lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 77777 11 222222222222 111 1111 1111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 55555555555555555555555555555555555555 33333333 222222222222 111 555555555555555555 11111 11111 22222 4444444444444444444444 111 1111 11 1 1 22 222 2 2222222222 1111 111 3333333333333333 1 11111111 333333 111 1 55
lowQualScore : 1 4 55 3 1 22222 44 5 555555555555 2 555 9 44 2 2222 4444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 4 2 888 5 5 11111111111111111111111111111111111111 0 8 88 66666666 2 1 666 777777777777 000 777777777777777777 44444 77 99999 6 77777 3 3333333333333333333333 1 444 5555 8 4444 3 3 88 3 3 7 3 1 22 7 222 0 4 4 5555555555 66 2222 5 000 22 0 4444444444444444 0 6 3 3 99999999 333333 2 000 888 2 4 6 55
lowQualScore : . . .. . . ..... .. . ............ . ... . .. . .... .... ..................................................................................................... . . . . ... . . ...................................... . . .. ........ . . ... ............ ... .................. ..... .. ..... . ..... . ...................... . ... .... . .... . . .. . . . . . .. . ... . . . .......... .. .... . ... .. . ................ . . . . ........ ...... . ... ... . . . ..
lowQualScore : 4 4 55 7 8 55555 22 6 666666666666 1 333 3 22 5 1111 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 8 0 888 0 0 44444444444444444444444444444444444444 3 7 77 99999999 7 3 333 444444444444 333 333333333333333333 33333 99 33333 7 44444 2 2222222222222222222222 0 000 2222 0 5555 2 7 33 3 3 3 2 2 00 3 000 0 4 4 7777777777 99 1111 7 888 88 8 8888888888888888 0 0 2 2 00000000 222222 5 888 333 0 0 0 00
consensus : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACA-----AACGTGCTTTTA------------ACGCAGGGTACAACCANTCCCTNCGGCAATTTACTATGGACAGTGNA----GATGTCNNCGAGGAGGGG--T--NA--G--A-----------A-----------T-----------T--TCTNTATACATNTAATT--CTNC-AAT--AAA---------AAAAATACATAGCCTATCAGGTGACGCAATAAA---TTCTGGTT-CGAATGATATA-----TAACATT---CGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-TAAAAAAT-TTCGTGTAA--------ATTGGTNTC-GG----C----------CGT-----T--TTCCTC--C--T-TTTTAT-GAAAANA-GA-----ACGAACNC-ACC--TAAAATCAAATTACG---TCAGT-GA-AAA-GACAATATCATCACAA--ATAT-ATAC-CATAATCGTCAGAAAGCAAACNTTTGCAATTGAGAGGATTGTTAAATGATAATTGAGATATGACGCTGGA-T-ACAACCATTCCCTGAAA-GTATAA--CGTAGGATACA----AC-CAT--TCTTAATACAA-----TGA-------CAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAGCTCCACTGTTNATCAC--GATA
Reference ( gi|1 ) : CACCGTAGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACATGTACAACGTGATTTGA------------ACGCAGGGTACAACCATTCCTTATTGCACTTTACTATGGGTAGTGCA----GATGTCATCAAGGAGGGG--T--TA--G--A-----------A-----------T-----------T--TCTATATACATATAATT--TTAT-AATTAAAA---------AAAAATACATAGCCTATCAGGTGGCGCAATAAA---TT-TGGTT-CGAATGATATA-----TACTATC---CGG-TAAGA--TC-C-C-TACT-ACTTGCTCAAACATCTC-AA-TACAGTTAGAAAAT-TTCGTAGAA--------ATTGTTATC-GG----C----------CGT-----T--TTCCTC--C--T-TTGTATCGAAAACA-AA-----ACGAATCC-ATC--TAAAATCAAATTACA---TCAGT-GA-AAA-GACAATATCATCACAA--ATAT-ATAC-CATAATTGTCAGAAAGCAAATTTTTGCAATTAAGAGGATTATTAAATGATAATTAA-ATATGACGCTGGA-T-ACAACCATTCCCTGAAA-GTATAA--CGTAGGATACA----AC-CAT--TTTTAATACAA-----TGA-------CAAA-TTACATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TATTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTTATTACAAGATA
gi|2 : CACCGTGGCCAAACGTAATTTCGAT-ACATCCATT--CCAACACAGGATACA------ACGTAGTTTGA------------ACACAGGGTACAACCATTCCTAACGGCACTTTACTATGGGCAGTGCA----AATGTCATCGAGGAGGGG--T--TA--GACA-----------A-----------T-----------G--CCT-----CATAT--TT--TTCTGAATGCAAATATTTCTTTAAAACTGCATAGCCTATCAGGTGACGCCATAAAAATTC-TGGTTGCGACTGATATA-----TAACATT---TGGTTCAGAATTC-C-CATACCAACTTGCTTAAACACCTCTAACTAC----AGAAAAT-CTCATCACATGTTCCATATTGTATTCTGA----C----------CGTGGTCGT--TTCCTT--CATT-TTTTAT-GAGAAAA-AAGTAATACGAACCC-G-CAATAAAATCAAATTACACTCCCACTCGA-AAA-AGCAACAACA
gi|6 : ttCGCCGTGGCCAGACGTCATTTGGAT-ACAAGCATT--CGTACGCAAGATACA-----AATGTGCTTTTA------------ACGCAGAGCACAACCAACCACTCTGGTAATTTACCATGGATAATGGA----G---------AGAAAGTGACC--CA--T--A-----------C-----------C-----------T--TTTTTATACAAATAATT--CT---------GA---------AGAAATATATAGCCT---------CTCAAT------TC-TGGTT-TGAATTATATA-----TAACATT---CGG-TCAGA--TCAC-C-TATC-GCTTGCTCAAAGATCT--------------AAA----TCGTGTAT--------ATTGGTTTT-GG----T----------AGT-----TTATTTTTA--C--TATTTTA--GAAAACA-GA-----AAAAA-AC-ACC--TAAAATTCAATTACG---TCAGT-GACAAACGACAattatgaacacacctgcacacaccacactagattaaccatacatcagcagctggaatacaacctttctctgaaatgtttaaataggatacaaccattccttacaaattcctaaagcattgcaaatttgcatcaatgcctgtttcgtgatgctatatatatagcgttt
gi|7 : CACCG--GCCAATCGTCATTTGGAT-GCAAGCAGT--CCTGCGCAGGATACA-----ATCATACTTTTA-------------------GTACACCCAACCACTACGGTAATTTACTATGGACAGTGGA----GATGTCCGGGAGGAGGGG--T--CA--G--A-----------AAA---------T-----------TG-TCCATCTATATCTA--T--GCGT-AATTA---------------------TA--CTATCAGGTGACGCAACCAA---TTCTTGTT-TGAATGATATAGTCTATAACATC---CGG-TCAGA--TTAC-C-AAAC-ACTTGCTCAAACACTTC-AA-TACAG-TAAACAACATCCGTGTTA--------ATTGGTTTC-GGATGTT----------CGT-----T--TTCTTt
gi|4 : CACCGTGGCCAAATGTCATTTGGAT-ACAACCATT--CCAATGCATG----ATGT--AACGTG-CTTGAACGCAGGGCCCGACGCAGGGTTCAACCATTCCCTGTGGCAATTTACTATGGGCAGTGCAAATCGATGTCATCGAGAAGGGG--T--TA--G--A-----------AAATTACTGAC-T-----------C--TCTGTATA-----AATTTCTTCC-AAT------------------GTACATAGCCTATCattt
gi|9 : aCACCGT-GTCAGACGTCATTTGGATTACAACCATTTTCCAACGCAGGATACA------ACGTGCTTTTA------------ACGCTGGGTACAACCATTCCTTATGGCATTTTGCTATGGACACTGCA----GATGTCCGTAAGGAGGGA--TAAAA--G--A-----------ATGCCTTGTATTT-----------T--TCTTTATCCATGTAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|14 : aCACCGTGGTCAAACGTCATTTTGGT-ACAACCATT--CCAACACAGGA------TACAACGTGCTTTGA------------ACGCAGGGTAaaattctggtttgaatgacaattaacattcggtcatattccccac
gi|15 : aCACCGTGGCCAAACGTCATTTGGTT-ACAACCATT--CCAACGCAGGATACA
gi|16 : CACCGTGGCCAACCGTCATTTGGGT-ACAACCATT--CCAACGCAGac
