lowQualScore : 111111 4444444444444444444444444444444444 33333333 1 1111 1 666666666666666666666666666666666666 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222222 1111
lowQualScore : 2 666666 8 7777777777777777777777777777777777 2 4 0 55555555 55 666 3 55 0 3 3 3 8888 0 66 3 999999999999999999999999999999999999 3 77 3 55 1 3 66 7 1 66 3 555 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66 9999999999 66 0 8 9999 9999
lowQualScore : . ...... . .................................. . . . ........ .. ... . .. . . . . .... . .. . .................................... . .. . .. . . .. . . .. . ... ..................................................................................... .. .......... .. . . .... ....
lowQualScore : 2 888888 0 2222222222222222222222222222222222 7 7 8 77777777 55 444 1 00 5 8 6 6 1111 4 00 4 000000000000000000000000000000000000 8 55 6 00 5 6 44 0 2 11 6 666 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 7777777777 99 7 4 5555 3333
consensus : TAAGGACA--TAGGATA-CCC--A--------AACAAAT-TTA----------TTACAGAATTTTGTAAA--A-NT--AT--TTGTAAATGTTTTAA---TAT--TGCTAAAAACCCATATTT-AC-CAC-AAAATTTTCC-TNTGAAACCA-C-TTTA-A---TA-TTTTGC----G---NT-ATT-CACAAATCTTTA-C-TT--GAAAATTCA-ATGGAAAAACGTTACCCAA-AA-ATTGAAAT-CC--T-T-------CA-------AAANN---TC-TTTTTATTGGTGCA-TTC-CA------TA---ATGG-----CC-------GAT--TTA--C-A-----TG--TTGTTTGATCAA--ANAATA--GAAAA
Reference ( gi|5 ) : TAAGGATA--TAGCACA-CCC--A--------AATAAAT-TTA----------TCACAGAATTTTGTAAA--AAGT--AT--TTGTAAATGTTTTAA---TGT--TGCTAGAAACCCATATTT-AC-CAC-AGAATTTTCT-TCTGAAACCA-A-TTCA-A---TG-TTTTGC----T---AT-ACT-CACAAATCTTTG-C-TT--GAAAGTTCA-ATGGAAAAACATTACCTAA-AA-ATTGAAAT-CC--T-C-------CA-------AAAAA---TC-TTTTTATTGGTATATTTTTCA------TA---ATGG-----CT-------GAT--TTA--C-A-----TG--TTGTTTTATCAA--GAAATA--GGAAA
gi|2 : TAAGGACACGTGATATA-CCCCAA--------AACAAAT-T-G----------TTATTGAATGTTGTAGA--AC-T--AT--CTATAAATGTTTCAT---TGTACTGTTAAAAGCTCATATCT-AT-CATTAAACTTTTCC-TAGGAAACCA-C-TTTT-----TC-TTTTGC--------AT-TCTTCACTAATCTTTA-TGTG--GAAAAATCATACATAGAAACAATACCCAA-AA-ATATAAAT-TC--T-T-------CA-------GAA-------------ATTGGCGC-------------------ATGA-----AT-------GAT--TGA--C-A---------TTGTTTAATCAA--ATAATA--AAAAA
gi|15 : tTAAAGATA--TTGGATG-TCC--A--------AA-AAGT-TTG----------TTACAGAGCTTTGTAAA--AAGT--AC--ATGTAAATGTTTTGA---TAT--TGCTAAAAAtaatacacgtaaacgaagtaaaatcttattccatttgatacgtctaaaatct
gi|14 : TAAAGACA--TAAGATATCCC--A--------TGGAAAA-CGA----------T-ATAAAATTTTGTAAA--A-TT--AG--TTGTAAATGTTCC-----TGT--------AAACCCTTATTT-AC-CAC-AGAATTTTCC-TTT
gi|9 : AGGACA--TAGGACA-CCT--ATTGTAAAAAAAAAAG-TTAATTGTAACGGTTATAGAATATTGTAAA--ACA---AT--TTGT------TTTAA---TAT--TGCTAAAAATCCATTTTC-AC--AC-AACATATTTC-TATGAAATCA-CCTTT------TG-TTT-GC----A---TT-ATT-CACAAATATTTA-C-TT--GAAAATTCA-ATGGGAAAAC--TATCCAA-AA-ATTGGAAT-AC--T-T-------TA-------A
gi|7 : ttACA-ACC--A--------AGCA--T-TGA----------TTACA--------TAAG--AAGA--AT--TTGTAAAA---CTAAAAGTAC--TACTA-ACACCAATATTT-AC-CAC------------TCTATATCC----TTCA-----T--TTTTGC--------AT-TCTTCACAAAT--TTGAC-TT--GAATATCCA-ATGGTAAAACATTACCCAATAA-GATAAAAT-TC--T-T-------CA-------AGACA---GC-TTTATTTTGATACAGTTT
gi|10 : gttattcacatcat--A--------AACAAAT-T-A----------TTACAGAATTTTATTAA--ATAA--AT--TTGTAAATGTTTTGA---TAC--TTCTA-AAACCCATTTTT--C-TAC-A------TCT-TT----AC-----------------TTTTGCAC--G---AT-AG---ACAAATCTTTA-C-TT--TAAA-TTCA-ATGACAAAACGTTGCCCCA-AA-ACTGCAATCCC--T-C-------TA-------AAACA---TC-GTTTTATAAATGCATTTCACG------CATGGATGG-----TT-------AAT--TCA--atgtattaaagatcacaatacatgtacattgttgtctgat
gi|1 : AAATGTTA----------T---AGA-TTTTGTAAA--A-TT--AT--TTGCAAATGTTTTAA---TAT--TTCGAAAACCTCATATGT-AC-CAC---AATTT--T-TATGAACCCA-C-CTTA-AATTTACTTTTGCA---TTTAAT-ATT-CACATATATTTA-C-TT--GAA--T------------------CTCAA-AA-ATTGAAGT-CTTGT-CGTTGGTGCATTCCTGTGGAAG---TC-TTTTTATTGCTGCA--TTTCATGTAT-TA---ATGA-----CC-------AAT--TTA--C-AG----TG--Taa
gi|16 : cAAATGTTA----------T---AGA-TTTTGTAAA--A-TT--AT--TTGCA--TGTTTTAA---TAT--TTGTAAAACCCTATATGT-AC-CAC-aatagactattccacgtaaacacagaacatcctactttatttgatgtgtccaaaatcttgggtatccaatgactaagttttgaaaaacacgaa
gi|6 : -TTAG---------TTATGGAATTTTGTAAACTAAATTAATAATTATAAGTGTTTTAA---TAA--TGCTGAAAATTCATATTT-AC-TTC-AAAATTTCCCCTATGATACCA-G-TT-----------TTTGGGGGAT---A--ATT-TTCAAATCTTTA-A-TC--AAAAAGTCA-TGGGAGAAACATGACCCAA-AC-AATAAAAT-CT--T-T-------C---------AAGC---TT-CTTTTAACGCTGCA--TTTCACTGAACTA---ATGA-----CTACTCGTAAAT--TTA--CAA-----TG--TT------TGAA--AAAATAATGGAAA
gi|4 : aaaagaatattcAGAATGCTGCAAA---------T--TTGTAAATGTTCTGA---TAT--TGCT-TAAACCCATATCT-AAACAC-CAAATTTCCT-TGTG-----------CA-A---TG-CTTTTT----T---TT-CAT-CATAAATCTTTA-C-TT--GAAAATTTA-ATTTAAAAACGTTA----------------------T-T-------CA-------AA---------TTTTTATTGGTACA--GTTCA------TA---TTTGATTAACT-------GAT--TTG--C-A-----TGGTTCTTTTTATCAAATGAAA-----GAAA
gi|12 : aggacatggaatacaaaTTAAA---TAT--TGCTAAAAACACATATTTTAC-TAC-AAAATTTTCC-TGTGAAACCA-C-CTTT-A---TA--TTTGC----G---TT-ATT-CACATATTTatttcacctagatacagcaacttcctttgatgtgtccagaatcttgattatactataacct
gi|8 : TATTT-AT-CGT-ACTATTGTCA-T-TGAAAACATC-TTTA-A---T---TTTGC----G---TT-ATT-CACAATTCTGTG-C-TTTAAAAAGTTCA-ATGGAAAAAC-TT-CCT-A-AA-TTTGGAAC-C-------------------------------C-TTTTCATTGGTGCA------A------TA------------CC-------GAT--TTATTC-AAATGCTG--TTGTTTGATC-----AAATA--AAAAAaacaacaacacaaaaactccttcaaaaact
gi|3 : TTTTCT-CATGATACCACA-TGCATC---TA-TTTTGC----A---TT-TTT-CACAAATGTTAA-T-TT--ACAA-TTCA-ATG-------------TAA-AA--TTGAAAT-CT--TTC-------CA-------AAATG---TCGTTTTTATTTGTGCATTTC----------A---ATGA-----CC-------GATCGTTA--T-------TG--TTGTTTTATCAA--ATGATA--GAAAAgtcccaggtaaaatagcaaagtccttcttcaattgatgtgtccataatttaagttattctat
gi|17 : gaacatagtatacaaaccaagctataaagtttaaaacgttgaatgtaggtttcttatgctccatattTGAAACCA-C-TTTA-A---T--TTTTG-----T---ATTATT-CACAAAACTTTT-C-TT--GAAAATTCA-ATGccccaccaaaacacggcacattttccacaatttgatgcgtccaaaaatcgtggatatcctttgatcttgatgaggcatgaa
gi|18 : ctaTGAAACCA-T-TTTT-----TA-TTTTGC----A---TT-ATT-TATAAATATTTA-C-TT--GAAAATa
gi|13 : ttctaTCA-ATGGAAAAACATTACCCCA-AA-ACTGAAAT-CC--T-A-------CA-------AAAAAATGTA-TTTTCAATGGTAGATTTCATA------TAGCGAAGG-----TC-------AAT--TTA--T-AT----TA--CTGTTGGATCAc
gi|11 : AACATTACCCAA-AATAT--AAAT-TA--T-T-------CA-------AAAACT--TC-TCTTTGTTCGTGT--------------TA---ATGG-----CC-------AAT--TTA--C-AC----TG--TTGTTTGATTAA--TTAATA--GAAAA
Alignments
lowQualScore : 44444444444444444444444444444444444444 1111111111 11111 44444444444 1111111 1 3333333333333333333333333333 666666666666666666666666666666666666666666 222222222
lowQualScore : 77777777777777777777777777777777777777 2 999999 1 4444444444 666666 44 0 9 4444 22222 3 4 3 22222222222 1111111 3 3 0 444 3 44 2 33 0 3 3 0 2 3 9999999999999999999999999999 222222222222222222222222222222222222222222 55 55 888888888 0 1 1
lowQualScore : ...................................... . ...... . .......... ...... .. . . .... ..... . . . ........... ....... . . . ... . .. . .. . . . . . . ............................ .......................................... .. .. ......... . . .
