lowQualScore : 1 2222 11111 1111 111 111 111111 1111111 22 1111 1111111 111 11 11 2222222
lowQualScore : 7 4 7777 5 2222 3 3 99 00000 4444 3 777 7 99999999 333 555 777 666666 4444444 22 22 888 4 0 0000 5 3333333 000 00 4 3 4 3 00 5555555 55
lowQualScore : . . .... . .... . . .. ..... .... . ... . ........ ... ... ... ...... ....... .. .. ... . . .... . ....... ... .. . . . . .. ....... ..
lowQualScore : 0 3 0000 7 9999 3 3 22 22222 2222 3 333 3 33333333 555 444 888 666666 4444444 11 33 888 5 1 6666 0 2222222 000 33 0 2 0 0 99 5555555 55
consensus : TACGACTAAGATNAAAATT--T-CGTGTCTG-CC-TT-ATA-CTCAACTGAGTG--C----NAC----TAT-GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTT-------TGCTCATT-NAAAACANATGAATGAAGAATTAT----A-AATGAATTGC--CG-TA---TTTTGAAATT-TTNA-TCTTAATCGT-AAGA-------TTT--TTTGTGAAAAGG
Reference ( gi|5 ) : TACGACTATGATCAAAATT--T-TGTGTCTG-C--TT-ATA-CTCAACTGAGTG--C----CAC----TAT-GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTACTTATATACT---T---A-AGTTT-------TGCTCATT-AAAAATATATGAATGAAGAATTAT----A-AATGAATTAC--CA-TA---TTTTAGAATT-TTCA-TCTTAATTGC-AAGA-------TTT--TTTGTGAAAAGGA
gi|3 : TACGACTAAGATGACAATG--T-TGTACCTG-CC-TT-ATA-CTCAACGGAGTG--C----AAC----TAT-GCC-C-TGAGTAAGAA-TGCA----T---GTTTTTC-ACCTATTTACATACC---T---A-AGTTC-------TGCTCATT-CAAAACAAATTAATGAAGAATTAT----A-AAAGAGTTAC--CG-TA---TTTTCAAATT-TTCA-TCTTATTCGTAAAGA-------GTT--TTTGTGAAAAGG
gi|2 : tctTACGACTAAGATCAAAATT--T-CGTGTACA-CCATA-ATAACTTAACTGAGTG--C----CAC----TAT-GCT-C--AAATAGAAA-TGCT----A---GCTTGT-CATTTTTGTATAAACT---T-----AGTTT-------TGCTATTT-CAAAACAGATG-ATCAAGAATTATAATGA-AATTAATTG---TG-TA---ATTTGAAATTGTTCC-TCTTAATCGT-ATGAT------TTT--TTTGTGAAAgc
gi|4 : aaactaTACGACTAAGATCAAAATT--T-CATGTCAG-C--TTTATA-CTTAACTGAGAG--C----CAC----TAT-GCC-T-CGAGTAAGAA-TGCATTGTA---GCTTGT-CATCTA-TTATGCA-G---T---G-GGTTTGTTATTCTGCT--TT-TAAAATATcag
gi|6 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcccttttcacaaaaaatctTACGACTAAAATAAAAACAAAT-TGTTTCTGTC--TT-ATA-CTCATTTGATTG--C----AAC----TAT-GTT-C-TGAGTAAGAC-T------------TTTGTCTCCC-----ATGTATT---T------GTTT-------AGTTT---------TATATGAGTGAAGAATTTT----A----GAATTGCATCA-TAAGGTTTTcaa
gi|14 : atgtggccattttcacaaagtttctTACTACAAAGATAAACATT--T-TAT---------CT-ATA-CTCAACTGAGTG--CACTACAT----TGTAGCC-CTTGAGTAAGAG-TGCA----ATTCGTTTTTtgtggaaaagaac
gi|11 : TAAGATCAAAATT--T-TGTGTCTG-CC-TT-AAA-CTCAACTGAGTG--C----CAC----TAT-GCT-C-TGAatca
gi|15 : tgtggcccttttcacaaaaaaaaaatctttcaagGATAAACATT--T-TGTCGCTT-T--CT-ATA-CTCAATTGACTG--C----AAT----TAT-GCC-CTTGAGTAAGAG-TGCA----A---ATT
gi|1 : tgtacaaaAAAATT-----GTGTCTG-CC-TT-ACA-CTCAACCGAGTG--C----CAC----TAT-GCC-C-TGAGTAAGAA-TGCA----G---GTTTTT-CACATGTTTATATACT---TTGAA-AGTTT-------TGCTCATT--------CATAAATAAATAATTAT----A-AATAAatatcac
gi|8 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcccttttcacgaaaaatcttacaactaaaatacaaaaaaaAAAACT--TAGGTTTCTGTC--TT-TTA-CTCGACAAAGTG--C----ATA----TAT-GTC-C-CGAGTAAGAA-AGCA----A---GTTTTATCACCCATGTGTATACTGTCT---ATAATTT-------TGCTCATTCAAAAATAAATAAAT---GAATTAT----A-AA