gi|3 : TGGAT-ACAACCATT--CT-------------TG---AAAGT-AT---A------------ACGTAGGATACAACCATTCTT
gi|5 : agatgtcatcaaggaggggttagaaaatgtctcctattcgtctctatacatttaattcttcaataatacatagcctatcacgtggcgcaataaattctggttcaaataatatataacatttggtaagattccctaccacttgctcaaacacctgaacacagtaaaaaaaatcgtggaaattagtatcggccgctcgttttcctcatttttatcaaaaaaacagacgatccaatctaaaatcaaattacatcagtgaaagacaatatcatcacaaatataatatacataattgtcagaaagcaaactttgcaattgaaaggattattaatgataattgaatatgacgc--CCTACGCAGGATACA-----ATTGTGCTTTTA------------ACGCAGACTACAACCAAGACTTTCGGCCATTTACTATGGACAGTGGA----AATGTCCGTGAGGAGGGA--C--AAAGG--A-----------G-----------TAACCCATATTTT--TCTTTATACGGGTAATT--CTG-------AAG---------AAAGATT--TCGCTTCTCAAGTGACGCAATATA---TC-C-----CG--TAGTACA-----T----TT-----G-TAAGT--TC-C-T-TACC-ACCTAATCAAACGCGTC-AA-TTCAGCTAAACAAT-TTTGTATAA--------ATTGTTCTC-------C----------AAC-----T--TTTTTT--T--T-TTG-A--GAAAATA-GA-----A-GAAAAA-AAG--TAAAATTTAATTACA---TCAGT-AA-AAA-GACA----C------A--ATAT-GTAC-CA-AAACATCAG-ATGTAAACATTTGCAA
gi|3 : A----GATGTCATCAAGGAGGGG--T--TA--G--AAAATGTCTCCTA-----------T-----------TCGTCTCTATACATTTAATT--CTTC-AAT-----------------AATACATAGCCTATCACGTGGCGCAATAAA---TTCTGGTT-CAAATAATATA-----TAACATT---TGG-TAAGAT-TC-C-C-TACC-ACTTGCTCAAACACCTG-AA-CACAG-TAAAAAAA-ATCGTGGAA--------ATTAGTATC-GG----CCGCT------CGT-----T--TTCCTC--A--T-TTTTATCAAAAAAACAG-----ACG-ATCCAATC--TAAAATCAAATTACA---TCAGT-G--AAA-GACAATATCATCACAA--ATATAATATACATAATTGTCAGAAAGCAAA-CTTTGCAATTGAAAGGATTATT-AATGATAATTGA-ATATGACGCTGGA-T-ACAACCATT-CTTGAAA-GTATAA--CGTAGGATACA----AC-CAT--TCTTaaaatagacaact
gi|4 : AAA---------GAGAATA---AGCCTATCGGGTGAAGCAACGAA---TTCTGGTT-CGAATGATATA-----T------------------------------------GTTCAAACA-CTT-GA--ACAGTAAGAAAAT-TTCGTGGAG--------ATTGGTACC-AG----CAGTAGCTGTTCGT-----T--TTCCTCTTC--T-TT
gi|9 : acaccgtggccaaatgtcatttggatacaaccattccaatgcatgatgtaacgtgcttgaacgcagggcccgacgcagggttcaaccattccctgtggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctatGTAATAAA---TTCTGGTT-TGAATGACAAT-----TAACATT---CGG-TCATAT-TC-C-C-CAC
gi|13 : acaccgtgtcagacgtcatttggattacaaccattttccaacgcaggatacaacgtgcttttaacgctgggtacaaccattccttatggcattttgctatggacactgcagatgtccgtaaggagggataaaagaatgccttgtatttttctttatccatAAA---TTCTGGTT-CGAATGATATA-----TA-TAACAGTCAG-TCAGA--TT-CAG-TACC-ACATGCTCAAACACCTC-AA-CGC----AAACAAT-TTCGTGTAA--------ATT
gi|11 : -----T--TTCTTC--A--T-TTTTATAGAAAACA-GA-----A-GAACTC-ACC--TAAACTCAAATTACG---TAAGT-GT-AAA-GACAATATAATCATAAATATAT-ATAC-CATAATTGTCAGAAGACA
gi|8 : TTGTCAGAAAGCAAACTTT-GCAATTAAGAGAATTGTTAA-TGATAATTAAGATATGATGCTGGA-T-ACAACCATTCTTTGAAA-GTATAGTTCCTAGGATACATTGAAC-CAT--TCCTAATACAG-----TGA-------CATA-TTGTATCGGTGCATATTTT--CTTGGTTT----GATCTGACTTTTGTGTTAGGATTTGA-AATCTGAATGTTGAACTCCACTGTTTATCAC--GATA
gi|9 : TAACGCTGGG-T-ACAACCATTCCTTa
gi|4 : acaccgtgtcagacgtcatttggattacaaccattttccaacgcaggatacaacgtgctttGACGCAGGG-T-TCAACCATTCCCTGatggcattttgctatggacactgcagatgtccgtaaggagggataaaagaatgccttgtatttttctttatccatgtaataaattctggtttgaatgacaattaacattcggtcatattccccac
gi|2 : acaccgtggccaaatgtcatttggatacaaccattccaatgcatgatgtaacgtgcttgaacgcagggcccGCTGGAAT-ACAACCTTTCTCTGAAATGTTTAA---ATAGGATACA----AC-CAT--TCCT--TACAAATTCCTAAAGCATTGCAAATTTGCATCAATGCCTG-TTT--CGTGATGCTATATATATAGCGTTT-tggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|7 : ttcaccgtggccaaacgtaatttcgatacatccattccaacacaggatacaacgtagtttgaacacagggtacaaccattcctaacggcactttactatgggcagtgcaaatgtcatcgaggaggggttagacaatgcctcatatttttctgaatgcaaatatttctttaaaactgcatagcctatcaggtgacgccataaaaattctggttgcgactgatatataacatttggttcagaattcccataccaacttgcttaaacacctctaactacagaaaatctcatcacatgttccatattgtattctgaccgtggtcgtttccttcattttttatgagaaaaaagtaatacgaacccgcaataaaatcaaattacactcccactcgaaaaagcaacaacaattatgaacacacctgcacacaccacactagattaaccatacatcagcaTGGA-T-GCAAGCAGTCC-TG------------CGCAGGATACA----AT-CATACTTTTAGTACA
gi|4 : caccggccaatcgtcattTGGA-T-ACAACCATTCC---AAT-GCATGA--TGTAcccaaccactacggtaatttactatggacagtggagatgtccgggaggaggggtcagaaaattgtccatctatatctatgcgtaattatactatcaggtgacgcaaccaattcttgtttgaatgatatagtctataacatccggtcagattaccaaacacttgctcaaacacttcaatacagtaaacaacatccgtgttaattggtttcggatgttcgttttcttattt
gi|9 : acaccgtggccaaatgtcattTGGA-TTACAACCATTTTCC---------AA--CGCAGGATACA----ACGTGC--TTTTAAacgtgcttgaacgcagggcccgacgcagggttcaaccattccctgtggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|15 : acaccgtgtcagacgtcattTGGT-T-ACAACCATTCC-----------AA--CGCAGGATACA----AC-cgctgggtacaaccattccttatggcattttgctatggacactgcagatgtccgtaaggagggataaaagaatgccttgtatttttctttatccatgtaataaattctggtttgaatgacaattaacattcggtcatattccccac
gi|10 : caccgtggccaaacgtcattCCTTGAAA-GTATAA--CGTAGGATACA----AC-CA-----ATAATACAT-----TGA-------CAAA-TTGCATTGGTGCATATT--------ATGT----G-------GTTT-TGTTATGTTTATAGAATTTGAATA
gi|12 : CAA-----TGA-------CAAA-TTGC-TCGGTGCATATTTTTTCTT-ATGC-----ATCTGGTGGTT-T--CATGTTTTTAAAATTTGAATATTGAGCTCCATTGTTAATCAC--GATAgttaatcacgataaaaa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 22222222222 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1111111111 11111 444444444444444 11111 111 2222 2222222 1111 11 22222222 11 11 1 22222 2222 1 11 1111 11 222222 11
lowQualScore : 4 55 33333333 33333333333 1 1 1 1 1 0000 555 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000 7 33 66 4 66 11111 4 1 2222222222 4 5 9999 999 5 6 5 22222 888 5 1 777777777777777 22222 66 2 000 5 8888 1 2222222 22 6 2222 6 00 6 66666666 11 11 11 8 8 3 9 99 6 3 0 55555 4 0000 3 3 4 9 3 0 33 11 7777 0 2 4 0 8 0 0 0 11 0 5 222222 8 6 6 3 4 4 1 33
lowQualScore : . .. ........ ........... . . . . . .... ... . ................................................................................ . .. .. . .. ..... . . .......... . . .... ... . . . ..... ... . . ............... ..... .. . ... . .... . ....... .. . .... . .. . ........ .. .. .. . . . . .. . . . ..... . .... . . . . . . .. .. .... . . . . . . . . .. . . ...... . . . . . . . ..