lowQualScore : 55555555555555555555555555555555555555 2 666666 7 8888888888 111111 22 2 0 8888 00000 1 8 1 33333333333 3333333 5 1 2 777 1 22 8 66 4 1 1 3 3 3 9999999999999999999999999999 555555555555555555555555555555555555555555 00 55 999999999 1 0 7
consensus : TAAGGACATAGGATA---C--CC--------AAA-CAAATTTA----------TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-CTTTAA---T----TTTTGCATT----ATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
Reference ( family-1693 ) : TAAGGACATAGGATA---C--CC--------AAA-CAAATTTA----------TTACA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTNTGAAACCA-CTTTAA---T--A-TTTTGCGNT----ATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACGTTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANNT-C-TTTTTATTGGTGCA--TTCCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAANAATAGAAAA
gi|1 : -CAAAT--G----------TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCAAATGTTTTA--ATATTTCGAAAACCTCATATGT-AC-CAC-AA--TTT-T--TATGAACCCA-CCTTAAATTT--ACTTTTGCATTTAATATTCACATATATTTAC-TTGAA---------------------T-CTCAA-AA-ATTGAAGTCTTGTC---GTTGGTGCATTCCTGTGGAAGT-C-TTTTTATTGCTGCA--TTTCATGTAT-TA-----ATGA-----C----CA------AT--TTA--CAG----TG--T
gi|10 : --------AAA-CAAATT-A----------TTACA------GAATTTTATTAA-------AT-AAATT---TGTAAATGTTTTG--ATACTTCTAAAA-CCCATTTTT--C-TAC-A------------T--------CTTTAC---T-----TTTGCACG----ATAGACAAATCTTTAC-TTTAAA---TTCA-ATGACAAAACGTTGCCCCA-AA-ACTGCAATCCC-TCT--A---------------AAACAT-C-GTTTTATAAATGCA--TTTCA------CGC----ATGG-----A----TG------GT--Taatagactattccacgtaaacacagaacatcctactttatttgatgtgtccaaaatcttgggtatccaatgactaagttttgaaaaacacgaa
gi|11 : AACATTACCCAA-AATAT--AAATTAT-TC---A---------------AAAACTTC-TCTTTGTTCGTGT--------------TA-----ATGG-----C----CA------AT--TTA--CAC----TG--TTGTTTGATTAATTAATAGAAAAaattcaaa
gi|12 : atgTTAA--ATATTGCTAAAAACACATATTTTAC-TAC-AAAATTT-TCCTGTGAAACCA-CCTTTA---T--A--TTTGCGTT----ATTCACA------TAT-TTAACAA----CA-ACACAAAAAC-TCCTTCAA-AA-ACTtctccagtaatctcagtaaagttctacttcttttgatgagtccaaaatcttcggtattcgat
gi|13 : TCA-ATGGAAAAACATTACCCCA-AA-ACTGAAATCCT-ACAAAA---------------AAATGT-A-TTTTCAATGGTAGA--TTTCA------TATAGCGAAGG-----T----CA------AT--TTA--TAT----TA--CTGTTGGATCA
gi|14 : TAAAGACATAAGATA---T--CCCATGGA--AAA-CGA----------------TATA------AAATTTTGTAAA-------AT-TA-GT---TGTAAATGTTC----------CTGTAAACCCTTATTT-AC-CAC-AGAATTT-TCCTTT
gi|15 : TAAAGATATTGGATG---T--CC--------AAA--AAGTTTG----------TTACA------GAGCTTTGTAAA-------AAGTA-CA---TGTAAATGTTTTG--ATATTGCTAAAAA
gi|16 : TG----------TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCA--TGTTTTA--ATATTTGTAAAACCCTATATGT-AC-CAC-
gi|17 : aaaCTATGAAACCA-CTTTAA---T----TTTTGTATT----ATTCACAAAACTTTTC-TTGAAAA--TTCA-ATG
gi|18 : -TTCTATGAAACCA-TTTTT----T--A-TTTTGCATT----ATTTATAAATATTTAC-TTGAAAA--Ta
gi|2 : TAAGGACACGTGATATACC--CC--------AAAACAAATT-G----------TTATT------GAATGTTGTAGA-------AC-TA-TC---TATAAATGTTTCATTGTACTGTTAAAAGCTCATATCT-AT-CATTAAACTTT-TCCTAGGAAACCA-CTTTT----T--C-TTTTGCATT----CTTCACTAATCTTTATGTGGAAAA--ATCATACATAGAAACAATACCCAA-AA-ATATAAATTCT-TC---A---------------GAA-----------ATTGGCGCA--T----------GA-----AT-------------G------AT--TGA--CA---------TTGTTTAATCAAATAATAAAAAAc
gi|3 : tGAACATAGTATA---C------------AAA-CCAAGCTA----------T---A------AAGTTT----AA-------AA-CG-TTGAATGTAGGTTTCTTA------TGCT------CCATATTT-------------TT-TCTCATGATACCA-CATGCA---TCTA-TTTTGCATT----TTTCACAAATGTTAAT-TT-ACAA--TTCA-ATG---------TA------AA-ATTGAAATCTT-TCC--A---------------AAATGT-CGTTTTTATTTGTGCA--TTTCA-------------ATGA-----C----CG------ATCGTTA--T------TG--TTGTTTTATCAAATGATAGAAAAtaatacacgtaaacgaagtaaaatcttattccatttgatacgtctaaaatct
gi|4 : AGGACATGGAATA---C-----------------AAA------------------A------GAATGCTGCAAA-------------TT---TGTAAATGTTCTG--ATATTGCTTAAA-CCCATATCT-AAACAC-CAAATTT-CCTTGTGCAAT-G-CTTT----------TTTTTCA--------TCATAAATCTTTAC-TTGAAAA--TTTA-ATTTAAAAACGTTA-------------------T-TC---A---------------AA-------TTTTTATTGGTACA--GTTCA------TA-----TTTGATTAAC----TG------AT--TTG--CA-----TGGTTCTTTTTATCAAATGAAAGAAAAccccaccaaaacacggcacattttccacaatttgatgcgtccaaaaatcgtggatatcctttgatcttgatgaggcatgaa
gi|5 : TAAGGATATAGCACA---C--CC--------AAA-TAAATTTA----------TCACA------GAATTTTGTAAA-------AAGTA-TT---TGTAAATGTTTTA--ATGTTGCTAGAAACCCATATTT-AC-CAC-AGAATTT-TCTTCTGAAACCA-ATTCAA---T--G-TTTTGCTAT----ACTCACAAATCTTTGC-TTGAAAG--TTCA-ATGGAAAAACATTACCTAA-AA-ATTGAAATCCT-CC---A---------------AAAAAT-C-TTTTTATTGGTATATTTTTCA------TA-----ATGG-----C----TG------AT--TTA--CA-----TG--TTGTTTTATCAAGAAATAGGAAAtttcacctagatacagcaacttcctttgatgtgtccagaatcttgattatactataacct
gi|6 : TTAG---------TTATG------GAATTTTGTAAACTAAATTAA-TA-AT---TATAAGTGTTTTA--ATAATGCTGAAAATTCATATTT-AC-TTC-AAAATTTCCCCTATGATACCA-GTTT----------TTGGGGGATA---ATTTTCAAATCTTTAA-TCAAAAA--GTCA-TGGGAGAAACATGACCCAA-AC-AATAAAATCTT-TC--------------------AAGCT-T-CTTTTAACGCTGCA--TTTCACTGAACTA-----ATGA-----CTACTCGTAA---AT--TTA--CA---------ATGTTTGAAAAAATAATGGAAA
gi|7 : aaaagaatattcATA---CAACC--------AAG-CA--TTGA----------TTACATAAGAAGAATTT-GTAAA-------AC-TA----------AA------A--GTACTACTAACA-CCAATATTT-AC-CAC----------TCTAT---ATC--CTTCA----T----TTTTGCATT----CTTCACAAAT-TTGAC-TTGAATA--TCCA-ATGGTAAAACATTACCCAATAA-GATAAAATTCT-TC---A---------------AGACAG-C-TTTATTTTGATACA--GTTTATGTAT-TA-----AAGA-----T----CACAATACAT--GTA--CAT----TG--TTGTCTGAT
gi|8 : gttattcacatcTATTT-AT-CGT-ACTATTG-TCAT-TGAAAACATCTTTAA---T-----TTTGCGTT----ATTCACAATTCTGTGC-TTTAAAAAGTTCA-ATGGAAAAAC-TT--CCTA-AA-TTTGGAACC-------------------------------C-TTTTCATTGGTGCA------A------TA--------------C----CG------AT--TTATTCAAATGCTG--TTGTTTGATCAAATAA---AAAA
