0 0 888888 1 0 4 2222 111111111111 888 11111111111111111111111111 7 7 7 6 0 7777777777777 0 444 0 44 4 44 00 8 888888888 0 0 77777 888888 7 2222 2222222 0 0 99 2 4 1 6 0 111 8888888 222 4 222 44444444444444444444444444 4 4 0 5555555555 55 0 333 1 0 5 0000 0 1 1 2 9999999999999999999999999999999999999999 0 55 44 7 99 7 444444444444444444444444 0 7 7 88888888 3 7 7 0 7 99 7 7 99 7 333 0
consensus : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTC-A-AACACTTTGAC----CATTCAAAACA-ATTAGAAAATCA-TTCAC-AACTC---AACAACCCCAACCCTCGCAAACAAC-----A---TC---------------CC-------AC-------GAC---CACT--CCTG-GGAAAACGGCTCCA----AGCACCCCCGCAC-CTGCATCTCCT--CTTATC-TG-TATCTTTT-CTC-TCTTT-CAAGCCNC--TTAATC-GA-CAATAGTTCACGT-GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-CCC------C-CAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTTTCT------------GAAAAA---AA-----A-A-----G---CAT------TT-AGT-TGC-TTTCNTA-------------TTTTT-TTTT-CA-TTTAATTTGATTACGCTGAAAAAAATATTTTAAAANTCTTATTANGAAAGAC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------C--A-NG-GCGTTG-CCCTGGA-CTCGCTGG-A--G-C--------C--TC--GGCGACCCACAGACTCATCGCCTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
Reference ( family-1811 ) : AACGCTTCC-CCTTTA----GGCCTATAT--------GTG--AA-----C--TCTTACTTTAATTC-ATCTCTCTGACTC-A-AACACTTTGAC----CATTCAAAACA-ATTAGAAAATCA-TTCAC-AACTC---AACAACCCCAACCCTCGCAAACAAC-----A---TC---------------CC-------AC-------GAC---CACT--CCTG-GGAAAACGGCTCCA----AGCACCCCCGCAC-CTGCATCTCCT--CTTATC-TG-TATCTTTT-CTC-TCTTT-CAAGCCNC--TTAATC-GA-CAATANTTCACGT-GAA--TAANGGT--TGTC-TGA--T-ATA-ATT-AA-TCGAAA-CA-------TTTTT--TG--AATTACGGCATTCAANATCAAAATGCCCAATAAAATTT-CCC------C-CAAA--TAATCAG-CNTTAAAAAC---G----T-T--TTTTTTT-TTAAATGNNTTT-CCACCAG-AG-GA--G---GCAG-GTTTGCA--TTTTTTTTTCT------------GAAAAA---AA-----A-A-----G---CAT------TT-AGT-TGC-TTTCNTA-------------TTTTT-TTTT-CA-TTTAATTTGATTACGCTGAAAAAAATA--TTAAAAATCTTATTANGAAAGAC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGT---AT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCGT-CGG-G--GGGCNTCGCACCCC---------------CC-----AC--------C--A-NG-GCGTTG-CCCTGGA-CTCGCTGG-A--G-C--------C--TC--GGCGACCCACAGACTCATCGCCTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GT---TAACTGATG
gi|1 : AACGCCTCC-CCTTTA----GACCTATAT--------GTG--AA-----C--TCTTACTT-AATCC-ATCTCTCTGACTC-AGAAC-CTTTGAT----CATTCAAAACA-ATTAGAAAATCA-TTCAC-GACTCGCAAACAACCCCCACCCTCGCAAACAACTCCC-ACCTTC---------------CC-------AC-------GACGTACACT--CCTG-GGAAAACCGCTC-A----AGCACCC--GCAC-CTGCATCTCCT--CTTATC-TGGTGTCTTTT-CTC-TCTTT-CAAGCCAC--T-AATT-GA-CAA--------AT-G-------GGGT--TGTC-TGA--T-ATA--TC-AA-TCGAAA-CA-------TTTTT--TG--AATTATGGCATTCAAAATCAAAATGCCTAATAAAATTT-