lowQualScore : 4 55 88888888 88888888888 9 0 0 6 0 6666 888 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666 4 44 11 4 11 11111 4 1 2222222222 4 0 2222 000 0 1 0 55555 888 7 0 444444444444444 55555 99 2 999 7 5555 0 7777777 00 7 3333 7 22 7 88888888 88 00 00 0 0 8 0 22 6 2 2 00000 2 8888 2 2 2 0 2 2 66 00 0000 8 2 4 8 0 8 8 8 00 6 0 888888 0 5 5 2 2 2 0 88
consensus : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACA-----AACGTGCTT-----------TNAACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCGAGGAGGGGTTA--G--A-----------A----------T-----------T--TCTNT--ATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA-----TTATT---AAATGATAATTAAGATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
Reference ( family-1647 ) : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACA-----AACGTGCTT-----------TTAACGCAGGGTACAACCANTCCCTNCGGCAATTTACTATGGACAGTGNA----GATGTCNNCGAGGAGGGGTNA--G--A-----------A----------T-----------T--TCTNT--ATACATNTAATTC-TNCAAT--AAAAAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAANAGA-----ACGAACNCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATCGTCAGA--AAGCAAACNTTTGCAATTGAGAGGA-----TTGTT---AAATGATAATTGAGATATGACGCTGGATACAACCATTCCCTGAAAGTATAA--CGTAGGATACA----ACCATTCTTAATACAATGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAGCTCCACTGTTNATCAC--GATA
gi|1 : CACCGTAGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACATGTACAACGTGATT-----------TGAACGCAGGGTACAACCATTCCTTATTGCACTTTACTATGGGTAGTGCA----GATGTCATCAAGGAGGGGTTA--G--A-----------A----------T-----------T--TCTAT--ATACATATAATTT-TATAATTAAAAAAAAATACATAGCCTATCAGGTGGCGCAAT--AAATT-TGGTT-CGAATG--ATA-----TATACTATCCGG-TAAGA--TC-C-C-TACT-ACTTGCTCAAACATCTC-AA-TACAG-TTAG-AAAAT-TT-----CGTAG---AAATTG-TTATCGG----C----------CGT-----T--TTCCTCC--T-TTGTATC--GAAAACAAA-----ACGAATCCAT-CTAAAATCAAATTACA---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAATTTTTGCAATTAAGAGGA-----TTATT---AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCCTGAAAGTATAA--CGTAGGATACA----ACCATTTTTAATACAATGACAAA-TTACATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TATTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTTATTACAAGATA
gi|10 : CCTTGAAAGTATAA--CGTAGGATACA----ACCA---ATAATACATTGACAAA-TTGCATTGGTGCATATT--------ATGT----G-------GTTT-TGTTATGTTTATAGAATTTGAATA------------GTTAATCAC--GATA
gi|11 : -----T--TTCTTCA--T-TTTTATA--GAAAACAGA-----A-GAACTCAC-CTAAACTCAAATTACG---TAAGT-GT-AAA-GACAA-------TATAATCATAAATAT--AT-ATAC-CATAATTGTCAGA--AGACAaaaa
gi|12 : CAATGACAAA-TTGC-TCGGTGCATATTTTTTCTT-ATGC-----ATCTGGTGGTT-T--CATGTTTTTAAAATTTGAATATTGAGCTCCATTGTTAATCAC--GATA
gi|13 : --AAATTCTGGTT-CGAATGATATA-----TATAACAGTCAG-TCAGA--TT-CAG-TACC-ACATGCTCAAACACCTC-AA-C---G-C-AA-ACAAT-TT-----CGTGT---AAATTaaaagt
gi|14 : CACCGTGGTCAAACGTCATTTTGGT-ACAACCATT--CCAACACAGGATAC------AACGTGCTT-----------TGAACGCAGGGTA
gi|15 : aCACCGTGGCCAAACGTCATTTGGTT-ACAACCATT--CCAACGCAGGATACA-----A
gi|16 : CACCGTGGCCAACCGTCATTTGGGT-ACAACCATT--CCAACGCAGc
gi|2 : CACCGTGGCCAAACGTAATTTCGAT-ACATCCATT--CCAACACAGGATACA-----A-CGTAGTT-----------TGAACACAGGGTACAACCATTCCTAACGGCACTTTACTATGGGCAGTGCA----AATGTCATCGAGGAGGGGTTA--G--ACAATGCCTCATA----------T-----------T--TTTCTGAATGCAAATATTTC-TTT--------AAAACTGCATAGCCTATCAGGTGACGCCATAAAAATTCTGGTTGCGACTG--ATA-----TATAACATTTGGTTCAGAATTC-C-CATACCAACTTGCTTAAACACCTCTAACTACAG------AAAAT-CTCATCACATGTTCCATATTGTATTCTGA----C----------CGTGGTCGT--TTCCTTCATT-TTTTAT---GAGAAAAAAGTAATACGAACCCGCAATAAAATCAAATTACACTCCCACTCGA-AAA-AGCAACAACAATTATGAACACAC--CTGCAC-ACAC-CACACT----AGATTAACCATACATCAGCAGCTG-GAATACAACCTTTCTCTGAAATG----TTTAAATA-------GGATACAACCATTCCT--------------------TACA----A--ATTCCTAAAGCATTG-CAAATTTGCATCAATGCCTG-TTT--CGTGATGCTATATATATAGCGTTT-
gi|3 : ttA----GATGTCATCAAGGAGGGGTTA--G--AAAATGTCTCCTA----------T-----------TCGTCTCT--ATACATTTAATTC-TTCAAT--------AATACATAGCCTATCACGTGGCGCAAT--AAATTCTGGTT-CAAATA--ATA-----TATAACATTTGG-TAAGAT-TC-C-C-TACC-ACTTGCTCAAACACCTG-AA-CACAG-T-AA-AAAAA-AT-----CGTGG---AAATTA-GTATCGG----CCGCT------CGT-----T--TTCCTCA--T-TTTTATCAAAAAAACAG------ACGATCCAAT-CTAAAATCAAATTACA---TCAGT-G--AAA-GACAA-------TATCATCACAA--AT--ATAATATACATAATTGTCAGA--AAGCAAAC-TTTGCAATTGAAAGGA-----TTATT----AATGATAATTGA-ATATGACGCTGGATACAACCATT-CTTGAAAGTATAA--CGTAGGATACA----ACCATTCTT
gi|4 : CACCGTGGCCAAATGTCATTTGGAT-ACAACCATT--CCAATGCATGATGT------AACGTGCTTGAACGCAGGGCCCGACGCAGGGTTCAACCATTCCCTGTGGCAATTTACTATGGGCAGTGCAAATCGATGTCATCGAGAAGGGGTTA--G--A-----------AAATTACTGACT-----------C--TCTGT--ATAAAT----TTCTTCCAAT---------GTACATAGCCTATC
gi|4 : aTTC-TCTA-T--AAAGAGAATA---AGCCTATCGGGTGAAGCAAC--GAATTCTGGTT-CGAATG--ATA-----TA---------------------------------TGTTCAAACACTTG-A---ACAG-T-AAGAAAAT-TT-----CGTGG---AGATTG-GTACCAG----CAGTAGCTGTTCGT-----T--TTCCTCT--T-CTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|5 : acaccgtggccaaatgtcatttggatacaaccattccaatgcatgatgtaacgtgcttgaacgcagggcccgacgcagggttcaaccattccctgtggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccac--CCTACGCAGGATACA-----ATTGTGCTT-----------TTAACGCAGACTACAACCAAGACTTTCGGCCATTTACTATGGACAGTGGA----AATGTCCGTGAGGAGGGACAAAGG--A-----------G----------TAACCCATATTTT--TCTTT--ATACGGGTAATTC-TG------AAGAAAGATT--TCGCTTCTCAAGTGACGCAAT--ATATCCCG--------------------TAGTACATTTG--TAAGT--TC-C-T-TACC-ACCTAATCAAACGCGTC-AA-TTCAGCT-AA-ACAAT-TT-----TGTAT---AAATTG-TTCTCCA----A----------CTT-----T--TTT------T-TTTTGA---GAAAATAGA-----A-GAAAAAAA-GTAAAATTTAATTACA---TCAGT-AA-AAA-GACA-----------C------A--AT--AT-GTAC-CA-AAACATCAG---ATGTAAACATTTGCAA
gi|6 : CGCCGTGGCCAGACGTCATTTGGAT-ACAAGCATT--CGTACGCAAGATACA-----AATGTGCTT-----------TTAACGCAGAGCACAACCAACCACTCTGGTAATTTACCATGGATAATGGA----GA-------GAAAGTGACCCA--T--A-----------C----------C-----------T--TTTTT--ATACAAATAATTC-TG--------AAGAAATATATAGCCTCTC---------------AATTCTGGTT-TGAATT--ATA-----TATAACATTCGG-TCAGA--TCAC-C-TATC-GCTTGCTCAAAGATC------------T-AA-A------T-----CGTGT---ATATTG-GTTTTGG----T----------AGT-----TTATTTTTAC--TATTTTA----GAAAACAGA-----A-AAAAACAC-CTAAAATTCAATTACG---TCAGT-GACAAACGACAaaaatagacaact
gi|7 : CACCG--GCCAATCGTCATTTGGAT-GCAAGCAGT--CCTGCGCAGGATACA-----ATCATACTT-----------TTA-------GTACACCCAACCACTACGGTAATTTACTATGGACAGTGGA----GATGTCCGGGAGGAGGGGTCA--GAAA-----------A----------T-----------TG-TCCAT--CTATATCTA--TG-CGTAAT----------TATA----CTATCAGGTGACGCAAC--CAATTCTTGTT-TGAATG--ATATAGTCTATAACATCCGG-TCAGA--TTAC-C-AAAC-ACTTGCTCAAACACTTC-AA-TACAG-T-AA-ACAACATC-----CGTGT---TAATTG-GTTTCGGATGTT----------CGT-----T--TTCTTt
gi|8 : TTGTCAGA--AAGCAAAC-TTTGCAATTAAGAGAA-----TTGTT---AA-TGATAATTAAGATATGATGCTGGATACAACCATTCTTTGAAAGTATAGTTCCTAGGATACATTGAACCATTCCTAATACAGTGACATA-TTGTATCGGTGCATATTTT--CTTGGTTT----GATCTGACTTTTGTGTTAGGATTTGA-AATCTGAATGTTGAACTCCACTGTTTATCAC--GATAattt
gi|9 : CACCGTG-TCAGACGTCATTTGGATTACAACCATTTTCCAACGCAGGATACA-----A-CGTGCTT-----------TTAACGCTGGGTACAACCATTCCTTATGGCATTTTGCTATGGACACTGCA----GATGTCCGTAAGGAGGGATAAAAG--A-----------A----------T-----------G--CCT-----TGTATTT--TTC-TT------------------TATCC---------ATGTAAT--AAATTCTGGTT-TGAATG--ACA-----ATTAACATTCGG-TCATA--TT-C-C---CC-ACa
Alignments
lowQualScore : 1111111 22222222222 1111 99999999999999999999999999999999999999 444444444444444 11111 1111111111 11111 444444444444444 11111 111 2222 2222222 1111 11 22222222 11 11 1 222222 111 2 11 1111 11 222222 11
lowQualScore : 4 55 8888888 1 33333333333 1 0 1 4 0000 99 66 999999 66 66666666666666666666666666666666666666 5 66 66666 4 222222222222222 55 33 0 66 4 66 11111 4 1 2222222222 4 5 9999 999 5 6 5 22222 888 5 1 777777777777777 22222 66 2 000 5 8888 2222222 22 6 2222 6 00 6 66666666 11 11 11 8 8 3 1 99 5 3 0 888888 0 777 3 3 3 7 3 0 0 11 7777 0 1 1 0 8 0 0 0 11 0 5 222222 8 6 6 3 0 0 1 33
lowQualScore : . .. ....... . ........... . . . . .... .. .. ...... .. ...................................... . .. ..... . ............... .. .. . .. . .. ..... . . .......... . . .... ... . . . ..... ... . . ............... ..... .. . ... . .... ....... .. . .... . .. . ........ .. .. .. . . . . .. . . . ...... . ... . . . . . . . .. .... . . . . . . . . .. . . ...... . . . . . . . ..