gi|13 : T-ATA-CTCAACTGAGTGCAC----TACATTGTAT-GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|12 : attactacaaaggataacagttttatcT-ATA-CTCAACTGAGTGCAC----TACATTGTAT-GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|7 : attactacaaaggataacagttttatc-ATA-TTCAACTGAGTG--C----AAC----TAT-GCT-C-TGTGTAAGAA-TGCA----A---GTTTTATCACCTGTGCGTCTTTT---T---A---TTT-------CGTTCA---GAAAA-ACATGAGTGA--AATTTT----AGAATGAAATGT--CAGTG---TTTTAAATTT-TTAA-TCTTAATCGT-AAGA-------TTTTGTTTGTGGAGA
gi|9 : cGCA----A---GTTTGTC-ATCTATTTATATACT---T---A-AGCTT-------TGCTCATTCAAAAAAAGATGAATGAAGATTTAT----A-AATGAATTGC--CG-TG---TTTTCAAATT-TTCA-TCTTAATCCT-AAGA-------TTT--TTTGTGAAAAG
gi|10 : TATAAACT---T---A-AGTTT-------TGCTCATTCAAAAACAGATAAATCAAGAATTAT----A-AATGGATTAC--TG-TA---CTTTGAAATT-TTAA-TCTTTATCGT-AAGA-------TTT--TTTGTGAAAAGGtg
gi|17 : atttttg-TA---TTTTGAAATT-TTCA-TCTTAATCGT-ACGA-------TTT--TTTGTGAAAAAG
gi|11 : gAAAATT-TTGA-TCTTACTTGA-AAGATTTT---TTT--TTTGTGAAAAGGggc
gi|4 : tgtggcAATT-TTGA-TCTTAGTCGT-AAGA-------TTT--TTTGTGAAAAGGgtgtctgccttaaactcaactgagtgccactatgctctga
gi|16 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcAATT-TTTAATCTTAATCGT-AACATTTTTTTTTT--TTTGTGAAAAGGtcatgtcagctttatacttaactgagagccactatgcctcgagtaagaatgcattgtagcttgtcatctattatgcagtgggtttgttattctgcttttaaaatatcaa
gi|1 : caTT-TGTA-TTTTAGTTGT-AAGA-------TTT--TTCGTGAAAAGGgccacagt
Alignments
lowQualScore : 111111111 222 1111 11 11111 11111 1111111
lowQualScore : 0 0 7 333333333 555 222 99999999 3 88 4 3333 888888 6 6 6 77777777 00 1 777 44444 6 99999 4 9999 4 5 0 3 1 3 3 5555555 7777 55
lowQualScore : . . . ......... ... ... ........ . .. . .... ...... . . . ........ .. . ... ..... . ..... . .... . . . . . . . ....... .... ..
lowQualScore : 1 5 3 111111111 888 000 66666666 1 55 0 1111 888888 2 2 7 99999999 00 7 888 11111 9 00000 4 4444 4 7 2 6 0 6 6 5555555 7777 00
consensus : TACGACTAAG-ATA--------AAAAT---TT-G-TGTCTGCC-TT--AT-ACTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAA-CAN-ATGAATGAA-GAATTAT----A-AATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
Reference ( family-1768 ) : TACGACTAAG-ATN--------AAAAT---TTCG-TGTCTGCC-TT--AT-ACTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTTTGCTCATTNAAAA-CAN-ATGAATGAA-GAATTAT----A-AATGAATTGCC-GTATTTTGAAATT-TTNA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|1 : TT-TGTA-TTTTAGTTGT-AAGA-------TT----T--TTCGTGAAAAGG
gi|1 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcTACAACTAAA-ATACAAAAAAAAAAAT---T--G-TGTCTGCC-TT--AC-ACTCAACCGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----G---GTTTTT-CACATGTTTATATACT---TTGAA-AGTTTTGCTCATT--------C-ATAAATAAA-TAATTAT----A-AATAAaaaaaaaattgtgtctgccttacactcaaccgagtgccactatgccctgagtaagaatgcaggtttttcacatgtttatatactttgaaagttttgctcattcataaataaataattataaataa
gi|10 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcccttttcacgaaaaatctTATAAACT---T---A-AGTTTTGCTCATTCAAAAACAG-ATAAATCAA-GAATTAT----A-AATGGATTACT-GTACTTTGAAATT-TTAA-TCTTTATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|11 : atttttgAAATT-TTGA-TCTTACTTGA-AAGA-------TTTTTTT--TTTGTGAAAAGG
gi|11 : tgtggcTAAG-ATC--------AAAAT---TTTG-TGTCTGCC-TT--AA-ACTCAACTGAGTG--CCAC----TAT------GCT-C-TGAtgtgtctgccttaaactcaactgagtgccactatgctctga
