lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 111111 7777777777777777777777777 1 1111111111111111111 2222 1111 22222 111111111111111111111111111111111111111111111111111111111111111111111111 1 333333333333333
lowQualScore : 0 5 6 55 222222 3 8 2222222222222222222222222 9 5 77 3 3 88888 3 3 88 6666 3 2 2 4444444444444444444 666 3333 33 33 3333 8 2 2 55 4 55555 2 2 2 4444 2 7777 33 66666 66 555 444444444444444444444444444444444444444444444444444444444444444444444444 44 7777777 2 6 33 444 444 77 8888 888888 3 4444 2 22 333 2 111111111111111 22 2 6 333 2 11 33 666666 2
lowQualScore : . . . .. ...... . . ......................... . . .. . . ..... . . .. .... . . . ................... ... .... .. .. .... . . . .. . ..... . . . .... . .... .. ..... .. ... ........................................................................ .. ....... . . .. ... ... .. .... ...... . .... . .. ... . ............... .. . . ... . .. .. ...... .
lowQualScore : 6 0 0 99 888888 1 6 2222222222222222222222222 2 0 11 3 3 33333 3 1 11 5555 1 9 9 9999999999999999999 999 1111 22 11 7777 4 1 0 00 4 66666 4 4 4 8888 4 5555 77 33333 88 000 111111111111111111111111111111111111111111111111111111111111111111111111 22 9999999 0 9 44 111 111 88 2222 666666 9 7777 1 99 999 9 777777777777777 88 0 4 999 2 11 22 444444 2
consensus : NCGGAGCGGAA-GTGGGTATCC-----ATGTAATAGTGAA-TTTCTTTGTGCTTTA-----------TA------------TCTTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-AAG-AG----TT-CAT-T-GCAA------TATT-----T---GTGCT--ATA-TATAAA--A--TATTT-N--AAATG-CAG-TGTGT--ATCT-TGT-----A-TG-ATCC-T-C--CTA-A---ATTTACGTCAA--AT-ANN-TG--T---ATCCCATTTCCATNANCAANTNNNNNNNNANNNNGCACGGNNNGNTGGNNGTNCNNNNNNNTCNCANGNTANTC-TCTT-TG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTGG--TCA------CACGCTGC----TAGGA--GATT---TGGTTCCG-CA---G-G----T--CGT-GAGTTCAAC---C-CCGGGCC-GGG------G-CGGAAGTGGGTATC
Reference ( gi|4 ) : GCGGAGAGGAA-GCGTTTATCC-----GTGTAATAGTGAA-TTCCTTTGTGCTTTA-----------T-------------TCTGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-AAA-AG----TT-CAT-T-GCAA------TATT-----T---GTGCT--ATA-CATAAA--A--TATTT-G--AAACG-CAG-TGTGT--ATCT-TGT-----A-TG-ATCC-T-C--CTA-A---ATTTACGTCAA--AT-ATA-TG--T---ATCCCATTTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTT-TG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTAG--TCA------CACACTGC----TAGGA--GATT---TGGATCCC-CA---C-A----T--CGT-GAGTTTAAC---C-CCGGGCC-GGG------G-CGGAAGTGGGTATC
gi|35 : CAGAGTGGAATGTGGT-ATCC-----ATGTAATAGTGAA-TTTCTTTGTGCTTTA-----------TA------------TCT
gi|57 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcCAGGGCGGAA-GTGGGTATCC-----ATGTAATATT----TTTCTTTGTGCTTTA-----------T-------------attttttttttacctag
gi|8 : caggtcgtgagttcaaccgcgttcGAAGCGGAA-GTGGGTATCC-----ATGTAATAGTGAA-TTTCTTTGTGCattatatatttc
gi|24 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctGGGGCGGAA-GTGGGTATCC-----ATGTAATTGAGAA-TTTCTTTCTGCTTTA-----------T-------------gggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|41 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttGAGAGGAA-GTGGGTATCCAAATTGTATAA-AGTGAA-TTTC-CTGTGTTTTA-----------T-------------attggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|5 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtatGGAA-GTGCGTATCT-----ATGCCATAGTGAA-TTTCTTTGTGCTTTA-----------TATTAAAATATT--TCTTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-ACT-AG----TT-CAT-T-GCAATGCTAGTATT-----T---GTGCT--TT---ATAAA--A--TATTT-C--AAATG-CAG-ACAGT--ATCA-TGT-----A-TG-ATCC-T----CTA-A-----TGAC--------------TG--T---ATCCCATTTCCA--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-AG---ACATGC--C--T----AG--AGTCGATC--GGT---C---TAGCG-AGCTGG--TCA------CGCGCTGC----TTGGA--GATT---TGGTTCTA-CA---G-G----A--CGC-GAGTTCAAC---C-CCAGGCA-AGG------G-CAGAAGTaagtaactacatg
gi|9 : ggcGGAA-GTGGGTATC------ATGTAATAGTGAA-TTTCTTAGCGTTTTA-----------TATTAATTAGTATTTCTTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A
gi|55 : atatgcattttaatagtactgtgtctatcgtgtatgatcctcctaaattcacgtcaaatagctgtatcccgtttctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttttttttacttacctagataaccgagtcacaggctgcaaggatatttggttctgcaggtcgtgagttcaacgtacaccgggacaggacGGAA-GTGGGTATCA-----GTGTAATAGTGAA-TTTCTTTGTGCTGTA-----------T-------------
gi|33 : TACCC-----ATATGATAGTGAA-TTTCTCTGTGCTTTA-----------T-------------attagataatatttcctcaataacggctatatatactttattt
gi|21 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcagggatagatgtgggTGTCC-----ATACAATAGTGAA-TTTCTCTGTGCTTTACATCAAAATATT-------------TCTTCAC-TG-AGGGCAGT---------TC-TCTATTT-CAA-G------------T-GCAA------TGTatacatgtgctttta
gi|12 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagAATAGCGAAATT--TGCGTGCTTTA-----------TATTACAAATTTT-TCTTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-AAG-ATAACTTT-CAT-T-GCGC------TATT-----TT--GTGCTTTATA--ATCAA--A--TATTT-T--AAA-G-TAG-AATGT--ATCT-GGT-----A-TG-AT------------------------CAA--AT-A----GC-T---ACC---TTTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGCccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|27 : AACAGTGAA-TTTCCTTGTGCTTTA-----------T-------------CCC-CAC-T
gi|19 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctgggacggaagtgggtattcgtggaattgtaaattagTGGTTAA-TTTTTTCCTGCTCTA-----------TATCATAT------TCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGATAA----CT-CAT-T--CAA------TAAT-----TCGCGTGCC--ACA----AAA--A--TATTT-C--AAATGCCAG-TAT-T--ATgtttgtgatata
gi|32 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtagaggcaaaagtgcattAC-TA-AGGGCAAT-T-A-----TG-TTAACT--ACG-AG----TT-AAT-T-GCAA------TA-----------GTGCT--TTA---TAAA--A--TATTTTG--AAATG-CAGGTGCAT--ATCT-TGT-----A-TG-ATCC-T-C--TTA-G---ATTTATGTCAA--AT-AAT-TG--T---ATCCC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-AAG-AA----TT-AAA-T-GCAA------TAT------------G-T--ATA-------------ATTT----------------TAT--ATTA-TAT-----A-TG-ATCC-T-C--TTA-G---ATTTACATCAA--ATGAT--TG--T---ATCTCAACT-CATTTCTTAATCACCGTGTAGTGTGCACGAGTAGTTAGTTGTACGCAAGAATCCCATGG------TCTT-TG---AC-CACTAC--T----AG--AGC---AT--AGA---C---TATTG-CACTGG--TCA------CACAATTC----TAGGT--GATT---TGG
gi|10 : cacA-AGGGCAATCT-A-----TGCTTTATTTCAGA-AG----TTGCAT-TTGCAC------TATT-----T---TTGC---ATAGTATATA--A--C-TTT-G--AA-TG-CAG-TGTGTT-ATCCGTGT-----AATG-ATCA-T-C--CTA-A----TTTACGTCAA--TA-ATA-T----------CCA-TTCCATAAACATGTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAC-----------ACTTAC--G--A----AGATAG-TGAGCGGGGT---T---TGGTG-CGCTGA--TCAG-----AACAATAG----TAGGACGGATT-----GGTTCC-TG---CTG----T--CGCAAAGAATAAC---C-C--GGCC-TGG------G-C--AAGTGGGT
gi|43 : -AGGGCAAC-T-ACTGTATG-TTTATTT-AAG-AG----TT-CAT-T-GCAG------TCTT-----T---GTGCT--TTA-TAAAAG--A--TATCTAG--GAATG-CAG-AATGC--AC-----T-----G-TG-ATCCAT-C--CTA-A---ACTT
gi|68 : GCAGT-T-A-----TA-TTTATTT-CAG-AG----TT-CAT-C-GCAA------TCTC-----G---ATG----GTA-CA-AAA--A--TATTT-T--AATTA-CAG-T
gi|40 : AGT-T-A-----TG-TTTATTC-AGG-AG----TT-CGT-A-GTGAC-----TCTTACAAAT---GTGTT--ATG-----AA--A--TATAT-G--AAATC-TGG-AGTGT--ATTA-CGT-----A-TG-ATTC-T-C--TTA-A---AT
gi|60 : GT-T-A-----TG-TTTGTTA-AAAGAG----GT-CAT-T-GCAA------TCTT-----T---ATGCT---TGTCATAAA--A--TATTT-C--ACATG-CAG-CATGC--CTCTGTGT-----ggctgtctcattt
gi|38 : TT-AAG-AG----TT-CATGT-GCAA------TATG-----T---GTGCT--ATA-TCTAAA--AAGTATTT-G---AATG-CAG-TGTCT--ATAT-TGT-----A-C--ATCT-T-C--TTG-G---GTTTACGCC-A--AT-AAC-TG--T---ATTCCATTTCCA
gi|44 : -AG----TT-GAT-T-GCAA------GATT-----T---GTGCT--TTA-TATAAACAA--TGTTT-T--AAATT-CAG-TGTGT--ATCT-TGT-----A-TG-ATCC-T-C--TT-------TTTATGTCAA--
gi|49 : atattcacttcT-T-GCAA------T--------T---GTTTC--GAA-TATAGA-----TATTT-AGTACATG-TA--TATGT--ATAT-TGT-----A-TG-ATCC-T-C--TTA-A---ATTTACATCAA--AT--TACTG--T---ATCCC-TTTCCtttcc
gi|18 : ATT-----T---TTCCC--ATA-AATAAA--A--TATTT-G--AAATG-CAG-TGTGT--ATCT-TGT-----A-TG-ATCC-T-CTTTTA-AAATATTTACGTCAC--AT-AAT-TG--T---GTCCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-TG---ACTTGC--C--T----AGGTA----------GT---C---TAGCG-TGCTGG--TCA------CAT-CTGC----T
gi|8 : gaTGCT--ATA-TAGAAA--A--TATTT-G--AAATG-TCG-TGTGT--ATCT-TGC-----A-TG-GTCC-T-C--TTA-A---ATATATGCCAATAAT-AAC-TG--T---ATCCCATTTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA----------G---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTGG--TCA------CACGCTTC----TAGGA--GAAT---TGGTTAGG-CA---G-G----T--CGT-GAGTTCAAC---C-CCGGGCC-GGGGCTGAAG-CGGAAGTGGGTATC
gi|25 : AAA--A--TATTT-C--AAATG-CAG-TGTAT--ATCT-TGT-----A-TG-ATTC-TGT--CCA-A------TGCATCAA--AT-GGC-CG--T---ATCCCGTATTCATcatgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|2 : A--A--TATTT-C--AAATT-CAG-TGTGT--TTCC-TGTACTACA-TGTAT-C-T-C--C-A-A---ATTTACATGAA--AT-GAA-TG--TATAATCCTATTTCCATTTTCAATGACAGTATAACATGGCACGGCGTGGTGAAAATTTCACTTTCTTGCAAACAAGT--TTGT-TG---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTGC--TCA------GACACAGC----CAGGA--GATT---TGACTCCG-CA---G-G----T--CAA-AAGCTGAAC---T-ACGGGTA-GGG------G-CGGACGT---TATCcttgtttggcgcgtgggattgcttagtcgttctcgctcagttttagtggctttcagcggtctaacgttgtggtcacatgctgaaga
gi|21 : --TATTT-C--AAGTG-CAA-TGTCC--AGCT-TGT-----A-TG-ATCA-T----CTACA---ATTAACGT------T-ACA-TGATT---AACCCATCTCCATcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|72 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcG-CAG-TGTGGGAATCT-TGT-----A-TA-ATCC-T-T--TTA-G---ATTTATGTCAA--AT-AAT-TG--T---ATC
gi|9 : G-TGTCT--ATCG-TGT-----A-TG-ATCC-T-C--CTA-A---ATTCACGTCAA--AT-AGC-TG--T---ATCCCGTTTC--TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTT-TT---ACTTAC--C--T----AGATAACCG-------------------------AG--TCA------CAGGCTGC----AAGGA--TATT---TGGTTCTG-CA---G-G----T--CGT-GAGTTCAACGTACACCGGGAC-AGG------A-CGGAAGTGGGTATC
gi|39 : atatgcattttaatagtactTCTT-CG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGG--TCA------CACGCTGC----T---A--GATT---TAGTTCTG-CA---G-G----T--CTA-GAGTTatgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
gi|70 : aattttatttttcgaagcaagt-TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTGA--TCA------CACGCTGC----TATGA--cgggtg
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCT-GTTTCA------CACGCTGC----T---A--GATT---TAGTTCTG-CA---G-G----T--CTA-GAGTTTat
gi|26 : ---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTGG--CCG------CGGGCTTC----TAGGA--GGTT---TGAATCCA-CA---G-G----T--CAT-GAGTTCAAC---C-ACGGGTG-GGG------G-TTGAAGCTGGTATCcgggtggg
gi|46 : cttCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-CG-------------------CTGC----TTGGG--GGTT---T-GCTCTG-TA---C-ATAGGT--AGC-GAGTTCAAC---C-CCAGGCT-GGG------A-TGGAGGcatatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTGG--TTATACATGTACATTGC----TAGCA--GATT---GGGTTCGG-CA---G-G----T--CGT-GA----------------GCC-GGG------G-CGGAAATGTGTATg
gi|24 : CGAGC--GGT---C---TAGCG-CGCTGG--TCA------CACGCTCC-------GA--GATT---TGTTTCCG-CA---G-G----T--TGT-GAGTTCAAC---C-C----TT-GGG------G-CGGAAGTGGGTATCttat
gi|34 : GAGT--GGT---A---TAGAAACGCTGA--TCA------TGAAATGC----TAGAT--TATTAGTTAGATCTA--A---C-GGG--T--TGT-AAGTTCAAC---C-CTTGGCC-GGG------GACGGAAGTGGATATcatgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|51 : GT---C---TTGGG-CACTAC--TCA------GATGCTGT----CAGTA--GGTT---TGG-TCACGCA---G-A----C--CGT-GAGTGCAAC---C-CCGGACT--GC------G-CGGAAGTGGATtcaccgagcttccacca
gi|27 : AACG-CGCTGA--TCA------CACACTGCATGCTGGGA--GATT---TTGATTCTGCA---G-G----T--CGT-GAGTC-AAC---C-C--GTCCTGGG------A-CGGAAGTGGGTATgcccactc
gi|33 : A------CACCCTGC----TAGGA--GATT---TAGTTCTG-CA---G-G----T--AGC-GAGTTCAAC---T-CCGGGCA-GGG------A-TAGATGTGGGTACCtcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|41 : aGAA--GAAT---TGGTTTCG-TA---G-G----T--CGT-GAGTTTAAC---C-TCGGGTA-TGA------G-AGGAAGTGGGTATCcatatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|21 : --GATT---TGGTTTCG-CAGGTC-G----TGACGT-GAGTTCCAT---C-CCAGGCC-GGG------C-CGGACCTGAGTGTCcaaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|57 : g----T--CGT-GAGTTCAAC---C-GCGTTCC-AGG------G-CGGAAGTGGGTATCcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|52 : cagg----T--CGT-GAGGTCAAC---C-ACAGGCC-GTG------G-CAGAAGTGGGTGTCcatgtaatatttttctttgtgctttatattatatatttc
gi|54 : ctagaccgc----T--CGT-GAGTTCAAC---C-CCGGGTA-GAG------G-AGGAAATGGG-ATCtatagaatagtgaataacttcgtgctttagcaatcaacatt
37 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|74 ): CGCAGGACCGGGGCGGATGTGGGTATCCATGTAATAGAGA
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC
Alignments
lowQualScore : 1111111111111 6666666666666666666666666666666 11111111111111111111 111111 666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 2 444 2 2222222222222 0000000000000000000000000000000 3 44 2 3 77777 3 2 2 3 8888 2 2 2 00000000000000000000 2 333333 33 22 7777 22 1 1 2 22 4 2 55555 2 2 2 6666666666 33 44 444 333333333333333333333333333333333333333333333333333333333333333333 3 555 33 6666666 22 333 333 2 22 777777 0 4444 0 22 333 1 1 333 1 1 333 44444 22 333 1 0 22 555555 1 2
lowQualScore : . ... . ............. ............................... . .. . . ..... . . . . .... . . . .................... . ...... .. .. .... .. . . . .. . . ..... . . . .......... .. .. ... .................................................................. . ... .. ....... .. ... ... . .. ...... . .... . .. ... . . ... . . ... ..... .. ... . . .. ...... . .