CCC------C-CAAA--TAATCAG-CACTAAAAAC---G----T-T--TTTTTTT-TTAAATATATTT-CCATCAG-AG-GA--T---GCAG-GTTTGCA--TTTTTTTTTTTTTTTTTTTTTCGGAAAAA---AA-----A-AAGAGGG---CA-------TT-ATT-TGC-TTTCCTT-------------TTTTT-TTTT-CA-TTTAATTTTTTTATGCTGAAAAAAATATTTTAAAAA-CTTA--AGGAAAGGC-CTCTGG-----TTAAAAG---AT-ATTGAATT-GTAC---ATTT-------T-TTCT-CC--CTTCTTCTAACAAAATTTCATTAA-GGAGACCCATGCAAACTT----TTGTGTA--AA-T---ACATGTGTCTAGA--------------A-----------G-TAA-TC-TCA----------AAAAC--GCGAAA-TCTG-G-TTTCCAT-CGG-G--GGGCATTGCATCCC---------------CC-----AC--------C--A-GG-GCGTTG-CCCTGGA-CTCGTTGG-A--G-C--------CGTTG--GGCAACCGACAGACTCATCGCCTTA-AT-T------GGTGC-CTATACTTCCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-GTGAATAACT-ATG
gi|10 : TTT-------T-TTCT-TG--CT-CTTCTAACGAAATT--A--GA-GAAGATCAAT---AA-TG----TTGTGT---AT-T---ACATGTTCATGGAGAATTTGTTCTCCAA-----------G-TGA-TCGTCC----------AAAAC--ACGACACTCTG-T-TTTCCGT-CTG-G--GGACTTTG--CCCC---------------CC-----A------------A-GG-ACACCA-TTCGGGT-CTTG--GGCA--G-C--------C--CCAGAGTGGCCC-----CTCA--ACCTTA-ATCT------GGTGTAATATACTTCCTCAA-GATCCC-AGATATA-C-GCCA--CTCGT---TAACTGATGtcagc
gi|11 : TA-------------TTTTT-CCGT-CA-TTTAATTTGATTACTCTGAAAAAA-TA--TTAAACATTTTATTACGAAAGAC-CTCTGC---------AAG-------------T-GTAC----TTT-------T-CTTA-CC--CTTCTACTAAGGAAATTTAATTAAAGGAGATCCA----AA-TT----TTGCGT---AT-T---ACGTGTGCCTAGA--------------ATTTGTTCCCAAG-TGA-TC-TTA----------CAAAC--ACGAAA-TCTG-T-TTACCaatcgg
gi|14 : ttggtaTCATTAA-GGAGATTCGTGCAAACTT----TTGTGT---AT-T----TACTTGCCTAAA--------------A-----------GTTGA-TC-TCA----------AAAAC--ACGAAA-TCTGTT-TTTCCAT-CGA-GTTGGGCATTGCCATCC---------------CC-----AC--------C--ATTT-GCGTTG-CTTAGGA-CTCGCTGG-A--G-C--------C--C----------------CTCA-------------------GGTGC-CTATACT--CTCAA-G--CCTAAG--CTA-CGGCCA--CT-Gtcccgga
gi|15 : aCTCACAAACAAC-----A---TC---------------CC-------AC-------GAC----AGT--CC-G-GGAAACAGGCTCCA----AGCACCCCCGCAC-CTGCATCT------TTA---------------CTC-TCTTTACAAGCCTCGGTTAATC-AA-CAATAGTTCAGGT-GAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-T
gi|16 : aaattcatgcacaaaCTCACAAACAAC-----A---TC---------------CC-------AC-------GAC----AGT--CC-G-GGAAACAGGCTCCA----AGCACCCCCGCAC-CTGCATCT------TTA---------------CTC-TCTTTACAAGCCTCGGTTAATC-AA-CAATAGTTCAGGT-GAA--TAAAGGT--TGGA-TGA--T-ATG-A-T-AA-Tttcaaaccagt
gi|17 : aaattcatgcacaaaTTATGGCATTCAAAATCAATATGCCCAATAAAATTTCCCC------C-CAAA--TGATCAG-CATTAAAAAC---G----T-GGATTTTTTT-TAAAATGGCTTT-CCACCAG-AG-GA--GCTAGCAG-GTTTGCAT-TTTTTTTTTCTTTAAA-------AAAAAA---AA-----A-A-----G---CA-------TA-AGT-TGC-TTttcaaaccagt
gi|18 : -TCC----------AAAAC--AAGAAA-CCTG-TCTTTCCGTACAGTG--GAGCTCCCCACCCCCCCCCCACCCCAACTCC-----AC--------C--A-AGCGCGCTGCCCCTGGACCCCACT-G-A--G-CGGCCTTTGC--TT--AGCGAGCTCCAGACCCCTCAC