gi|12 : tgtggcccttttcacaaaaaaaaaatctttcaagTACTACAAAGGATA--------ACAGT---TT---TATCT--------AT-ACTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|13 : atTACTACAAAGGATA--------ACAGT---TT---TATCT--------AT-ACTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|14 : atTACTACAAAG-ATA--------AACAT---TT---TATCT--------AT-ACTCAACTGAGTG--C-AC----TACATTGTAGCC-CTTGAGTAAGAG-TGCA----ATTCGTTTTT
gi|15 : ACAAAG-ATA--------AACAT---TT---TGTC-GCT-TTCTAT-ACTCAATTGACTG--CAAT----TAT------GCC-CTTGAGTAAGAG-TGCA----A---ATTatca
gi|16 : tgtAAATT-TTTAATCTTAATCGT-AACATTTTTTTTT----T--TTTGTGAAAAGGatatcac
gi|17 : c-GTATTTTGAAATT-TTCA-TCTTAATCGT-ACGA-------TT----T--TTTGTGAAAAAGgccacagt
gi|2 : TACGACTAAG-ATC--------AAAAT---TTCG-TGTACACCATA--ATAACTTAACTGAGTG--CCAC----TAT------GCT-C--AAATAGAAA-TGCT----A---GCTTGT-CATTTTTGTATAAACT---T-----AGTTTTGCTATTTCAAAA-CAG-ATG-ATCAA-GAATTATAATGA-AATTAATTG-T-GTAATTTGAAATTGTTCC-TCTTAATCGT-ATGAT------TT----T--TTTGTGAAAggc
gi|3 : aaactaTACGACTAAG-ATG--------ACAAT---GTTG-TACCTGCC-TT--AT-ACTCAACGGAGTG--CAAC----TAT------GCC-C-TGAGTAAGAA-TGCA----T---GTTTTTC-ACCTATTTACATACC---T---A-AGTTCTGCTCATTCAAAA-CAA-ATTAATGAA-GAATTAT----A-AAAGAGTTACC-GTATTTTCAAATT-TTCA-TCTTATTCGTAAAGA-------GT----T--TTTGTGAAAAGGcag
gi|4 : tctTGAAATT-TTGA-TCTTAGTCGT-AAGA-------TT----T--TTTGTGAAAAGGgc
gi|4 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcTACGACTAAG-ATC--------AAAAT---TTCA-TGTCAGCT-TT--AT-ACTTAACTGAGAG--CCAC----TAT------GCC-T-CGAGTAAGAA-TGCATTGTA---GCTTGT-CATCTATTtgtcagctttatacttaactgagagccactatgcctcgagtaagaatgcattgtagcttgtcatctattatgcagtgggtttgttattctgcttttaaaatatcaa
gi|5 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcccttttcacaaaaaatctTACGACTATG-ATC--------AAAAT---TTTG-TGTCTGC--TT--AT-ACTCAACTGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTACTTATATACT---T---A-AGTTTTGCTCATTAAAAA-TAT-ATGAATGAA-GAATTAT----A-AATGAATTACC-ATATTTTAGAATT-TTCA-TCTTAATTGC-AAGA-------TT----T--TTTGTGAAAAGGatgcagtgggtttgttattctgcttttaaaatatcaa
gi|6 : TACGACTAAA-ATA--------AAAACAAATT-G-TTTCTGTC-TT--AT-ACTCATTTGATTG--CAAC----TAT------GTT-C-TGAGTAAGAC-T------------TTTGTCT-CCCATGTATTTGTT---T-----AGTTTT--------------AT-ATGAGTGAA-GAATTTT----A----GAATTGCa
gi|7 : atgtggccattttcacaaagtttct--AT-ATTCAACTGAGTG--CAAC----TAT------GCT-C-TGTGTAAGAA-TGCA----A---GTTTTATCACCTGTGCGTCTTTT---T---A---TTTCGTTCA--GAAAA--AC-ATGAGTGA---AATTTT----AGAATGAAATGTCAGTGTTTTAAATTT-TTAA-TCTTAATCGT-AAGA-------TT----TTGTTTGTGGAGAatcataaggtttttgtggaaaagaac
gi|8 : c--------AAAAC---TTAGGTTTCTGTC-TT--TT-ACTCGACAAAGTG--CATA----TAT------GTC-C-CGAGTAAGAA-AGCA----A---GTTTTATCACCCATGTGTATACTGTCT---ATAATTTTGCTCATTCAAAA-----ATAAATAAATGAATTAT----A-AA
gi|9 : GCA----A---GTTTGTC-ATCTATTTATATACT---T---A-AGCTTTGCTCATTCAAAA-AAAGATGAATGAA-GATTTAT----A-AATGAATTGCC-GTGTTTTCAAATT-TTCA-TCTTAATCCT-AAGA-------TT----T--TTTGTGAAAAG
Alignments
lowQualScore : 11111111 222 1111 11 111111 11111 111111 1111111
lowQualScore : 0 0 7 11111111 999 555 6666666 3 3 88 4 3333 888888 6 6 6 77777777 00 1 777 000000 0 77777 4 000000 66 0 3 2 3 3 5555555 7777 55
lowQualScore : . . . ........ ... ... ....... . . .. . .... ...... . . . ........ .. . ... ...... . ..... . ...... .. . . . . . ....... .... ..