lowQualScore : 7 777 5 9999999999999 2222222222222222222222222222222 6 66 9 1 77777 1 9 9 1 9999 9 7 7 88888888888888888888 5 777777 11 99 8888 88 9 9 0 88 2 1 66666 2 2 2 3333333333 44 66 777 999999999999999999999999999999999999999999999999999999999999999999 5 444 99 7777777 99 555 555 0 77 444444 1 2222 9 55 333 9 9 555 9 7 000 33333 66 333 9 2 55 555555 9 1
consensus : NCGGGGCGGAA-GTGGGTATCCA---TGTA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-T-C--TTA-A---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTNCAANTNNNNNNNNANNNNGCACGGNNNGNTGGNNGTNCNNNNNNNTCNCANGNTANTT-TCTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
Reference ( family-180 ) : NCGGAGCGGAA-GTGGGTATCCA---TGTA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-T-C--CTA-A---ATTTACGTCAA--ATANNTGTAT---CCCATTTCCAT--NANCAANTNNNNNNNNANNNNGCACGGNNNGNTGGNNGTNCNNNNNNNTCNCANGNTANTC-TCTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
gi|10 : -AGGGCAATCT-A-----TGCTTTATTT-C-A-GAA---GTTGCAT-TTGCAC------TA-TT-----T---TTGCATAGTAT-ATAA--------CTT-T--GA--ATG-CAG-TGTGTT--ATCCGTGTAA-----TG-ATCA-T-C--CT--A---ATTTACGTC-A--ATAA---TAT----CCA-TTCCAT--AAACATGTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAC----------ACTTAC--G--A----AGATAGT-GAGCGGGGT---T---TGGTG-CGCTG-ATCAG-----AACAATAG----TAGGACGGA-T---T-G-GT---TCCTG-C-TGTCGCAAAGA-----AT--AA--C---C-C--GGCC-TGG------G-C--AAGTG-GGT
gi|12 : aA-AT-------------AGCGAAATT-TGCGTGCTTTATA------------TTACAAATTTTTC------TTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-A-A-GATAACTTT-CAT-T-GCGC------TATTT-----T---GTGC-TT-TATAATCAA--A--TATTT-T--AA--A-G-TAG-AATG-T--ATCT-GGT-A-----TG-A------------------------TCAA--ATAGCTA------CC--TTTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-A-A-GA----ATT-AAA-T-GCAA------TA-T-------------------GT-ATAA--------TTT-T--A----------------T--ATTA-TAT-A-----TG-ATCC-T-C--TTA-G---ATTTACATCAA--ATGATTGTAT---CTCAACTC-AT--TTCTTAATCACCGTGTAGTGTGCACGAGTAGTTAGTTGTACGCAAGAATCCCATGGT------CTTTG---AC-CACTAC--T----AGAGCATAGA----------C---TATTG-CACTG-GTCA------CACAATTC----TAGGT--GATT---T-G-G
gi|18 : cacA-TT-----T---TTCC-CA-TAA-ATAAA--A--TATTT-G--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-T-CTTTTA-AAATATTTACGTCAC--ATAATTGTGT---CCCATTTCCAT---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNTTG---ACTTGC--C--T----AG--------GT--AGT---C---TAGCG-TGCTG-GTCA------CAT-CTGC----T
gi|19 : gaC--GGC---T---TAGCG-CCACG-TTTG------TACCCTAC----CAA-----ATA---T-GCGC---TCC-G-CAGGTCGT---GA-----GTTCAATTC---C-CCGTGTA-GAG------G-CAAAAGTG-
gi|19 : T-------------GGTTAATTTTTTCCTGCTCTATA------------T-----------CATATTCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGA-TA----ACT-CAT-T--CAA------TA-AT-----TCGCGTGC-CA-CA----AAA--A--TATTT-C--AA--ATGCCAG-TAT--T--ATcatttggttaattttttcctgctctatatcatattcttcacctaatggccgtttacgtttatttagataactcattcaataattcgcgtgccacaaaaatatttcaaatgccagtattat
gi|2 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtagaggcaaaagtgcattA--A--TATTT-C--AA--ATT-CAG-TGTG-T--TTCC-TGT-ACTACATGTATC--T-C--C-A-A---ATTTACATGAA--ATGAATGTATAATCCTATTTCCAT--TTTCAATGACAGTATAACATGGCACGGCGTGGTGAAAATTTCACTTTCTTGCAAACAAGTT-TGTT-G---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTG-CTCA------GACACAGC----CAGGA--GATT---T-G-AC---TCC-G-CAGGTCAA---AA-----GCTGAA--C---T-ACGGGTA-GGG------G-CGGACGT----TATC
gi|21 : --GATT---T-G-GT---TTC-G-CAGGTCGT---GACGTGAGTTCCA--T---C-CCAGGCC-GGG------C-CGGACCTG-AGTGTCcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : gCGGGCCGGAC-CTGAGTGTCCA---TACA-AT-------------AGTGAATTTCTCTGTGCTTTACATCAAAATATT--T-----------C------TTCAC-TG-AGGGCAGT---------TC-TCTATTTCA-A-G-------------T-GCAA------TG-Tcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|21 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggc--TATTT-C--AA--GTG-CAA-TGTC-C--AGCT-TGT-A-----TG-ATCA-T----CTACA---ATTAACGTTAC--ATGAT--TAA---CCCATCTCCAT--ccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|24 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTCC-------GA--GATT---T-G-TT---TCC-G-CAGGTTGT---GA-----GTTCAA--C---C-C----TT-GGG------G-CGGAAGTG-GGTATC
gi|24 : GGGGCGGAA-GTGGGTATCCA---TGTA-AT-------------TGAGAATTTCTTTCTGCTTTATA------------TTGGAATATC--C------TTCAG-TT-ATGGAAGT-catgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttAAA--A--TATTT-C--AA--ATG-CAG-TGTA-T--ATCT-TGT-A-----TG-ATTC-TGT--CCA-A------TGCATCAA--ATGGCCGTAT---CCCGTATTCAT--gcgacattcaacttcagggatacttaaaagtccagact
gi|25 : AGC--GGT---C---TAACG-TTGTG-GTCA------CATGCTGcttgtttggcgcgtgggattgcttagtcgttctcgctcagttttagtggctttcagcggtctaacgttgtggtcacatgctgaaga
gi|26 : aaaatatttcaaatgcagtgtatatcttgtatgattctgtccaatgcatcaaatggccgtatcccgtattcatcttgtttggcgcgtgggattgcttagtcgttctcgctcagttttagtggctttc---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTG-GCCG------CGGGCTTC----TAGGA--GGTT---T-G-AA---TCC-A-CAGGTCAT---GA-----GTTCAA--C---C-ACGGGTG-GGG------G-TTGAAGCT-GGTATCaaga
gi|26 : cttGGGGTTGAA-GCTGGTATCCA---TATA--T-------------AGTAAATCTCTCAGTGCTT--TA------------C-----------C------TTTAC-catatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|27 : cttatttgcccataggtgttcgaaaagtctagcttgctggccgcgggcttctaggaggtttgaatccacaggtcatgagttcaaccacgggtgAACG-CGCTG-ATCA------CACACTGCATGCTGGGA--GATT---TTG-AT---TCT-G-CAGGTCGT---GA-----G-TCAA--C---C-C--GTCCTGGG------A-CGGAAGTG-GGTATaatgaacgtt
gi|27 : GGGACGGAA-GTGGGTATTCG---TGGA-ATTGTAAATTAGAACAGTGAATTTCCTTGTGCTT--TA------------T-----------C------CCCAC-Ttcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|32 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctAC-TA-AGGGCAAT-T-A-----TG-TTAACT--A-C-GA----GTT-AAT-T-GCAA------TA------------GTGC-T--T-T-ATAAA--A--TATTT-TG-AA--ATG-CAGGTGCA-T--ATCT-TGT-A-----TG-ATCC-T-C--TTA-G---ATTTATGTCAA--ATAATTGTAT---CCCgtttgtgatata
gi|33 : A------CACCCTGC----TAGGA--GATT---T-A-GT---TCT-G-CAGGTAGC---GA-----GTTCAA--C---T-CCGGGCA-GGG------A-TAGATGTG-GGTACC
gi|33 : aGAT-GTGGGTACCCA---TATG-AT-------------AGTGAATTTCTCTGTGCTTTATA------------T-----------catatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|34 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcagggataGAGT--GGT---A---TAGAAACGCTG-ATCA------TGAAATGC----TAGAT--TATTAGTT-A-GA---TCT-AACGGGTTGT---AA-----GTTCAA--C---C-CTTGGCC-GGG------GACGGAAGTG-GATATacatgtgctttta
gi|35 : GA--GGTT---T-G-GT---TCC-G-CAGGTCAT---GA-----ATTCAA--C---C-GCTTGCC-AGA------G-TGGAA-TGTGGTATCtcaccgagcttccacca
gi|35 : acaCAGAGTGGAATGTGG-TATCCA---TGTA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------Tcatgtaatagtgaatttctttgtgctttatatctattttttttttacctag
gi|38 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcTT-A-A-GA----GTT-CATGT-GCAA------TA-TG-----T---GTGC-TA-TAT-CTAAA--AAGTATTT-G---A--ATG-CAG-TGTC-T--ATAT-TGT-A-----C--ATCT-T-C--TTG-G---GTTTACGCC-A--ATAACTGTAT---TCCATTTCCAattttttttttacctag
gi|39 : -TCTTCG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTG-GTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTC
gi|4 : aattttatttttcgaagcaagtCGGAGAGGAA-GCGTTTATCCG---TGTA-AT-------------AGTGAATTCCTTTGTGCTTTAT-------------T-----------C------TGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-A-A-AA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAC-ATAAA--A--TATTT-G--AA--ACG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-T-C--CTA-A---ATTTACGTCAA--ATATATGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTA-GTCA------CACACTGC----TAGGA--GATT---T-G-GA---TCC-C-CACATCGT---GA-----GTTTAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATCgggtg
gi|40 : gAGT-T-A-----TG-TTTATTC-A-G-GA----GTT-CGT-A-GTGAC-----TC-TTACAAAT---GTGT-TA-TG-----AA--A--TATAT-G--AA--ATC-TGG-AGTG-T--ATTA-CGT-A-----TG-ATTC-T-C--TTA-A---AT
gi|41 : GAA--GAAT---T-G-GT---TTC-G-TAGGTCGT---GA-----GTTTAA--C---C-TCGGGTA-TGA------G-AGGAAGTG-GGTATCggctgtctcattt
gi|41 : GAGAGGAA-GTGGGTATCCAAATTGTATAA-------------AGTGAATTTC-CTGTGTTTTATA------------caaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|43 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtat-AGGGCAAC-T-ACTGTATG-TTTATTT-A-A-GA----GTT-CAT-T-GCAG------TC-TT-----T---GTGC-TT-TAT-AAAAG--A--TATCTAG--GA--ATG-CAG-AATG-C--AC-----T-G-----TG-ATCCAT-C--CTA-A---ACTTagtaactacatg
gi|44 : A----GTT-GAT-T-GCAA------GA-TT-----T---GTGC-TT-TAT-ATAAACAA--TGTTT-T--AA--ATT-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-T-C--TT-------TTTATGTCAA--
gi|46 : atattcacttcCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-------------------CGCTGC----TTGGG--GGTT---T-G-CTCTGTAC-A-TAGGTAGC---GA-----GTTCAA--C---C-CCAGGCT-GGG------A-TGGAGGtttcc
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTG-GTTATACATGTACATTGC----TAGCA--GATT---G-G-GT---TCG-G-CAGGTCGT---GA-----------------------GCC-GGG------G-CGGAAATG-TGTATg
gi|49 : T-T-GCAA------T---------T---GTTT-CG-AAT-ATAGA-----TATTT-AGTAC--ATG-TA--TATG-T--ATAT-TGT-A-----TG-ATCC-T-C--TTA-A---ATTTACATCAA--ATTACTGTAT---CCC-TTTCCttat
gi|5 : GCGGAA-GTGCGTATCTA---TGCC-AT-------------AGTGAATTTCTTTGTGCTTTATATTAAAATATT--T-----------C------TTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-A-C-TA----GTT-CAT-T-GCAATGCTAGTA-TT-----T---GTGC-T--T-T-ATAAA--A--TATTT-C--AA--ATG-CAG-ACAG-T--ATCA-TGT-A-----TG-ATCC-T-C--T-----------------A--ATGACTGTAT---CCCATTTCCA---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNTAG---ACATGC--C--T----AGA--GTCGATC--GGT---C---TAGCG-AGCTG-GTCA------CGCGCTGC----TTGGA--GATT---T-G-GT---TCT-A-CAGGACGC---GA-----GTTCAA--C---C-CCAGGCA-AGG------G-CAGAAGT
gi|51 : gGT---C---TTGGG-CACTA-CTCA------GATGCTGT----CAGTA--GGTT---T-G-GT---CAC-G-CAGACCGT---GA-----GTGCAA--C---C-CCGGACT--GC------G-CGGAAGTG-GAT
gi|52 : CC-G-C---TCGT---GA-----GGTCAA--C---C-ACAGGCC-GTG------G-CAGAAGTG-GGTGTCgcccactc
gi|52 : ctagaGCAGAA-GTGGGTGTCTA---TAGA-AT-------------AGTGAATAACTTCGTGCTTTAtatagaatagtgaataacttcgtgctttagcaatcaacatt
gi|54 : ctagaccgctcgtgaggtcaaccacaggccgtg-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGTA-GAG------G-AGGAAATG-GG-ATCgcaatcaacatt
gi|55 : aGGAA-GTGGGTATCAG---TGTA-AT-------------AGTGAATTTCTTTGTGCTGTATA------------T-----------cattagaaaatgaatttctatctgtctcttatcgttttcttttt
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGTTTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTtagataatatttcctcaataacggctatatatactttattt
gi|57 : -CAGGTCGT---GA-----GTTCAA--C---C-GCGTTCC-AGG------G-CGGAAGTG-GGTATCtcgggtggg
gi|57 : CAGGGCGGAA-GTGGGTATCCA---TGTA-AT-------------ATT---TTTCTTTGTGCTTTATA------------T-----------catgtaatatttttctttgtgctttatattatatatttc
gi|60 : caggtcgtgagttcaaccgcgttcGT-T-A-----TG-TTTGTTA-A-AAGA----GGT-CAT-T-GCAA------TC-TT-----T---ATGC-T--TGTCATAAA--A--TATTT-C--AC--ATG-CAG-CATG-C--CTCTGTGT-tatatatttc
gi|68 : GCAGT-T-A-----TA-TTTATTT-C-A-GA----GTT-CAT-C-GCAA------TC-TC-----G---ATGG-TA-CA----AAA--A--TATTT-T--AA--TTA-CAG-T
gi|70 : TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTG-ATCA------CACGCTGC----TATGA--
gi|72 : G-CAG-TGTG-GGAATCT-TGT-A-----TA-ATCC-T-T--TTA-G---ATTTATGTCAA--ATAATTGTAT---Cat
gi|74 : CGGGGCGGAT-GTGGGTATCCA---TGTA-AT-------------AGAGA
gi|8 : cgcaggacTGC-TA-TAT-AGAAA--A--TATTT-G--AA--ATG-TCG-TGTG-T--ATCT-TGC-A-----TG-GTCC-T-C--TTA-A---ATATATGCCAATAATAACTGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA---------G---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTG-GTCA------CACGCTTC----TAGGA--GAAT---T-G-GT---TAG-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGGCTGAAG-CGGAAGTG-GGTATC
gi|8 : GAAGCGGAA-GTGGGTATCCA---TGTA-AT-------------AGTGAATTTCTTTGTGCcatgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctATTT-T--AATAGTA-CTG-TGTC-T--ATCG-TGT-A-----TG-ATCC-T-C--CTA-A---ATTCACGTCAA--ATAGCTGTAT---CCCGTTTCTAA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-TTT-TTTTTT---ACTTAC--C--T----AGATAACCGAG--------------------------TCA------CAGGCTGC----AAGGA--TATT---T-G-GT---TCT-G-CAGGTCGT---GA-----GTTCAA--CGTACACCGGGAC-AGG------A-CGGAAGTG-GGTATCgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : atatgcGGA-CGGAA-GTGGGTATC-A---TGTA-AT-------------AGTGAATTTCTTAGCGTTTTATATTAATTAGTATTT-----------C------TTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A-atgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC
Alignments
lowQualScore : 1111111111111 5555555555555555555555555555555 11111111111111111111 111111 666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 2 333 4444 4 1111111111111 4444444444444444444444444444444 3 44 2 3 77777 3 2 2 3 8888 2 2 2 00000000000000000000 2 333333 33 22 7777 22 1 1 2 22 4 77777 2 2 444444444 33 2 444 333333333333333333333333333333333333333333333333333333333333333333333 555 33 6666666 22 333 333 2 22 777777 0 4444 0 22 333 1 1 333 1 1 333 44444 22 333 1 0 22 1 555555 2
lowQualScore : . ... .... . ............. ............................... . .. . . ..... . . . . .... . . . .................... . ...... .. .. .... .. . . . .. . ..... . . ......... .. . ... ..................................................................... ... .. ....... .. ... ... . .. ...... . .... . .. ... . . ... . . ... ..... .. ... . . .. . ...... .