gi|2 : aaTCC-ATTTTA----GAC-TATAT--------GT---AA-----C--TCTTA--TTAATTCCATCTCTCTGACTC-A-AAC--TTTGAT----CATTCAAAA---ATTAAATAATCA---------------AACAAACTCAACCCTTG-AAACAAC---------TC---------------CC-------ACCTTCCCAGAC---AACT--CCTG-GGAAAACAGCTC-A----AGCACC---GCACGC--CATTCTCTGCCTT----TG-TATGTTT--CTC-TCTTT-CAAGCAAC-----ATT-GA-CA-TA-TTCACATTGAA--TAATGGT--TGTAATGA--T-ATATATT-AAATCGAAA-CA-------TTTCTC-TGC-AATTACGGGAATCCAAATCAAAATTCCCAATAAAATTT-CCC------A-CAAAGCTAATCAGTCTCTAAAAACATTG----T-T--GTTTTTT-TTAAATGCTTT---CA--AG-AGAAA--G---GC-G-GTTTGCATTTTTTTTTTTCT------------GGAAAA---AA-----A-A-----G---CA--------T-AAT-TGC-TTGCATA-------------TTt
gi|2 : TCTGG-----TTAAA-G---AT-ATTTGATT-GTAC---ATTT-------T-TTCT-CCATCTTCTTCTA-CGAAATTTCTTTAA-GGAGACTCATGCAAATTT----GTGTGT---AT-A---ACATGTGCCTAGA--------------A-----------G-TGG-TC-TCA----------AAA----ACGAAA-TTTGTT-TTTCCAT-CGG-G--GGG-GGGGCAT----------------------------------------TG-GTGTTG-TCCTGGA-CTCGCTGG-A--G-C--------C--TA--GGCGA-CCACAGACTCATCGCTTTATAT-TCACGTGGGTCG-CTAT--TATCTCAA-GG--CT-A---CTA-C-GCCAATCT-GT---gcatctggttaaagatatttgattgtacattttttctccatcttcttctacgaaatttctttaaggagactcatgcaaatttgtgtgtataacatgtgcctagaagtggtctcaaaaacgaaatttgtttttccatcggggggggggcattggtgttgtcctggactcgctggagcctaggcgaccacagactcatcgctttatattcacgtgggtcgctattatctcaaggctactacgccaatctgta
gi|22 : tccattttagactatatgtaactcttattaattccatctctctgactcaaactttgatcattcaaaaattaaataatcaaacaaactcaacccttgaaacaactcccaccttcccagacaactcctgggaaaacagctcaagcaccgcacgccattctctgcctttgtatgtttctctctttcaagcaacattgacatattcacattgaataatggttgtaatgatatatattaaatcgaaacatttctctgcaattacgggaatccaaatcaaaattcccaataaaatttcccacaaagctaatcagtctctaaaaacattgttgttttttttaaatgctttcaagagaaaggcggtttgcatttttttttttctggaaaaaaaagcataattgcttgcatattgca-CCC------T-CCAA--CACTCAG-CTGTAGAAAT---GGTTTT-T--TTTTTTTATTAAATGGTTTT-CCGCCAC-AG-GA--G---GCGG-GCATGCA--TTTTTCTTTCT------------GGAAAA---a
gi|24 : ccaccTACTTCTTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gg
gi|3 : AA--TAAAAGC--TGTC-GGA--A-CTA-ATTTAA-TCAAAA-CT-------TTTTT--TGTGAATTACGGCAT-CAATATAAAAATGC-----AAAGTTT-CTT------TTCA----TAATCTT-TTTT-----T---T----T-T--TTTTTTT-TTTATTGCTATT-TTGCCAT-AG-GA--G---GCAGCGT--GC----CTTTTTTTCT------------GGAAAA---AATACCGA-A-----GTGTCAT------TTTCGTATAA-TTTCCAA-------------CTTTG-TTT---A-TTTA--TTGATTACGTTGAAGAA--TA--TTAAAACTCTTAATATGAAAGACACTCTAGATCTGTTAAAAACAAATGATTGGATTTGGAC---TTTC-------TATTTTGCC--CTTCTGCTAACGGAAATTCTTAAA-GGAGACCCA---AA--------TTGTGTTTAAT-T---ACGTGTGCCTAGATATTGTTTCCT---A-----------G-TGA-TC-GAC----------AAAACGTACGAAA-TCT-------------------GGGCTTTGC-CTCC---------------CC-----AG--------CTGG-AG-GCTTTG-GC--GG---TC-CTCG-ACCG-T--------C--TC--GTC--TTAATGGGCCTA-CG-CTTA-AT-T------GGTGCTTTCCACTTCCTCAACGGCTCT-AG--CTATC-GACA--C