lowQualScore : 1 5 3 99999999 222 999 2222222 1 1 55 0 1111 888888 2 2 7 99999999 00 7 888 666666 8 88888 4 333333 77 2 6 0 6 6 5555555 7777 00
consensus : TACGACTAAG-ATA-------AAAAT---TT--GTGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAA-CAN-ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
Reference ( family-1768 ) : TACGACTAAG-ATA-------AAAAT---TT--GTGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAA-CAN-ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|1 : TT-TGTA-TTTTAGTTGT-AAGA-------TT----T--TTCGTGAAAAGG
gi|1 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcTACAACTAAA-ATACAAAAAAAAAAA---TT--GTGTCTGCCTT--A-CA-CTCAACCGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----G---GTTTTT-CACATGTTTATATACT---TTGAA-AGTTTTGCTCATTC---------ATAAATAAA-TAATTATA-A----ATAAaaaaaaaattgtgtctgccttacactcaaccgagtgccactatgccctgagtaagaatgcaggtttttcacatgtttatatactttgaaagttttgctcattcataaataaataattataaataa
gi|10 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcccttttcacgaaaaatctTATAAACT---T---A-AGTTTTGCTCATTCAAAAACAG-ATAAATCAA-GAATTATA-A----ATGGATTACT-GTACTTTGAAATT-TTAA-TCTTTATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|11 : atttttgAAATT-TTGA-TCTTACTTGA-AAGA-------TTTTTTT--TTTGTGAAAAGG
gi|11 : tgtggcTAAG-ATC-------AAAAT---TTT-GTGTCTGCCTT--A-AA-CTCAACTGAGTG--CCAC----TAT------GCT-C-TGAtgtgtctgccttaaactcaactgagtgccactatgctctga
gi|12 : tgtggcccttttcacaaaaaaaaaatctttcaagTACTACAAAGGATA-------ACAGT---TT---TATCT-------A-TA-CTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|13 : atTACTACAAAGGATA-------ACAGT---TT---TATCT-------A-TA-CTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|14 : atTACTACAAAG-ATA-------AACAT---TT---TATCT-------A-TA-CTCAACTGAGTG--C-AC----TACATTGTAGCC-CTTGAGTAAGAG-TGCA----ATTCGTTTTT
gi|15 : ACAAAG-ATA-------AACAT---TT---TGTC-GCTTTCTA-TA-CTCAATTGACTG--CAAT----TAT------GCC-CTTGAGTAAGAG-TGCA----A---ATTatca
gi|16 : tgtAAATT-TTTAATCTTAATCGT-AACATTTTTTTTT----T--TTTGTGAAAAGGatatcac
gi|17 : c-GTATTTTGAAATT-TTCA-TCTTAATCGT-ACGA-------TT----T--TTTGTGAAAAAGgccacagt
gi|2 : TACGACTAAG-ATC-------AAAAT---TTC-GTGTACACCAT--AATAACTTAACTGAGTG--CCAC----TAT------GCT-C--AAATAGAAA-TGCT----A---GCTTGTC-ATTTTTGTATAAACT---T---A--GTTTTGCTATTTCAAAA-CAG-ATGA-TCAA-GAATTATA-ATGAAATTAATTGT--GTAATTTGAAATTGTTCC-TCTTAATCGT-ATGAT------TT----T--TTTGTGAAAggc
gi|3 : aaactaTACGACTAAG-ATG-------ACAATG--TT--GTACCTGCCTT--A-TA-CTCAACGGAGTG--CAAC----TAT------GCC-C-TGAGTAAGAA-TGCA----T---GTTTTTC-ACCTATTTACATACC---T---A-AGTTCTGCTCATTCAAAA-CAA-ATTAATGAA-GAATTATA-A----AAGAGTTACC-GTATTTTCAAATT-TTCA-TCTTATTCGTAAAGA-------GT----T--TTTGTGAAAAGGcag
gi|4 : tctTGAAATT-TTGA-TCTTAGTCGT-AAGA-------TT----T--TTTGTGAAAAGGgc
gi|4 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcTACGACTAAG-ATC-------AAAAT---TTC-ATGTCAGCTTT--A-TA-CTTAACTGAGAG--CCAC----TAT------GCC-T-CGAGTAAGAA-TGCATTGTA---GCTTGT-CATCTATTtgtcagctttatacttaactgagagccactatgcctcgagtaagaatgcattgtagcttgtcatctattatgcagtgggtttgttattctgcttttaaaatatcaa