lowQualScore : 2 999 7777 2 6666666666666 5555555555555555555555555555555 6 66 9 1 77777 1 9 9 1 9999 9 7 7 88888888888888888888 5 777777 11 99 8888 88 9 9 0 88 2 44444 2 2 999999999 44 0 777 222222222222222222222222222222222222222222222222222222222222222222222 444 99 7777777 99 555 555 0 77 444444 1 2222 9 55 333 9 9 555 9 7 000 33333 66 333 9 2 55 9 555555 1
consensus : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-----ATG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGT---ATCCCATTTCCAT--NTCCAAANANNNGTTTANNNNGCACGGNNNGNTGGNNGTNCNNNNNNNTCNCANGNTANTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGG-C------GGAAGTG-GGTATC
Reference ( family-180 ) : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-----ATG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGT---ATCCCATTTCCAT--NTNCAANTNNNNNNNNANNNNGCACGGNNNGNTGGNNGTNCNNNNNNNTCNCANGNTANTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGG-C------GGAAGTG-GGTATC
gi|10 : -AGGGCAATCT-A-----TGCTTTATTT-C-A-GAA---GTTGCAT-TTGCAC------TA-TT-----T---TTGCATAGTAT-ATAA--------CTT-T--GA--ATG-CAG-TGTGTT--ATCCGTGTA----ATG-ATCA-TC--CT-A---ATTTACGTC-A--ATAA---T---AT-CCA-TTCCAT------AAACATGTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-TAAC-------ACTTAC--G--A----AGATAGT-GAGCGGGGT---T---TGGTG-CGCTG-ATCAG-----AACAATAG----TAGGACGGA-T---T-G-GT---TCCTG-C-TGTCGCAAAGA-----AT--AA--C---C-C--GGCC-TGGG-C--------AAGTG-GGT
gi|12 : aA-AT-------------AGCGAAATT-TGCGTGCTTTATA------------TTACAAATTTTTC------TTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-A-A-GATAACTTT-CAT-T-GCGC------TATTT-----T---GTGC-TT-TATAATCAA--A--TATTT-T--AA--A-G-TAG-AATG-T--ATCT-GGT-----ATG-A----------------------TCAA--ATAGCTA------CC--TTTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-A-A-GA----ATT-AAA-T-GCAA------TA-T-------------------GT-ATAA--------TTT-T--A----------------T--ATTA-TAT-----ATG-ATCC-TC--TTAG---ATTTACATCAA--ATGATTGT---ATCTCAACT-CAT--TTCTTAATCACCGTGTAGTGTGCACGAGTAGTTAGTTGTACGCAAGAATCCCATGG------T--CTTTG---AC-CACTAC--T----AGAGCATAGA----------C---TATTG-CACTG-GTCA------CACAATTC----TAGGT--GATT---T-G-G
gi|18 : cacA-TT-----T---TTCC-CA-TAA-ATAAA--A--TATTT-G--AA--ATG-CAG-TGTG-T--ATCT-TGT-----ATG-ATCC-TCTTTTAAAATATTTACGTCAC--ATAATTGT---GTCCCATTTCCAT---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTTG---ACTTGC--C--T----AG--------GT--AGT---C---TAGCG-TGCTG-GTCA------CAT-CTGC----T
gi|19 : gaC--GGC---T---TAGCG-CCACG-TTTG------TACCCTAC----CAA-----ATA---T-GCGC---TCC-G-CAGGTCGT---GA-----GTTCAATTC---C-CCGTGTA-GAGG-C------AAAAGTG-
gi|19 : GAGGCAAAA-GTG------CA---T-----T---T-------------GGTTAATTTTTTCCTGCTCTATA------------T-----------CATATTCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGA-TA----ACT-CAT-T--CAA------TA-AT-----TCGCGTGC-CA-CA----AAA--A--TATTT-C--AA--ATGCCAG-TAT--T--ATcatttggttaattttttcctgctctatatcatattcttcacctaatggccgtttacgtttatttagataactcattcaataattcgcgtgccacaaaaatatttcaaatgccagtattat
gi|2 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtaA--A--TATTT-C--AA--ATT-CAG-TGTG-T--TTCC-TGTACTACATGTATCT-CC----AA---ATTTACATGAA--ATGAATGTATAATCCTATTTCCAT--TTTCAATGACAGTATAACATGGCACGGCGTGGTGAAAATTTCACTTTCTTGCAAACAAGTT-T---GTTG---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTG-CTCA------GACACAGC----CAGGA--GATT---T-G-AC---TCC-G-CAGGTCAA---AA-----GCTGAA--C---T-ACGGGTA-GGGG-C------GGACGT----TATC
gi|2 : GGGGCGGAC-GT---TATCCA---TAAAATTA-AT-------------AGCG-ATTTCTTcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : aatatttcaaattcagtgtgtttcctgtactacatgtatctccaaatttacatgaaatgaatgtataatcctatttccattttcaatgacagtataacatggcacggcgtggtgaaaatttcactttcttgcaaacaagtttgttgacttgtcgagatgaataagcaatatacatataatacactgctcagacacagccaggagatttgactccgcaggtcaaaagctgaactacgggta--GATT---T-G-GT---TTC-G-CAGGTCGT---GACGTGAGTTCCA--T---C-CCAGGCC-GGGC-C------GGACCTG-AGTGTCctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : gCGGGCCGGAC-CTGAGTGTCCA---TA----CA-AT-------------AGTGAATTTCTCTGTGCTTTACATCAAAATATT--T-----------C------TTCAC-TG-AGGGCAGT---------TC-TCTATTTCA-A-G-------------T-GCAA------TG-Tcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|21 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggc--TATTT-C--AA--GTG-CAA-TGTC-C--AGCT-TGT-----ATG-ATCA-TC--TACA---ATTAACGTTAC--ATGAT--T---AACCCATCTCCAT--ccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|24 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTCC-------GA--GATT---T-G-TT---TCC-G-CAGGTTGT---GA-----GTTCAA--C---C-C----TT-GGGG-C------GGAAGTG-GGTATC
gi|24 : GGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------TGAGAATTTCTTTCTGCTTTATA------------TTGGAATATC--C------TTCAG-TT-ATGGAAGT-catgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttAAA--A--TATTT-C--AA--ATG-CAG-TGTA-T--ATCT-TGT-----ATG-ATTC-TG--TCCA---A--TGCATCAA--ATGGCCGT---ATCCCGTATTCAT--CTgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : AGC--GGT---C---TAACG-TTGTG-GTCA------CATGCTGtgtttggcgcgtgggattgcttagtcgttctcgctcagttttagtggctttcagcggtctaacgttgtggtcacatgctgaaga
gi|26 : aaaatatttcaaatgcagtgtatatcttgtatgattctgtccaatgcatcaaatggccgtatcccgtattcatcttgtttggcgcgtgggattgcttagtcgttctcgctcagttttagtggctttc---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTG-GCCG------CGGGCTTC----TAGGA--GGTT---T-G-AA---TCC-A-CAGGTCAT---GA-----GTTCAA--C---C-ACGGGTG-GGGG-T------TGAAGCT-GGTATCaaga
gi|26 : cttGGGGTTGAA-GCTGGTATCCA---TA----TA--T-------------AGTAAATCTCTCAGTGCTT--TA------------C-----------C------TTTAC-catatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|27 : cttatttgcccataggtgttcgaaaagtctagcttgctggccgcgggcttctaggaggtttgaatccacaggtcatgagttcaaccacgggtgAACG-CGCTG-ATCA------CACACTGCATGCTGGGA--GATT---TTG-AT---TCT-G-CAGGTCGT---GA-----G-TCAA--C---C-C--GTCCTGGGA-C------GGAAGTG-GGTATaatgaacgtt
gi|27 : GGGACGGAA-GTGGGTATTCG---TG----GA-ATTGTAAATTAGAACAGTGAATTTCCTTGTGCTT--TA------------T-----------C------CCCAC-Ttcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|32 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctAC-TA-AGGGCAAT-T-A-----TG-TTAACT--A-C-GA----GTT-AAT-T-GCAA------TA------------GTGC-T--T-T-ATAAA--A--TATTT-TG-AA--ATG-CAGGTGCA-T--ATCT-TGT-----ATG-ATCC-TC--TTAG---ATTTATGTCAA--ATAATTGT---ATCCCgtttgtgatata
gi|33 : A------CACCCTGC----TAGGA--GATT---T-A-GT---TCT-G-CAGGTAGC---GA-----GTTCAA--C---T-CCGGGCA-GGGA-T------AGATGTG-GGTACC
gi|33 : aGGGATAGAT-GTGGGTACCCA---TA----TG-AT-------------AGTGAATTTCTCTGTGCTTTATA------------T-----------catatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|34 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcaGAGT--GGT---A---TAGAAACGCTG-ATCA------TGAAATGC----TAGAT--TATTAGTT-A-GA---TCT-AACGGGTTGT---AA-----GTTCAA--C---C-CTTGGCC-GGGGAC------GGAAGTG-GATATacatgtgctttta
gi|35 : GA--GGTT---T-G-GT---TCC-G-CAGGTCAT---GA-----ATTCAA--C---C-GCTTGCC-AGAG-T------GGAA-TGTGGTATCtcaccgagcttccacca
gi|35 : acaCAGAGTGGAATGTGG-TATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------Tcatgtaatagtgaatttctttgtgctttatatctattttttttttacctag
gi|38 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcTT-A-A-GA----GTT-CATGT-GCAA------TA-TG-----T---GTGC-TA-TAT-CTAAA--AAGTATTT-G---A--ATG-CAG-TGTC-T--ATAT-TGT-----AC--ATCT-TC--TTGG---GTTTACGCC-A--ATAACTGT---ATTCCATTTCCAattttttttttacctag
gi|39 : T-T--CTTCG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTG-GTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTC
gi|4 : aattttatttttcgaagcaagCGGAGAGGAA-GCGTTTATCCG---TG----TA-AT-------------AGTGAATTCCTTTGTGCTTTAT-------------T-----------C------TGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-A-A-AA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAC-ATAAA--A--TATTT-G--AA--ACG-CAG-TGTG-T--ATCT-TGT-----ATG-ATCC-TC--CTAA---ATTTACGTCAA--ATATATGT---ATCCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT--CTTTG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTA-GTCA------CACACTGC----TAGGA--GATT---T-G-GA---TCC-C-CACATCGT---GA-----GTTTAA--C---C-CCGGGCC-GGGG-C------GGAAGTG-GGTATCgggtg
gi|40 : gAGT-T-A-----TG-TTTATTC-A-G-GA----GTT-CGT-A-GTGAC-----TC-TTACAAAT---GTGT-TA-TG-----AA--A--TATAT-G--AA--ATC-TGG-AGTG-T--ATTA-CGT-----ATG-ATTC-TC--TTAA---AT
gi|41 : GAA--GAAT---T-G-GT---TTC-G-TAGGTCGT---GA-----GTTTAA--C---C-TCGGGTA-TGAG-A------GGAAGTG-GGTATCggctgtctcattt
gi|41 : GGAA-GTGGGTATCCAAATTG----TATAA-------------AGTGAATTTC-CTGTGTTTTATA------------caaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|43 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtatgaga-AGGGCAAC-T-ACTGTATG-TTTATTT-A-A-GA----GTT-CAT-T-GCAG------TC-TT-----T---GTGC-TT-TAT-AAAAG--A--TATCTAG--GA--ATG-CAG-AATG-C--AC-----T-----GTG-ATCCATC--CTAA---ACTTagtaactacatg
gi|44 : A----GTT-GAT-T-GCAA------GA-TT-----T---GTGC-TT-TAT-ATAAACAA--TGTTT-T--AA--ATT-CAG-TGTG-T--ATCT-TGT-----ATG-ATCC-TC--TT------TTTATGTCAA--
gi|46 : atattcacttcCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-------------------CGCTGC----TTGGG--GGTT---T-G-CTCTGTAC-A-TAGGTAGC---GA-----GTTCAA--C---C-CCAGGCT-GGGA-T------GGAGGtttcc
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTG-GTTATACATGTACATTGC----TAGCA--GATT---G-G-GT---TCG-G-CAGGTCGT---GA-----------------------GCC-GGGG-C------GGAAATG-TGTATg
gi|49 : T-T-GCAA------T---------T---GTTT-CG-AAT-ATAGA-----TATTT-AGTAC--ATG-TA--TATG-T--ATAT-TGT-----ATG-ATCC-TC--TTAA---ATTTACATCAA--ATTACTGT---ATCCC-TTTCCttat
gi|5 : GGCGGAA-GTGCGTATCTA---TG----CC-AT-------------AGTGAATTTCTTTGTGCTTTATATTAAAATATT--T-----------C------TTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-A-C-TA----GTT-CAT-T-GCAATGCTAGTA-TT-----T---GTGC-T--T-T-ATAAA--A--TATTT-C--AA--ATG-CAG-ACAG-T--ATCA-TGT-----ATG-ATCC-TC--T----------------A--ATGACTGT---ATCCCATTTCCA---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTAG---ACATGC--C--T----AGA--GTCGATC--GGT---C---TAGCG-AGCTG-GTCA------CGCGCTGC----TTGGA--GATT---T-G-GT---TCT-A-CAGGACGC---GA-----GTTCAA--C---C-CCAGGCA-AGGG-C------AGAAGT
gi|51 : GT---C---TTGGG-CACTA-CTCA------GATGCTGT----CAGTA--GGTT---T-G-GT---CAC-G-CAGACCGT---GA-----GTGCAA--C---C-CCGGACT--GCG-C------GGAAGTG-GAT
gi|52 : CC-G-C---TCGT---GA-----GGTCAA--C---C-ACAGGCC-GTGG-C------AGAAGTG-GGTGTCgcccactc
gi|52 : ctagaCGTGGCAGAA-GTGGGTGTCTA---TA----GA-AT-------------AGTGAATAACTTCGTGCTTTAtatagaatagtgaataacttcgtgctttagcaatcaacatt
gi|54 : ctagaccgctcgtgaggtcaaccacaggc-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGTA-GAGG-A------GGAAATG-GG-ATCgcaatcaacatt
gi|54 : aGAGGAGGAA-ATGGG-ATCCA---T-----TAGAA-------------AATGAATTTCTATCTGTCTCTTA------------T-----------C------cattagaaaatgaatttctatctgtctcttatcgttttcttttt
gi|55 : acaggtcgtgagttcaaccccgggtaGGAA-GTGGGTATCAG---TG----TA-AT-------------AGTGAATTTCTTTGTGCTGTATA------------T-----------gttttcttttt
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGTTTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTtagataatatttcctcaataacggctatatatactttattt
gi|57 : -CAGGTCGT---GA-----GTTCAA--C---C-GCGTTCC-AGGG-C------GGAAGTG-GGTATCtcgggtggg
gi|57 : CAGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------ATT---TTTCTTTGTGCTTTATA------------T-----------catgtaatatttttctttgtgctttatattatatatttc
gi|60 : caggtcgtgagttcaaccgcgttcGT-T-A-----TG-TTTGTTA-A-AAGA----GGT-CAT-T-GCAA------TC-TT-----T---ATGC-T--TGTCATAAA--A--TATTT-C--AC--ATG-CAG-CATG-C--CTCTGTGT-----tatatatttc
gi|68 : GCAGT-T-A-----TA-TTTATTT-C-A-GA----GTT-CAT-C-GCAA------TC-TC-----G---ATGG-TA-CA----AAA--A--TATTT-T--AA--TTA-CAG-T
gi|70 : TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTG-ATCA------CACGCTGC----TATGA--
gi|72 : G-CAG-TGTG-GGAATCT-TGT-----ATA-ATCC-TT--TTAG---ATTTATGTCAA--ATAATTGT---ATCat
gi|74 : CGGGGCGGAT-GTGGGTATCCA---TG----TA-AT-------------AGAGA
gi|8 : cgcaggacTGC-TA-TAT-AGAAA--A--TATTT-G--AA--ATG-TCG-TGTG-T--ATCT-TGC-----ATG-GTCC-TC--TTAA---ATATATGCCAATAATAACTGT---ATCCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-----------G---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTG-GTCA------CACGCTTC----TAGGA--GAAT---T-G-GT---TAG-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGG-CTGAAGCGGAAGTG-GGTATC
gi|8 : GCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCcatgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctgaaATTT-T--AATAGTA-CTG-TGTC-T--ATCG-TGT-----ATG-ATCC-TC--CTAA---ATTCACGTCAA--ATAGCTGT---ATCCCGTTTCTAA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-TTT-T--TTTTT---ACTTAC--C--T----AGATAACCGAG--------------------------TCA------CAGGCTGC----AAGGA--TATT---T-G-GT---TCT-G-CAGGTCGT---GA-----GTTCAA--CGTACACCGGGAC-AGGA-C------GGAAGTG-GGTATCgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : atatgcCAGGACGGAA-GTGGGTATC-A---TG----TA-AT-------------AGTGAATTTCTTAGCGTTTTATATTAATTAGTATTT-----------C------TTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A-atgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC
Alignments
lowQualScore : 1111111111111 5555555555555555555555555555555 11111111111111111111 111111 8888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 2 333 4444 4 1111111111111 4444444444444444444444444444444 3 44 2 3 77777 3 2 2 3 8888 2 2 2 00000000000000000000 2 333333 33 22 7777 22 1 1 2 22 4 2 55555 2 2 444444444 33 2 444 4444444444444444444444444444444444444444444444444444444444444444444444444 555 33 7777777 0 22 333 333 2 22 777777 0 4444 0 22 333 1 1 333 1 1 333 44444 22 333 1 0 22 1 555555 2
lowQualScore : . ... .... . ............. ............................... . .. . . ..... . . . . .... . . . .................... . ...... .. .. .... .. . . . .. . . ..... . . ......... .. . ... ......................................................................... ... .. ....... . .. ... ... . .. ...... . .... . .. ... . . ... . . ... ..... .. ... . . .. . ...... .
lowQualScore : 2 999 7777 2 6666666666666 5555555555555555555555555555555 6 66 9 1 77777 1 9 9 1 9999 9 7 7 88888888888888888888 5 777777 11 99 8888 88 9 9 0 88 2 1 66666 2 2 999999999 44 0 777 6666666666666666666666666666666666666666666666666666666666666666666666666 000 77 3333333 2 99 555 555 0 77 444444 1 2222 9 55 333 9 9 555 9 7 000 33333 66 333 9 2 55 9 555555 1
consensus : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGNTNG-TTAGNCGTNCNNNNNNNTCGCANGNNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGG-C------GGAAGTG-GGTATC
Reference ( family-180 ) : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAANANNNGTTTANNNNG-CACGGNNNG-NTGGNNGTNCNNNNNNNTCNCANGNTANTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGG-C------GGAAGTG-GGTATC
gi|10 : -AGGGCAATCT-A-----TGCTTTATTT-C-A-GAA---GTTGCAT-TTGCAC------TA-TT-----T---TTGCATAGTAT-ATAA--------CTT-T--GA--ATG-CAG-TGTGTT--ATCCGTGTAA-----TG-ATCA-TC--CT-A---ATTTACGTC-A--ATAA---TAT----CCA-TTCCAT------AAACATGTGTTTNNNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-TAAC-------ACTTAC--G--A----AGATAGT-GAGCGGGGT---T---TGGTG-CGCTG-ATCAG-----AACAATAG----TAGGACGGA-T---T-G-GT---TCCTG-C-TGTCGCAAAGA-----AT--AA--C---C-C--GGCC-TGGG-C--------AAGTG-GGT
gi|12 : aA-AT-------------AGCGAAATT-TGCGTGCTTTATA------------TTACAAATTTTTC------TTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-A-A-GATAACTTT-CAT-T-GCGC------TATTT-----T---GTGC-TT-TATAATCAA--A--TATTT-T--AA--A-G-TAG-AATG-T--ATCT-GGT-A-----TG-A----------------------TCAA--ATAGCTA------CC--TTTCCATNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-A-A-GA----ATT-AAA-T-GCAA------TA-T-------------------GT-ATAA--------TTT-T--A----------------T--ATTA-TAT-A-----TG-ATCC-TC--TTAG---ATTTACATCAA--ATGATTGTAT---CTCAACT-CAT--TTCTTAATCACCGTGTAGTGTG-CACGAGTAG-TTAGTTGTACGCAAGAATCCCATGG------T--CTTTG---AC-CACTAC--T----AGAGCATAGA----------C---TATTG-CACTG-GTCA------CACAATTC----TAGGT--GATT---T-G-G
gi|18 : cacA-TT-----T---TTCC-CA-TAA-ATAAA--A--TATTT-G--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TCTTTTAAAATATTTACGTCAC--ATAATTGTGT---CCCATTTCCAT---NNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTTG---ACTTGC--C--T----AG--------GT--AGT---C---TAGCG-TGCTG-GTCA------CAT-CTGC----T
gi|19 : gaC--GGC---T---TAGCG-CCACG-TTTG------TACCCTAC----CAA-----ATA---T-GCGC---TCC-G-CAGGTCGT---GA-----GTTCAATTC---C-CCGTGTA-GAGG-C------AAAAGTG-
gi|19 : GAGGCAAAA-GTG------CA---T-----T---T-------------GGTTAATTTTTTCCTGCTCTATA------------T-----------CATATTCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGA-TA----ACT-CAT-T--CAA------TA-AT-----TCGCGTGC-CA-CA----AAA--A--TATTT-C--AA--ATGCCAG-TAT--T--ATcatttggttaattttttcctgctctatatcatattcttcacctaatggccgtttacgtttatttagataactcattcaataattcgcgtgccacaaaaatatttcaaatgccagtattat
gi|2 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtaA--A--TATTT-C--AA--ATT-CAG-TGTG-T--TTCC-TGT-ACTACATGTATCT-CC----AA---ATTTACATGAA--ATGAATGTATAATCCTATTTCCAT--TTTCAA-TGACAGTATAACATGGCACGGCGTG-GTGAAAATTTCACTTTCTTGCAAACAAGTT-T--GTT-G---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTG-CTCA------GACACAGC----CAGGA--GATT---T-G-AC---TCC-G-CAGGTCAA---AA-----GCTGAA--C---T-ACGGGTA-GGGG-C------GGACGT----TATC