gi|9 : AGGACATAGGACA---C--CTATTGTAAAAAA-AAAAGTTAATTGTAACGGTTATA------GAATATTGTAAA-------AC-AA-TT---------TGTTTTA--ATATTGCTAAAAATCCATTTTC-A--CAC-AACATAT-TTCTATGAAATCA-CCTT-----T--T-GTTTGCATT----ATTCACAAATATTTAC-TTGAAAA--TTCA-ATGGGAAAAC--TATCCAA-AA-ATTGGAATACT-TT---A---------------Agtcccaggtaaaatagcaaagtccttcttcaattgatgtgtccataatttaagttattctat
Alignments
lowQualScore : 55555555555555555555555555555555555555 1111111111 1111 222222222 4444444444444444444444444444 55555555555555555555555555555555555 222222222
lowQualScore : 44444444444444444444444444444444444444 999999 1 4444444444 666666 44 0 9 3 55 2222 3 3 77777 333333333 3 555 6666 3 3 0 44 3 44 8 2 0 3 3 0 2 3 0000000000000000000000000000 777 33333333333333333333333333333333333 55 55 888888888 0 1
lowQualScore : ...................................... ...... . .......... ...... .. . . . .. .... . . ..... ......... . ... .... . . . .. . .. . . . . . . . . ............................ ... ................................... .. .. ......... . .
lowQualScore : 11111111111111111111111111111111111111 666666 7 8888888888 111111 22 2 0 1 22 9999 1 1 77777 000000000 1 444 5555 5 1 2 22 1 22 3 1 4 1 1 3 3 3 8888888888888888888888888888 000 66666666666666666666666666666666666 00 55 999999999 1 7
consensus : TAAGGACATAGGATA---C--CC--------AAA-CAAATTTG----------TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
Reference ( family-1693 ) : TAAGGACATAGGATA---C--CC--------AAA-CAAATTTA----------TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
gi|1 : -CAAAT--G----------TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCAAATGTTTTA--ATATTTCGAAAACCTCATATGT-AC-CAC---AATTT-T--TATGAACCCA-C-----CTTAAATTTAC-T-TTT---GCATTTAATATTCACATATATTTAC-TTG--AA--T------------------CTCAA-AA-ATTGAAGTCTTGTC---GTTGGTGCATTCCTGTGGAAGT-C-TTTTTATTGCTGCA--TTTCATGTAT-TA-----ATGA-----C----CA------AT--TTA--CAG----TG--T
gi|10 : --------AAA-CAAATT-A----------TTACA------GAATTTTATTAA-------AT-AAATT---TGTAAATGTTTTG--ATACTTCTAAAA-CCCAT-----------------TT-TTCTA------CA-T-----CTTT-----AC-T-TTT---GCAC----GATAGACAAATCTTTAC-TTT-AAA--TTCA-ATGACAAAACGTTGCCCCA-AA-ACTGCAATCCC-TCT--A---------------AAACAT-C-GTTTTATAAATGCA--TTTCA------CGC----ATGG-----A----TG------GT--Taatagactattccacgtaaacacagaacatcctactttatttgatgtgtccaaaatcttgggtatccaatgactaagttttgaaaaacacgaa
gi|11 : AACATTACCCAA-AATAT--AAATTAT-TC---A---------------AAAACTTC-TCTTTGTTCGTGT--------------TA-----ATGG-----C----CA------AT--TTA--CAC----TG--TTGTTTGATTAATTAATAGAAAAaattcaaa
gi|12 : atgTTAA--ATATTGCTAAAAACACATATTTTAC-TAC-AAAATTT-TCCTGTGAAACCA-C-----CTTT-----AT-A-TTT---GCGT----TATTCACA------TAT-TTAACAA----CA-ACACAAAAAC-TCCTTCAA-AA-ACTtctccagtaatctcagtaaagttctacttcttttgatgagtccaaaatcttcggtattcgat
gi|13 : TCA-ATGGAAAAACATTACCCCA-AA-ACTGAAATCCT-ACAAAA---------------AAATGT-A-TTTTCAATGGTAGA--TTTCA------TATAGCGAAGG-----T----CA------AT--TTA--TAT----TA--CTGTTGGATCA
gi|14 : TAAAGACATAAGATA---T--CCCATGGA--AAA-CGA----------------TATA------AAATTTTGTAAA-------AT-TA-GT---TGTAAATGTTC----------CTGTAAACCCTTATTT-AC-CAC-AGAATTT-TCCT
gi|15 : TAAAGATATTGGATG---T--CC--------AAA--AAGTTTG----------TTACA------GAGCTTTGTAAA-------AAGTA-CA---TGTAAATGTTTTG--ATATTGCTAAAAAtt
gi|16 : TG----------TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCA--TGTTTTA--ATATTTGTAAAACCCTATATGT-AC-CAC-
gi|17 : aaaCTATGAAACCA-C-----TTTA-----AT-T-TTT---GTAT----TATTCACAAAACTTTTC-TTGAAAA--TTCA-ATG
gi|18 : -TTCTATGAAACCA-T-----TTTT-----TA-T-TTT---GCAT----TATTTATAAATATTTAC-TTGAAAA--Ta
gi|2 : TAAGGACACGTGATATACC--CC--------AAAACAAATT-G----------TTATT------GAATGTTGTAGA-------AC-TA-TC---TATAAATGTTTCATTGTACTGTTAAAAGCTCATATCT-AT-CATTAAACTTT-TCCTAGGAAACCA-C-----TTTT-----TC-T-TTT---GCAT----TCTTCACTAATCTTTATGTGGAAAA--ATCATACATAGAAACAATACCCAA-AA-ATATAAATTCT-TC---A---------------GAA-----------ATTGGCGCA--T----------GA-----AT-------------G------AT--TGA--CA---------TTGTTTAATCAAATAATAAAAAAc
gi|3 : tGAACATAGTATA---C------------AAA-CCAA---G----------CTATA------AAGTTT----AA-------AA-CG-TTGAATGTAGGTTTCTTA------TGCT------CCATATTT-------------TT-TCTCATGATACCA-CATGCATCTA--------T-TTT---GCAT----TTTTCACAAATGTTAAT-TT-ACAA--TTCA-ATG---------TA------AA-ATTGAAATCTT-TCC--A---------------AAATGT-CGTTTTTATTTGTGCA--TTTCA-------------ATGA-----C----CG------ATCGTTA--T------TG--TTGTTTTATCAAATGATAGAAAAtaatacacgtaaacgaagtaaaatcttattccatttgatacgtctaaaatct
gi|4 : AGGACATGGAATA---C-----------------AAA------------------A------GAATGCTGCAAA-------------TT---TGTAAATGTTCTG--ATATTGCTTAAA-CCCATATCT-AAACAC-CAAATTT-CCTTGTGCAAT-G-C-----TTT-------T-T-TTT----CAT--------CATAAATCTTTAC-TTGAAAA--TTTA-ATTTAAAAACGTTA-------------------T-TC---A---------------AA-------TTTTTATTGGTACA--GTTCA------TA-----TTTGATTAAC----TG------AT--TTG--CA-----TGGTTCTTTTTATCAAATGAAAGAAAAccccaccaaaacacggcacattttccacaatttgatgcgtccaaaaatcgtggatatcctttgatcttgatgaggcatgaa
gi|5 : TAAGGATATAGCACA---C--CC--------AAA-TAAATTTA----------TCACA------GAATTTTGTAAA-------AAGTA-TT---TGTAAATGTTTTA--ATGTTGCTAGAAACCCATATTT-AC-CAC-AGAATTT-TCTTCTGAAACCA-A-----TTCA-----ATGT-TTT---GCTA----TACTCACAAATCTTTGC-TTGAAAG--TTCA-ATGGAAAAACATTACCTAA-AA-ATTGAAATCCT-CC---A---------------AAAAAT-C-TTTTTATTGGTATATTTTTCA------TA-----ATGG-----C----TG------AT--TTA--CA-----TG--TTGTTTTATCAAGAAATAGGAAAtttcacctagatacagcaacttcctttgatgtgtccagaatcttgattatactataacct
gi|6 : TTAG---------TTATG------GAATTTTGTAAACTAAATTAA-TA-AT---TATAAGTGTTTTA--ATAATGCTGAAAATTCATATTT-AC-TTC-AAAATTTCCCCTATGATACC-----------A-----GT-T-TTTGGGGGAT----AATTTTCAAATCTTTAA-TCAAAAA--GTCA-TGGGAGAAACATGACCCAA-AC-AATAAAATCTT-TC--------------------AAGCT-T-CTTTTAACGCTGCA--TTTCACTGAACTA-----ATGA-----CTACTCGTAA---AT--TTA--CA---------ATGTTTGAAAAAATAATGGAAA