lowQualScore : 4 55 0000000 0 88888888888 0 3 6 3 6666 11 99 888888 99 55555555555555555555555555555555555555 9 99 99999 4 666666666666666 66 44 8 11 4 11 11111 4 1 2222222222 4 0 2222 000 0 1 0 55555 888 7 0 444444444444444 55555 99 2 999 7 5555 7777777 00 7 3333 7 22 7 88888888 88 00 00 0 0 8 7 22 8 2 2 888888 8 000 2 2 2 5 2 2 8 00 0000 8 4 0 8 0 8 8 8 00 6 0 888888 0 5 5 2 8 8 0 88
consensus : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACA-----A-CGTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGG--T--TA--GA-----------AAA---------T-----------T--TCTNT--ATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
Reference ( family-1647 ) : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACA-----AACGTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGG--T--TA--GA-----------A-----------T-----------T--TCTNT--ATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAAGATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
gi|1 : CACCGTAGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATACATGTACAACGTGATTTGA-----------ACGCAGGGTACAACCATTCCTTATTGCACTTTACTATGGGTAGTGCA----GATGTCATCA--AGGAGGGG--T--TA--GA-----------A-----------T-----------T--TCTAT--ATACATATAATTT-TATAATTAAAAAAAAATACATAGCCTATCAGGTGGCGCAAT--AAATT-TGGTT-CGAATG--ATA-----TATACTATCCGG-TAAGA--TC-C-C-TACT-ACTTGCTCAAACATCTC-AA-TACAG-TTAG-AAAAT-TT-----CGTAG---AAATTG-TTATCGG----C----------CGT-----T--TTCCTCC--T-TTGTATC--GAAAACAAA-----ACGAATCCAT-CTAAAATCAAATTACA---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAATTTTTGCAATTAAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCCTGAAAGTATAA--CGTAGGATACA----ACCATTTTTAATACAATGACAAA-TTACATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TATTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTTATTACAAGATA
gi|10 : CCTTGAAAGTATAA--CGTAGGATACA----ACCA---ATAATACATTGACAAA-TTGCATTGGTGCATATT--------ATGT----G-------GTTT-TGTTATGTTTATAGAATTTGAATA------------GTTAATCAC--GATA
gi|11 : -----T--TTCTTCA--T-TTTTATA--GAAAACAGA-----A-GAACTCAC-CTAAACTCAAATTACG---TAAGT-GT-AAA-GACAA-------TATAATCATAAATAT--AT-ATAC-CATAATTGTCAGA--AGACAaaaa
gi|12 : CAATGACAAA-TTGC-TCGGTGCATATTTTTTCTT-ATGC-----ATCTGGTGGTT-T--CATGTTTTTAAAATTTGAATATTGAGCTCCATTGTTAATCAC--GATA
gi|13 : --AAATTCTGGTT-CGAATGATATA-----TATAACAGTCAG-TCAGA--TT-CAG-TACC-ACATGCTCAAACACCTC-AA-C---G-C-AA-ACAAT-TT-----CGTGT---AAATTaaaagt
gi|14 : CACCGTGGTCAAACGTCATTTTGGT-ACAACCATT--CCAACACAGGATAC------AACGTGCTTTGA-----------ACGCAGGGTA
gi|15 : aCACCGTGGCCAAACGTCATTTGGTT-ACAACCATT--CCAACGCAGGATACA-----A
gi|16 : CACCGTGGCCAACCGTCATTTGGGT-ACAACCATT--CCAACGCAGc
gi|2 : CACCGTGGCCAAACGTAATTTCGAT-ACATCCATT--CCAACACAGGATACA-----A-CGTAGTTTGA-----------ACACAGGGTACAACCATTCCTAACGGCACTTTACTATGGGCAGTGCA----AATGTCATCG--AGGAGGGG--T--TA--GACAATGCCTCATA-----------T-----------T--TTTCTGAATGCAAATATTTC-TT---T-----AAAACTGCATAGCCTATCAGGTGACGCCATAAAAATTCTGGTTGCGACTG--ATA-----TATAACATTTGGTTCAGAATTC-C-CATACCAACTTGCTTAAACACCTCTAACTACAG------AAAAT-CTCATCACATGTTCCATATTGTATTCTGA----C----------CGTGGTCGT--TTCCTTCATT-TTTTAT---GAGAAAAAAGTAATACGAACCCGCAATAAAATCAAATTACACTCCCACTCGA-AAA-AGCAACAACAATTATGAACACAC--CTGCAC-ACAC-CACACT----AGATTAACCATACATCAGCAGCTG-GAATACAACCTTTCTCTGAAATG-T--TTAA-ATA-------GGATACAACCATTCCT--------------------TACA----A--ATTCCTAAAGCATTG-CAAATTTGCATCAATGCCTG-TTT--CGTGATGCTATATATATAGCGTTT-
gi|3 : ttA----GATGTCATCA--AGGAGGGG--T--TA--GA-----------AAATGTCTCCTAT-----------TCGTCTCT--ATACATTTAATTC-TTCAAT-----AA---TACATAGCCTATCACGTGGCGCAAT--AAATTCTGGTT-CAAATA--ATA-----TATAACATTTGG-TAAGAT-TC-C-C-TACC-ACTTGCTCAAACACCTG-AA-CACAG-T-AA-AAAAA-AT-----CGTGG---AAATTA-GTATCGG----CCGCT------CGT-----T--TTCCTCA--T-TTTTATCAAAAAAACAG------ACGATCCAAT-CTAAAATCAAATTACA---TCAGT-G--AAA-GACAA-------TATCATCACAA--AT--ATAATATACATAATTGTCAGA--AAGCAAAC-TTTGCAATTGAAAGGA------TTATT---AATGATAATTGA-ATATGACGCTGGATACAACCATT-CTTGAAAGTATAA--CGTAGGATACA----ACCATTCTT
gi|4 : CACCGTGGCCAAATGTCATTTGGAT-ACAACCATT--CCAATGCATGATGTA-----A-CGTGCTTGAACGCAGGGCCCGACGCAGGGTTCAACCATTCCCTGTGGCAATTTACTATGGGCAGTGCAAATCGATGTCATCG--AGAAGGGG--T--TA--GA-----------AAATTACTGAC-T-----------C--TCTGT--ATAAAT----TTCTTCCAAT---------GTACATAGCCTATC
gi|4 : aTC-TATAAA-----GAGAATA---AGCCTATCGGGTGAAGCAAC--GAATTCTGGTT-CGAATG--ATA-----TA---------------------------------TGTTCAAACACTTG-A---ACAG-T-AAGAAAAT-TT-----CGTGG---AGATTG-GTACCAG----CAGTAGCTGTTCGT-----T--TTCCTCT--T-CTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|5 : acaccgtggccaaatgtcatttggatacaaccattccaatgcatgatgtaacgtgcttgaacgcagggcccgacgcagggttcaaccattccctgtggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttc--CCTACGCAGGATACA-----ATTGTGCTTTTA-----------ACGCAGACTACAACCAAGACTTTCGGCCATTTACTATGGACAGTGGA----AATGTCCGTG--AGGAGGGA--C--AAAGGA-----------G-----------TAACCCATATTTT--TCTTT--ATACGGGTAATTC-TG-AAG-----AAAGATT--TCGCTTCTCAAGTGACGCAAT--ATATCCCG--------------------TAGTACATTTG--TAAGT--TC-C-T-TACC-ACCTAATCAAACGCGTC-AA-TTCAGCT-AA-ACAAT-TT-----TGTAT---AAATTG-TTCTCCA----A----------CTT-----T--TTT------T-TTTTGA---GAAAATAGA-----A-GAAAAAAA-GTAAAATTTAATTACA---TCAGT-AA-AAA-GACA-----------C------A--AT--AT-GTAC-CA-AAACATCAG---ATGTAAACATTTGCAA
gi|6 : CGCCGTGGCCAGACGTCATTTGGAT-ACAAGCATT--CGTACGCAAGATACA-----AATGTGCTTTTA-----------ACGCAGAGCACAACCAACCACTCTGGTAATTTACCATGGATAATG------GA-------G--AGAAAGTGACC--CA--TA-----------C-----------C-----------T--TTTTT--ATACAAATAATTC-TG-A-------AGAAATATATAGCCTCTC---------------AATTCTGGTT-TGAATT--ATA-----TATAACATTCGG-TCAGA--TCAC-C-TATC-GCTTGCTCAAAGATC------------T-AA-A------T-----CGTGT---ATATTG-GTTTTGG----T----------AGT-----TTATTTTTAC--TATTTTA----GAAAACAGA-----A-AAAAACAC-CTAAAATTCAATTACG---TCAGT-GACAAACGACAaaaatagacaact