gi|2 : GGGGCGGAC-GT---TATCCA---TAAAATTA-AT-------------AGCG-ATTTCTTcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : aatatttcaaattcagtgtgtttcctgtactacatgtatctccaaatttacatgaaatgaatgtataatcctatttccattttcaatgacagtataacatggcacggcgtggtgaaaatttcactttcttgcaaacaagtttgttgacttgtcgagatgaataagcaatatacatataatacactgctcagacacagccaggagatttgactccgcaggtcaaaagctgaactacgggta--GATT---T-G-GT---TTC-G-CAGGTCGT---GACGTGAGTTCCA--T---C-CCAGGCC-GGGC-C------GGACCTG-AGTGTCctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : gCGGGCCGGAC-CTGAGTGTCCA---TA----CA-AT-------------AGTGAATTTCTCTGTGCTTTACATCAAAATATT--T-----------C------TTCAC-TG-AGGGCAGT---------TC-TCTATTTCA-A-G-------------T-GCAA------TG-Tcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|21 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggc--TATTT-C--AA--GTG-CAA-TGTC-C--AGCT-TGT-A-----TG-ATCA-TC--TACA---ATTAACGTTAC--ATGAT--TAA---CCCATCTCCAT--ccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|24 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTCC-------GA--GATT---T-G-TT---TCC-G-CAGGTTGT---GA-----GTTCAA--C---C-C----TT-GGGG-C------GGAAGTG-GGTATC
gi|24 : GGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------TGAGAATTTCTTTCTGCTTTATA------------TTGGAATATC--C------TTCAG-TT-ATGGAAGT-catgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttAAA--A--TATTT-C--AA--ATG-CAG-TGTA-T--ATCT-TGT-A-----TG-ATTC-TG--TCCA---A--TGCATCAA--ATGGCCGTAT---CCCGTATTCAT--CT---------TGTTTGGCGCG-TG-GGATTGCTTAGTCGTTC-------TCGC---TCAGTT-T--TAGTG---GCTT------------------TC-AGC--GGT---C---TAACG-TTGTG-GTCA------CATGCTGgcgacattcaacttcagggatacttaaaagtccagact
gi|26 : ---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTG-GCCG------CGGGCTTC----TAGGA--GGTT---T-G-AA---TCC-A-CAGGTCAT---GA-----GTTCAA--C---C-ACGGGTG-GGGG-T------TGAAGCT-GGTATCaaga
gi|26 : cttGGGGTTGAA-GCTGGTATCCA---TA----TA--T-------------AGTAAATCTCTCAGTGCTT--TA------------C-----------C------TTTAC-catatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|27 : cttatttgcccataggtgttcgaaaagtctagcttgctggccgcgggcttctaggaggtttgaatccacaggtcatgagttcaaccacgggtgAACG-CGCTG-ATCA------CACACTGCATGCTGGGA--GATT---TTG-AT---TCT-G-CAGGTCGT---GA-----G-TCAA--C---C-C--GTCCTGGGA-C------GGAAGTG-GGTATaatgaacgtt
gi|27 : GGGACGGAA-GTGGGTATTCG---TG----GA-ATTGTAAATTAGAACAGTGAATTTCCTTGTGCTT--TA------------T-----------C------CCCAC-Ttcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|32 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctAC-TA-AGGGCAAT-T-A-----TG-TTAACT--A-C-GA----GTT-AAT-T-GCAA------TA------------GTGC-T--T-T-ATAAA--A--TATTT-TG-AA--ATG-CAGGTGCA-T--ATCT-TGT-A-----TG-ATCC-TC--TTAG---ATTTATGTCAA--ATAATTGTAT---CCCgtttgtgatata
gi|33 : A------CACCCTGC----TAGGA--GATT---T-A-GT---TCT-G-CAGGTAGC---GA-----GTTCAA--C---T-CCGGGCA-GGGA-T------AGATGTG-GGTACC
gi|33 : aGGGATAGAT-GTGGGTACCCA---TA----TG-AT-------------AGTGAATTTCTCTGTGCTTTATA------------T-----------catatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|34 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcaGAGT--GGT---A---TAGAAACGCTG-ATCA------TGAAATGC----TAGAT--TATTAGTT-A-GA---TCT-AACGGGTTGT---AA-----GTTCAA--C---C-CTTGGCC-GGGGAC------GGAAGTG-GATATacatgtgctttta
gi|35 : GA--GGTT---T-G-GT---TCC-G-CAGGTCAT---GA-----ATTCAA--C---C-GCTTGCC-AGAG-T------GGAA-TGTGGTATCtcaccgagcttccacca
gi|35 : acaCAGAGTGGAATGTGG-TATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------Tcatgtaatagtgaatttctttgtgctttatatctattttttttttacctag
gi|38 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcTT-A-A-GA----GTT-CATGT-GCAA------TA-TG-----T---GTGC-TA-TAT-CTAAA--AAGTATTT-G---A--ATG-CAG-TGTC-T--ATAT-TGT-A-----C--ATCT-TC--TTGG---GTTTACGCC-A--ATAACTGTAT---TCCATTTCCAattttttttttacctag
gi|39 : T-T--CTTCG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTG-GTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTC
gi|4 : aattttatttttcgaagcaagCGGAGAGGAA-GCGTTTATCCG---TG----TA-AT-------------AGTGAATTCCTTTGTGCTTTAT-------------T-----------C------TGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-A-A-AA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAC-ATAAA--A--TATTT-G--AA--ACG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--CTAA---ATTTACGTCAA--ATATATGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT--CTTTG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTA-GTCA------CACACTGC----TAGGA--GATT---T-G-GA---TCC-C-CACATCGT---GA-----GTTTAA--C---C-CCGGGCC-GGGG-C------GGAAGTG-GGTATCgggtg
gi|40 : gAGT-T-A-----TG-TTTATTC-A-G-GA----GTT-CGT-A-GTGAC-----TC-TTACAAAT---GTGT-TA-TG-----AA--A--TATAT-G--AA--ATC-TGG-AGTG-T--ATTA-CGT-A-----TG-ATTC-TC--TTAA---AT
gi|41 : GAA--GAAT---T-G-GT---TTC-G-TAGGTCGT---GA-----GTTTAA--C---C-TCGGGTA-TGAG-A------GGAAGTG-GGTATCggctgtctcattt
gi|41 : GGAA-GTGGGTATCCAAATTG----TATAA-------------AGTGAATTTC-CTGTGTTTTATA------------caaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|43 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtatgaga-AGGGCAAC-T-ACTGTATG-TTTATTT-A-A-GA----GTT-CAT-T-GCAG------TC-TT-----T---GTGC-TT-TAT-AAAAG--A--TATCTAG--GA--ATG-CAG-AATG-C--AC-----T-G-----TG-ATCCATC--CTAA---ACTTagtaactacatg
gi|44 : A----GTT-GAT-T-GCAA------GA-TT-----T---GTGC-TT-TAT-ATAAACAA--TGTTT-T--AA--ATT-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TT------TTTATGTCAA--
gi|46 : atattcacttcCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-------------------CGCTGC----TTGGG--GGTT---T-G-CTCTGTAC-A-TAGGTAGC---GA-----GTTCAA--C---C-CCAGGCT-GGGA-T------GGAGGtttcc
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTG-GTTATACATGTACATTGC----TAGCA--GATT---G-G-GT---TCG-G-CAGGTCGT---GA-----------------------GCC-GGGG-C------GGAAATG-TGTATg
gi|49 : T-T-GCAA------T---------T---GTTT-CG-AAT-ATAGA-----TATTT-AGTAC--ATG-TA--TATG-T--ATAT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACATCAA--ATTACTGTAT---CCC-TTTCCttat
gi|5 : GGCGGAA-GTGCGTATCTA---TG----CC-AT-------------AGTGAATTTCTTTGTGCTTTATATTAAAATATT--T-----------C------TTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-A-C-TA----GTT-CAT-T-GCAATGCTAGTA-TT-----T---GTGC-T--T-T-ATAAA--A--TATTT-C--AA--ATG-CAG-ACAG-T--ATCA-TGT-A-----TG-ATCC-TC--T----------------A--ATGACTGTAT---CCCATTTCCA---ANNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTAG---ACATGC--C--T----AGA--GTCGATC--GGT---C---TAGCG-AGCTG-GTCA------CGCGCTGC----TTGGA--GATT---T-G-GT---TCT-A-CAGGACGC---GA-----GTTCAA--C---C-CCAGGCA-AGGG-C------AGAAGT
gi|51 : GT---C---TTGGG-CACTA-CTCA------GATGCTGT----CAGTA--GGTT---T-G-GT---CAC-G-CAGACCGT---GA-----GTGCAA--C---C-CCGGACT--GCG-C------GGAAGTG-GAT
gi|52 : CC-G-C---TCGT---GA-----GGTCAA--C---C-ACAGGCC-GTGG-C------AGAAGTG-GGTGTCgcccactc
gi|52 : ctagaCGTGGCAGAA-GTGGGTGTCTA---TA----GA-AT-------------AGTGAATAACTTCGTGCTTTAtatagaatagtgaataacttcgtgctttagcaatcaacatt
gi|54 : ctagaccgctcgtgaggtcaaccacaggc-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGTA-GAGG-A------GGAAATG-GG-ATCgcaatcaacatt
gi|54 : aGAGGAGGAA-ATGGG-ATCCA---T-----TAGAA-------------AATGAATTTCTATCTGTCTCTTA------------T-----------C------cattagaaaatgaatttctatctgtctcttatcgttttcttttt
gi|55 : acaggtcgtgagttcaaccccgggtaGGAA-GTGGGTATCAG---TG----TA-AT-------------AGTGAATTTCTTTGTGCTGTATA------------T-----------gttttcttttt
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGTTTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTtagataatatttcctcaataacggctatatatactttattt
gi|57 : -CAGGTCGT---GA-----GTTCAA--C---C-GCGTTCC-AGGG-C------GGAAGTG-GGTATCtcgggtggg
gi|57 : CAGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------ATT---TTTCTTTGTGCTTTATA------------T-----------catgtaatatttttctttgtgctttatattatatatttc
gi|60 : caggtcgtgagttcaaccgcgttcGT-T-A-----TG-TTTGTTA-A-AAGA----GGT-CAT-T-GCAA------TC-TT-----T---ATGC-T--TGTCATAAA--A--TATTT-C--AC--ATG-CAG-CATG-C--CTCTGTGT-tatatatttc
gi|68 : GCAGT-T-A-----TA-TTTATTT-C-A-GA----GTT-CAT-C-GCAA------TC-TC-----G---ATGG-TA-CA----AAA--A--TATTT-T--AA--TTA-CAG-T
gi|70 : TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTG-ATCA------CACGCTGC----TATGA--
gi|72 : G-CAG-TGTG-GGAATCT-TGT-A-----TA-ATCC-TT--TTAG---ATTTATGTCAA--ATAATTGTAT---Cat
gi|74 : CGGGGCGGAT-GTGGGTATCCA---TG----TA-AT-------------AGAGA
gi|8 : cgcaggacTGC-TA-TAT-AGAAA--A--TATTT-G--AA--ATG-TCG-TGTG-T--ATCT-TGC-A-----TG-GTCC-TC--TTAA---ATATATGCCAATAATAACTGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNTA-----------G---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTG-GTCA------CACGCTTC----TAGGA--GAAT---T-G-GT---TAG-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGG-CTGAAGCGGAAGTG-GGTATC
gi|8 : GCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCcatgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctgaaATTT-T--AATAGTA-CTG-TGTC-T--ATCG-TGT-A-----TG-ATCC-TC--CTAA---ATTCACGTCAA--ATAGCTGTAT---CCCGTTTCTAA--NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNT-TTT-T--TTTTT---ACTTAC--C--T----AGATAACCGAG--------------------------TCA------CAGGCTGC----AAGGA--TATT---T-G-GT---TCT-G-CAGGTCGT---GA-----GTTCAA--CGTACACCGGGAC-AGGA-C------GGAAGTG-GGTATCgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : atatgcCAGGACGGAA-GTGGGTATC-A---TG----TA-AT-------------AGTGAATTTCTTAGCGTTTTATATTAATTAGTATTT-----------C------TTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A-atgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC
Alignments
lowQualScore : 1111111111111 5555555555555555555555555555555 11111111111111111111 111111 777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 2 333 4444 4 1111111111111 4444444444444444444444444444444 3 44 2 3 77777 3 2 2 3 8888 2 2 2 00000000000000000000 2 333333 33 22 7777 22 1 1 2 22 4 2 55555 2 2 444444444 33 2 444 3 777777777777777777777777777777777777777777777777777777777777777777777777777777 33 7777777 0 22 333 333 2 22 777777 0 4444 0 22 333 1 1 333 1 1 333 44444 22 333 1 0 22 555555 1 2
lowQualScore : . ... .... . ............. ............................... . .. . . ..... . . . . .... . . . .................... . ...... .. .. .... .. . . . .. . . ..... . . ......... .. . ... . .............................................................................. .. ....... . .. ... ... . .. ...... . .... . .. ... . . ... . . ... ..... .. ... . . .. ...... . .
lowQualScore : 2 999 7777 2 6666666666666 5555555555555555555555555555555 6 66 9 1 77777 1 9 9 1 9999 9 7 7 88888888888888888888 5 777777 11 99 8888 88 9 9 0 88 2 1 66666 2 2 999999999 44 0 777 3 222222222222222222222222222222222222222222222222222222222222222222222222222222 77 3333333 2 99 555 555 0 77 444444 1 2222 9 55 333 9 9 555 9 7 000 33333 66 333 9 2 55 555555 9 1
consensus : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCA-T--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
Reference ( family-180 ) : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCA-T--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGNNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
gi|10 : -AGGGCAATCT-A-----TGCTTTATTT-C-A-GAA---GTTGCAT-TTGCAC------TA-TT-----T---TTGCATAGTAT-ATAA--------CTT-T--GA--ATG-CAG-TGTGTT--ATCCGTGTAA-----TG-ATCA-TC--CT-A---ATTTACGTC-A--ATAA---TAT----CCA-TTCCA-T------AAACATGTGTTTNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-TAAC-------ACTTAC--G--A----AGATAGT-GAGCGGGGT---T---TGGTG-CGCTG-ATCAG-----AACAATAG----TAGGACGGA-T---T-G-GT---TCCTG-C-TGTCGCAAAGA-----AT--AA--C---C-C--GGCC-TGG------G-C--AAGTG-GGT
gi|12 : aA-AT-------------AGCGAAATT-TGCGTGCTTTATA------------TTACAAATTTTTC------TTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-A-A-GATAACTTT-CAT-T-GCGC------TATTT-----T---GTGC-TT-TATAATCAA--A--TATTT-T--AA--A-G-TAG-AATG-T--ATCT-GGT-A-----TG-A----------------------TCAA--ATAGCTA------CC--TTTCCA-TNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-A-A-GA----ATT-AAA-T-GCAA------TA-T-------------------GT-ATAA--------TTT-T--A----------------T--ATTA-TAT-A-----TG-ATCC-TC--TTAG---ATTTACATCAA--ATGATTGTAT---CTCAACTC-A-T--TTCTTAATCACCGTGTAGTGTG-CACGAG-TAG-TTAGTTGTACGCAAGAATCCCATGG------T--CTTTG---ACC-ACTAC--T----AGAGCATAGA----------C---TATTG-CACTG-GTCA------CACAATTC----TAGGT--GATT---T-G-G
gi|18 : cacA-TT-----T---TTCC-CA-TAA-ATAAA--A--TATTT-G--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TCTTTTAAAATATTTACGTCAC--ATAATTGTGT---CCCATTTCCA-T---NNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTTG---ACTTGC--C--T----AG--------GT--AGT---C---TAGCG-TGCTG-GTCA------CAT-CTGC----T
gi|19 : gaC--GGC---T---TAGCG-CCACG-TTTG------TACCCTAC----CAA-----ATA---T-GCGC---TCC-G-CAGGTCGT---GA-----GTTCAATTC---C-CCGTGTA-GAG------G-CAAAAGTG-
gi|19 : GAGGCAAAA-GTG------CA---T-----T---T-------------GGTTAATTTTTTCCTGCTCTATA------------T-----------CATATTCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGA-TA----ACT-CAT-T--CAA------TA-AT-----TCGCGTGC-CA-CA----AAA--A--TATTT-C--AA--ATGCCAG-TAT--T--ATcatttggttaattttttcctgctctatatcatattcttcacctaatggccgtttacgtttatttagataactcattcaataattcgcgtgccacaaaaatatttcaaatgccagtattat
gi|2 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtaA--A--TATTT-C--AA--ATT-CAG-TGTG-T--TTCC-TGT-ACTACATGTATCT-CC----AA---ATTTACATGAA--ATGAATGTATAATCCTATTTCCA-T--TTTCAA-TGACAGTATAACATGGCACGGCGTGG-TGAAA-ATTTCACTTTCTTGCAAACAAGTT-T--GTT-G---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTG-CTCA------GACACAGC----CAGGA--GATT---T-G-AC---TCC-G-CAGGTCAA---AA-----GCTGAA--C---T-ACGGGTA-GGG------G-CGGACGT----TATC
gi|2 : GGGGCGGAC-GT---TATCCA---TAAAATTA-AT-------------AGCG-ATTTCTTcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : aatatttcaaattcagtgtgtttcctgtactacatgtatctccaaatttacatgaaatgaatgtataatcctatttccattttcaatgacagtataacatggcacggcgtggtgaaaatttcactttcttgcaaacaagtttgttgacttgtcgagatgaataagcaatatacatataatacactgctcagacacagccaggagatttgactccgcaggtcaaaagctgaactacgggta--GATT---T-G-GT---TTC-G-CAGGTCGT---GACGTGAGTTCCA--T---C-CCAGGCC-GGG------C-CGGACCTG-AGTGTCctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : gCGGGCCGGAC-CTGAGTGTCCA---TA----CA-AT-------------AGTGAATTTCTCTGTGCTTTACATCAAAATATT--T-----------C------TTCAC-TG-AGGGCAGT---------TC-TCTATTTCA-A-G-------------T-GCAA------TG-Tcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|21 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggc--TATTT-C--AA--GTG-CAA-TGTC-C--AGCT-TGT-A-----TG-ATCA-TC--TACA---ATTAACGTTAC--ATGAT--TAA---CCCATCTCCA-T--ccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|24 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTCC-------GA--GATT---T-G-TT---TCC-G-CAGGTTGT---GA-----GTTCAA--C---C-C----TT-GGG------G-CGGAAGTG-GGTATC
gi|24 : GGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------TGAGAATTTCTTTCTGCTTTATA------------TTGGAATATC--C------TTCAG-TT-ATGGAAGT-catgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttAAA--A--TATTT-C--AA--ATG-CAG-TGTA-T--ATCT-TGT-A-----TG-ATTC-TG--TCCA---A--TGCATCAA--ATGGCCGTAT---CCCGTATTCA-T--CT---------TGTTTGGCGCG-TG-GGA-TTGCTTAGTCGTTC-------TCGC---TCAGTT-T--TAGTG---GCTT------------------TC-AGC--GGT---C---TAACG-TTGTG-GTCA------CATGCTGgcgacattcaacttcagggatacttaaaagtccagact
gi|26 : ---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTG-GCCG------CGGGCTTC----TAGGA--GGTT---T-G-AA---TCC-A-CAGGTCAT---GA-----GTTCAA--C---C-ACGGGTG-GGG------G-TTGAAGCT-GGTATCaaga
gi|26 : cttGGGGTTGAA-GCTGGTATCCA---TA----TA--T-------------AGTAAATCTCTCAGTGCTT--TA------------C-----------C------TTTAC-catatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|27 : cttatttgcccataggtgttcgaaaagtctagcttgctggccgcgggcttctaggaggtttgaatccacaggtcatgagttcaaccacgggtgAACG-CGCTG-ATCA------CACACTGCATGCTGGGA--GATT---TTG-AT---TCT-G-CAGGTCGT---GA-----G-TCAA--C---C-C--GTCCTGGG------A-CGGAAGTG-GGTATaatgaacgtt
gi|27 : GGGACGGAA-GTGGGTATTCG---TG----GA-ATTGTAAATTAGAACAGTGAATTTCCTTGTGCTT--TA------------T-----------C------CCCAC-Ttcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|32 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctAC-TA-AGGGCAAT-T-A-----TG-TTAACT--A-C-GA----GTT-AAT-T-GCAA------TA------------GTGC-T--T-T-ATAAA--A--TATTT-TG-AA--ATG-CAGGTGCA-T--ATCT-TGT-A-----TG-ATCC-TC--TTAG---ATTTATGTCAA--ATAATTGTAT---CCCgtttgtgatata
gi|33 : A------CACCCTGC----TAGGA--GATT---T-A-GT---TCT-G-CAGGTAGC---GA-----GTTCAA--C---T-CCGGGCA-GGG------A-TAGATGTG-GGTACC
gi|33 : aGGGATAGAT-GTGGGTACCCA---TA----TG-AT-------------AGTGAATTTCTCTGTGCTTTATA------------T-----------catatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|34 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcaGAGT--GGT---A---TAGAAACGCTG-ATCA------TGAAATGC----TAGAT--TATTAGTT-A-GA---TCT-AACGGGTTGT---AA-----GTTCAA--C---C-CTTGGCC-GGG------GACGGAAGTG-GATATacatgtgctttta
gi|35 : GA--GGTT---T-G-GT---TCC-G-CAGGTCAT---GA-----ATTCAA--C---C-GCTTGCC-AGA------G-TGGAA-TGTGGTATCtcaccgagcttccacca
gi|35 : acaCAGAGTGGAATGTGG-TATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------Tcatgtaatagtgaatttctttgtgctttatatctattttttttttacctag
gi|38 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcTT-A-A-GA----GTT-CATGT-GCAA------TA-TG-----T---GTGC-TA-TAT-CTAAA--AAGTATTT-G---A--ATG-CAG-TGTC-T--ATAT-TGT-A-----C--ATCT-TC--TTGG---GTTTACGCC-A--ATAACTGTAT---TCCATTTCCA-attttttttttacctag
gi|39 : TCG-AAGCAAGTT----CTTCG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTG-GTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTC
gi|4 : aattttattttCGGAGAGGAA-GCGTTTATCCG---TG----TA-AT-------------AGTGAATTCCTTTGTGCTTTAT-------------T-----------C------TGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-A-A-AA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAC-ATAAA--A--TATTT-G--AA--ACG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--CTAA---ATTTACGTCAA--ATATATGTAT---CCCATTTCCA-T--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT--CTTTG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTA-GTCA------CACACTGC----TAGGA--GATT---T-G-GA---TCC-C-CACATCGT---GA-----GTTTAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATCgggtg
gi|40 : gAGT-T-A-----TG-TTTATTC-A-G-GA----GTT-CGT-A-GTGAC-----TC-TTACAAAT---GTGT-TA-TG-----AA--A--TATAT-G--AA--ATC-TGG-AGTG-T--ATTA-CGT-A-----TG-ATTC-TC--TTAA---AT
gi|41 : GAA--GAAT---T-G-GT---TTC-G-TAGGTCGT---GA-----GTTTAA--C---C-TCGGGTA-TGA------G-AGGAAGTG-GGTATCggctgtctcattt
gi|41 : GGAA-GTGGGTATCCAAATTG----TATAA-------------AGTGAATTTC-CTGTGTTTTATA------------caaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|43 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtatgaga-AGGGCAAC-T-ACTGTATG-TTTATTT-A-A-GA----GTT-CAT-T-GCAG------TC-TT-----T---GTGC-TT-TAT-AAAAG--A--TATCTAG--GA--ATG-CAG-AATG-C--AC-----T-G-----TG-ATCCATC--CTAA---ACTTagtaactacatg
gi|44 : A----GTT-GAT-T-GCAA------GA-TT-----T---GTGC-TT-TAT-ATAAACAA--TGTTT-T--AA--ATT-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TT------TTTATGTCAA--
gi|46 : atattcacttcCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-------------------CGCTGC----TTGGG--GGTT---T-G-CTCTGTAC-A-TAGGTAGC---GA-----GTTCAA--C---C-CCAGGCT-GGG------A-TGGAGGtttcc
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTG-GTTATACATGTACATTGC----TAGCA--GATT---G-G-GT---TCG-G-CAGGTCGT---GA-----------------------GCC-GGG------G-CGGAAATG-TGTATg
gi|49 : T-T-GCAA------T---------T---GTTT-CG-AAT-ATAGA-----TATTT-AGTAC--ATG-TA--TATG-T--ATAT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACATCAA--ATTACTGTAT---CCC-TTTCCttat
gi|5 : GGCGGAA-GTGCGTATCTA---TG----CC-AT-------------AGTGAATTTCTTTGTGCTTTATATTAAAATATT--T-----------C------TTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-A-C-TA----GTT-CAT-T-GCAATGCTAGTA-TT-----T---GTGC-T--T-T-ATAAA--A--TATTT-C--AA--ATG-CAG-ACAG-T--ATCA-TGT-A-----TG-ATCC-TC--T----------------A--ATGACTGTAT---CCCATTTCCA----ANNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTAG---ACATGC--C--T----AGA--GTCGATC--GGT---C---TAGCG-AGCTG-GTCA------CGCGCTGC----TTGGA--GATT---T-G-GT---TCT-A-CAGGACGC---GA-----GTTCAA--C---C-CCAGGCA-AGG------G-CAGAAGT
gi|51 : GT---C---TTGGG-CACTA-CTCA------GATGCTGT----CAGTA--GGTT---T-G-GT---CAC-G-CAGACCGT---GA-----GTGCAA--C---C-CCGGACT--GC------G-CGGAAGTG-GAT
gi|52 : CC-G-C---TCGT---GA-----GGTCAA--C---C-ACAGGCC-GTG------G-CAGAAGTG-GGTGTCgcccactc
gi|52 : ctagaCGTGGCAGAA-GTGGGTGTCTA---TA----GA-AT-------------AGTGAATAACTTCGTGCTTTAtatagaatagtgaataacttcgtgctttagcaatcaacatt
gi|54 : ctagaccgctcgtgaggtcaaccacaggc-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGTA-GAG------G-AGGAAATG-GG-ATCgcaatcaacatt
gi|54 : aGAGGAGGAA-ATGGG-ATCCA---T-----TAGAA-------------AATGAATTTCTATCTGTCTCTTA------------T-----------C------cattagaaaatgaatttctatctgtctcttatcgttttcttttt
gi|55 : acaggtcgtgagttcaaccccgggtaGGAA-GTGGGTATCAG---TG----TA-AT-------------AGTGAATTTCTTTGTGCTGTATA------------T-----------gttttcttttt
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGTTTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTtagataatatttcctcaataacggctatatatactttattt
gi|57 : -CAGGTCGT---GA-----GTTCAA--C---C-GCGTTCC-AGG------G-CGGAAGTG-GGTATCtcgggtggg
gi|57 : CAGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------ATT---TTTCTTTGTGCTTTATA------------T-----------catgtaatatttttctttgtgctttatattatatatttc
gi|60 : caggtcgtgagttcaaccgcgttcGT-T-A-----TG-TTTGTTA-A-AAGA----GGT-CAT-T-GCAA------TC-TT-----T---ATGC-T--TGTCATAAA--A--TATTT-C--AC--ATG-CAG-CATG-C--CTCTGTGT-tatatatttc
gi|68 : GCAGT-T-A-----TA-TTTATTT-C-A-GA----GTT-CAT-C-GCAA------TC-TC-----G---ATGG-TA-CA----AAA--A--TATTT-T--AA--TTA-CAG-T
gi|70 : TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTG-ATCA------CACGCTGC----TATGA--
gi|72 : G-CAG-TGTG-GGAATCT-TGT-A-----TA-ATCC-TT--TTAG---ATTTATGTCAA--ATAATTGTAT---Cat
gi|74 : CGGGGCGGAT-GTGGGTATCCA---TG----TA-AT-------------AGAGA
gi|8 : cgcaggacTGC-TA-TAT-AGAAA--A--TATTT-G--AA--ATG-TCG-TGTG-T--ATCT-TGC-A-----TG-GTCC-TC--TTAA---ATATATGCCAATAATAACTGTAT---CCCATTTCCA-T--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNTAG--------------ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTG-GTCA------CACGCTTC----TAGGA--GAAT---T-G-GT---TAG-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGGCTGAAG-CGGAAGTG-GGTATC
gi|8 : GCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCcatgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctgaaATTT-T--AATAGTA-CTG-TGTC-T--ATCG-TGT-A-----TG-ATCC-TC--CTAA---ATTCACGTCAA--ATAGCTGTAT---CCCGTTTCTAAN--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNTT--TT-T--TTTTT---ACTTAC--C--T----AGATAACCGAG--------------------------TCA------CAGGCTGC----AAGGA--TATT---T-G-GT---TCT-G-CAGGTCGT---GA-----GTTCAA--CGTACACCGGGAC-AGG------A-CGGAAGTG-GGTATCgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : atatgcCAGGACGGAA-GTGGGTATC-A---TG----TA-AT-------------AGTGAATTTCTTAGCGTTTTATATTAATTAGTATTT-----------C------TTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A-atgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC
Alignments
lowQualScore : 1111111111111 5555555555555555555555555555555 11111111111111111111 111111 777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 2 333 4444 4 1111111111111 4444444444444444444444444444444 3 44 2 3 77777 3 2 2 3 8888 2 2 2 00000000000000000000 2 333333 33 22 7777 22 1 1 2 22 4 2 55555 2 2 444444444 33 2 444 666666666666666666666666666666666666666666666666666666666666666666666666666666 33 7777777 0 22 333 333 2 22 777777 0 4444 0 22 333 1 1 333 1 1 333 44444 22 333 1 0 22 555555 1 2
lowQualScore : . ... .... . ............. ............................... . .. . . ..... . . . . .... . . . .................... . ...... .. .. .... .. . . . .. . . ..... . . ......... .. . ... .............................................................................. .. ....... . .. ... ... . .. ...... . .... . .. ... . . ... . . ... ..... .. ... . . .. ...... . .
lowQualScore : 2 999 7777 2 6666666666666 5555555555555555555555555555555 6 66 9 1 77777 1 9 9 1 9999 9 7 7 88888888888888888888 5 777777 11 99 8888 88 9 9 0 88 2 1 66666 2 2 999999999 44 0 777 999999999999999999999999999999999999999999999999999999999999999999999999999999 77 3333333 2 99 555 555 0 77 444444 1 2222 9 55 333 9 9 555 9 7 000 33333 66 333 9 2 55 555555 9 1
consensus : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
Reference ( family-180 ) : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
gi|10 : -AGGGCAATCT-A-----TGCTTTATTT-C-A-GAA---GTTGCAT-TTGCAC------TA-TT-----T---TTGCATAGTAT-ATAA--------CTT-T--GA--ATG-CAG-TGTGTT--ATCCGTGTAA-----TG-ATCA-TC--CT-A---ATTTACGTC-A--ATAA---TAT----CCA-TTCCAT------AAACATGTGTTTNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-TAAC-------ACTTAC--G--A----AGATAGT-GAGCGGGGT---T---TGGTG-CGCTG-ATCAG-----AACAATAG----TAGGACGGA-T---T-G-GT---TCCTG-C-TGTCGCAAAGA-----AT--AA--C---C-C--GGCC-TGG------G-C--AAGTG-GGT
gi|12 : aA-AT-------------AGCGAAATT-TGCGTGCTTTATA------------TTACAAATTTTTC------TTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-A-A-GATAACTTT-CAT-T-GCGC------TATTT-----T---GTGC-TT-TATAATCAA--A--TATTT-T--AA--A-G-TAG-AATG-T--ATCT-GGT-A-----TG-A----------------------TCAA--ATAGCTA------CC--TTTCCATNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-A-A-GA----ATT-AAA-T-GCAA------TA-T-------------------GT-ATAA--------TTT-T--A----------------T--ATTA-TAT-A-----TG-ATCC-TC--TTAG---ATTTACATCAA--ATGATTGTAT---CTCAACTC-AT--TTCTTAATCACCGTGTAGTGTG-CACGAG-TAG-TTAGTTGTACGCAAGAATCCCATG---GT-----CTTTG---ACC-ACTAC--T----AGAGCATAGA----------C---TATTG-CACTG-GTCA------CACAATTC----TAGGT--GATT---T-G-G
gi|18 : cacA-TT-----T---TTCC-CA-TAA-ATAAA--A--TATTT-G--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TCTTTTAAAATATTTACGTCAC--ATAATTGTGT---CCCATTTCCAT---NNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTTG---ACTTGC--C--T----AG--------GT--AGT---C---TAGCG-TGCTG-GTCA------CAT-CTGC----T
gi|19 : gaC--GGC---T---TAGCG-CCACG-TTTG------TACCCTAC----CAA-----ATA---T-GCGC---TCC-G-CAGGTCGT---GA-----GTTCAATTC---C-CCGTGTA-GAG------G-CAAAAGTG-
gi|19 : GAGGCAAAA-GTG------CA---T-----T---T-------------GGTTAATTTTTTCCTGCTCTATA------------T-----------CATATTCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGA-TA----ACT-CAT-T--CAA------TA-AT-----TCGCGTGC-CA-CA----AAA--A--TATTT-C--AA--ATGCCAG-TAT--T--ATcatttggttaattttttcctgctctatatcatattcttcacctaatggccgtttacgtttatttagataactcattcaataattcgcgtgccacaaaaatatttcaaatgccagtattat
gi|2 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtaA--A--TATTT-C--AA--ATT-CAG-TGTG-T--TTCC-TGT-ACTACATGTATCT-CC----AA---ATTTACATGAA--ATGAATGTATAATCCTATTTCCAT--TTTCAA-TGACAGTATAACATGGCACGGCGTGG-TGAAA-ATTTCACTTTCTTGCAAACAAGTT-T--GTT-G---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTG-CTCA------GACACAGC----CAGGA--GATT---T-G-AC---TCC-G-CAGGTCAA---AA-----GCTGAA--C---T-ACGGGTA-GGG------G-CGGACGT----TATC
gi|2 : GGGGCGGAC-GT---TATCCA---TAAAATTA-AT-------------AGCG-ATTTCTTcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : aatatttcaaattcagtgtgtttcctgtactacatgtatctccaaatttacatgaaatgaatgtataatcctatttccattttcaatgacagtataacatggcacggcgtggtgaaaatttcactttcttgcaaacaagtttgttgacttgtcgagatgaataagcaatatacatataatacactgctcagacacagccaggagatttgactccgcaggtcaaaagctgaactacgggta--GATT---T-G-GT---TTC-G-CAGGTCGT---GACGTGAGTTCCA--T---C-CCAGGCC-GGG------C-CGGACCTG-AGTGTCctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : gCGGGCCGGAC-CTGAGTGTCCA---TA----CA-AT-------------AGTGAATTTCTCTGTGCTTTACATCAAAATATT--T-----------C------TTCAC-TG-AGGGCAGT---------TC-TCTATTTCA-A-G-------------T-GCAA------TG-Tcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|21 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggc--TATTT-C--AA--GTG-CAA-TGTC-C--AGCT-TGT-A-----TG-ATCA-TC--TACA---ATTAACGTTAC--ATGAT--TAA---CCCATCTCCAT--ccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|24 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTCC-------GA--GATT---T-G-TT---TCC-G-CAGGTTGT---GA-----GTTCAA--C---C-C----TT-GGG------G-CGGAAGTG-GGTATC
gi|24 : GGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------TGAGAATTTCTTTCTGCTTTATA------------TTGGAATATC--C------TTCAG-TT-ATGGAAGT-catgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttAAA--A--TATTT-C--AA--ATG-CAG-TGTA-T--ATCT-TGT-A-----TG-ATTC-TG--TCCA---A--TGCATCAA--ATGGCCGTAT---CCCGTATTCAT--CT---------TGTTTGGCGCG-TG-GGA-TTGCTTAGTCGTTC-------TCGC---TCAGTT-T--TAGTG---GCTT------------------TC-AGC--GGT---C---TAACG-TTGTG-GTCA------CATGCTGgcgacattcaacttcagggatacttaaaagtccagact
gi|26 : ---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTG-GCCG------CGGGCTTC----TAGGA--GGTT---T-G-AA---TCC-A-CAGGTCAT---GA-----GTTCAA--C---C-ACGGGTG-GGG------G-TTGAAGCT-GGTATCaaga
gi|26 : cttGGGGTTGAA-GCTGGTATCCA---TA----TA--T-------------AGTAAATCTCTCAGTGCTT--TA------------C-----------C------TTTAC-catatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|27 : cttatttgcccataggtgttcgaaaagtctagcttgctggccgcgggcttctaggaggtttgaatccacaggtcatgagttcaaccacgggtgAACG-CGCTG-ATCA------CACACTGCATGCTGGGA--GATT---TTG-AT---TCT-G-CAGGTCGT---GA-----G-TCAA--C---C-C--GTCCTGGG------A-CGGAAGTG-GGTATaatgaacgtt
gi|27 : GGGACGGAA-GTGGGTATTCG---TG----GA-ATTGTAAATTAGAACAGTGAATTTCCTTGTGCTT--TA------------T-----------C------CCCAC-Ttcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|32 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctAC-TA-AGGGCAAT-T-A-----TG-TTAACT--A-C-GA----GTT-AAT-T-GCAA------TA------------GTGC-T--T-T-ATAAA--A--TATTT-TG-AA--ATG-CAGGTGCA-T--ATCT-TGT-A-----TG-ATCC-TC--TTAG---ATTTATGTCAA--ATAATTGTAT---CCCgtttgtgatata
gi|33 : A------CACCCTGC----TAGGA--GATT---T-A-GT---TCT-G-CAGGTAGC---GA-----GTTCAA--C---T-CCGGGCA-GGG------A-TAGATGTG-GGTACC
gi|33 : aGGGATAGAT-GTGGGTACCCA---TA----TG-AT-------------AGTGAATTTCTCTGTGCTTTATA------------T-----------catatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|34 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcaGAGT--GGT---A---TAGAAACGCTG-ATCA------TGAAATGC----TAGAT--TATTAGTT-A-GA---TCT-AACGGGTTGT---AA-----GTTCAA--C---C-CTTGGCC-GGG------GACGGAAGTG-GATATacatgtgctttta
gi|35 : GA--GGTT---T-G-GT---TCC-G-CAGGTCAT---GA-----ATTCAA--C---C-GCTTGCC-AGA------G-TGGAA-TGTGGTATCtcaccgagcttccacca
gi|35 : acaCAGAGTGGAATGTGG-TATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------Tcatgtaatagtgaatttctttgtgctttatatctattttttttttacctag
gi|38 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcTT-A-A-GA----GTT-CATGT-GCAA------TA-TG-----T---GTGC-TA-TAT-CTAAA--AAGTATTT-G---A--ATG-CAG-TGTC-T--ATAT-TGT-A-----C--ATCT-TC--TTGG---GTTTACGCC-A--ATAACTGTAT---TCCATTTCCAattttttttttacctag
gi|39 : TCG-AAGCAAGTT----CTTCG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTG-GTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTC
gi|4 : aattttattttCGGAGAGGAA-GCGTTTATCCG---TG----TA-AT-------------AGTGAATTCCTTTGTGCTTTAT-------------T-----------C------TGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-A-A-AA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAC-ATAAA--A--TATTT-G--AA--ACG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--CTAA---ATTTACGTCAA--ATATATGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT--CTTTG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTA-GTCA------CACACTGC----TAGGA--GATT---T-G-GA---TCC-C-CACATCGT---GA-----GTTTAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATCgggtg
gi|40 : gAGT-T-A-----TG-TTTATTC-A-G-GA----GTT-CGT-A-GTGAC-----TC-TTACAAAT---GTGT-TA-TG-----AA--A--TATAT-G--AA--ATC-TGG-AGTG-T--ATTA-CGT-A-----TG-ATTC-TC--TTAA---AT
gi|41 : GAA--GAAT---T-G-GT---TTC-G-TAGGTCGT---GA-----GTTTAA--C---C-TCGGGTA-TGA------G-AGGAAGTG-GGTATCggctgtctcattt
gi|41 : GGAA-GTGGGTATCCAAATTG----TATAA-------------AGTGAATTTC-CTGTGTTTTATA------------caaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|43 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtatgaga-AGGGCAAC-T-ACTGTATG-TTTATTT-A-A-GA----GTT-CAT-T-GCAG------TC-TT-----T---GTGC-TT-TAT-AAAAG--A--TATCTAG--GA--ATG-CAG-AATG-C--AC-----T-G-----TG-ATCCATC--CTAA---ACTTagtaactacatg
gi|44 : A----GTT-GAT-T-GCAA------GA-TT-----T---GTGC-TT-TAT-ATAAACAA--TGTTT-T--AA--ATT-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TT------TTTATGTCAA--
gi|46 : atattcacttcCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-------------------CGCTGC----TTGGG--GGTT---T-G-CTCTGTAC-A-TAGGTAGC---GA-----GTTCAA--C---C-CCAGGCT-GGG------A-TGGAGGtttcc
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTG-GTTATACATGTACATTGC----TAGCA--GATT---G-G-GT---TCG-G-CAGGTCGT---GA-----------------------GCC-GGG------G-CGGAAATG-TGTATg
gi|49 : T-T-GCAA------T---------T---GTTT-CG-AAT-ATAGA-----TATTT-AGTAC--ATG-TA--TATG-T--ATAT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACATCAA--ATTACTGTAT---CCC-TTTCCttat
gi|5 : GGCGGAA-GTGCGTATCTA---TG----CC-AT-------------AGTGAATTTCTTTGTGCTTTATATTAAAATATT--T-----------C------TTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-A-C-TA----GTT-CAT-T-GCAATGCTAGTA-TT-----T---GTGC-T--T-T-ATAAA--A--TATTT-C--AA--ATG-CAG-ACAG-T--ATCA-TGT-A-----TG-ATCC-TC--T----------------A--ATGACTGTAT---CCCATTTCCA---ANNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTAG---ACATGC--C--T----AGA--GTCGATC--GGT---C---TAGCG-AGCTG-GTCA------CGCGCTGC----TTGGA--GATT---T-G-GT---TCT-A-CAGGACGC---GA-----GTTCAA--C---C-CCAGGCA-AGG------G-CAGAAGT
gi|51 : GT---C---TTGGG-CACTA-CTCA------GATGCTGT----CAGTA--GGTT---T-G-GT---CAC-G-CAGACCGT---GA-----GTGCAA--C---C-CCGGACT--GC------G-CGGAAGTG-GAT
gi|52 : CC-G-C---TCGT---GA-----GGTCAA--C---C-ACAGGCC-GTG------G-CAGAAGTG-GGTGTCgcccactc
gi|52 : ctagaCGTGGCAGAA-GTGGGTGTCTA---TA----GA-AT-------------AGTGAATAACTTCGTGCTTTAtatagaatagtgaataacttcgtgctttagcaatcaacatt
gi|54 : ctagaccgctcgtgaggtcaaccacaggc-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGTA-GAG------G-AGGAAATG-GG-ATCgcaatcaacatt
gi|54 : aGAGGAGGAA-ATGGG-ATCCA---T-----TAGAA-------------AATGAATTTCTATCTGTCTCTTA------------T-----------C------cattagaaaatgaatttctatctgtctcttatcgttttcttttt
gi|55 : acaggtcgtgagttcaaccccgggtaGGAA-GTGGGTATCAG---TG----TA-AT-------------AGTGAATTTCTTTGTGCTGTATA------------T-----------gttttcttttt
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGTTTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTtagataatatttcctcaataacggctatatatactttattt
gi|57 : -CAGGTCGT---GA-----GTTCAA--C---C-GCGTTCC-AGG------G-CGGAAGTG-GGTATCtcgggtggg
gi|57 : CAGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------ATT---TTTCTTTGTGCTTTATA------------T-----------catgtaatatttttctttgtgctttatattatatatttc
gi|60 : caggtcgtgagttcaaccgcgttcGT-T-A-----TG-TTTGTTA-A-AAGA----GGT-CAT-T-GCAA------TC-TT-----T---ATGC-T--TGTCATAAA--A--TATTT-C--AC--ATG-CAG-CATG-C--CTCTGTGT-tatatatttc
gi|68 : GCAGT-T-A-----TA-TTTATTT-C-A-GA----GTT-CAT-C-GCAA------TC-TC-----G---ATGG-TA-CA----AAA--A--TATTT-T--AA--TTA-CAG-T
gi|70 : TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTG-ATCA------CACGCTGC----TATGA--
gi|72 : G-CAG-TGTG-GGAATCT-TGT-A-----TA-ATCC-TT--TTAG---ATTTATGTCAA--ATAATTGTAT---Cat
gi|74 : CGGGGCGGAT-GTGGGTATCCA---TG----TA-AT-------------AGAGA