gi|7 : aaaagaatattcATA---CAACC--------AAG-CA--TTGA----------TTACATAAGAAGAATTT-GTAAA-------AC-TA----------AA------A--GTACTACTAACA-CCAATATTT-AC-CAC----------TCTAT---ATC--C-----TTCA------T-T-TTT---GCAT----TCTTCACAAAT-TTGAC-TTGAATA--TCCA-ATGGTAAAACATTACCCAATAA-GATAAAATTCT-TC---A---------------AGACAG-C-TTTATTTTGATACA--GTTTATGTAT-TA-----AAGA-----T----CACAATACAT--GTA--CAT----TG--TTGTCTGAT
gi|8 : gttattcacatcTATTT-AT-CGT-ACTATTG-TCAT-TGAAAACATC-----TTTA-----AT-T-TT----GCGT----TATTCACAATTCTGTGC-TTTAAAAAGTTCA-ATGGAAAAAC-TT--CCTA-AA-TTTGGAACC-------------------------------C-TTTTCATTGGTGCA------A------TA--------------C----CG------AT--TTATTCAAATGCTG--TTGTTTGATCAAATAA---AAAA
gi|9 : AGGACATAGGACA---C--CTATTGTAAAAAA-AAAAGTTAATTGTAACGGTTATA------GAATATTGTAAA-------AC-AA-TT---------TGTTTTA--ATATTGCTAAAAATCCATTTTC-A--CAC-AACATAT-TTCTATGAAATCA-C-----CTT-------T-TGTTT---GCAT----TATTCACAAATATTTAC-TTGAAAA--TTCA-ATGGGAAAAC--TATCCAA-AA-ATTGGAATACT-TT---A---------------Agtcccaggtaaaatagcaaagtccttcttcaattgatgtgtccataatttaagttattctat
Alignments
lowQualScore : 55555555555555555555555555555555555555555 1111111111 1111 222222222 4444444444444444444444444444 55555555555555555555555555555555555 222222222
lowQualScore : 00000000000000000000000000000000000000000 1 4444444444 666666 44 0 9 3 33 2222 3 3 77777 333333333 3 555 6666 3 3 0 44 3 44 8 2 0 3 3 0 2 3 0000000000000000000000000000 777 33333333333333333333333333333333333 55 55 888888888 0 1
lowQualScore : ......................................... . .......... ...... .. . . . .. .... . . ..... ......... . ... .... . . . .. . .. . . . . . . . . ............................ ... ................................... .. .. ......... . .
lowQualScore : 22222222222222222222222222222222222222222 7 8888888888 111111 22 2 0 1 22 9999 1 1 77777 000000000 1 444 5555 5 1 2 22 1 22 3 1 4 1 1 3 3 3 8888888888888888888888888888 000 66666666666666666666666666666666666 00 55 999999999 1 7
consensus : TAAGGACATAGGATA---CCC------A--------AA-CAAATT-----------GTTATAGAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
Reference ( family-1693 ) : TAAGGACATAGGATA---CCC------A--------AA-CAAATTT----------GTTATAGAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
gi|1 : -CAAAT------------GTTATAGA-TTTTGTAAA-------AT-TA-TT---TGCAAATGTTTTA--ATATTTCGAAAACCTCATATGT-AC-CAC---AATTT-T--TATGAACCCA-C-----CTTAAATTTAC-T-TTT---GCATTTAATATTCACATATATTTAC-TTG--AA--T------------------CTCAA-AA-ATTGAAGTCTTGTC---GTTGGTGCATTCCTGTGGAAGT-C-TTTTTATTGCTGCA--TTTCATGTAT-TA-----ATGA-----C----CA------AT--TTA--CAG----TG--T
gi|10 : ------A--------AA-CAAATT-----------ATTACAGAATTTTATTAA-------AT-AAATT---TGTAAATGTTTTG--ATACTTCTAAAA-CCCAT-----------------TT-TTCTA------CA-T-----CTTT-----AC-T-TTT---GCAC----GATAGACAAATCTTTAC-TTT-AAA--TTCA-ATGACAAAACGTTGCCCCA-AA-ACTGCAATCCC-TCT--A---------------AAACAT-C-GTTTTATAAATGCA--TTTCA------CGC----ATGG-----A----TG------GT--Taatagactattccacgtaaacacagaacatcctactttatttgatgtgtccaaaatcttgggtatccaatgactaagttttgaaaaacacgaa
gi|11 : AACATTACCCAA-AATAT--AAATTAT-TC---A---------------AAAACTTC-TCTTTGTTCGTGT--------------TA-----ATGG-----C----CA------AT--TTA--CAC----TG--TTGTTTGATTAATTAATAGAAAAaattcaaa
gi|12 : atgTTAA--ATATTGCTAAAAACACATATTTTAC-TAC-AAAATTT-TCCTGTGAAACCA-C-----CTTT-----AT-A-TTT---GCGT----TATTCACA------TAT-TTAACAA----CA-ACACAAAAAC-TCCTTCAA-AA-ACTtctccagtaatctcagtaaagttctacttcttttgatgagtccaaaatcttcggtattcgat
gi|13 : TCA-ATGGAAAAACATTACCCCA-AA-ACTGAAATCCT-ACAAAA---------------AAATGT-A-TTTTCAATGGTAGA--TTTCA------TATAGCGAAGG-----T----CA------AT--TTA--TAT----TA--CTGTTGGATCA
gi|14 : TAAAGACATAAGATA---TCCCATGGAA--------AA-CGA----------------TATAAAATTTTGTAAA-------AT-TA-GT---TGTAAATGTTC----------CTGTAAACCCTTATTT-AC-CAC-AGAATTT-TCCT
gi|15 : TAAAGATATTGGATG---TCC------A--------AA--AAGTTT----------GTTACAGAGCTTTGTAAA-------AAGTA-CA---TGTAAATGTTTTG--ATATTGCTAAAAAtt
gi|16 : T----------GTTATAGA-TTTTGTAAA-------AT-TA-TT---TGCA--TGTTTTA--ATATTTGTAAAACCCTATATGT-AC-CAC-
gi|17 : aaaCTATGAAACCA-C-----TTTA-----AT-T-TTT---GTAT----TATTCACAAAACTTTTC-TTGAAAA--TTCA-ATG
gi|18 : -TTCTATGAAACCA-T-----TTTT-----TA-T-TTT---GCAT----TATTTATAAATATTTAC-TTGAAAA--Ta
gi|2 : TAAGGACACGTGATATACCCC------A--------AAACAAATT-----------GTTATTGAATGTTGTAGA-------AC-TA-TC---TATAAATGTTTCATTGTACTGTTAAAAGCTCATATCT-AT-CATTAAACTTT-TCCTAGGAAACCA-C-----TTTT-----TC-T-TTT---GCAT----TCTTCACTAATCTTTATGTGGAAAA--ATCATACATAGAAACAATACCCAA-AA-ATATAAATTCT-TC---A---------------GAA-----------ATTGGCGCA--T----------GA-----AT-------------G------AT--TGA--CA---------TTGTTTAATCAAATAATAAAAAAc
gi|3 : tGAACATAGTATA---C--------A--------AA-CCAA-------------GCTATAAAGTTT----AA-------AA-CG-TTGAATGTAGGTTTCTTA------TGCT------CCATATTT-------------TT-TCTCATGATACCA-CATGCATCTA--------T-TTT---GCAT----TTTTCACAAATGTTAAT-TT-ACAA--TTCA-ATG---------TA------AA-ATTGAAATCTT-TCC--A---------------AAATGT-CGTTTTTATTTGTGCA--TTTCA-------------ATGA-----C----CG------ATCGTTA--T------TG--TTGTTTTATCAAATGATAGAAAAtaatacacgtaaacgaagtaaaatcttattccatttgatacgtctaaaatct
gi|4 : AGGACATGGAATA---C---------------------AAA------------------AGAATGCTGCAAA-------------TT---TGTAAATGTTCTG--ATATTGCTTAAA-CCCATATCT-AAACAC-CAAATTT-CCTTGTGCAAT-G-C-----TTT-------T-T-TTT----CAT--------CATAAATCTTTAC-TTGAAAA--TTTA-ATTTAAAAACGTTA-------------------T-TC---A---------------AA-------TTTTTATTGGTACA--GTTCA------TA-----TTTGATTAAC----TG------AT--TTG--CA-----TGGTTCTTTTTATCAAATGAAAGAAAAccccaccaaaacacggcacattttccacaatttgatgcgtccaaaaatcgtggatatcctttgatcttgatgaggcatgaa
gi|5 : TAAGGATATAGCACA---CCC------A--------AA-TAAATTT----------ATCACAGAATTTTGTAAA-------AAGTA-TT---TGTAAATGTTTTA--ATGTTGCTAGAAACCCATATTT-AC-CAC-AGAATTT-TCTTCTGAAACCA-A-----TTCA-----ATGT-TTT---GCTA----TACTCACAAATCTTTGC-TTGAAAG--TTCA-ATGGAAAAACATTACCTAA-AA-ATTGAAATCCT-CC---A---------------AAAAAT-C-TTTTTATTGGTATATTTTTCA------TA-----ATGG-----C----TG------AT--TTA--CA-----TG--TTGTTTTATCAAGAAATAGGAAAtttcacctagatacagcaacttcctttgatgtgtccagaatcttgattatactataacct