gi|5 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcccttttcacaaaaaatctTACGACTATG-ATC-------AAAAT---TTT-GTGTCTGC-TT--A-TA-CTCAACTGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTACTTATATACT---T---A-AGTTTTGCTCATTAAAAA-TAT-ATGAATGAA-GAATTATA-A----ATGAATTACC-ATATTTTAGAATT-TTCA-TCTTAATTGC-AAGA-------TT----T--TTTGTGAAAAGGatgcagtgggtttgttattctgcttttaaaatatcaa
gi|6 : TACGACTAAA-ATA-------AAAACAAATT--GTTTCTGTCTT--A-TA-CTCATTTGATTG--CAAC----TAT------GTT-C-TGAGTAAGAC-T------------TTTGTCT-CCCATGTATTTGTT---T-----AGTTTT--------------AT-ATGAGTGAA-GAATTTTA--------GAATTGCa
gi|7 : atgtggccattttcacaaagtttct--A-TA-TTCAACTGAGTG--CAAC----TAT------GCT-C-TGTGTAAGAA-TGCA----A---GTTTTATCACCTGTGCGTCTTTT---T---A---TTTCGTTCA---GAAA-AAC-ATGAGTGA---AATTTTAGA----ATGAAATGTCAGTGTTTTAAATTT-TTAA-TCTTAATCGT-AAGA-------TT----TTGTTTGTGGAGAatcataaggtttttgtggaaaagaac
gi|8 : c-------AAAAC---TTAGGTTTCTGTCTT--T-TA-CTCGACAAAGTG--CATA----TAT------GTC-C-CGAGTAAGAA-AGCA----A---GTTTTATCACCCATGTGTATACTGTCT---ATAATTTTGCTCATTCAAAA-----ATAAATAAATGAATTATA-A----A
gi|9 : GCA----A---GTTTGTC-ATCTATTTATATACT---T---A-AGCTTTGCTCATTCAAAA-AAAGATGAATGAA-GATTTATA-A----ATGAATTGCC-GTGTTTTCAAATT-TTCA-TCTTAATCCT-AAGA-------TT----T--TTTGTGAAAAG
Alignments
lowQualScore : 11111111 222 1111 11 111111 11111 111111 1111111
lowQualScore : 0 0 7 11111111 999 555 6666666 3 3 88 4 3333 888888 6 6 6 77777777 00 1 777 000000 0 77777 4 000000 66 0 3 2 3 3 5555555 7777 55
lowQualScore : . . . ........ ... ... ....... . . .. . .... ...... . . . ........ .. . ... ...... . ..... . ...... .. . . . . . ....... .... ..
lowQualScore : 1 5 3 99999999 222 999 2222222 1 1 55 0 1111 888888 2 2 7 99999999 00 7 888 666666 8 88888 4 333333 77 2 6 0 6 6 5555555 7777 00
consensus : TACGACTAAG-ATA-------AAAAT---TT--GTGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAA-CAN-ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
Reference ( family-1768 ) : TACGACTAAG-ATA-------AAAAT---TT--GTGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAA-CAN-ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|1 : TT-TGTA-TTTTAGTTGT-AAGA-------TT----T--TTCGTGAAAAGG
gi|1 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcTACAACTAAA-ATACAAAAAAAAAAA---TT--GTGTCTGCCTT--A-CA-CTCAACCGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----G---GTTTTT-CACATGTTTATATACT---TTGAA-AGTTTTGCTCATTC---------ATAAATAAA-TAATTATA-A----ATAAaaaaaaaattgtgtctgccttacactcaaccgagtgccactatgccctgagtaagaatgcaggtttttcacatgtttatatactttgaaagttttgctcattcataaataaataattataaataa
gi|10 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcccttttcacgaaaaatctTATAAACT---T---A-AGTTTTGCTCATTCAAAAACAG-ATAAATCAA-GAATTATA-A----ATGGATTACT-GTACTTTGAAATT-TTAA-TCTTTATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|11 : atttttgAAATT-TTGA-TCTTACTTGA-AAGA-------TTTTTTT--TTTGTGAAAAGG
gi|11 : tgtggcTAAG-ATC-------AAAAT---TTT-GTGTCTGCCTT--A-AA-CTCAACTGAGTG--CCAC----TAT------GCT-C-TGAtgtgtctgccttaaactcaactgagtgccactatgctctga