gi|7 : CACCG--GCCAATCGTCATTTGGAT-GCAAGCAGT--CCTGCGCAGGATACA-----ATCATACTTTTA------------------GTACACCCAACCACTACGGTAATTTACTATGGACAGTGGA----GATGTCCGGG--AGGAGGGG--T--CA--GA-----------AAA---------T-----------TG-TCCAT--CTATATCTA--TG-CGTAAT------------TATA--CTATCAGGTGACGCAAC--CAATTCTTGTT-TGAATG--ATATAGTCTATAACATCCGG-TCAGA--TTAC-C-AAAC-ACTTGCTCAAACACTTC-AA-TACAG-T-AA-ACAACATC-----CGTGT---TAATTG-GTTTCGGATGTT----------CGT-----T--TTCTTt
gi|8 : TTGTCAGA--AAGCAAAC-TTTGCAATTAAGAGAA------TTGTT--AA-TGATAATTAAGATATGATGCTGGATACAACCATTCTTTGAAAGTATAGTTCCTAGGATACATTGAACCATTCCTAATACAGTGACATA-TTGTATCGGTGCATATTTT--CTTGGTTT----GATCTGACTTTTGTGTTAGGATTTGA-AATCTGAATGTTGAACTCCACTGTTTATCAC--GATAattt
gi|9 : CACCGTG-TCAGACGTCATTTGGATTACAACCATTTTCCAACGCAGGATACA-----A-CGTGCTTTTA-----------ACGCTGGGTACAACCATTCCTTATGGCATTTTGCTATGGACACTGCA----GATGTC--CGTAAGGAGGGA--TAAAA--GA-----------A-----------T-----------G--CCT-----TGTATTT--TTC-TTT------------ATCCAT---------------GTAAT--AAATTCTGGTT-TGAATG--ACA-----ATTAACATTCGG-TCATA--TT-C-C---CC-ACa
Alignments
lowQualScore : 111111 22222222222 1111 7777777777777777777777777777777777 444444444444444 11111 1111111111 11111 444444444444444 11111 111 2222 2222222 1111 11 22222222 11 11 1 222222 111 1 11 1111 11 222222 11
lowQualScore : 4 55 4 222222 4 4 1 33333333333 1 0 1 4 0000 99 66 1 66 8888888888888888888888888888888888 5 66666 4 222222222222222 55 33 0 66 4 66 11111 4 1 2222222222 4 5 9999 999 5 6 5 22222 888 5 1 777777777777777 22222 66 2 000 5 8888 2222222 22 6 2222 6 00 6 66666666 11 11 11 8 8 3 1 99 5 3 0 888888 0 777 3 3 3 0 3 0 0 11 7777 0 1 1 0 8 0 0 0 11 0 5 222222 8 6 6 3 0 0 1 33
lowQualScore : . .. . ...... . . . ........... . . . . .... .. .. . .. .................................. . ..... . ............... .. .. . .. . .. ..... . . .......... . . .... ... . . . ..... ... . . ............... ..... .. . ... . .... ....... .. . .... . .. . ........ .. .. .. . . . . .. . . . ...... . ... . . . . . . . .. .... . . . . . . . . .. . . ...... . . . . . . . ..
lowQualScore : 4 55 4 888888 4 4 0 88888888888 0 3 6 3 6666 11 99 2 99 9999999999999999999999999999999999 9 99999 4 666666666666666 66 44 8 11 4 11 11111 4 1 2222222222 4 0 2222 000 0 1 0 55555 888 7 0 444444444444444 55555 99 2 999 7 5555 7777777 00 7 3333 7 22 7 88888888 88 00 00 0 0 8 7 22 8 2 2 888888 8 000 2 2 2 0 2 2 8 00 0000 8 4 0 8 0 8 8 8 00 6 0 888888 0 5 5 2 8 8 0 88
consensus : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAA-AA-----------T---------T--------TCTNTATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
Reference ( family-1647 ) : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAA-AA-----------T---------T--------TCTNTATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
gi|1 : CACCGTAGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-ATGTACAA-C-GTGATTTGA-----------ACGCAGGGTACAACCATTCCTTATTGCACTTTACTATGGGTAGTGCA----GATGTCATCA--AGGAGGGGTTA--GAA--------------T---------T--------TCTATATACATATAATTT-TATAATTAAAAAAAAATACATAGCCTATCAGGTGGCGCAAT--AAATT-TGGTT-CGAATG--ATA-----TATACTATCCGG-TAAGA--TC-C-C-TACT-ACTTGCTCAAACATCTC-AA-TACAG-TTAG-AAAAT-TT-----CGTAG---AAATTG-TTATCGG----C----------CGT-----T--TTCCTCC--T-TTGTATC--GAAAACAAA-----ACGAATCCAT-CTAAAATCAAATTACA---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAATTTTTGCAATTAAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCCTGAAAGTATAA--CGTAGGATACA----ACCATTTTTAATACAATGACAAA-TTACATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TATTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTTATTACAAGATA
gi|10 : CCTTGAAAGTATAA--CGTAGGATACA----ACCA---ATAATACATTGACAAA-TTGCATTGGTGCATATT--------ATGT----G-------GTTT-TGTTATGTTTATAGAATTTGAATA------------GTTAATCAC--GATA
gi|11 : -----T--TTCTTCA--T-TTTTATA--GAAAACAGA-----A-GAACTCAC-CTAAACTCAAATTACG---TAAGT-GT-AAA-GACAA-------TATAATCATAAATAT--AT-ATAC-CATAATTGTCAGA--AGACAaaaa
gi|12 : CAATGACAAA-TTGC-TCGGTGCATATTTTTTCTT-ATGC-----ATCTGGTGGTT-T--CATGTTTTTAAAATTTGAATATTGAGCTCCATTGTTAATCAC--GATA
gi|13 : --AAATTCTGGTT-CGAATGATATA-----TATAACAGTCAG-TCAGA--TT-CAG-TACC-ACATGCTCAAACACCTC-AA-C---G-C-AA-ACAAT-TT-----CGTGT---AAATTaaaagt
gi|14 : CACCGTGGTCAAACGTCATTTTGGT-ACAACCATT--CCAACACAGGATAC-A------A-C-GTGCTTTGA-----------ACGCAGGGTA
gi|15 : aCACCGTGGCCAAACGTCATTTGGTT-ACAACCATT--CCAACGCAGGATAC-A------A-C-
gi|16 : CACCGTGGCCAACCGTCATTTGGGT-ACAACCATT--CCAACGCAG
gi|2 : CACCGTGGCCAAACGTAATTTCGAT-ACATCCATT--CCAACACAGGATAC-A------A-C-GTAGTTTGA-----------ACACAGGGTACAACCATTCCTAACGGCACTTTACTATGGGCAGTGCA----AATGTCATCG--AGGAGGGGTTA--GAC-AATGCCTCATATTT---------T--------TCTGAATGCAAATATTTC-TT---T-----AAAACTGCATAGCCTATCAGGTGACGCCATAAAAATTCTGGTTGCGACTG--ATA-----TATAACATTTGGTTCAGAATTC-C-CATACCAACTTGCTTAAACACCTCTAACTACAG------AAAAT-CTCATCACATGTTCCATATTGTATTCTGA----C----------CGTGGTCGT--TTCCTTCATT-TTTTAT---GAGAAAAAAGTAATACGAACCCGCAATAAAATCAAATTACACTCCCACTCGA-AAA-AGCAACAACAATTATGAACACAC--CTGCAC-ACAC-CACACT----AGATTAACCATACATCAGCAGCTG-GAATACAACCTTTCTCTGAAATG-T--TTAA-ATA-------GGATACAACCATTCCT--------------------TACA----A--ATTCCTAAAGCATTG-CAAATTTGCATCAATGCCTG-TTT--CGTGATGCTATATATATAGCGTTT-
gi|3 : ttA----GATGTCATCA--AGGAGGGGTTA--GAA-AA-----------TGTCTCCTATTCG------TCTCTATACATTTAATTC-TTCAAT-----AA---TACATAGCCTATCACGTGGCGCAAT--AAATTCTGGTT-CAAATA--ATA-----TATAACATTTGG-TAAGAT-TC-C-C-TACC-ACTTGCTCAAACACCTG-AA-CACAG-T-AA-AAAAA-AT-----CGTGG---AAATTA-GTATCGG----CCGCT------CGT-----T--TTCCTCA--T-TTTTATCAAAAAAACAG------ACGATCCAAT-CTAAAATCAAATTACA---TCAGT-G--AAA-GACAA-------TATCATCACAA--AT--ATAATATACATAATTGTCAGA--AAGCAAAC-TTTGCAATTGAAAGGA------TTATT---AATGATAATTGA-ATATGACGCTGGATACAACCATT-CTTGAAAGTATAA--CGTAGGATACA----ACCATTCTT
gi|4 : CACCGTGGCCAAATGTCATTTGGAT-ACAACCATT--CCAATGCATGATGT-A------A-C-GTGCTTGAACGCAGGGCCCGACGCAGGGTTCAACCATTCCCTGTGGCAATTTACTATGGGCAGTGCAAATCGATGTCATCG--AGAAGGGGTTA--GAA-AA-----------T---------TACTGACTCTCTGTATAAAT----TTCTTCCAAT---------GTACATAGCCTATC