gi|6 : TTA----------GTTATGGAATTTTGTAAACTAAATTAA-TA-AT---TATAAGTGTTTTA--ATAATGCTGAAAATTCATATTT-AC-TTC-AAAATTTCCCCTATGATACC-----------A-----GT-T-TTTGGGGGAT----AATTTTCAAATCTTTAA-TCAAAAA--GTCA-TGGGAGAAACATGACCCAA-AC-AATAAAATCTT-TC--------------------AAGCT-T-CTTTTAACGCTGCA--TTTCACTGAACTA-----ATGA-----CTACTCGTAA---AT--TTA--CA---------ATGTTTGAAAAAATAATGGAAA
gi|7 : aaaagaatattcAGAATTT-GTAAA-------AC-TA----------AA------A--GTACTACTAACA-CCAATATTT-AC-CAC----------TCTAT---ATC--C-----TTCA------T-T-TTT---GCAT----TCTTCACAAAT-TTGAC-TTGAATA--TCCA-ATGGTAAAACATTACCCAATAA-GATAAAATTCT-TC---A---------------AGACAG-C-TTTATTTTGATACA--GTTTATGTAT-TA-----AAGA-----T----CACAATACAT--GTA--CAT----TG--TTGTCTGAT
gi|8 : gttattcacatcatacaaccaagcattgattacataagaTATTT-AT-CGT-ACTATTG-TCAT-TGAAAACATC-----TTTA-----AT-T-TT----GCGT----TATTCACAATTCTGTGC-TTTAAAAAGTTCA-ATGGAAAAAC-TT--CCTA-AA-TTTGGAACC-------------------------------C-TTTTCATTGGTGCA------A------TA--------------C----CG------AT--TTATTCAAATGCTG--TTGTTTGATCAAATAA---AAAA
gi|9 : AGGACATAGGACA---CCT------ATTGTAAAAAA-AAAAGTTAATTGTAACGGTTATAGAATATTGTAAA-------AC-AA-TT---TGT------TTTA--ATATTGCTAAAAATCCATTTTC-AC--AC-AACATAT-TTCTATGAAATCA-C-----CTT-------T-TGTTT---GCAT----TATTCACAAATATTTAC-TTGAAAA--TTCA-ATGGGAAAAC--TATCCAA-AA-ATTGGAATACT-TT---A---------------Agtcccaggtaaaatagcaaagtccttcttcaattgatgtgtccataatttaagttattctat
Alignments
lowQualScore : 3333333333333333333333333333333333333 1111111111 1111 222222222 4444444444444444444444444444 55555555555555555555555555555555555 222222222
lowQualScore : 6666666666666666666666666666666666666 3 999999 1 4444444444 666666 44 0 9 3 33 2222 3 3 77777 333333333 3 555 6666 3 3 0 44 3 44 8 2 0 3 3 0 2 3 0000000000000000000000000000 777 33333333333333333333333333333333333 55 55 888888888 0 1
lowQualScore : ..................................... . ...... . .......... ...... .. . . . .. .... . . ..... ......... . ... .... . . . .. . .. . . . . . . . . ............................ ... ................................... .. .. ......... . .
lowQualScore : 7777777777777777777777777777777777777 3 666666 7 8888888888 111111 22 2 0 1 22 9999 1 1 77777 000000000 1 444 5555 5 1 2 22 1 22 3 1 4 1 1 3 3 3 8888888888888888888888888888 000 66666666666666666666666666666666666 00 55 999999999 1 7
consensus : TAAGGACATAGGATA---C--CCA---------AA-CAAATT----------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
Reference ( family-1693 ) : TAAGGACATAGGATA---C--CCA---------AA-CAAATT----------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
gi|1 : -CAAAT-----------G-TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCAAATGTTTTA--ATATTTCGAAAACCTCATATGT-AC-CAC---AATTT-T--TATGAACCCA-C-----CTTAAATTTAC-T-TTT---GCATTTAATATTCACATATATTTAC-TTG--AA--T------------------CTCAA-AA-ATTGAAGTCTTGTC---GTTGGTGCATTCCTGTGGAAGT-C-TTTTTATTGCTGCA--TTTCATGTAT-TA-----ATGA-----C----CA------AT--TTA--CAG----TG--T
gi|10 : A---------AA-CAAATT----------A-TTACA------GAATTTTATTAA-------AT-AAATT---TGTAAATGTTTTG--ATACTTCTAAAA-CCCAT-----------------TT-TTCTA------CA-T-----CTTT-----AC-T-TTT---GCAC----GATAGACAAATCTTTAC-TTT-AAA--TTCA-ATGACAAAACGTTGCCCCA-AA-ACTGCAATCCC-TCT--A---------------AAACAT-C-GTTTTATAAATGCA--TTTCA------CGC----ATGG-----A----TG------GT--Taatagactattccacgtaaacacagaacatcctactttatttgatgtgtccaaaatcttgggtatccaatgactaagttttgaaaaacacgaa
gi|11 : AACATTACCCAA-AATAT--AAATTAT-TC---A---------------AAAACTTC-TCTTTGTTCGTGT--------------TA-----ATGG-----C----CA------AT--TTA--CAC----TG--TTGTTTGATTAATTAATAGAAAAaattcaaa
gi|12 : atgTTAA--ATATTGCTAAAAACACATATTTTAC-TAC-AAAATTT-TCCTGTGAAACCA-C-----CTTT-----AT-A-TTT---GCGT----TATTCACA------TAT-TTAACAA----CA-ACACAAAAAC-TCCTTCAA-AA-ACTtctccagtaatctcagtaaagttctacttcttttgatgagtccaaaatcttcggtattcgat
gi|13 : TCA-ATGGAAAAACATTACCCCA-AA-ACTGAAATCCT-ACAAAA---------------AAATGT-A-TTTTCAATGGTAGA--TTTCA------TATAGCGAAGG-----T----CA------AT--TTA--TAT----TA--CTGTTGGATCA
gi|14 : TAAAGACATAAGATAT--C--CCA---------TG-GAAAAC----------G-ATATA------AAATTTTGTAAA-------AT-TA-GT---TGTAAATGTTC----------CTGTAAACCCTTATTT-AC-CAC-AGAATTT-TCCT
gi|15 : TAAAGATATTGGATG---T--CCA---------AA-AAGTTT----------G-TTACA------GAGCTTTGTAAA-------AAGTA-CA---TGTAAATGTTTTG--ATATTGCTAAAAAtt
gi|16 : AAAT-----------G-TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCA--TGTTTTA--ATATTTGTAAAACCCTATATGT-AC-CAC-
gi|17 : CTATGAAACCA-C-----TTTA-----AT-T-TTT---GTAT----TATTCACAAAACTTTTC-TTGAAAA--TTCA-ATG
gi|18 : -TTCTATGAAACCA-T-----TTTT-----TA-T-TTT---GCAT----TATTTATAAATATTTAC-TTGAAAA--Ta
gi|2 : TAAGGACACGTGATATACC--CCA---------AAACAAATT----------G-TTATT------GAATGTTGTAGA-------AC-TA-TC---TATAAATGTTTCATTGTACTGTTAAAAGCTCATATCT-AT-CATTAAACTTT-TCCTAGGAAACCA-C-----TTTT-----TC-T-TTT---GCAT----TCTTCACTAATCTTTATGTGGAAAA--ATCATACATAGAAACAATACCCAA-AA-ATATAAATTCT-TC---A---------------GAA-----------ATTGGCGCA--T----------GA-----AT-------------G------AT--TGA--CA---------TTGTTTAATCAAATAATAAAAAAc
gi|3 : tGAACATAGTATA---C----A---------AA-CCAA------------G-CTATA------AAGTTT----AA-------AA-CG-TTGAATGTAGGTTTCTTA------TGCT------CCATATTT-------------TT-TCTCATGATACCA-CATGCATCTA--------T-TTT---GCAT----TTTTCACAAATGTTAAT-TT-ACAA--TTCA-ATG---------TA------AA-ATTGAAATCTT-TCC--A---------------AAATGT-CGTTTTTATTTGTGCA--TTTCA-------------ATGA-----C----CG------ATCGTTA--T------TG--TTGTTTTATCAAATGATAGAAAAtaatacacgtaaacgaagtaaaatcttattccatttgatacgtctaaaatct