gi|4 : ctAACGCCTCCACTTTTA----AGACTATAT--------GTG--AA-----C--TCTTAACTTAATTC-ATCTCTCTG-CTCGA-AAAACTTTGAT----CATTCAAAACAGATTAGAAAATGAATTAACGAACTTGCAAACAACCCTAACCCCTACAAACAACTCCACA---TCACGTCTACACCTTACCCGACGGTGAC-------GAA---CACT--CCTGCGGAAAACAGCTC-A----AG-ACCTCCGCAC-CTGCATTTCCT--CTTATCTTG-TATCTTTTCCTCTTCTTT-CAAGCCAC--TAAGTCTGAGCAATAACTCAT-T-GAA--TAATGGT--TGTC-TGA--TAATA-AT-------AAAA-CA-------TTTTTACTG--AATTATGGCATTCATATTCAATATGCCC-ATACCCCCC-CCCCCTCCTC-CCAA--TAATCAG-CATTAAAAAC---G----TAG--GTTTTTT-TTAAATGGCTTTCCCACCAGCAG-GACTA---GC-G-GTTGGCA--TTTTTTTTTCT------------AAAAAA---AA-----A-A-----G---GA-------TA-AGT-TGC-TT
gi|4 : tataGAAAT--CATTAA-GGAGATTCGTGCAAACTT----TTggaaatcattaaggagattcgtgcaaactttt
gi|5 : tataaacgcctccacttttaagactatatgtgaactcttaacttaattcatctctctgctcgaaaaactttgatcattcaaaacagattagaaaatgaattaacgaacttgcaaacaaccctaacccctacaaacaactccacatcacgtctacaccttacccgacggtgacgaacactcctgcggaaaacagctcaagacctccgcacctgcatttcctcttatcttgtatcttttcctcttctttcaagccactaagtctgagcaataactcattgaataatggttgtctgataataataaaacatttttactgaattatggcattcatattcaatatgcccataccccccccccctcctcccaataatcagcattaaaaacgtaggttttttttaaatggctttcccaccagcaggactagcggttggcatttttttttctaaaaaaaaaaggataagttgcttgAACACTTTC-CCTTTAAATAGGCCTATAT--------AC---AA-----C--TCTTACTTTAATTC-ATCTCTNT--C-----AACACTTT--C----CCTTTAAA
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcAACACTTTC-CCTTTAAATAGGCCTATATAAATGTATGTG--AATTTAAC--TCTTACTTTAATTC-ATCTCACCAACTC-A-GACACTTTGACCATGCATTCAAAACA-AACAG-AAATCA-TTCAC-AA-------------------CTTGCCAACAAC---------T--------------------------C-------GA----CACTGACCTG-GGAGAACAGCTCC-----AGCA-CCCCACAT-CTGCATCTCCT--CTTATC-TG-TA--TTTT-CTC-TCTtaggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtattttctctctaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|5 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcT-------T-TTCT-CT--CT-----------AATTTTATTAAAGGAAATCCA----AA-TT----TTGTGA---AT-TT--ACATGTGCCTAGA--------------ATTTATTCCCAAG-TGA-TC-TCA----------AAAAC--ATGAAA-TCaattttattaaaggaaatccaaattttgtgaatttacatgtgcctagaatttattcccaagtgatctcaaaaacatgaaatc
gi|6 : aggggcgagctgccaactaaggcgcatgtctacacataatttttacaacaaattttaaaagttgaaatgttaaaacaccttgcagatttttgctgatcaaaagttgataaacccaaccgtggtacaatatgtcaacactttccctttaaataggcctatatacaactcttactttaattcatctctntcaacactttccctttaaataggcctatataaatgtatgtgaatttaactcttactttaattcatctcaccaactcagacactttgaccatgcattcaaaacaaacagaaatcattcacaacttgccaacaactcgacactgacctgggagaacagctccagcaccccacatctgcatctcctcttatctgtaCAT-AAA--TAACGGC--TGTC-TGAA-T-ATA-ATT-AT-CCCAAA-CC-------TTTTC--TG--AATTATGGAATTCAATATCAAA------AATA----------