gi|4 : aTC-TATAAA-----GAGAATA---AGCCTATCGGGTGAAGCAAC--GAATTCTGGTT-CGAATG--ATA-----TA---------------------------------TGTTCAAACACTTG-A---ACAG-T-AAGAAAAT-TT-----CGTGG---AGATTG-GTACCAG----CAGTAGCTGTTCGT-----T--TTCCTCT--T-CTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|5 : acaccgtggccaaatgtcatttggatacaaccattccaatgcatgatgtaacgtgcttgaacgcagggcccgacgcagggttcaaccattccctgtggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttc--CCTACGCAGGATAC-A------A-TTGTGCTTTTA-----------ACGCAGACTACAACCAAGACTTTCGGCCATTTACTATGGACAGTGGA----AATGTCCGTG--AGGAGGGACAAAGGAGTAACCCATATT---T---------T--------TCTTTATACGGGTAATTC-TG-AAG-----AAAGATT--TCGCTTCTCAAGTGACGCAAT--ATATCCCG--------------------TAGTACATTTG--TAAGT--TC-C-T-TACC-ACCTAATCAAACGCGTC-AA-TTCAGCT-AA-ACAAT-TT-----TGTAT---AAATTG-TTCTCCA----A----------CTT-----T--TTT------T-TTTTGA---GAAAATAGA-----A-GAAAAAAA-GTAAAATTTAATTACA---TCAGT-AA-AAA-GACA-----------C------A--AT--AT-GTAC-CA-AAACATCAG---ATGTAAACATTTGCAA
gi|6 : CGCCGTGGCCAGACGTCATTTGGAT-ACAAGCATT--CGTACGCAAGATACAA------A-T-GTGCTTTTA-----------ACGCAGAGCACAACCAACCACTCTGGTAATTTACCATGGATAATG------GA-------G--AGAAAGTGACC--CAT-AC-----------C---------T--------TTTTTATACAAATAATTC-TG-A-------AGAAATATATAGCCTCTC---------------AATTCTGGTT-TGAATT--ATA-----TATAACATTCGG-TCAGA--TCAC-C-TATC-GCTTGCTCAAAGATC------------T-AA-A------T-----CGTGT---ATATTG-GTTTTGG----T----------AGT-----TTATTTTTAC--TATTTTA----GAAAACAGA-----A-AAAAACAC-CTAAAATTCAATTACG---TCAGT-GACAAACGACAaaaatagacaact
gi|7 : CACCG--GCCAATCGTCATTTGGAT-GCAAGCAGT--CCTGCGCAGGATAC-A------ATC-ATACTTTTA------------------GTACACCCAACCACTACGGTAATTTACTATGGACAGTGGA----GATGTCCGGG--AGGAGGGGTCA--GAA-AA-----------T---------TG-------TCCATCTATATCTA--TG-CGTAAT------------TATA--CTATCAGGTGACGCAAC--CAATTCTTGTT-TGAATG--ATATAGTCTATAACATCCGG-TCAGA--TTAC-C-AAAC-ACTTGCTCAAACACTTC-AA-TACAG-T-AA-ACAACATC-----CGTGT---TAATTG-GTTTCGGATGTT----------CGT-----T--TTCTTt
gi|8 : TTGTCAGA--AAGCAAAC-TTTGCAATTAAGAGAA------TTGTT--AA-TGATAATTAAGATATGATGCTGGATACAACCATTCTTTGAAAGTATAGTTCCTAGGATACATTGAACCATTCCTAATACAGTGACATA-TTGTATCGGTGCATATTTT--CTTGGTTT----GATCTGACTTTTGTGTTAGGATTTGA-AATCTGAATGTTGAACTCCACTGTTTATCAC--GATAattt
gi|9 : CACCGTG-TCAGACGTCATTTGGATTACAACCATTTTCCAACGCAGGATAC-A------A-C-GTGCTTTTA-----------ACGCTGGGTACAACCATTCCTTATGGCATTTTGCTATGGACACTGCA----GATGTC--CGTAAGGAGGGATAA--AAG-AA-----------T---------G--------CCT---TGTATTT--TTC-TTT------------ATCCAT---------------GTAAT--AAATTCTGGTT-TGAATG--ACA-----ATTAACATTCGG-TCATA--TT-C-C---CC-ACa
Alignments
lowQualScore : 111111 22222222222 1111 7777777777777777777777777777777777 444444444444444 11111 1111111111 11111 444444444444444 11111 111 2222 2222222 1111 11 22222222 11 11 1 222222 111 1 11 1111 11 222222 11
lowQualScore : 4 55 4 222222 4 4 1 33333333333 1 0 1 4 0000 99 66 1 66 8888888888888888888888888888888888 5 66666 4 222222222222222 55 33 0 66 4 66 11111 4 1 2222222222 4 5 9999 999 5 6 5 22222 888 5 1 777777777777777 22222 66 2 000 5 8888 2222222 22 6 2222 6 00 6 66666666 11 11 11 8 8 3 1 99 5 3 0 888888 0 777 3 3 3 0 3 0 0 11 7777 0 1 1 0 8 0 0 0 11 0 5 222222 8 6 6 3 0 0 1 33
lowQualScore : . .. . ...... . . . ........... . . . . .... .. .. . .. .................................. . ..... . ............... .. .. . .. . .. ..... . . .......... . . .... ... . . . ..... ... . . ............... ..... .. . ... . .... ....... .. . .... . .. . ........ .. .. .. . . . . .. . . . ...... . ... . . . . . . . .. .... . . . . . . . . .. . . ...... . . . . . . . ..
lowQualScore : 4 55 4 888888 4 4 0 88888888888 0 3 6 3 6666 11 99 2 99 9999999999999999999999999999999999 9 99999 4 666666666666666 66 44 8 11 4 11 11111 4 1 2222222222 4 0 2222 000 0 1 0 55555 888 7 0 444444444444444 55555 99 2 999 7 5555 7777777 00 7 3333 7 22 7 88888888 88 00 00 0 0 8 7 22 8 2 2 888888 8 000 2 2 2 0 2 2 8 00 0000 8 4 0 8 0 8 8 8 00 6 0 888888 0 5 5 2 8 8 0 88
consensus : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAA-AA-----------T---------T--------TCTNTATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
Reference ( family-1647 ) : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAA-AA-----------T---------T--------TCTNTATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
gi|1 : CACCGTAGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-ATGTACAA-C-GTGATTTGA-----------ACGCAGGGTACAACCATTCCTTATTGCACTTTACTATGGGTAGTGCA----GATGTCATCA--AGGAGGGGTTA--GAA--------------T---------T--------TCTATATACATATAATTT-TATAATTAAAAAAAAATACATAGCCTATCAGGTGGCGCAAT--AAATT-TGGTT-CGAATG--ATA-----TATACTATCCGG-TAAGA--TC-C-C-TACT-ACTTGCTCAAACATCTC-AA-TACAG-TTAG-AAAAT-TT-----CGTAG---AAATTG-TTATCGG----C----------CGT-----T--TTCCTCC--T-TTGTATC--GAAAACAAA-----ACGAATCCAT-CTAAAATCAAATTACA---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAATTTTTGCAATTAAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCCTGAAAGTATAA--CGTAGGATACA----ACCATTTTTAATACAATGACAAA-TTACATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TATTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTTATTACAAGATA
gi|10 : CCTTGAAAGTATAA--CGTAGGATACA----ACCA---ATAATACATTGACAAA-TTGCATTGGTGCATATT--------ATGT----G-------GTTT-TGTTATGTTTATAGAATTTGAATA------------GTTAATCAC--GATA
gi|11 : -----T--TTCTTCA--T-TTTTATA--GAAAACAGA-----A-GAACTCAC-CTAAACTCAAATTACG---TAAGT-GT-AAA-GACAA-------TATAATCATAAATAT--AT-ATAC-CATAATTGTCAGA--AGACAaaaa
gi|12 : CAATGACAAA-TTGC-TCGGTGCATATTTTTTCTT-ATGC-----ATCTGGTGGTT-T--CATGTTTTTAAAATTTGAATATTGAGCTCCATTGTTAATCAC--GATA
gi|13 : --AAATTCTGGTT-CGAATGATATA-----TATAACAGTCAG-TCAGA--TT-CAG-TACC-ACATGCTCAAACACCTC-AA-C---G-C-AA-ACAAT-TT-----CGTGT---AAATTaaaagt