gi|4 : AGGACATGGAATA---C------------------AAA------------------A------GAATGCTGCAAA-------------TT---TGTAAATGTTCTG--ATATTGCTTAAA-CCCATATCT-AAACAC-CAAATTT-CCTTGTGCAAT-G-C-----TTT-------T-T-TTT----CAT--------CATAAATCTTTAC-TTGAAAA--TTTA-ATTTAAAAACGTTA-------------------T-TC---A---------------AA-------TTTTTATTGGTACA--GTTCA------TA-----TTTGATTAAC----TG------AT--TTG--CA-----TGGTTCTTTTTATCAAATGAAAGAAAAccccaccaaaacacggcacattttccacaatttgatgcgtccaaaaatcgtggatatcctttgatcttgatgaggcatgaa
gi|5 : TAAGGATATAGCACA---C--CCA---------AA-TAAATTT---------A-TCACA------GAATTTTGTAAA-------AAGTA-TT---TGTAAATGTTTTA--ATGTTGCTAGAAACCCATATTT-AC-CAC-AGAATTT-TCTTCTGAAACCA-A-----TTCA-----ATGT-TTT---GCTA----TACTCACAAATCTTTGC-TTGAAAG--TTCA-ATGGAAAAACATTACCTAA-AA-ATTGAAATCCT-CC---A---------------AAAAAT-C-TTTTTATTGGTATATTTTTCA------TA-----ATGG-----C----TG------AT--TTA--CA-----TG--TTGTTTTATCAAGAAATAGGAAAtttcacctagatacagcaacttcctttgatgtgtccagaatcttgattatactataacct
gi|6 : ----------G-TTATG------GAATTTTGTAAACTAAATTAA-TA-AT---TATAAGTGTTTTA--ATAATGCTGAAAATTCATATTT-AC-TTC-AAAATTTCCCCTATGATACC-----------A-----GT-T-TTTGGGGGAT----AATTTTCAAATCTTTAA-TCAAAAA--GTCA-TGGGAGAAACATGACCCAA-AC-AATAAAATCTT-TC--------------------AAGCT-T-CTTTTAACGCTGCA--TTTCACTGAACTA-----ATGA-----CTACTCGTAA---AT--TTA--CA---------ATGTTTGAAAAAATAATGGAAA
gi|7 : aaaagaatattcttaATA---CAACCA---------AG-CA--TT----------GATTACATAAGAAGAATTT-GTAAA-------AC-TA----------AA------A--GTACTACTAACA-CCAATATTT-AC-CAC----------TCTAT---ATC--C-----TTCA------T-T-TTT---GCAT----TCTTCACAAAT-TTGAC-TTGAATA--TCCA-ATGGTAAAACATTACCCAATAA-GATAAAATTCT-TC---A---------------AGACAG-C-TTTATTTTGATACA--GTTTATGTAT-TA-----AAGA-----T----CACAATACAT--GTA--CAT----TG--TTGTCTGAT
gi|8 : gttattcacatcTATTT-AT-CGT-ACTATTG-TCAT-TGAAAACATC-----TTTA-----AT-T-TT----GCGT----TATTCACAATTCTGTGC-TTTAAAAAGTTCA-ATGGAAAAAC-TT--CCTA-AA-TTTGGAACC-------------------------------C-TTTTCATTGGTGCA------A------TA--------------C----CG------AT--TTATTCAAATGCTG--TTGTTTGATCAAATAA---AAAA
gi|9 : AGGACATAGGACA---C--CTATTGTAAAAAAA-AAAGTTAATTGTAACGG-TTATA------GAATATTGTAAA-------AC-AA-TT---TGT------TTTA--ATATTGCTAAAAATCCATTTTC-AC--AC-AACATAT-TTCTATGAAATCA-C-----CTT-------T-TGTTT---GCAT----TATTCACAAATATTTAC-TTGAAAA--TTCA-ATGGGAAAAC--TATCCAA-AA-ATTGGAATACT-TT---A---------------Agtcccaggtaaaatagcaaagtccttcttcaattgatgtgtccataatttaagttattctat
Alignments
lowQualScore : 3333333333333333333333333333333333333 1111111111 1111 222222222 4444444444444444444444444444 55555555555555555555555555555555555 222222222
lowQualScore : 6666666666666666666666666666666666666 3 999999 1 4444444444 666666 44 0 9 3 33 2222 3 3 77777 333333333 3 555 6666 3 3 0 44 3 44 8 2 0 3 3 0 2 3 0000000000000000000000000000 777 33333333333333333333333333333333333 55 55 888888888 0 1
lowQualScore : ..................................... . ...... . .......... ...... .. . . . .. .... . . ..... ......... . ... .... . . . .. . .. . . . . . . . . ............................ ... ................................... .. .. ......... . .
lowQualScore : 7777777777777777777777777777777777777 3 666666 7 8888888888 111111 22 2 0 1 22 9999 1 1 77777 000000000 1 444 5555 5 1 2 22 1 22 3 1 4 1 1 3 3 3 8888888888888888888888888888 000 66666666666666666666666666666666666 00 55 999999999 1 7
consensus : TAAGGACATAGGATA---C--CCA---------AA-CAAATT----------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
Reference ( family-1693 ) : TAAGGACATAGGATA---C--CCA---------AA-CAAATT----------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
gi|1 : -CAAAT-----------G-TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCAAATGTTTTA--ATATTTCGAAAACCTCATATGT-AC-CAC---AATTT-T--TATGAACCCA-C-----CTTAAATTTAC-T-TTT---GCATTTAATATTCACATATATTTAC-TTG--AA--T------------------CTCAA-AA-ATTGAAGTCTTGTC---GTTGGTGCATTCCTGTGGAAGT-C-TTTTTATTGCTGCA--TTTCATGTAT-TA-----ATGA-----C----CA------AT--TTA--CAG----TG--T
gi|10 : A---------AA-CAAATT----------A-TTACA------GAATTTTATTAA-------AT-AAATT---TGTAAATGTTTTG--ATACTTCTAAAA-CCCAT-----------------TT-TTCTA------CA-T-----CTTT-----AC-T-TTT---GCAC----GATAGACAAATCTTTAC-TTT-AAA--TTCA-ATGACAAAACGTTGCCCCA-AA-ACTGCAATCCC-TCT--A---------------AAACAT-C-GTTTTATAAATGCA--TTTCA------CGC----ATGG-----A----TG------GT--Taatagactattccacgtaaacacagaacatcctactttatttgatgtgtccaaaatcttgggtatccaatgactaagttttgaaaaacacgaa
gi|11 : AACATTACCCAA-AATAT--AAATTAT-TC---A---------------AAAACTTC-TCTTTGTTCGTGT--------------TA-----ATGG-----C----CA------AT--TTA--CAC----TG--TTGTTTGATTAATTAATAGAAAAaattcaaa
gi|12 : atgTTAA--ATATTGCTAAAAACACATATTTTAC-TAC-AAAATTT-TCCTGTGAAACCA-C-----CTTT-----AT-A-TTT---GCGT----TATTCACA------TAT-TTAACAA----CA-ACACAAAAAC-TCCTTCAA-AA-ACTtctccagtaatctcagtaaagttctacttcttttgatgagtccaaaatcttcggtattcgat
gi|13 : TCA-ATGGAAAAACATTACCCCA-AA-ACTGAAATCCT-ACAAAA---------------AAATGT-A-TTTTCAATGGTAGA--TTTCA------TATAGCGAAGG-----T----CA------AT--TTA--TAT----TA--CTGTTGGATCA
gi|14 : TAAAGACATAAGATAT--C--CCA---------TG-GAAAAC----------G-ATATA------AAATTTTGTAAA-------AT-TA-GT---TGTAAATGTTC----------CTGTAAACCCTTATTT-AC-CAC-AGAATTT-TCCT
gi|15 : TAAAGATATTGGATG---T--CCA---------AA-AAGTTT----------G-TTACA------GAGCTTTGTAAA-------AAGTA-CA---TGTAAATGTTTTG--ATATTGCTAAAAAtt
gi|16 : AAAT-----------G-TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCA--TGTTTTA--ATATTTGTAAAACCCTATATGT-AC-CAC-
gi|17 : CTATGAAACCA-C-----TTTA-----AT-T-TTT---GTAT----TATTCACAAAACTTTTC-TTGAAAA--TTCA-ATG
gi|18 : -TTCTATGAAACCA-T-----TTTT-----TA-T-TTT---GCAT----TATTTATAAATATTTAC-TTGAAAA--Ta
gi|2 : TAAGGACACGTGATATACC--CCA---------AAACAAATT----------G-TTATT------GAATGTTGTAGA-------AC-TA-TC---TATAAATGTTTCATTGTACTGTTAAAAGCTCATATCT-AT-CATTAAACTTT-TCCTAGGAAACCA-C-----TTTT-----TC-T-TTT---GCAT----TCTTCACTAATCTTTATGTGGAAAA--ATCATACATAGAAACAATACCCAA-AA-ATATAAATTCT-TC---A---------------GAA-----------ATTGGCGCA--T----------GA-----AT-------------G------AT--TGA--CA---------TTGTTTAATCAAATAATAAAAAAc