gi|8 : cgcaggacTGC-TA-TAT-AGAAA--A--TATTT-G--AA--ATG-TCG-TGTG-T--ATCT-TGC-A-----TG-GTCC-TC--TTAA---ATATATGCCAATAATAACTGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNTAG--------------ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTG-GTCA------CACGCTTC----TAGGA--GAAT---T-G-GT---TAG-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGGCTGAAG-CGGAAGTG-GGTATC
gi|8 : GCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCcatgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctgaaATTT-T--AATAGTA-CTG-TGTC-T--ATCG-TGT-A-----TG-ATCC-TC--CTAA---ATTCACGTCAA--ATAGCTGTAT---CCCGTTTCTAA--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNT-TTT-T--TTTTT---ACTTAC--C--T----AGATAACCGAG--------------------------TCA------CAGGCTGC----AAGGA--TATT---T-G-GT---TCT-G-CAGGTCGT---GA-----GTTCAA--CGTACACCGGGAC-AGG------A-CGGAAGTG-GGTATCgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : atatgcCAGGACGGAA-GTGGGTATC-A---TG----TA-AT-------------AGTGAATTTCTTAGCGTTTTATATTAATTAGTATTT-----------C------TTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A-atgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC
Alignments
lowQualScore : 1111111111111 5555555555555555555555555555555 11111111111111111111 111111 777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 2 333 4444 4 1111111111111 4444444444444444444444444444444 3 44 2 3 77777 3 2 2 3 8888 2 2 2 00000000000000000000 2 333333 33 22 7777 22 1 1 2 22 4 2 55555 2 2 444444444 33 2 444 666666666666666666666666666666666666666666666666666666666666666666666666666666 33 7777777 0 22 333 333 2 22 777777 0 4444 0 22 333 1 1 333 1 1 333 44444 22 333 1 0 22 555555 1 2
lowQualScore : . ... .... . ............. ............................... . .. . . ..... . . . . .... . . . .................... . ...... .. .. .... .. . . . .. . . ..... . . ......... .. . ... .............................................................................. .. ....... . .. ... ... . .. ...... . .... . .. ... . . ... . . ... ..... .. ... . . .. ...... . .
lowQualScore : 2 999 7777 2 6666666666666 5555555555555555555555555555555 6 66 9 1 77777 1 9 9 1 9999 9 7 7 88888888888888888888 5 777777 11 99 8888 88 9 9 0 88 2 1 66666 2 2 999999999 44 0 777 999999999999999999999999999999999999999999999999999999999999999999999999999999 77 3333333 2 99 555 555 0 77 444444 1 2222 9 55 333 9 9 555 9 7 000 33333 66 333 9 2 55 555555 9 1
consensus : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
Reference ( family-180 ) : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
gi|10 : -AGGGCAATCT-A-----TGCTTTATTT-C-A-GAA---GTTGCAT-TTGCAC------TA-TT-----T---TTGCATAGTAT-ATAA--------CTT-T--GA--ATG-CAG-TGTGTT--ATCCGTGTAA-----TG-ATCA-TC--CT-A---ATTTACGTC-A--ATAA---TAT----CCA-TTCCAT------AAACATGTGTTTNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-TAAC-------ACTTAC--G--A----AGATAGT-GAGCGGGGT---T---TGGTG-CGCTG-ATCAG-----AACAATAG----TAGGACGGA-T---T-G-GT---TCCTG-C-TGTCGCAAAGA-----AT--AA--C---C-C--GGCC-TGG------G-C--AAGTG-GGT
gi|12 : aA-AT-------------AGCGAAATT-TGCGTGCTTTATA------------TTACAAATTTTTC------TTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-A-A-GATAACTTT-CAT-T-GCGC------TATTT-----T---GTGC-TT-TATAATCAA--A--TATTT-T--AA--A-G-TAG-AATG-T--ATCT-GGT-A-----TG-A----------------------TCAA--ATAGCTA------CC--TTTCCATNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-A-A-GA----ATT-AAA-T-GCAA------TA-T-------------------GT-ATAA--------TTT-T--A----------------T--ATTA-TAT-A-----TG-ATCC-TC--TTAG---ATTTACATCAA--ATGATTGTAT---CTCAACTC-AT--TTCTTAATCACCGTGTAGTGTG-CACGAG-TAG-TTAGTTGTACGCAAGAATCCCATG---GT-----CTTTG---ACC-ACTAC--T----AGAGCATAGA----------C---TATTG-CACTG-GTCA------CACAATTC----TAGGT--GATT---T-G-G
gi|18 : cacA-TT-----T---TTCC-CA-TAA-ATAAA--A--TATTT-G--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TCTTTTAAAATATTTACGTCAC--ATAATTGTGT---CCCATTTCCAT---NNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTTG---ACTTGC--C--T----AG--------GT--AGT---C---TAGCG-TGCTG-GTCA------CAT-CTGC----T
gi|19 : gaC--GGC---T---TAGCG-CCACG-TTTG------TACCCTAC----CAA-----ATA---T-GCGC---TCC-G-CAGGTCGT---GA-----GTTCAATTC---C-CCGTGTA-GAG------G-CAAAAGTG-
gi|19 : GAGGCAAAA-GTG------CA---T-----T---T-------------GGTTAATTTTTTCCTGCTCTATA------------T-----------CATATTCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGA-TA----ACT-CAT-T--CAA------TA-AT-----TCGCGTGC-CA-CA----AAA--A--TATTT-C--AA--ATGCCAG-TAT--T--ATcatttggttaattttttcctgctctatatcatattcttcacctaatggccgtttacgtttatttagataactcattcaataattcgcgtgccacaaaaatatttcaaatgccagtattat
gi|2 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtaA--A--TATTT-C--AA--ATT-CAG-TGTG-T--TTCC-TGT-ACTACATGTATCT-CC----AA---ATTTACATGAA--ATGAATGTATAATCCTATTTCCAT--TTTCAA-TGACAGTATAACATGGCACGGCGTGG-TGAAA-ATTTCACTTTCTTGCAAACAAGTT-T--GTT-G---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTG-CTCA------GACACAGC----CAGGA--GATT---T-G-AC---TCC-G-CAGGTCAA---AA-----GCTGAA--C---T-ACGGGTA-GGG------G-CGGACGT----TATC
gi|2 : GGGGCGGAC-GT---TATCCA---TAAAATTA-AT-------------AGCG-ATTTCTTcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : aatatttcaaattcagtgtgtttcctgtactacatgtatctccaaatttacatgaaatgaatgtataatcctatttccattttcaatgacagtataacatggcacggcgtggtgaaaatttcactttcttgcaaacaagtttgttgacttgtcgagatgaataagcaatatacatataatacactgctcagacacagccaggagatttgactccgcaggtcaaaagctgaactacgggta--GATT---T-G-GT---TTC-G-CAGGTCGT---GACGTGAGTTCCA--T---C-CCAGGCC-GGG------C-CGGACCTG-AGTGTCctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : gCGGGCCGGAC-CTGAGTGTCCA---TA----CA-AT-------------AGTGAATTTCTCTGTGCTTTACATCAAAATATT--T-----------C------TTCAC-TG-AGGGCAGT---------TC-TCTATTTCA-A-G-------------T-GCAA------TG-Tcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|21 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggc--TATTT-C--AA--GTG-CAA-TGTC-C--AGCT-TGT-A-----TG-ATCA-TC--TACA---ATTAACGTTAC--ATGAT--TAA---CCCATCTCCAT--ccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|24 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTCC-------GA--GATT---T-G-TT---TCC-G-CAGGTTGT---GA-----GTTCAA--C---C-C----TT-GGG------G-CGGAAGTG-GGTATC
gi|24 : GGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------TGAGAATTTCTTTCTGCTTTATA------------TTGGAATATC--C------TTCAG-TT-ATGGAAGT-catgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttAAA--A--TATTT-C--AA--ATG-CAG-TGTA-T--ATCT-TGT-A-----TG-ATTC-TG--TCCA---A--TGCATCAA--ATGGCCGTAT---CCCGTATTCAT--CT---------TGTTTGGCGCG-TG-GGA-TTGCTTAGTCGTTC-------TCGC---TCAGTT-T--TAGTG---GCTT------------------TC-AGC--GGT---C---TAACG-TTGTG-GTCA------CATGCTGgcgacattcaacttcagggatacttaaaagtccagact
gi|26 : ---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTG-GCCG------CGGGCTTC----TAGGA--GGTT---T-G-AA---TCC-A-CAGGTCAT---GA-----GTTCAA--C---C-ACGGGTG-GGG------G-TTGAAGCT-GGTATCaaga
gi|26 : cttGGGGTTGAA-GCTGGTATCCA---TA----TA--T-------------AGTAAATCTCTCAGTGCTT--TA------------C-----------C------TTTAC-catatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|27 : cttatttgcccataggtgttcgaaaagtctagcttgctggccgcgggcttctaggaggtttgaatccacaggtcatgagttcaaccacgggtgAACG-CGCTG-ATCA------CACACTGCATGCTGGGA--GATT---TTG-AT---TCT-G-CAGGTCGT---GA-----G-TCAA--C---C-C--GTCCTGGG------A-CGGAAGTG-GGTATaatgaacgtt
gi|27 : GGGACGGAA-GTGGGTATTCG---TG----GA-ATTGTAAATTAGAACAGTGAATTTCCTTGTGCTT--TA------------T-----------C------CCCAC-Ttcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|32 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctAC-TA-AGGGCAAT-T-A-----TG-TTAACT--A-C-GA----GTT-AAT-T-GCAA------TA------------GTGC-T--T-T-ATAAA--A--TATTT-TG-AA--ATG-CAGGTGCA-T--ATCT-TGT-A-----TG-ATCC-TC--TTAG---ATTTATGTCAA--ATAATTGTAT---CCCgtttgtgatata
gi|33 : A------CACCCTGC----TAGGA--GATT---T-A-GT---TCT-G-CAGGTAGC---GA-----GTTCAA--C---T-CCGGGCA-GGG------A-TAGATGTG-GGTACC
gi|33 : aGGGATAGAT-GTGGGTACCCA---TA----TG-AT-------------AGTGAATTTCTCTGTGCTTTATA------------T-----------catatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|34 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcaGAGT--GGT---A---TAGAAACGCTG-ATCA------TGAAATGC----TAGAT--TATTAGTT-A-GA---TCT-AACGGGTTGT---AA-----GTTCAA--C---C-CTTGGCC-GGG------GACGGAAGTG-GATATacatgtgctttta
gi|35 : GA--GGTT---T-G-GT---TCC-G-CAGGTCAT---GA-----ATTCAA--C---C-GCTTGCC-AGA------G-TGGAA-TGTGGTATCtcaccgagcttccacca
gi|35 : acaCAGAGTGGAATGTGG-TATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------Tcatgtaatagtgaatttctttgtgctttatatctattttttttttacctag
gi|38 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcTT-A-A-GA----GTT-CATGT-GCAA------TA-TG-----T---GTGC-TA-TAT-CTAAA--AAGTATTT-G---A--ATG-CAG-TGTC-T--ATAT-TGT-A-----C--ATCT-TC--TTGG---GTTTACGCC-A--ATAACTGTAT---TCCATTTCCAattttttttttacctag
gi|39 : TCG-AAGCAAGTT----CTTCG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTG-GTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTC
gi|4 : aattttattttCGGAGAGGAA-GCGTTTATCCG---TG----TA-AT-------------AGTGAATTCCTTTGTGCTTTAT-------------T-----------C------TGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-A-A-AA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAC-ATAAA--A--TATTT-G--AA--ACG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--CTAA---ATTTACGTCAA--ATATATGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT--CTTTG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTA-GTCA------CACACTGC----TAGGA--GATT---T-G-GA---TCC-C-CACATCGT---GA-----GTTTAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATCgggtg
gi|40 : gAGT-T-A-----TG-TTTATTC-A-G-GA----GTT-CGT-A-GTGAC-----TC-TTACAAAT---GTGT-TA-TG-----AA--A--TATAT-G--AA--ATC-TGG-AGTG-T--ATTA-CGT-A-----TG-ATTC-TC--TTAA---AT
gi|41 : GAA--GAAT---T-G-GT---TTC-G-TAGGTCGT---GA-----GTTTAA--C---C-TCGGGTA-TGA------G-AGGAAGTG-GGTATCggctgtctcattt
gi|41 : GGAA-GTGGGTATCCAAATTG----TATAA-------------AGTGAATTTC-CTGTGTTTTATA------------caaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|43 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtatgaga-AGGGCAAC-T-ACTGTATG-TTTATTT-A-A-GA----GTT-CAT-T-GCAG------TC-TT-----T---GTGC-TT-TAT-AAAAG--A--TATCTAG--GA--ATG-CAG-AATG-C--AC-----T-G-----TG-ATCCATC--CTAA---ACTTagtaactacatg
gi|44 : A----GTT-GAT-T-GCAA------GA-TT-----T---GTGC-TT-TAT-ATAAACAA--TGTTT-T--AA--ATT-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TT------TTTATGTCAA--
gi|46 : atattcacttcCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-------------------CGCTGC----TTGGG--GGTT---T-G-CTCTGTAC-A-TAGGTAGC---GA-----GTTCAA--C---C-CCAGGCT-GGG------A-TGGAGGtttcc
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTG-GTTATACATGTACATTGC----TAGCA--GATT---G-G-GT---TCG-G-CAGGTCGT---GA-----------------------GCC-GGG------G-CGGAAATG-TGTATg
gi|49 : T-T-GCAA------T---------T---GTTT-CG-AAT-ATAGA-----TATTT-AGTAC--ATG-TA--TATG-T--ATAT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACATCAA--ATTACTGTAT---CCC-TTTCCttat
gi|5 : GGCGGAA-GTGCGTATCTA---TG----CC-AT-------------AGTGAATTTCTTTGTGCTTTATATTAAAATATT--T-----------C------TTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-A-C-TA----GTT-CAT-T-GCAATGCTAGTA-TT-----T---GTGC-T--T-T-ATAAA--A--TATTT-C--AA--ATG-CAG-ACAG-T--ATCA-TGT-A-----TG-ATCC-TC--T----------------A--ATGACTGTAT---CCCATTTCCA---ANNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTAG---ACATGC--C--T----AGA--GTCGATC--GGT---C---TAGCG-AGCTG-GTCA------CGCGCTGC----TTGGA--GATT---T-G-GT---TCT-A-CAGGACGC---GA-----GTTCAA--C---C-CCAGGCA-AGG------G-CAGAAGT
gi|51 : GT---C---TTGGG-CACTA-CTCA------GATGCTGT----CAGTA--GGTT---T-G-GT---CAC-G-CAGACCGT---GA-----GTGCAA--C---C-CCGGACT--GC------G-CGGAAGTG-GAT
gi|52 : CC-G-C---TCGT---GA-----GGTCAA--C---C-ACAGGCC-GTG------G-CAGAAGTG-GGTGTCgcccactc
gi|52 : ctagaCGTGGCAGAA-GTGGGTGTCTA---TA----GA-AT-------------AGTGAATAACTTCGTGCTTTAtatagaatagtgaataacttcgtgctttagcaatcaacatt
gi|54 : ctagaccgctcgtgaggtcaaccacaggc-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGTA-GAG------G-AGGAAATG-GG-ATCgcaatcaacatt
gi|54 : aGAGGAGGAA-ATGGG-ATCCA---T-----TAGAA-------------AATGAATTTCTATCTGTCTCTTA------------T-----------C------cattagaaaatgaatttctatctgtctcttatcgttttcttttt
gi|55 : acaggtcgtgagttcaaccccgggtaGGAA-GTGGGTATCAG---TG----TA-AT-------------AGTGAATTTCTTTGTGCTGTATA------------T-----------gttttcttttt
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGTTTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTtagataatatttcctcaataacggctatatatactttattt
gi|57 : -CAGGTCGT---GA-----GTTCAA--C---C-GCGTTCC-AGG------G-CGGAAGTG-GGTATCtcgggtggg
gi|57 : CAGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------ATT---TTTCTTTGTGCTTTATA------------T-----------catgtaatatttttctttgtgctttatattatatatttc
gi|60 : caggtcgtgagttcaaccgcgttcGT-T-A-----TG-TTTGTTA-A-AAGA----GGT-CAT-T-GCAA------TC-TT-----T---ATGC-T--TGTCATAAA--A--TATTT-C--AC--ATG-CAG-CATG-C--CTCTGTGT-tatatatttc
gi|68 : GCAGT-T-A-----TA-TTTATTT-C-A-GA----GTT-CAT-C-GCAA------TC-TC-----G---ATGG-TA-CA----AAA--A--TATTT-T--AA--TTA-CAG-T
gi|70 : TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTG-ATCA------CACGCTGC----TATGA--
gi|72 : G-CAG-TGTG-GGAATCT-TGT-A-----TA-ATCC-TT--TTAG---ATTTATGTCAA--ATAATTGTAT---Cat
gi|74 : CGGGGCGGAT-GTGGGTATCCA---TG----TA-AT-------------AGAGA
gi|8 : cgcaggacTGC-TA-TAT-AGAAA--A--TATTT-G--AA--ATG-TCG-TGTG-T--ATCT-TGC-A-----TG-GTCC-TC--TTAA---ATATATGCCAATAATAACTGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNTAG--------------ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTG-GTCA------CACGCTTC----TAGGA--GAAT---T-G-GT---TAG-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGGCTGAAG-CGGAAGTG-GGTATC
gi|8 : GCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCcatgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctgaaATTT-T--AATAGTA-CTG-TGTC-T--ATCG-TGT-A-----TG-ATCC-TC--CTAA---ATTCACGTCAA--ATAGCTGTAT---CCCGTTTCTAA--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNT-TTT-T--TTTTT---ACTTAC--C--T----AGATAACCGAG--------------------------TCA------CAGGCTGC----AAGGA--TATT---T-G-GT---TCT-G-CAGGTCGT---GA-----GTTCAA--CGTACACCGGGAC-AGG------A-CGGAAGTG-GGTATCgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : atatgcCAGGACGGAA-GTGGGTATC-A---TG----TA-AT-------------AGTGAATTTCTTAGCGTTTTATATTAATTAGTATTT-----------C------TTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A-atgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
blockSeqs : T AAT AAAT T TGTAAATTAGAAC TTAATTAGTATTTC C T . T CTGTA . C G A TAAC . G . CTCTTACAAAT . TTATA CA AG AGT TA C G . GA G . CTACA T A TTTTAAAAT TA C AAT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCC TA TCTAA . ATA ATA A TT TACATG ATGC . AGT T C CTG . A . CGTGA TT GTA A CT GCTGAA A T
blockSeqs : . . . G . TCAAAATATTTC . A . . . . . . . . . . . TGCTAGTATTT . ATAA . . TG . . . . . . . . . . TTAG . T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTG . CAT . . . . G . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . TTAAAATATTTC . G . . . . . . . . . . . TAATTCGC . ATAT . . AG . . . . . . . . . . TACA . T . ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAG . T . . . . G . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . TTGGAATATCC . T . . . . . . . . . . . TATTTT . ATAC . . T . . . . . . . . . . TCCA . A . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG . T . . . . T . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . TCATATTC . A . . . . . . . . . . . TATGT . TTAT . . T . . . . . . . . . . TTAG . T . TTTCAATGACAGTATAACATGGCACGGCGTGGTGAAAATTTCACTTTCTTGCAAACAAGTTTGTTG . T . . . . C . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . CC . A . . . . . . . . . . . TATTT . TTAT . . G . . . . . . . . . . TTGG . C . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTT . G . . . . G . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . TC . T . . . . . . . . . . . TCTTT . GAAT . . C . . . . . . . . . . CTAA . T . TTCTTAATCACCGTGTAGTGTGCACGAGTAGTTAGTTGTACGCAAGAATCCCATGGTCTTTG . C . . . . G . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . TC . A . . . . . . . . . . . GATTT . TGTC . . C . . . . . . . . . . TTAA . C . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAG . T . . . . G . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . TC . . . . . . . . . . . . TCTTT . ATAT . . C . . . . . . . . . . CTAA . A . CTTGTTTGGCGCGTGGGATTGCTTAGTCGTTCTCGCTCAGTTTTAGTG . T . . . . A . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . TC . . . . . . . . . . . . TCTCG . ACA . . C . . . . . . . . . . TTAA . C . . C . . . . A . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . TAT . ATG . . G . . . . . . . . . . TTAG . C . . T . . . . G . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . TA . ACA . . G . . . . . . . . . . TTAA . T . . T . . . . G . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . TT . GT . . G . . . . . . . . . . CTAA . C . . T . . . . G . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . TT . . T . . . . . . . . . . AA . C . . . . . . . G . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . TT . . C . . . . . . . . . . TT . . . . . C . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . C . . . . . . . . . . T . . . . A . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . A . . .