gi|14 : CACCGTGGTCAAACGTCATTTTGGT-ACAACCATT--CCAACACAGGATAC-A------A-C-GTGCTTTGA-----------ACGCAGGGTA
gi|15 : aCACCGTGGCCAAACGTCATTTGGTT-ACAACCATT--CCAACGCAGGATAC-A------A-C-
gi|16 : CACCGTGGCCAACCGTCATTTGGGT-ACAACCATT--CCAACGCAG
gi|2 : CACCGTGGCCAAACGTAATTTCGAT-ACATCCATT--CCAACACAGGATAC-A------A-C-GTAGTTTGA-----------ACACAGGGTACAACCATTCCTAACGGCACTTTACTATGGGCAGTGCA----AATGTCATCG--AGGAGGGGTTA--GAC-AATGCCTCATATTT---------T--------TCTGAATGCAAATATTTC-TT---T-----AAAACTGCATAGCCTATCAGGTGACGCCATAAAAATTCTGGTTGCGACTG--ATA-----TATAACATTTGGTTCAGAATTC-C-CATACCAACTTGCTTAAACACCTCTAACTACAG------AAAAT-CTCATCACATGTTCCATATTGTATTCTGA----C----------CGTGGTCGT--TTCCTTCATT-TTTTAT---GAGAAAAAAGTAATACGAACCCGCAATAAAATCAAATTACACTCCCACTCGA-AAA-AGCAACAACAATTATGAACACAC--CTGCAC-ACAC-CACACT----AGATTAACCATACATCAGCAGCTG-GAATACAACCTTTCTCTGAAATG-T--TTAA-ATA-------GGATACAACCATTCCT--------------------TACA----A--ATTCCTAAAGCATTG-CAAATTTGCATCAATGCCTG-TTT--CGTGATGCTATATATATAGCGTTT-
gi|3 : ttA----GATGTCATCA--AGGAGGGGTTA--GAA-AA-----------TGTCTCCTATTCG------TCTCTATACATTTAATTC-TTCAAT-----AA---TACATAGCCTATCACGTGGCGCAAT--AAATTCTGGTT-CAAATA--ATA-----TATAACATTTGG-TAAGAT-TC-C-C-TACC-ACTTGCTCAAACACCTG-AA-CACAG-T-AA-AAAAA-AT-----CGTGG---AAATTA-GTATCGG----CCGCT------CGT-----T--TTCCTCA--T-TTTTATCAAAAAAACAG------ACGATCCAAT-CTAAAATCAAATTACA---TCAGT-G--AAA-GACAA-------TATCATCACAA--AT--ATAATATACATAATTGTCAGA--AAGCAAAC-TTTGCAATTGAAAGGA------TTATT---AATGATAATTGA-ATATGACGCTGGATACAACCATT-CTTGAAAGTATAA--CGTAGGATACA----ACCATTCTT
gi|4 : CACCGTGGCCAAATGTCATTTGGAT-ACAACCATT--CCAATGCATGATGT-A------A-C-GTGCTTGAACGCAGGGCCCGACGCAGGGTTCAACCATTCCCTGTGGCAATTTACTATGGGCAGTGCAAATCGATGTCATCG--AGAAGGGGTTA--GAA-AA-----------T---------TACTGACTCTCTGTATAAAT----TTCTTCCAAT---------GTACATAGCCTATC
gi|4 : aTC-TATAAA-----GAGAATA---AGCCTATCGGGTGAAGCAAC--GAATTCTGGTT-CGAATG--ATA-----TA---------------------------------TGTTCAAACACTTG-A---ACAG-T-AAGAAAAT-TT-----CGTGG---AGATTG-GTACCAG----CAGTAGCTGTTCGT-----T--TTCCTCT--T-CTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|5 : acaccgtggccaaatgtcatttggatacaaccattccaatgcatgatgtaacgtgcttgaacgcagggcccgacgcagggttcaaccattccctgtggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttc--CCTACGCAGGATAC-A------A-TTGTGCTTTTA-----------ACGCAGACTACAACCAAGACTTTCGGCCATTTACTATGGACAGTGGA----AATGTCCGTG--AGGAGGGACAAAGGAGTAACCCATATT---T---------T--------TCTTTATACGGGTAATTC-TG-AAG-----AAAGATT--TCGCTTCTCAAGTGACGCAAT--ATATCCCG--------------------TAGTACATTTG--TAAGT--TC-C-T-TACC-ACCTAATCAAACGCGTC-AA-TTCAGCT-AA-ACAAT-TT-----TGTAT---AAATTG-TTCTCCA----A----------CTT-----T--TTT------T-TTTTGA---GAAAATAGA-----A-GAAAAAAA-GTAAAATTTAATTACA---TCAGT-AA-AAA-GACA-----------C------A--AT--AT-GTAC-CA-AAACATCAG---ATGTAAACATTTGCAA
gi|6 : CGCCGTGGCCAGACGTCATTTGGAT-ACAAGCATT--CGTACGCAAGATACAA------A-T-GTGCTTTTA-----------ACGCAGAGCACAACCAACCACTCTGGTAATTTACCATGGATAATG------GA-------G--AGAAAGTGACC--CAT-AC-----------C---------T--------TTTTTATACAAATAATTC-TG-A-------AGAAATATATAGCCTCTC---------------AATTCTGGTT-TGAATT--ATA-----TATAACATTCGG-TCAGA--TCAC-C-TATC-GCTTGCTCAAAGATC------------T-AA-A------T-----CGTGT---ATATTG-GTTTTGG----T----------AGT-----TTATTTTTAC--TATTTTA----GAAAACAGA-----A-AAAAACAC-CTAAAATTCAATTACG---TCAGT-GACAAACGACAaaaatagacaact
gi|7 : CACCG--GCCAATCGTCATTTGGAT-GCAAGCAGT--CCTGCGCAGGATAC-A------ATC-ATACTTTTA------------------GTACACCCAACCACTACGGTAATTTACTATGGACAGTGGA----GATGTCCGGG--AGGAGGGGTCA--GAA-AA-----------T---------TG-------TCCATCTATATCTA--TG-CGTAAT------------TATA--CTATCAGGTGACGCAAC--CAATTCTTGTT-TGAATG--ATATAGTCTATAACATCCGG-TCAGA--TTAC-C-AAAC-ACTTGCTCAAACACTTC-AA-TACAG-T-AA-ACAACATC-----CGTGT---TAATTG-GTTTCGGATGTT----------CGT-----T--TTCTTt
gi|8 : TTGTCAGA--AAGCAAAC-TTTGCAATTAAGAGAA------TTGTT--AA-TGATAATTAAGATATGATGCTGGATACAACCATTCTTTGAAAGTATAGTTCCTAGGATACATTGAACCATTCCTAATACAGTGACATA-TTGTATCGGTGCATATTTT--CTTGGTTT----GATCTGACTTTTGTGTTAGGATTTGA-AATCTGAATGTTGAACTCCACTGTTTATCAC--GATAattt
gi|9 : CACCGTG-TCAGACGTCATTTGGATTACAACCATTTTCCAACGCAGGATAC-A------A-C-GTGCTTTTA-----------ACGCTGGGTACAACCATTCCTTATGGCATTTTGCTATGGACACTGCA----GATGTC--CGTAAGGAGGGATAA--AAG-AA-----------T---------G--------CCT---TGTATTT--TTC-TTT------------ATCCAT---------------GTAAT--AAATTCTGGTT-TGAATG--ACA-----ATTAACATTCGG-TCATA--TT-C-C---CC-ACa
blockSeqs : T TT A . T T G CGCAGGGCCCG T C C AATC AT TA T AG CAATGCCTCATATTTT G AATAT T ATAAAGAGAA GC AG AA G AT TAGTC T C ATTCCCAT A T ACTA CT G C A CATCA TCC T T CAGTAGCTGTT GGTCG TA T CAT A TCAA GTAATAC CT A ACTC C AC C ACAACAAT AT AT GC A A T T TT A A CAACCT TGA A A A G T TT TTGA A T T TT G TATATA G G G T A .
blockSeqs : . . . . . . G . T A C . AT . T . AAATGTCTCCTATTCG C TTTAA . GAAGAAAGA AC AC . . . . . C TTCAGT . . ACA C . A . . . . A CCGCT . . C A . TA AC CC . G . T . A AA . . . . C T . A A . A A A A . T . . C A . . G GA . G A T A .
blockSeqs : . . . . . . A . A A G . AT . T . GTAACCCATATTTT G GGTAA . TTAAAAC AC GG . . . . . A TTCCCT . . ATT T . A . . . . A ATGTT . . C A . T A CC . A . A . A AT . . . . T C . . . . . . . . . . . . T T . . . G . . . . T .
blockSeqs : . . . . . . T . A A G . CG . A . AAATTACTGACTC T AATAA . TCAATAA AT AA . . . . . A TCACCT . . ATA T . A . . . . C C . . C T . A A AA . A . A . . . . . . . . T . . . . C G . . . A .
blockSeqs : . . . . . . T . A A C . CG . C . AAATTG T TCTA . GAAGAAA CC AG . . . . . C TTACCA . . AC T . C . . . . T A . . T C . . A AA . G . . . . .
blockSeqs : . . . . . . T . T T . . . . C . TACCT A TTT . CCAATG A . . . . . . C TCCTT . . A T . C . . . . T T . . T . .
blockSeqs : . . . . . . T . . . . A . GAATG . T . GTAAT T . . . . . . C TTCC . . . . . . . . . . . .
blockSeqs : . . . . . . . TTA T . . . . . . . .
blockSeqs : .