gi|3 : tGAACATAGTATA---C----A---------AA-CCAA------------G-CTATA------AAGTTT----AA-------AA-CG-TTGAATGTAGGTTTCTTA------TGCT------CCATATTT-------------TT-TCTCATGATACCA-CATGCATCTA--------T-TTT---GCAT----TTTTCACAAATGTTAAT-TT-ACAA--TTCA-ATG---------TA------AA-ATTGAAATCTT-TCC--A---------------AAATGT-CGTTTTTATTTGTGCA--TTTCA-------------ATGA-----C----CG------ATCGTTA--T------TG--TTGTTTTATCAAATGATAGAAAAtaatacacgtaaacgaagtaaaatcttattccatttgatacgtctaaaatct
gi|4 : AGGACATGGAATA---C------------------AAA------------------A------GAATGCTGCAAA-------------TT---TGTAAATGTTCTG--ATATTGCTTAAA-CCCATATCT-AAACAC-CAAATTT-CCTTGTGCAAT-G-C-----TTT-------T-T-TTT----CAT--------CATAAATCTTTAC-TTGAAAA--TTTA-ATTTAAAAACGTTA-------------------T-TC---A---------------AA-------TTTTTATTGGTACA--GTTCA------TA-----TTTGATTAAC----TG------AT--TTG--CA-----TGGTTCTTTTTATCAAATGAAAGAAAAccccaccaaaacacggcacattttccacaatttgatgcgtccaaaaatcgtggatatcctttgatcttgatgaggcatgaa
gi|5 : TAAGGATATAGCACA---C--CCA---------AA-TAAATTT---------A-TCACA------GAATTTTGTAAA-------AAGTA-TT---TGTAAATGTTTTA--ATGTTGCTAGAAACCCATATTT-AC-CAC-AGAATTT-TCTTCTGAAACCA-A-----TTCA-----ATGT-TTT---GCTA----TACTCACAAATCTTTGC-TTGAAAG--TTCA-ATGGAAAAACATTACCTAA-AA-ATTGAAATCCT-CC---A---------------AAAAAT-C-TTTTTATTGGTATATTTTTCA------TA-----ATGG-----C----TG------AT--TTA--CA-----TG--TTGTTTTATCAAGAAATAGGAAAtttcacctagatacagcaacttcctttgatgtgtccagaatcttgattatactataacct
gi|6 : ----------G-TTATG------GAATTTTGTAAACTAAATTAA-TA-AT---TATAAGTGTTTTA--ATAATGCTGAAAATTCATATTT-AC-TTC-AAAATTTCCCCTATGATACC-----------A-----GT-T-TTTGGGGGAT----AATTTTCAAATCTTTAA-TCAAAAA--GTCA-TGGGAGAAACATGACCCAA-AC-AATAAAATCTT-TC--------------------AAGCT-T-CTTTTAACGCTGCA--TTTCACTGAACTA-----ATGA-----CTACTCGTAA---AT--TTA--CA---------ATGTTTGAAAAAATAATGGAAA
gi|7 : aaaagaatattcttaATA---CAACCA---------AG-CA--TT----------GATTACATAAGAAGAATTT-GTAAA-------AC-TA----------AA------A--GTACTACTAACA-CCAATATTT-AC-CAC----------TCTAT---ATC--C-----TTCA------T-T-TTT---GCAT----TCTTCACAAAT-TTGAC-TTGAATA--TCCA-ATGGTAAAACATTACCCAATAA-GATAAAATTCT-TC---A---------------AGACAG-C-TTTATTTTGATACA--GTTTATGTAT-TA-----AAGA-----T----CACAATACAT--GTA--CAT----TG--TTGTCTGAT
gi|8 : gttattcacatcTATTT-AT-CGT-ACTATTG-TCAT-TGAAAACATC-----TTTA-----AT-T-TT----GCGT----TATTCACAATTCTGTGC-TTTAAAAAGTTCA-ATGGAAAAAC-TT--CCTA-AA-TTTGGAACC-------------------------------C-TTTTCATTGGTGCA------A------TA--------------C----CG------AT--TTATTCAAATGCTG--TTGTTTGATCAAATAA---AAAA
gi|9 : AGGACATAGGACA---C--CTATTGTAAAAAAA-AAAGTTAATTGTAACGG-TTATA------GAATATTGTAAA-------AC-AA-TT---TGT------TTTA--ATATTGCTAAAAATCCATTTTC-AC--AC-AACATAT-TTCTATGAAATCA-C-----CTT-------T-TGTTT---GCAT----TATTCACAAATATTTAC-TTGAAAA--TTCA-ATGGGAAAAC--TATCCAA-AA-ATTGGAATACT-TT---A---------------Agtcccaggtaaaatagcaaagtccttcttcaattgatgtgtccataatttaagttattctat
blockSeqs : CCTATTGTAAAAAAAAAAGTTAATTGTAACG A TAAGAA A CTAAATTAA TTGAA TT A T AC TAAA C T ATGCA AATG G GGG . C G AG T AC G C T T C . AAAAAAATGTA TTT CTGAACTAATGACTACTCGTAA CG TT AATGCTG T
blockSeqs : TACCCCAAAACAAATT . . A AAG ATT . A . T AAA . . . TAC . . . C . . . CA A C . . A . CAAAATGTCG T TGTATTAAAGATCACAATAC . . TGGT T
blockSeqs : CCCAAATAAATTT . . G AAG GT . A . C AGA . . . TAT . . . A . . . GA A T . . C . TAAAACATC T TATAGCGAAGGTCA . . CTG A
blockSeqs : TCCAAAAAGTTT . . A AT CA . C . C CAA . . . AAT . . . C . . . TA A C . . C . AAAAACTTC T TATTTGATTAACTG . . TTA T
blockSeqs : CAACCAAGCATT . . G AT TT . G . C AGA . . . TTA . . . G . . . TA G C . . T . AAAAAATC T CGCATGGATG . . TTG T
blockSeqs : CAAACCAA . . A AT TC . A . C AAA . . . TTC . . . C . . . GA A C . . C . AAGACAGC G TAATGGCCA . . TG .
blockSeqs : CAAA . . A AC TT . A . T ACT . . . AGT . . . C . . . GA A C . . T . AAGCTT T TAATGGCTG . . TG
blockSeqs : . . A AA TT . A . C AAC . . . AAT . . . C . . . GT A C . . C . AGAA G ATGACCG . . .
blockSeqs : . . A AC AT . . . C . . . . AT . . . C . . . GA . T . . C . AAA . GAATG . . .
blockSeqs : . . A AC TT . . . . . . . . A . . . A . . . GG . . . . . . C . TACCG .
blockSeqs : . . . . . . . . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . .
blockSeqCons : CCCAAACAAATT************************* AAA* NAT****** **** GA AAAATC**********************
originalCons : TAAGGACATAGGATA---C--CCA---------AA-CAAATT----------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTT-TCCTATGAAACCA-C-----TTTA-----AT-T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC---A---------------AAANGT-C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
finalCons : TAAGGACATAGGATACCCAAACAAATT-------------------------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CACAAA-ATTT-TCCTATGAAACCA-C-----TTTNAT------T-TTT---GCAT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TCAAAATC----------------------TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
Alignments
lowQualScore : 3333333333333333333333333333333333333 1111111111 1111 111111111111111 555555555555555555555555555555555 55555555555555555555555555555555555 222222222
lowQualScore : 6666666666666666666666666666666666666 3 999999 1 4444444444 666666 44 0 9 3 33 2222 2 444444444444444 555 6666 3 3 0 44 3 44 8 2 0 3 3 0 2 3 333333333333333333333333333333333 777 33333333333333333333333333333333333 55 55 888888888 0 1
lowQualScore : ..................................... . ...... . .......... ...... .. . . . .. .... . ............... ... .... . . . .. . .. . . . . . . . . ................................. ... ................................... .. .. ......... . .