gi|12 : tgtggcccttttcacaaaaaaaaaatctttcaagTACTACAAAGGATA-------ACAGT---TT---TATCT-------A-TA-CTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|13 : atTACTACAAAGGATA-------ACAGT---TT---TATCT-------A-TA-CTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTATCAC
gi|14 : atTACTACAAAG-ATA-------AACAT---TT---TATCT-------A-TA-CTCAACTGAGTG--C-AC----TACATTGTAGCC-CTTGAGTAAGAG-TGCA----ATTCGTTTTT
gi|15 : ACAAAG-ATA-------AACAT---TT---TGTC-GCTTTCTA-TA-CTCAATTGACTG--CAAT----TAT------GCC-CTTGAGTAAGAG-TGCA----A---ATTatca
gi|16 : tgtAAATT-TTTAATCTTAATCGT-AACATTTTTTTTT----T--TTTGTGAAAAGGatatcac
gi|17 : c-GTATTTTGAAATT-TTCA-TCTTAATCGT-ACGA-------TT----T--TTTGTGAAAAAGgccacagt
gi|2 : TACGACTAAG-ATC-------AAAAT---TTC-GTGTACACCAT--AATAACTTAACTGAGTG--CCAC----TAT------GCT-C--AAATAGAAA-TGCT----A---GCTTGTC-ATTTTTGTATAAACT---T---A--GTTTTGCTATTTCAAAA-CAG-ATGA-TCAA-GAATTATA-ATGAAATTAATTGT--GTAATTTGAAATTGTTCC-TCTTAATCGT-ATGAT------TT----T--TTTGTGAAAggc
gi|3 : aaactaTACGACTAAG-ATG-------ACAATG--TT--GTACCTGCCTT--A-TA-CTCAACGGAGTG--CAAC----TAT------GCC-C-TGAGTAAGAA-TGCA----T---GTTTTTC-ACCTATTTACATACC---T---A-AGTTCTGCTCATTCAAAA-CAA-ATTAATGAA-GAATTATA-A----AAGAGTTACC-GTATTTTCAAATT-TTCA-TCTTATTCGTAAAGA-------GT----T--TTTGTGAAAAGGcag
gi|4 : tctTGAAATT-TTGA-TCTTAGTCGT-AAGA-------TT----T--TTTGTGAAAAGGgc
gi|4 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcTACGACTAAG-ATC-------AAAAT---TTC-ATGTCAGCTTT--A-TA-CTTAACTGAGAG--CCAC----TAT------GCC-T-CGAGTAAGAA-TGCATTGTA---GCTTGT-CATCTATTtgtcagctttatacttaactgagagccactatgcctcgagtaagaatgcattgtagcttgtcatctattatgcagtgggtttgttattctgcttttaaaatatcaa
gi|5 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcccttttcacaaaaaatctTACGACTATG-ATC-------AAAAT---TTT-GTGTCTGC-TT--A-TA-CTCAACTGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTACTTATATACT---T---A-AGTTTTGCTCATTAAAAA-TAT-ATGAATGAA-GAATTATA-A----ATGAATTACC-ATATTTTAGAATT-TTCA-TCTTAATTGC-AAGA-------TT----T--TTTGTGAAAAGGatgcagtgggtttgttattctgcttttaaaatatcaa
gi|6 : TACGACTAAA-ATA-------AAAACAAATT--GTTTCTGTCTT--A-TA-CTCATTTGATTG--CAAC----TAT------GTT-C-TGAGTAAGAC-T------------TTTGTCT-CCCATGTATTTGTT---T-----AGTTTT--------------AT-ATGAGTGAA-GAATTTTA--------GAATTGCa
gi|7 : atgtggccattttcacaaagtttct--A-TA-TTCAACTGAGTG--CAAC----TAT------GCT-C-TGTGTAAGAA-TGCA----A---GTTTTATCACCTGTGCGTCTTTT---T---A---TTTCGTTCA---GAAA-AAC-ATGAGTGA---AATTTTAGA----ATGAAATGTCAGTGTTTTAAATTT-TTAA-TCTTAATCGT-AAGA-------TT----TTGTTTGTGGAGAatcataaggtttttgtggaaaagaac
gi|8 : c-------AAAAC---TTAGGTTTCTGTCTT--T-TA-CTCGACAAAGTG--CATA----TAT------GTC-C-CGAGTAAGAA-AGCA----A---GTTTTATCACCCATGTGTATACTGTCT---ATAATTTTGCTCATTCAAAA-----ATAAATAAATGAATTATA-A----A
gi|9 : GCA----A---GTTTGTC-ATCTATTTATATACT---T---A-AGCTTTGCTCATTCAAAA-AAAGATGAATGAA-GATTTATA-A----ATGAATTGCC-GTGTTTTCAAATT-TTCA-TCTTAATCCT-AAGA-------TT----T--TTTGTGAAAAG
blockSeqs : G C AAA AGG GCTTTCT A A CA C ATTG ATTGTA T T G TTGTA TC G GTC ATA ACAG T ATGAA CA G A A A TTTTTTT TTTT TG
blockSeqs : G A G TG GCCTT . . CA T ATTG . T T G ATTC TC T . AA AAAG . GA C . G . . T . .