------C-CAAC--TGTTT----GTCAA-------------------TTTTT-TTAA-TGC--TT-CCACCAT-AG--A--G---GCAG-GTTCGG-------TTTTTCT------------GAAAAA---AA-----ATA-----G---TTTGTT---TT-TGT-TGTGTTTTTTAGGTTTGTTGGTTTTTTTTGTTTTGCA-TATAATTTAATTAAACTGACAAAAATA--TTA---------TTAAGAAAAAC-CTCTGG-----TAAAAAC---AA-AGTGGCTT-TTACTTTATTTATATTAAT-TTTT-TC--CCTCT--AAACAATATTT-ATGAA-AGAAACCCA---AAATTT----TGGTAT---ATATACAACATGTGCCTAGA--------------A-----------T-TGGTTC-CCAAATTATTTTCAAAAC--AAGAAA-TCTA-C-TCTCCGT-TGG-A--CCCCCCCCCCCCCC---------------CCCCCAAACAACAACAAC--A-AG-GCGCTG-CCTTGGA-CCCGCTG
gi|7 : taattatgAACATTTTC-CTTTTA----GGCCTATAT--------GTGTGAA-----T--TCTTACTTCAATTC-ATCTTTCTGAATC-G-CACACTTTGAC----CATTCAAAACA-ATCAGAAA-TCA-TGCAC-ACCTC---A-------CAATT-----AAGCAAC---------TC---------------CC-------GC-------GAC----ACT--CTGG-GGAAAACAGCTTTATAAAAGCACCCTTGT-C-C-----CTCCT--CTTATC-TG-CATCTTTT-CTC-TCTTT-CAAGCCTC--TT-ATA-CA-CAATATTTCACGT-GAATTTAGTACTAGTATC-TGATGT-ATA-A-T-AG-TTGAAACCAATTTACCTTTTC--TG--AATTATTGTATTCAATATCAAAATACCt
gi|8 : ggcacgtgcctacacataatttttacaccacaaatttaaaatggttaaaattcccatcatttaatgttaaaattccatattttcgcttattaaaggtcatttataaatctaaccatggtgcaatgtc--TAATAAG-CATTAAAAAC---G----T-G--AGTTTTT-TAAAAAAAATT--CCACCAG-AG-GA--G---GCAG-GTTTGCA---TTTTTTTTCT------------AAAAAACCCAT-----A-A-----T---TATATTAAGTT-AAT-TGC-TTGCATA-------------TTTTT-TCGC-TATTTTAA---GATCATGCTGAAAAAAATATTTTAAAACACTTA--AGGAAAGGC-CTCTGG-----TTAAAAG---AT-ATTGGATT-GTAC---ATTT-------T-TTCT-CC--ATTCTTCTAACGAAATTTCATTAA-GGAGACCCATGCAAACTGAACATTGTGT---GT-T---ACATGTGCCTAGA--------------A-----------G-TGA-TC-TCA----------AAAAC--ACGAAA-TCTG-T-TTTCCAT-C-G-G--GGACATTGCATCCC---------------CC-----AC--------C--A-TT-GCGTTG-CCCTGGA-CTCGCTGG-A--GCC--------C--TCA-GGCGACCCACAGACTCATCGCCTTA-AT-G------GGTGC-CTATACTTTCTCAA-GGCCCT-AG--CTA-C-GCCA--CT-Gac
gi|9 : AACACATTC-TCTTGA----GACCTATAT--------GTG--AA-----CACTCTTACTTTAATGC-ATCT-------------ACACTTTGAC----CATTCAGAACA-A-TAAAAAATCA-TTCTC-AACTC---
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|13 ): ACAGTGGCGTAGCTGGCATTTGGCAGAGCTTAAGGCCACGTGCCTACATATAGTCTTTACCAACAACAAAAATTTAATGAAATTAAAATTGTTCGTTTACCATAAGGTCAATGTAATAAAACCAAACCAAGGCGCAATGTTCATCTTAATTACTAACGTGCAACTTCCCTATTAGACGTATATGTGTAATTTCT
Unaligned ( gi|19 ): AAATATTTGGATATAATTGAGGTGACTACTAGTCAATGCTTCCTTAATTTTTGTCGCAACAAGGCGAGTAAATCTACTCTAGCTGACCCCCCCCCCCCCCCC
Unaligned ( gi|20 ): CGTAGTGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACAAATTTTCATATCAAAATTAAAATATTAAAAATAATATTTCTGGTTTATTTAAAGTCAT
Unaligned ( gi|21 ): CAGTGGCGTAGCTGCCATTAGGCACTTAAGGCACGTGCCTACACATAATTTTCATAACAAAAAATTAAAATACCATATTTTCGGTTATTAAAAGTCATT
Unaligned ( gi|23 ): TTGTGCGTAACAAGATATAAATCCAACCGTGGCGCATTGGTCAACAAT