lowQualScore : 7777777777777777777777777777777777777 3 666666 7 8888888888 111111 22 2 0 1 22 9999 9 000000000000000 444 5555 5 1 2 22 1 22 3 1 4 1 1 3 3 3 777777777777777777777777777777777 000 66666666666666666666666666666666666 00 55 999999999 1 7
consensus : TAAGGACATAGGATA---C--CCA---------AA-CAAATT----------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTTTCC-TATGAAACCACC-----TTTAT---TTTTGC---AT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC-----------------AAA--A-----T--C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
Reference ( family-1693 ) : TAAGGACATAGGATA---C--CCA---------AA-CAAATT----------G-TTATA------GAATTTTGTAAA-------AN-TA-TT---TGTAAATGTTTTA--ATATTGCTAAAAACCCATATTT-AC-CAC-AAAATTTTCC-TATGAAACCACT-----TTNAT---TTTTGC---AT----TATTCACAAATCTTTAC-TTGAAAA--TTCA-ATGGAAAAACATTACCCAA-AA-ATTGAAATCCT-TC-----------------AAA--A-----T--C-TTTTTATTGGTGCA--TTTCA------TA-----ATGG-----C----CG------AT--TTA--CA-----TG--TTGTTTGATCAAATAATAGAAAA
gi|1 : -CAAAT-----------G-TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCAAATGTTTTA--ATATTTCGAAAACCTCATATGT-AC-CAC---AATTTT---TATGAACCCACCTTAAATTTAC---TTTTGC---ATTTAATATTCACATATATTTAC-TTG--AA--T------------------CTCAA-AA-ATTGAAGTCTTGTCGTTGGTGCATTCCTGTGGAA--G-----T--C-TTTTTATTGCTGCA--TTTCATGTAT-TA-----ATGA-----C----CA------AT--TTA--CAG----TG--T
gi|10 : A---------AA-CAAATT----------A-TTACA------GAATTTTATTAA-------AT-AAATT---TGTAAATGTTTTG--ATACTTCTAAAA-CCCAT-----------------TTTTC-TA------CATC-----TTTAC---TTTTGC---AC----GATAGACAAATCTTTAC-TTTAAA---TTCA-ATGACAAAACGTTGCCCCA-AA-ACTGCAATCCC-TCT----------------AAAACA-----T--C-GTTTTATAAATGCA--TTTCA------CGC----ATGG-----A----TG------GT--Taatagactattccacgtaaacacagaacatcctactttatttgatgtgtccaaaatcttgggtatccaatgactaagttttgaaaaacacgaa
gi|11 : AACATTACCCAA-AATAT--AAATTAT-TC-----------------AAA--AACT--T--C-TCTTTGTTCGTGT--------------TA-----ATGG-----C----CA------AT--TTA--CAC----TG--TTGTTTGATTAATTAATAGAAAAaattcaaa
gi|12 : atgTTAA--ATATTGCTAAAAACACATATTTTAC-TAC-AAAATTTTCC-TGTGAAACCACC-----TTTAT---ATTTGC---GT----TATTCACA------TAT-TTAACAA----CA-ACACAAAAAC-TCCTTCAA-AA-ACTtctccagtaatctcagtaaagttctacttcttttgatgagtccaaaatcttcggtattcgat
gi|13 : TCA-ATGGAAAAACATTACCCCA-AA-ACTGAAATCCT-AC-----------------AAA--AAAATGT--A-TTTTCAATGGTAGA--TTTCA------TATAGCGAAGG-----T----CA------AT--TTA--TAT----TA--CTGTTGGATCA
gi|14 : TAAAGACATAAGATAT--C--CCA---------TG-GAAAAC----------G-ATATA------AAATTTTGTAAA-------AT-TA-GT---TGTAAATGTTC----------CTGTAAACCCTTATTT-AC-CAC-AGAATTTTCC-T
gi|15 : TAAAGATATTGGATG---T--CCA---------AA-AAGTTT----------G-TTACA------GAGCTTTGTAAA-------AAGTA-CA---TGTAAATGTTTTG--ATATTGCTAAAAAtt
gi|16 : AAAT-----------G-TTATA------GA-TTTTGTAAA-------AT-TA-TT---TGCA--TGTTTTA--ATATTTGTAAAACCCTATATGT-AC-CAC-
gi|17 : C-TATGAAACCACT-----TTAAT---TTTTGT---AT----TATTCACAAAACTTTTC-TTGAAAA--TTCA-ATG
gi|18 : TTC-TATGAAACCATT-----TTTTA---TTTTGC---AT----TATTTATAAATATTTAC-TTGAAAA--Ta
gi|2 : TAAGGACACGTGATATACC--CCA---------AAACAAATT----------G-TTATT------GAATGTTGTAGA-------AC-TA-TC---TATAAATGTTTCATTGTACTGTTAAAAGCTCATATCT-AT-CATTAAACTTTTCC-TAGGAAACCACT-----TTTTC---TTTTGC---AT----TCTTCACTAATCTTTATGTGGAAAA--ATCATACATAGAAACAATACCCAA-AA-ATATAAATTCT-TC-----------------AGA--A---------------ATTGGCGCA--T----------GA-----AT-------------G------AT--TGA--CA---------TTGTTTAATCAAATAATAAAAAAc
gi|3 : tGAACATAGTATA---C----A---------AA-CCAA------------G-CTATA------AAGTTT----AA-------AA-CG-TTGAATGTAGGTTTCTTA------TGCT------CCATATTT-------------TTTCT-CATGATACCACA-----TGCATCTATTTTGC---AT----TTTTCACAAATGTTAAT-TT-ACAA--TTCA-ATG---------TA------AA-ATTGAAATCTT-TCC----------------AAA--A-----TGTCGTTTTTATTTGTGCA--TTTCA-------------ATGA-----C----CG------ATCGTTA--T------TG--TTGTTTTATCAAATGATAGAAAAtaatacacgtaaacgaagtaaaatcttattccatttgatacgtctaaaatct
gi|4 : AGGACATGGAATA---C------------------AAA------------------A------GAATGCTGCAAA-------------TT---TGTAAATGTTCTG--ATATTGCTTAAA-CCCATATCT-AAACAC-CAAATTTCCT-TGTGCAAT-GCT-----TT--T---TTTT-C---AT--------CATAAATCTTTAC-TTGAAAA--TTTA-ATTTAAAAACGTTA-------------------T-TC-----------------AAA-------------TTTTTATTGGTACA--GTTCA------TA-----TTTGATTAAC----TG------AT--TTG--CA-----TGGTTCTTTTTATCAAATGAAAGAAAAccccaccaaaacacggcacattttccacaatttgatgcgtccaaaaatcgtggatatcctttgatcttgatgaggcatgaa
gi|5 : TAAGGATATAGCACA---C--CCA---------AA-TAAATTT---------A-TCACA------GAATTTTGTAAA-------AAGTA-TT---TGTAAATGTTTTA--ATGTTGCTAGAAACCCATATTT-AC-CAC-AGAATTTTCT-TCTGAAACCAAT-----TCAATG--TTTTGC---TA----TACTCACAAATCTTTGC-TTGAAAG--TTCA-ATGGAAAAACATTACCTAA-AA-ATTGAAATCCT-CCAA---------------AAA--A-----T--C-TTTTTATTGGTATATTTTTCA------TA-----ATGG-----C----TG------AT--TTA--CA-----TG--TTGTTTTATCAAGAAATAGGAAAtttcacctagatacagcaacttcctttgatgtgtccagaatcttgattatactataacct
gi|6 : ----------G-TTATG------GAATTTTGTAAACTAAATTAA-TA-AT---TATAAGTGTTTTA--ATAATGCTGAAAATTCATATTT-AC-TTC-AAAATTTCCCCTATGATACCA----------GT---TTTTGGGGGAT----AATTTTCAAATCTTTAA-TCAAAAA--GTCA-TGGGAGAAACATGACCCAA-AC-AATAAAATCTT-TC-----------------AAG--C-----T--T-CTTTTAACGCTGCA--TTTCACTGAACTA-----ATGA-----CTACTCGTAA---AT--TTA--CA---------ATGTTTGAAAAAATAATGGAAA
gi|7 : aaaagaatattcttaATA---CAACCA---------AG-CA--TT----------GATTACATAAGAAGAATTT-GTAAA-------AC-TA----------AA------A--GTACTACTAACA-CCAATATTT-AC-CAC---------TC-TAT--ATCC--------TTCAT---TTTTGC---AT----TCTTCACAAAT-TTGAC-TTGAATA--TCCA-ATGGTAAAACATTACCCAATAA-GATAAAATTCT-TC-----------------AAG--A-----CAGC-TTTATTTTGATACA--GTTTATGTAT-TA-----AAGA-----T----CACAATACAT--GTA--CAT----TG--TTGTCTGAT
gi|8 : gttattcacatcTATTT-AT-CGT-ACTATTGTCA-T-TGAAAACATC-----TTTAA---TTTTGC---GT----TATTCACAATTCTGTGC-TTTAAAAAGTTCA-ATGGAAAAAC-TT--CCTA-AA-TTTGGAACC------------------------------------C-TTTTCATTGGTGCA------A------TA--------------C----CG------AT--TTATTCAAATGCTG--TTGTTTGATCAAATAA---AAAA
gi|9 : AGGACATAGGACA---C--CTATTGTAAAAAAA-AAAGTTAATTGTAACGG-TTATA------GAATATTGTAAA-------AC-AA-TT---TGT------TTTA--ATATTGCTAAAAATCCATTTTC-AC--AC-AACATATTTC-TATGAAATCACC-----TTT-T---GTTTGC---AT----TATTCACAAATATTTAC-TTGAAAA--TTCA-ATGGGAAAAC--TATCCAA-AA-ATTGGAATACT-TT-----------------AAgtcccaggtaaaatagcaaagtccttcttcaattgatgtgtccataatttaagttattctat