blockSeqs : . A . CG ACCAT . . . T . . . . . A CC T . AA CAG . A C . T . . . . .
blockSeqs : . A . CA GCCTT . . . A . . . . . A CT T . AA CAA . A C . C . . . . .
blockSeqs : . A . TG GCTTT . . . C . . . . . A TC G . AA TAT . A . . C . . . . .
blockSeqs : . C . G GTCTT . . . A . . . . . A TC G . A AAC . A . C . . . . .
blockSeqs : . G . G GTCTT . . . C . . . . . T C G . A AT . A . G . . . . .
blockSeqs : . C . . GCTT . . . C . . . . . A C T . A . . . . C . . . . .
blockSeqs : . C . . . . . . A . . . . . A C . A . . . . .
blockSeqs : . A . . . . . . A . . . . . A C . C . . . . .
blockSeqs : . . . . . . A . . . . . A
blockSeqs : . . . . . . . . .
blockSeqCons : N******* G** TC AA**** NAN**
originalCons : TACGACTAAG-ATA-------AAAAT---TT--GTGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTCCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAA-CAN-ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
finalCons : TACGACTAAG-ATN-------AAAAT---TTG--TGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTTTCACCTATTTATATACT---TAA----GTTTTGCTCATTCAAAANAN--ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
Alignments
lowQualScore : 11111111 222 1111 11 111111 11111 111111 1111111
lowQualScore : 0 0 7 11111111 999 555 6666666 3 3 88 4 3333 888888 6 6 6 77777777 11 1 777 000000 0 77777 4 000000 66 0 3 2 3 3 5555555 7777 55
lowQualScore : . . . ........ ... ... ....... . . .. . .... ...... . . . ........ .. . ... ...... . ..... . ...... .. . . . . . ....... .... ..
lowQualScore : 1 5 3 88888888 222 999 2222222 1 1 55 0 1111 888888 2 2 7 99999999 55 7 888 666666 8 88888 4 333333 77 2 6 0 6 6 5555555 7777 00
consensus : TACGACTAAG-ATA-------AAAAT---TT--GTGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTN-TCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAA--AN-ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
Reference ( family-1768 ) : TACGACTAAG-ATN-------AAAAT---TT--GTGTCTGCCTT--A-TA-CTCAACTGAGTG--CNAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTT-TCACCTATTTATATACT---T---A-AGTTTTGCTCATTCAAAAN-AN-ATGAATGAA-GAATTATA-A----ATGAATTGCC-GTATTTTGAAATT-TTCA-TCTTAATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|1 : TT-TGTA-TTTTAGTTGT-AAGA-------TT----T--TTCGTGAAAAGG
gi|1 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcTACAACTAAA-ATACAAAAAAAAAAA---TT--GTGTCTGCCTT--A-CA-CTCAACCGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----G---G-TTTT-TCACATGTTTATATACT---TTGAA-AGTTTTGCTCATTC---------ATAAATAAA-TAATTATA-A----ATAAaaaaaaaattgtgtctgccttacactcaaccgagtgccactatgccctgagtaagaatgcaggtttttcacatgtttatatactttgaaagttttgctcattcataaataaataattataaataa
gi|10 : catacgcataatgagcacattattaccaatcatatttagaattacagagatatacaaatatggcccttttcacgaaaaatctTATAAACT---T---A-AGTTTTGCTCATTCAAAAACAG-ATAAATCAA-GAATTATA-A----ATGGATTACT-GTACTTTGAAATT-TTAA-TCTTTATCGT-AAGA-------TT----T--TTTGTGAAAAGG
gi|11 : atttttgAAATT-TTGA-TCTTACTTGA-AAGA-------TTTTTTT--TTTGTGAAAAGG