blockSeqs : . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . C . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . C . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : TTATC************************** N* **** NTAT** TTAA***** ** ****** ** ***
originalCons : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATA------------T-----------C------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
finalCons : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCTTTATATTATC--------------------------TTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TNTAT--ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TCTTAA-----ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC
Alignments
lowQualScore : 1111111111111 66666666666666666 11111111111111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 2 333 4444 4 1111111111111 33 3 33333333333333333 4 44 5 2 77777 5 2 2 3 8888 2 2 2 00000000000000000000 2 88 5 4 33 22 7777 22 1 1 2 22 4 2 55555 2 2 444444444 33 2 444 666666666666666666666666666666666666666666666666666666666666666666666666666666 33 7777777 0 22 333 333 2 22 777777 0 4444 0 22 333 1 1 333 1 1 333 44444 22 333 1 0 22 555555 1 2
lowQualScore : . ... .... . ............. .. . ................. . .. . . ..... . . . . .... . . . .................... . .. . . .. .. .... .. . . . .. . . ..... . . ......... .. . ... .............................................................................. .. ....... . .. ... ... . .. ...... . .... . .. ... . . ... . . ... ..... .. ... . . .. ...... . .
lowQualScore : 2 999 7777 2 6666666666666 22 1 22222222222222222 0 33 3 9 11111 7 7 9 1 9999 9 7 7 88888888888888888888 5 44 0 8 11 99 8888 88 9 9 0 88 2 1 66666 2 2 999999999 44 0 777 999999999999999999999999999999999999999999999999999999999999999999999999999999 77 3333333 2 99 555 555 0 77 444444 1 2222 9 55 333 9 9 555 9 7 000 33333 66 333 9 2 55 555555 9 1
consensus : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGC--TTTATAT-T---A-----T---T---CTTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TN-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
Reference ( family-180 ) : NCGGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGC--TTTATAT-T---A---------T---CTTCAC-TN-AGGGCAGT-T-A-----TG-TTTATTT-A-A-GA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TN-TAT-ATAAA--A--TATTT-N--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACGTCAA--ATAACTGTAT---CCCATTTCCAT--NTCCAAACGACCGTNTAGCGCG-CGCGGN-TNG-TTAGNCGTNCNNNNNNNTCGCANGCNAGTT-T--CTTTG---ACTTGC--C--T----AGATGGTCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTGC----TAGGA--GATT---T-G-GT---TCC-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATC
gi|10 : -AGGGCAATCT-A-----TGCTTTATTT-C-A-GAA---GTTGCAT-TTGCAC------TA-TT-----T---TTGCATAGTAT-ATAA--------CTT-T--GA--ATG-CAG-TGTGTT--ATCCGTGTAA-----TG-ATCA-TC--CT-A---ATTTACGTC-A--ATAA---TAT----CCA-TTCCAT------AAACATGTGTTTNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-TAAC-------ACTTAC--G--A----AGATAGT-GAGCGGGGT---T---TGGTG-CGCTG-ATCAG-----AACAATAG----TAGGACGGA-T---T-G-GT---TCCTG-C-TGTCGCAAAGA-----AT--AA--C---C-C--GGCC-TGG------G-C--AAGTG-GGT
gi|12 : aA-AT-------------AGCGAAATT-TGCGTGC--TTTATAT-T---ACAAATTTT-T---CTTCAC-TTTAGGGCAGA-T-A-----TG-TGTATTT-A-A-GATAACTTT-CAT-T-GCGC------TATTT-----T---GTGC-TT-TATAATCAA--A--TATTT-T--AA--A-G-TAG-AATG-T--ATCT-GGT-A-----TG-A----------------------TCAA--ATAGCTA------CC--TTTCCATNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNTGTCCACTTGC--C--T----AGATGGGCAAGC--GGT---C---TTGC
gi|13 : C-TT-AGGAAAGC-T-A-----T--TTTAATT-A-A-GA----ATT-AAA-T-GCAA------TA-T----------------G-TAT-A----------ATTT-T--A----------------T--ATTA-TAT-A-----TG-ATCC-TC--TTAG---ATTTACATCAA--ATGATTGTAT---CTCAACT-CAT--TTCTTAATCACCGTGTAGTGTG-CACGAG-TAG-TTAGTTGTACGCAAGAATCCCATG---G---T--CTTTG---AC-CACTAC--T----AGAGCATAGA----------C---TATTG-CACTG-GTCA------CACAATTC----TAGGT--GATT---T-G-G
gi|18 : cacA-TT-----T---TTCC-CA-TAA-ATAAA--A--TATTT-G--AA--ATG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TCTTTTAAAATATTTACGTCAC--ATAATTGTGT---CCCATTTCCAT---NNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTTG---ACTTGC--C--T----AG--------GT--AGT---C---TAGCG-TGCTG-GTCA------CAT-CTGC----T
gi|19 : gaC--GGC---T---TAGCG-CCACG-TTTG------TACCCTAC----CAA-----ATA---T-GCGC---TCC-G-CAGGTCGT---GA-----GTTCAATTC---C-CCGTGTA-GAG------G-CAAAAGTG-
gi|19 : GAGGCAAAA-GTG------CA---T-----T---T-------------GGTTAATTTTTTCCTGC--TCTATAT-C---A---------TATTCTTCACCTA-ATGGCCGT-TTA-----CG-TTTATTT-AGA-TA----ACT-CAT-T--CAA------TA-AT-----TCGCGTGC-CA-CA----AAA--A--TATTT-C--AA--ATGCCAG-TAT--T--ATcatttggttaattttttcctgctctatatcatattcttcacctaatggccgtttacgtttatttagataactcattcaataattcgcgtgccacaaaaatatttcaaatgccagtattat
gi|2 : cggcttagcgccacgtttgtaccctaccaaatatgcgctccgcaggtcgtgagttcaattccccgtgtaA--A--TATTT-C--AA--ATT-CAG-TGTG-T--TTCC-TGT-ACTACATGTATCT-CC----AA---ATTTACATGAA--ATGAATGTATAATCCTATTTCCAT--TTTCAA-TGACAGTATAACATGGCACGGCGTGG-TGAAA-ATTTCACTTTCTTGCAAACAAGTT-T--GTT-G---ACTTGT--C--G----AGATGAATAAGC--AATATACATATAATA-CACTG-CTCA------GACACAGC----CAGGA--GATT---T-G-AC---TCC-G-CAGGTCAA---AA-----GCTGAA--C---T-ACGGGTA-GGG------G-CGGACGT----TATC
gi|2 : GGGGCGGAC-GT---TATCCA---TAAAATTA-AT-------------AGCG-ATTTCTTcataaaattaatagcgatttcttctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : aatatttcaaattcagtgtgtttcctgtactacatgtatctccaaatttacatgaaatgaatgtataatcctatttccattttcaatgacagtataacatggcacggcgtggtgaaaatttcactttcttgcaaacaagtttgttgacttgtcgagatgaataagcaatatacatataatacactgctcagacacagccaggagatttgactccgcaggtcaaaagctgaactacgggta--GATT---T-G-GT---TTC-G-CAGGTCGT---GACGTGAGTTCCA--T---C-CCAGGCC-GGG------C-CGGACCTG-AGTGTCctgatgtaaatatacacatataaagcactagattgaccaaggacaggaacaattacatgtacattgtcatattttcccttccttaggacggggtatgatta
gi|21 : gCGGGCCGGAC-CTGAGTGTCCA---TA----CA-AT-------------AGTGAATTTCTCTGTGC--TTTACAT-C---AAAATATT--T---CTTCAC-TG-AGGGCAGT---------TC-TCTATTTCA-A-G-------------T-GCAA------TG-Tcatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctctatttcaagtgcaatgtccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|21 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggc--TATTT-C--AA--GTG-CAA-TGTC-C--AGCT-TGT-A-----TG-ATCA-TC--TACA---ATTAACGTTAC--ATGAT--TAA---CCCATCTCCAT--ccagcttgtatgatcatctacaattaacgttacatgattaacccatctccat
gi|24 : ggatttggtttcgcaggtcgtgacgtgagttccatcccaggccgggccggacctgagtgtccatacaatagtgaatttctctgtgctttacatcaaaatatttcttcactgagggcagttctcCGAGC--GGT---C---TAGCG-CGCTG-GTCA------CACGCTCC-------GA--GATT---T-G-TT---TCC-G-CAGGTTGT---GA-----GTTCAA--C---C-C----TT-GGG------G-CGGAAGTG-GGTATC
gi|24 : GGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------TGAGAATTTCTTTCTGC--TTTATAT-TGGAA---------TATCCTTCAG-TT-ATGGAAGT-catgtaattgagaatttctttctgctttatattggaatatccttcagttatggaagtgcgacattcaacttcagggatacttaaaagtccagact
gi|25 : cgagcggtctagcgcgctggtcacacgctccgagatttgtttccgcaggttgtgagttcaacccttAAA--A--TATTT-C--AA--ATG-CAG-TGTA-T--ATCT-TGT-A-----TG-ATTC-TG--TCCA---A--TGCATCAA--ATGGCCGTAT---CCCGTATTCAT--CT---------TGTTTGGCGCG-TG-GGA-TTGCTTAGTCGTTC-------TCGC---TCAGTT-T--TAGTG---GCTT------------------TC-AGC--GGT---C---TAACG-TTGTG-GTCA------CATGCTGgcgacattcaacttcagggatacttaaaagtccagact
gi|26 : ---ATTTGC--CCAT----AGGTGTTCGAAA--AGT---C---TAGCT-TGCTG-GCCG------CGGGCTTC----TAGGA--GGTT---T-G-AA---TCC-A-CAGGTCAT---GA-----GTTCAA--C---C-ACGGGTG-GGG------G-TTGAAGCT-GGTATCaaga
gi|26 : cttGGGGTTGAA-GCTGGTATCCA---TA----TA--T-------------AGTAAATCTCTCAGTGC--TTTAcatatatagtaaatctctcagtgctttacctttacaatgaacgtt
gi|27 : cttatttgcccataggtgttcgaaaagtctagcttgctggccgcgggcttctaggaggtttgaatccacaggtcatgagttcaaccacgggtgAACG-CGCTG-ATCA------CACACTGCATGCTGGGA--GATT---TTG-AT---TCT-G-CAGGTCGT---GA-----G-TCAA--C---C-C--GTCCTGGG------A-CGGAAGTG-GGTATcctttacaatgaacgtt
gi|27 : GGGACGGAA-GTGGGTATTCG---TG----GA-ATTGTAAATTAGAACAGTGAATTTCCTTGTGC--TTTATtcgtggaattgtaaattagaacagtgaatttccttgtgctttatccccactgtttgtgatata
gi|32 : aacgcgctgatcacacactgcatgctgggagattttgattctgcaggtcgtgagtcaacccgtcctAC-TA-AGGGCAAT-T-A-----TG-TTAACT--A-C-GA----GTT-AAT-T-GCAA------TA------------GTGC-TT-TAT-A--AA--A--TATTT-TG-AA--ATG-CAGGTGCA-T--ATCT-TGT-A-----TG-ATCC-TC--TTAG---ATTTATGTCAA--ATAATTGTAT---CCCccccactgtttgtgatata
gi|33 : A------CACCCTGC----TAGGA--GATT---T-A-GT---TCT-G-CAGGTAGC---GA-----GTTCAA--C---T-CCGGGCA-GGG------A-TAGATGTG-GGTACC
gi|33 : aGGGATAGAT-GTGGGTACCCA---TA----TG-AT-------------AGTGAATTTCTCTGTGC--TTTATAT-catatgatagtgaatttctctgtgctttatatacatgtgctttta
gi|34 : aacaccctgctaggagatttagttctgcaggtagcgagttcaactccgggcaGAGT--GGT---A---TAGAAACGCTG-ATCA------TGAAATGC----TAGAT--TATTAGTT-A-GA---TCT-AACGGGTTGT---AA-----GTTCAA--C---C-CTTGGCC-GGG------GACGGAAGTG-GATATacatgtgctttta
gi|35 : GA--GGTT---T-G-GT---TCC-G-CAGGTCAT---GA-----ATTCAA--C---C-GCTTGCC-AGA------G-TGGAA-TGTGGTATCtcaccgagcttccacca
gi|35 : acaCAGAGTGGAATGTGG-TATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGC--TTTATATCT---A---------T---TTTcatgtaatagtgaatttctttgtgctttatatctattttttttttacctag
gi|38 : acagaggtttggttccgcaggtcatgaattcaaccgcttgcTT-A-A-GA----GTT-CATGT-GCAA------TA-TG-----T---GTGC-TA-TAT-CTAAA--AAGTATTT-G--AA---TG-CAG-TGTC-T--ATAT-TGT-A-----C--ATCT-TC--TTGG---GTTTACGCCAA---TAACTGTAT---TCCATTTCCAttttttacctag
gi|39 : TCG-AAGCAAGTT----CTTCG---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTG-GTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTTC
gi|4 : aattttattttCGGAGAGGAA-GCGTTTATCCG---TG----TA-AT-------------AGTGAATTCCTTTGTGC--TTTAT-----------------T---CTGCAC-TA-AGGGCAGT-T-A-----TG-TTTATTT-A-A-AA----GTT-CAT-T-GCAA------TA-TT-----T---GTGC-TA-TAC-ATAAA--A--TATTT-G--AA--ACG-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--CTAA---ATTTACGTCAA--ATATATGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT--CTTTG---ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAGCA-CGCTA-GTCA------CACACTGC----TAGGA--GATT---T-G-GA---TCC-C-CACATCGT---GA-----GTTTAA--C---C-CCGGGCC-GGG------G-CGGAAGTG-GGTATCgggtg
gi|40 : gAGT-T-A-----TG-TTTATTC-A-G-GA----GTT-CGT-A-GTGAC-----TC-TTACAAAT---GTGT-T------ATGAA--A--TATAT-G--AA--ATC-TGG-AGTG-T--ATTA-CGT-A-----TG-ATTC-TC--TTAA---AT
gi|41 : GAA--GAAT---T-G-GT---TTC-G-TAGGTCGT---GA-----GTTTAA--C---C-TCGGGTA-TGA------G-AGGAAGTG-GGTATCggctgtctcattt
gi|41 : GGAA-GTGGGTATCCAAATTG----TATAA-------------AGTGAATTTC-CTGTGT--TTTATAcaaattgtataaagtgaatttcctgtgttttataagtaactacatg
gi|43 : gaagaattggtttcgtaggtcgtgagtttaacctcgggtatgaga-AGGGCAAC-T-ACTGTATG-TTTATTT-A-A-GA----GTT-CAT-T-GCAG------TC-TT-----T---GTGC-TT-TAT-AAAAG--A--TATCTAG--GA--ATG-CAG-AATG-C--AC-----T-G-----TG-ATCCATC--CTAA---ACTTagtaactacatg