gi|11 : tgtggcTAAG-ATC-------AAAAT---TTT-GTGTCTGCCTT--A-AA-CTCAACTGAGTG--CCAC----TAT------GCT-C-TGAtgtgtctgccttaaactcaactgagtgccactatgctctga
gi|12 : tgtggcccttttcacaaaaaaaaaatctttcaagTACTACAAAGGATA-------ACAGT---TT---TATCT-------A-TA-CTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTA-TCAC
gi|13 : atTACTACAAAGGATA-------ACAGT---TT---TATCT-------A-TA-CTCAACTGAGTGCACTACATTGTAT------GCCTT-TGAGTAAGAAGTGCA----A---GTTTTA-TCAC
gi|14 : atTACTACAAAG-ATA-------AACAT---TT---TATCT-------A-TA-CTCAACTGAGTG--C-AC----TACATTGTAGCC-CTTGAGTAAGAG-TGCA----ATTCGTTTTTATCA
gi|15 : ACAAAG-ATA-------AACAT---TT---TGTC-GCTTTCTA-TA-CTCAATTGACTG--CAAT----TAT------GCC-CTTGAGTAAGAG-TGCA----A---ATTATA-TCAC
gi|16 : tgtAAATT-TTTAATCTTAATCGT-AACATTTTTTTTT----T--TTTGTGAAAAGG
gi|17 : c-GTATTTTGAAATT-TTCA-TCTTAATCGT-ACGA-------TT----T--TTTGTGAAAAAGgccacagt
gi|2 : TACGACTAAG-ATC-------AAAAT---TTC-GTGTACACCAT--AATAACTTAACTGAGTG--CCAC----TAT------GCT-C--AAATAGAAA-TGCT----A---GCTTGT--CATTTTTGTATAAACT---T---A--GTTTTGCTATTTCAAAAC-AG-ATGA-TCAA-GAATTATA-ATGAAATTAATTGT--GTAATTTGAAATTGTTCC-TCTTAATCGT-ATGAT------TT----T--TTTGTGAAAggc
gi|3 : aaactaTACGACTAAG-ATG-------ACAATG--TT--GTACCTGCCTT--A-TA-CTCAACGGAGTG--CAAC----TAT------GCC-C-TGAGTAAGAA-TGCA----T---GTTTT--TCACCTATTTACATACC---T---A-AGTTCTGCTCATTCAAAAC-AA-ATTAATGAA-GAATTATA-A----AAGAGTTACC-GTATTTTCAAATT-TTCA-TCTTATTCGTAAAGA-------GT----T--TTTGTGAAAAGGcag
gi|4 : tctTGAAATT-TTGA-TCTTAGTCGT-AAGA-------TT----T--TTTGTGAAAAGGgc
gi|4 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcTACGACTAAG-ATC-------AAAAT---TTC-ATGTCAGCTTT--A-TA-CTTAACTGAGAG--CCAC----TAT------GCC-T-CGAGTAAGAA-TGCATTGTA---G-CTTG-TCATCTATTtgtcagctttatacttaactgagagccactatgcctcgagtaagaatgcattgtagcttgtcatctattatgcagtgggtttgttattctgcttttaaaatatcaa
gi|5 : cacacacacacatgcagccattataattaatgaatcaaaggtcagtggcccttttcacaaaaaatctTACGACTATG-ATC-------AAAAT---TTT-GTGTCTGC-TT--A-TA-CTCAACTGAGTG--CCAC----TAT------GCC-C-TGAGTAAGAA-TGCA----A---GTTTTT-CCACCTACTTATATACT---T---A-AGTTTTGCTCATTAAAAAT-AT-ATGAATGAA-GAATTATA-A----ATGAATTACC-ATATTTTAGAATT-TTCA-TCTTAATTGC-AAGA-------TT----T--TTTGTGAAAAGGatgcagtgggtttgttattctgcttttaaaatatcaa
gi|6 : TACGACTAAA-ATA-------AAAACAAATT--GTTTCTGTCTT--A-TA-CTCATTTGATTG--CAAC----TAT------GTT-C-TGAGTAAGA----C----------TTTTG-TCTCCCATGTATTTGTT---T-----AGTTTT--------------AT-ATGAGTGAA-GAATTTTA--------GAATTGCa
gi|7 : atgtggccattttcacaaagtttct--A-TA-TTCAACTGAGTG--CAAC----TAT------GCT-C-TGTGTAAGAA-TGCA----A---GTTTTA-TCACCTGTGCGTCTTTT---T---A---TTTCGTTCA---GAAAA-AC-ATGAGTGA---AATTTTAGA----ATGAAATGTCAGTGTTTTAAATTT-TTAA-TCTTAATCGT-AAGA-------TT----TTGTTTGTGGAGAatcataaggtttttgtggaaaagaac
gi|8 : c-------AAAAC---TTAGGTTTCTGTCTT--T-TA-CTCGACAAAGTG--CATA----TAT------GTC-C-CGAGTAAGAA-AGCA----A---GTTTTA-TCACCCATGTGTATACTGTCT---ATAATTTTGCTCATTCAAAA-----ATAAATAAATGAATTATA-A----A
gi|9 : GCA----A---GTTTGT--CATCTATTTATATACT---T---A-AGCTTTGCTCATTCAAAAA-AAGATGAATGAA-GATTTATA-A----ATGAATTGCC-GTGTTTTCAAATT-TTCA-TCTTAATCCT-AAGA-------TT----T--TTTGTGAAAAG