gi|44 : A----GTT-GAT-T-GCAA------GA-TT-----T---GTGC-TT-TAT-ATAAACAA--TGTTT-T--AA--ATT-CAG-TGTG-T--ATCT-TGT-A-----TG-ATCC-TC--TT------TTTATGTCAA--
gi|46 : atattcacttcCTTGC--T--TCTAAAGATGGTTGAAC--GGT---C---TAGCG-------------------CGCTGC----TTGGG--GGTT---T-G-CTCTGTAC-A-TAGGTAGC---GA-----GTTCAA--C---C-CCAGGCT-GGG------A-TGGAGGtttcc
gi|47 : TGGTCGAGC--GGT---C---TAGCG-CGCTG-GTTATACATGTACATTGC----TAGCA--GATT---G-G-GT---TCG-G-CAGGTCGT---GA-----------------------GCC-GGG------G-CGGAAATG-TGTATg
gi|49 : T-T-GCAA------T---------T---GTTT-CG-AAT-ATAGA-----TATTT-AGTAC--ATG-TA--TATG-T--ATAT-TGT-A-----TG-ATCC-TC--TTAA---ATTTACATCAA--ATTACTGTAT---CCC-TTTCCttat
gi|5 : GGCGGAA-GTGCGTATCTA---TG----CC-AT-------------AGTGAATTTCTTTGTGC--TTTATAT-T---AAAATATT--T---CTTCAC-TT-AGGACAGT-T-A-----TG-TTTATTT-A-C-TA----GTT-CAT-T-GCAATGCTAGTA-TT-----T---GTGC-TT---T-ATAAA--A--TATTT-C--AA--ATG-CAG-ACAG-T--ATCA-TGT-A-----TG-ATCC-TC--T----------------A--ATGACTGTAT---CCCATTTCCA---ANNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNTAG---ACATGC--C--T----AGA--GTCGATC--GGT---C---TAGCG-AGCTG-GTCA------CGCGCTGC----TTGGA--GATT---T-G-GT---TCT-A-CAGGACGC---GA-----GTTCAA--C---C-CCAGGCA-AGG------G-CAGAAGT
gi|51 : GT---C---TTGGG-CACTA-CTCA------GATGCTGT----CAGTA--GGTT---T-G-GT---CAC-G-CAGACCGT---GA-----GTGCAA--C---C-CCGGACT--GC------G-CGGAAGTG-GAT
gi|52 : CC-G-C---TCGT---GA-----GGTCAA--C---C-ACAGGCC-GTG------G-CAGAAGTG-GGTGTCgcccactc
gi|52 : ctagaCGTGGCAGAA-GTGGGTGTCTA---TA----GA-AT-------------AGTGAATAACTTCGTGC--TTTAtatagaatagtgaataacttcgtgctttagcaatcaacatt
gi|54 : ctagaccgctcgtgaggtcaaccacaggc-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGTA-GAG------G-AGGAAATG-GG-ATCgcaatcaacatt
gi|54 : aGAGGAGGAA-ATGGG-ATCCA---T-----TAGAA-------------AATGAATTTCTATCTGT--CTCTTAT-C---G---------T---TTTCcattagaaaatgaatttctatctgtctcttatcgttttcttttt
gi|55 : acaggtcgtgagttcaaccccgggtaGGAA-GTGGGTATCAG---TG----TA-AT-------------AGTGAATTTCTTTGTGC--TGTATAT-T---AGATAATATTT---CCTCAA-TA-ACGGCTATAT-A-----TACTTTATTT-ttttt
gi|56 : G---ACTTGC--C--C----ACATGGTCGAGC--GGT---C---TAGTG-CGCTGTTTCA------CACGCTGC----T---A--GATT---T-A-GT---TCT-G-CAGGTCTA---GA-----GTT
gi|57 : -CAGGTCGT---GA-----GTTCAA--C---C-GCGTTCC-AGG------G-CGGAAGTG-GGTATCtcgggtggg
gi|57 : CAGGGCGGAA-GTGGGTATCCA---TG----TA-AT-------------ATT---TTTCTTTGTGC--TTTATAT-T---A---------T---catgtaatatttttctttgtgctttatattatatatttc
gi|60 : caggtcgtgagttcaaccgcgttcGT-T-A-----TG-TTTGTTA-A-AAGA----GGT-CAT-T-GCAA------TC-TT-----T---ATGC-T--TGTCATAAA--A--TATTT-C--AC--ATG-CAG-CATG-C--CTCTGTGT-atatttc
gi|68 : GCAGT-T-A-----TA-TTTATTT-C-A-GA----GTT-CAT-C-GCAA------TC-TC-----G---ATG---G-TAC-A-AAA--A--TATTT-T--AA--TTA-CAG-T
gi|70 : TG---ACTTGC--C--T----AGGTGGTCGTTC--GGA---C---TAGGG-CGCTG-ATCA------CACGCTGC----TATGA--
gi|72 : G-CAG-TGTG-GGAATCT-TGT-A-----TA-ATCC-TT--TTAG---ATTTATGTCAA--ATAATTGTAT---Cat
gi|74 : CGGGGCGGAT-GTGGGTATCCA---TG----TA-AT-------------AGAGA
gi|8 : cgcaggacTGC-TA-TAT-AGAAA--A--TATTT-G--AA--ATG-TCG-TGTG-T--ATCT-TGC-A-----TG-GTCC-TC--TTAA---ATATATGCCAATAATAACTGTAT---CCCATTTCCAT--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNTAG--------------ACTTGC--C--T----AGATAGCCGAGC--GGT---C---TAACG-CGCTG-GTCA------CACGCTTC----TAGGA--GAAT---T-G-GT---TAG-G-CAGGTCGT---GA-----GTTCAA--C---C-CCGGGCC-GGGGCTGAAG-CGGAAGTG-GGTATC
gi|8 : GCGGAA-GTGGGTATCCA---TG----TA-AT-------------AGTGAATTTCTTTGTGCGGGTTAAAT-T---A---------T---catgtaatagtgaatttctttgtgcgggttaaattataaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : tgctatatagaaaatatttgaaatgtcgtgtgtatcttgcatggtcctcttaaatatatgccaataataactgtatcccatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacttgcctagatagccgagcggtctaacgcgctggtcacacgcttctaggagaattggttaggcaggtcgtgagttcaaccccgggccggggctgaaATTT-T--AATAGTA-CTG-TGTC-T--ATCG-TGT-A-----TG-ATCC-TC--CTAA---ATTCACGTCAA--ATAGCTGTAT---CCCGTTTCTAA--NNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNT-TTT-T--TTTTT---ACTTAC--C--T----AGATAACCGAG--------------------------TCA------CAGGCTGC----AAGGA--TATT---T-G-GT---TCT-G-CAGGTCGT---GA-----GTTCAA--CGTACACCGGGAC-AGG------A-CGGAAGTG-GGTATCaaaacaaaataatataaccaaacaaatgtcacatg
gi|9 : atatgcCAGGACGGAA-GTGGGTATC-A---TG----TA-AT-------------AGTGAATTTCTTAGCGT--TTTATAT-T---AATTAGTATTT---CTTCAC-TA-AGGGCACT-T-A-----CT-TTTATTT-A-atgtaatagtgaatttcttagcgttttatattaattagtatttcttcactaagggcacttacttttattta
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCACTTATACCAACAACACTCTATGACTTCATTAGTGTCGGATTCTATTGAATAGATGCAGATCAGAATAATGAAATCATATAAAGCACTAGAATGACCACGACACGACAATTAAATTGCAAATTTTCGAACGACCTGTCCCTTCTCAGGCACGAATATGTTTGGTATAAGAAAATACAATGAGAAATGAAAAAAAAAAAACAACCCAAGAATCTAAACACAACTACACTTTGAGTTGATGGGAGTATATACTGTTTACATATTACAAGTAAAACGTTAATGAGAAAAATAAAAACAATGATCAAACTCAATGAACAACCTCAGACAGCTAATTGAATAGATGCGGAGAGTATAACAATTACATTATGCAATTTACGTCGACTCAAGCTACGAAGTACAACGACACACTCATGACTAGCATCAAAATCAAACTTTCCGAAAA
Unaligned ( gi|3 ): TCTAGAATGACCAACGACACGACAATTAAATGTGTCCAAATTTTCGGGACGACTGTCCTTCTTCAGGACGAATATGGTTACAAGAAATACATGAGAGATGAAAAAAAACAACAACAAATCTAAACACTAATTCTATACTACGGAAACGATGGGAGTATATACTGTCTACATATTACAATGTGAAACAGTTACATGAGAACAAGTTTAACGTAATGATCAAACCAATAACAACTCAACACTACATCTGAATAGATGGCGGTGAGAGTATAAACAGTTACATTATGCAATGTTACGTCGACTCAGCTACAAAATACACCGAGCAACTCAATGACTAGCTTCAAAAAATTCAAACTTTTCCGGAAATAA
Unaligned ( gi|6 ): TAAAATGATCAACAACATGAACAATCAAAATTGTCAAATTTTTGGGACGACCTGTCCCATCTTCAGGACGGGGTATAATTATAAGAAATACACGAGAAATGAAAGACATAATGAAACTAAACACTAATCTACACTACAAATGTGATGAAAGTATATACAAGCTACATTTTGCAATATGTTAGAACAGTTACATGAGAAAAGAAAACCACAATGATCCAACCAACGACAACTAAACACTAAATCTGCACTGCGGTGAGAGTATATATACAAACTACATTTTGCAATGTTAGAACAGTTTAGTAGGAAAAGCACAACCGATCGACTCAGTGACTAG
Unaligned ( gi|7 ): AGCACTAAAAATGACCAACGACACATAATTATAAAGTCAAATTTTCGGGACGACCTGTCCCTTCTTCAGGAGAATATGGTTAAAAAGACATGACAAATTAAAAAAAACACAATCTAAACCACTAAATATGATGGGAGTATATGCTGTCTACATATTCAATGTAAAACAGTTATCATGGGAAAAATAAAAACGTAATGATCAAACCATGACAATTCCAACACTACATCTGAATAAGATGCGGTGAGAGTATGAACATTACATTATGCAATATTACGTCGACTCAGTTATAAAGTACAAACAAGCAACTAAGTAATTCAAACTTTTCCGGGGAAAA
Unaligned ( gi|11 ): ATTTGGTAAAACAAACATGAGGAATTGAAATAAAAACCAATGAATCTAAACAACGTAAAATGCTCTTCCACACTACGGATATGATGGAAGTATATACGTCTACAGTATTACAATGTAAACAGTTCATGGAAAAATAAAACTAATGATCAAACCAATGCACAACTTCAACACTGACATCTGAATAGATGCGTTGCGAGTATGATCAATTACATTATGCAATATTCTCGACCAGTTATAGAGACAACAACTAATATTCAAACTTTTC
Unaligned ( gi|14 ): ATAAAATGTTTAAAATGAAAATGCATCTAAGACTACCAGAGAGAAATTAGTACTGAATTGAAATTGATAAAACGCTAGATTGACCAACGACACGAACTATTTAATTGTCAAATTTTTGGGACGACTTGTCCCTTCTCCAGAACGGGCTATGATTATATGAAATGCATTAAGAAAAAAACCTAAAATTATCAAACTAATAAACAATAAGCACTAA
Unaligned ( gi|15 ): AATATTGTCTACATATTACATGTAAACAGTTACATGACAAATAAAACGTAATGGATAAACCATGACAACTCAACACTACATCTGTGAATAAATGCGGTGAAGAGAATGAACAATTACTTACACTGTTTACTCGACTCAGCAAAAAAAAAATAATAAAGTTACAAACGAGCAACTATCAATGACGCCAATCAAAAATTCAAGACTTTTCGGAA
Unaligned ( gi|16 ): AAATCTATTTTCTTTGGGGCAAATATATATAAAGCACTAAGAATGACCAACGGCAACGAACAATAAAATTGTCAATTTCGGAGCGACCTGTTCCTTCTTCAGGAGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCACAAAAAAACAAGAATATAAAAACTAAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|17 ): ACAGTATATAAAAGCACCATGCTCCAACAACACCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTACCTTCTTTGGAACAAACGAAAAGGTTAACATAAAAATAGGG
Unaligned ( gi|20 ): ATAAAAGCACCATGCTCCAACAACACCCCGATACTTATCAATGTCGGATCAACAAAGTGGATTCAAAGGTCAAACAGAAGCACAAAGGTCATTACAAAGCACTAACATGACCAACGACACGAATAATTAGATTAGCTATTTTTCGGGACGACCCGTAACTTCTTTGGAACAAACGAAAAGGTTTAACATAAAAA
Unaligned ( gi|22 ): GACCAACCGACACACGAACAATTCATTGTATAATCTTTCGGGATCGACCTGTGTGCCCCTCTTTCAGTGACCGAATTATGGTTACAAAGAAAACATAAGGATAAAAAAAACAACAAAAAATCTAAACACTGTAATTCTAACACTGACGAAACGAGGTGAGGTATAACTGCTACATATTGCAA
Unaligned ( gi|23 ): ATATATAAAGCACTAGAATGACCAACGGCACGAACAATAAAATTGTCAAATTTTCGGAGCGACCTGTTCCTTCTTCAGGACGAATTATGGTTATTAGAAATACATGAGAAATGAAGAAAAAACCCCAAAAAAACAAAGAATATAAACACTAAATCTACATATAAGACAGTGACTTGATGA
Unaligned ( gi|28 ): ATACACTAACAACACTCTGTCTCATCTATTAATTAAATGAAATCAGAATATGTAGTTATGTAAAGCACTAGAATGACCAACGACACGAACAGATAAATTGTCAAATATTTGGGACGACCTTTTCCTTTCCCAAGATTTGTTTATT
Unaligned ( gi|29 ): CCAAGACAAAAATATACACAGCACCAAATAATTGGCCAAGCGACACAATCAATGAAAATCGTCAAATTTTTGGGTCAACCCGTCCCTTCCAATAAAGAAGTTAAAAACGAATGTGGAAAAGACAGATCAATAAAAGCAGAACTA
Unaligned ( gi|30 ): TCAAATATATCAAGTGAAAGCAAGGTCAGTGAGAAAAATCAAGTGATTTAATAAATCACACAAATGTCTAAAGCCACGAACGATATTGGTTGTCAGATTTTAAGGACTACTTGTCTGTTTTCTAGGATGGAGTATGGT
Unaligned ( gi|31 ): AAGCACTATAATACCAACACATCAATGAACTCATAGTGGTCGGATCTGTTGAATAGATGCAGATCAGAAATATGAAATCCATTAAAGCACTATCATAGAACTGACCAACAACGTATATTGTCAATTAAA
Unaligned ( gi|36 ): AAGGTCAAACACAAGAATTATTCAAACCACTAAAATGACCAACGACACGTACAATGACGACCAGTCTGTTCTTCAGGACAAAACAAAAGTTTAACATAAGATGGCGAAAA
Unaligned ( gi|37 ): AATAAAACAACATCAGTATAGTGTATTTAATCATAGAAAGCTTTAGCTAGAATGACCTGCGACACCAACAATATGGATTGTCAAATGTTCGGGAAAACCTGTTCCTT
Unaligned ( gi|42 ): TAAGCAGCGTATAAATGAAACCCAACGGACACTAAGTTAAAAGTCAAATTTTCGGGCCGAACCTTCCCTTCTTCAGGAGCGAATGATAACAGATACAATATGA
Unaligned ( gi|45 ): TATGATCAACGCCCGGGGATCAACAACGACACGAACAATTGTCAAATTCATTATTTCAAATTTTGGGGACGACCCTGTCCCTCTTTGGGCGAATA
Unaligned ( gi|48 ): CTAGAATGACCAAACGACACAAACAATTTTCGGGATGACCTGTCCTTTCTTCAGGACGGGGTATGATTACATGAAGAATGATTCCCTGAAGA
Unaligned ( gi|50 ): AAGCAATTACATTGTTAAATTTTCGGGACGACGTGTCCTCTCCTCAGGATGAGGTAGGATTATATGAAATTCACGAGAAGAAAAAAATAAA
Unaligned ( gi|53 ): ACTAGAAGATGACCAACGACATGAACAGTTATATCGTCAGATTTTTTAGACGACCTATCCCTTCTTCGAGACGGGGTATGATTATATG
Unaligned ( gi|58 ): AAGCACTAAATTGACCAACGACACGAAATTGTCAAATTTTCGGGACTTCTTCAAAACAAATGAAAAGGCTGACATAAAATAG
Unaligned ( gi|59 ): ACATAAGTCACTAAAGTGACCAACGATACGAACACTTACAAAACCAAATACTCCGAACAACCTGTCGCTTGCTCAGGAC
Unaligned ( gi|61 ): AATGATGCGAACAATTAGATTGTCAAATTGTCGAGACGACCCGCCGCACAAGACAAACGAAAACGTTGACATAAGA
Unaligned ( gi|62 ): CTAAAATGACCGAACCGACACATAAGTTATAAGGTAAAATTTTTCGGGAAACGATCAGTCCCTTCTTCAGGACG
Unaligned ( gi|63 ): CTAGACTGACCCAACGACAAGAAAAATTAAATTTGTGAAATTGTCGAAGAATCCGAACCTGTCCCTTCTTC
Unaligned ( gi|64 ): ACGAATGCAACATAATTCTACACTACGGAAACGGATGGGAGTACTATACTGATCTTATATTACAATTGA
Unaligned ( gi|65 ): ATTTTTGGGACGGCCTGTCCTTTCTTCAGGACTGTAGCATATCAAAAAAAAGTAAAGAAAACAAAA
Unaligned ( gi|66 ): TGAGATGATGAAAATGACACAAAATAAAATAGTTAAATTTTCGGAGACCTGTCCCATCTTCAAGA
Unaligned ( gi|67 ): TCTAAAGCACTAGAATGACCAATCAATTCAATCAAAATTTTTGGGACGACCTATCCCTTCTTCAG
Unaligned ( gi|69 ): CAACAACACCCAATACCTATCAGTGTTGGATCAACAAAGCTGATGCCAGGCCAAACACAA
Unaligned ( gi|71 ): GACCAATGACATGAACAATATCAAATTGTCATATTGTTTGGTAGACCTGTCCCT
Unaligned ( gi|73 ): ATATATAAAGTTCCAACAATACCTGATACCTATCAGTGTCGGATC
Unaligned ( gi|75 ): TTTTCGGGACGACCTGTCCCTTCTTCAGGGAATC