blockSeqCons : ****** AAATGCTTTN************************ NTAANAA******** TTCCCT**** T** TA** A****** A*****
originalCons : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAA-AA-----------T---------T--------TCTNTATACATNTAATTC-TNTAAT-----AAAAATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGA--TC-C-C-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTAT---GAAAACAGA-----ACGAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGC----GATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
finalCons : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAAAATGCTTTN------------------------TCTNTATACATNTAATTC-TNTAANAA--------TACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATG--ATA-----TATAACATTCGG-TCAGATTCCCT----ACC-ACTTGCTCAAACACCTC-AA-TACAGT--AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--T-TTTTATA--GAAAACAGAA------GAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGATGCA-----TCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
Alignments
lowQualScore : 111111 22222222222 1111 666666666666666666666 222222222 11111 11111 444444444444444 11111 111 1111 111 1111 11 22222222 11 11 1 222222 111 1 11 1111 111111111 333333 11
lowQualScore : 4 55 4 222222 4 4 1 33333333333 1 0 1 4 0000 99 66 2 66 5 888888888888888888888 5 2 66666 11 666666666 4 1 33 0 66 4 11111 66 4 4 0 4 5 0 5 999 999 5 6 5 22222 888 5 1 777777777777777 22222 66 2 000 6666 6 888 22 6 2222 6 00 6 66666666 11 11 11 8 8 3 1 99 5 3 0 888888 0 777 3 3 3 0 3 0 0 11 7777 0 1 1 0 8 0 0 0 222222222 888888 3 8 6 6 3 0 0 1 33
lowQualScore : . .. . ...... . . . ........... . . . . .... .. .. . .. . ..................... . . ..... .. ......... . . .. . .. . ..... .. . . . . . . . ... ... . . . ..... ... . . ............... ..... .. . ... .... . ... .. . .... . .. . ........ .. .. .. . . . . .. . . . ...... . ... . . . . . . . .. .... . . . . . . . . ......... ...... . . . . . . . . ..
lowQualScore : 4 55 4 888888 4 4 0 88888888888 0 3 6 3 6666 11 99 4 99 0 000000000000000000000 9 8 99999 11 444444444 7 8 44 8 11 4 11111 11 4 4 8 4 0 1 0 111 000 0 1 0 55555 888 7 0 444444444444444 55555 99 2 999 7777 7 333 00 7 3333 7 22 7 88888888 88 00 00 0 0 8 7 22 8 2 2 888888 8 000 2 2 2 0 2 2 8 00 0000 8 4 0 8 0 8 8 8 444444444 000000 2 0 5 5 2 8 8 0 88
consensus : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAA-AA-TG--------C-T----T--TTNTCTNTATACATNTAATTCTNTAAA--------AATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATGATA-----TATA--ACATTCGG-TCAG-ATTCCC-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--TTTTTAT--AGAAAACAG-AA---GAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGA--TGC-----ATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
Reference ( family-1647 ) : CACCGTGGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-A------A-C-GTGCTTTNA-----------ACGCAGGGTACAACCANTCCCTACGGCAATTTACTATGGGCAGTGCA----GATGTCATCG--AGGAGGGGTTA--GAA-AA-TG--------C------T--TTNTCTNTATACATNTAATTCTNTAAN--------AATACATAGCCTATCAGGTGACGCAAT--AAATTCTGGTT-CGAATGATA-----TATA--ACATTCGG-TCAG-ATTCCC-TACC-ACTTGCTCAAACACCTC-AA-TACAG-T-AA-AAAAT-TT-----CGTGT---AAATTG-GTNTCGG----C----------CGT-----T--TTCCTCC--TTTTTAT--AGAAAACAG-AA---GAACCCAC-CTAAAATCAAATTACG---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAACATTTGCAATTGAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCTTGAAAGTATAA--CGTAGGATACA----ACCATTCCTAATACANTGACAAA-TTGCATCGGTGCATATTTT--CTTGA--TGC-----ATCTGGCGTTT-TGTTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTNATCAC--GATA
gi|1 : CACCGTAGCCAAACGTCATTTGGAT-ACAACCATT--CCAACGCAGGATAC-ATGTACAA-C-GTGATTTGA-----------ACGCAGGGTACAACCATTCCTTATTGCACTTTACTATGGGTAGTGCA----GATGTCATCA--AGGAGGGGTTA--GAA-------------------------TTTCTATATACATATAATTTTATAATTAAAAAAAAATACATAGCCTATCAGGTGGCGCAAT--AAATT-TGGTT-CGAATGATA-----TATA--CTATCCGG-TAAG-AT-CCC-TACT-ACTTGCTCAAACATCTC-AA-TACAG-TTAG-AAAAT-TT-----CGTAG---AAATTG-TTATCGG----C----------CGT-----T--TTCCTCC--TTTGTAT--CGAAAACAA-AAC--GAATCCAT-CTAAAATCAAATTACA---TCAGT-GA-AAA-GACAA-------TATCATCACAA--AT--AT-ATAC-CATAATTGTCAGA--AAGCAAATTTTTGCAATTAAGAGGA------TTATT--AAATGATAATTAA-ATATGACGCTGGATACAACCATTCCCTGAAAGTATAA--CGTAGGATACA----ACCATTTTTAATACAATGACAAA-TTACATCGGTGCATATTTT--CTTGA--TGCG----ATCTGGCGTTT-TATTATGTTTTTAGAATTTGAATATTGAACTCCATTGTTTATTACAAGATA
gi|10 : CCTTGAAAGTATAA--CGTAGGATACA----ACCA---ATAATACATTGACAAA-TTGCATTGGTGCATATT--------A--TG---------TG--GTTT-TGTTATGTTTATAGAATTTGAATA------------GTTAATCAC--GATA
gi|11 : -----T--TTCTTCA--TTTTTAT--AGAAAACAG-AA---GAACTCAC-CTAAACTCAAATTACG---TAAGT-GT-AAA-GACAA-------TATAATCATAAATAT--AT-ATAC-CATAATTGTCAGA--AGACAaaaa
gi|12 : CAATGACAAA-TTGC-TCGGTGCATATTTTTTCTT-A--TGC-----ATCTGGTGGTT-T--CATGTTTTTAAAATTTGAATATTGAGCTCCATTGTTAATCAC--GATA
gi|13 : --AAATTCTGGTT-CGAATGATA-----TATATAACAGTCAG-TCAG-ATTCAG-TACC-ACATGCTCAAACACCTC-AA-C---G-C-AA-ACAAT-TT-----CGTGT---AAATTaaaagt
gi|14 : CACCGTGGTCAAACGTCATTTTGGT-ACAACCATT--CCAACACAGGATAC-A------A-C-GTGCTTTGA-----------ACGCAGGGTA
gi|15 : aCACCGTGGCCAAACGTCATTTGGTT-ACAACCATT--CCAACGCAGGATAC-A------A-C-
gi|16 : CACCGTGGCCAACCGTCATTTGGGT-ACAACCATT--CCAACGCAG
gi|2 : CACCGTGGCCAAACGTAATTTCGAT-ACATCCATT--CCAACACAGGATAC-A------A-C-GTAGTTTGA-----------ACACAGGGTACAACCATTCCTAACGGCACTTTACTATGGGCAGTGCA----AATGTCATCG--AGGAGGGGTTA--GAC-AA-TG--------CCTCATAT--TTTTCTGAATGCAAATATTTCTTTAAA--------ACTGCATAGCCTATCAGGTGACGCCATAAAAATTCTGGTTGCGACTGATA-----TATA--ACATTTGGTTCAGAATTCCCATACCAACTTGCTTAAACACCTCTAACTACAG------AAAAT-CTCATCACATGTTCCATATTGTATTCTGA----C----------CGTGGTCGT--TTCCTTCATTTTTTATG-AGAAAAAAGTAATACGAACCCGCAATAAAATCAAATTACACTCCCACTCGA-AAA-AGCAACAACAATTATGAACACAC--CTGCAC-ACAC-CACACT----AGATTAACCATACATCAGCAGCTG-GAATACAACCTTTCTCTGAAATG-T--TTAA-ATA-------GGATACAACCATTCCT--------------------TACA----A--ATTCCTAAAGCATTG-CAAATTTGCATCAATGCCTG-TTT--CGTGA--TGCTATATATATAGCGTTT-
gi|3 : ttA----GATGTCATCA--AGGAGGGGTTA--GAA-AA-TG--------TCTCCTAT--TCGTCTCTATACATTTAATTCTTCAAT--------AATACATAGCCTATCACGTGGCGCAAT--AAATTCTGGTT-CAAATAATA-----TATA--ACATTTGG-TAAG-ATTCCC-TACC-ACTTGCTCAAACACCTG-AA-CACAG-T-AA-AAAAA-AT-----CGTGG---AAATTA-GTATCGG----CCGCT------CGT-----T--TTCCTCA--TTTTTATCAAAAAAACAG-AC---GATCCAAT-CTAAAATCAAATTACA---TCAGT-G--AAA-GACAA-------TATCATCACAA--AT--ATAATATACATAATTGTCAGA--AAGCAAAC-TTTGCAATTGAAAGGA------TTATT---AATGATAATTGA-ATATGACGCTGGATACAACCATT-CTTGAAAGTATAA--CGTAGGATACA----ACCATTCTT
gi|4 : CACCGTGGCCAAATGTCATTTGGAT-ACAACCATT--CCAATGCATGATGT-A------A-C-GTGCTTGAACGCAGGGCCCGACGCAGGGTTCAACCATTCCCTGTGGCAATTTACTATGGGCAGTGCAAATCGATGTCATCG--AGAAGGGGTTA--GAA-AATTA--------C------TGACTCTCTGTATAAAT----TTCTTCCAA--------TGTACATAGCCTATC
gi|4 : aTCTATAAAGAG-----AATA---AGCCTATCGGGTGAAGCAAC--GAATTCTGGTT-CGAATGATA-----TAT---------GT-TCAA-A---------C-ACTTG---A-------------ACAG-T-AAGAAAAT-TT-----CGTGG---AGATTG-GTACCAG----CAGTAGCTGTTCGT-----T--TTCCTCT--TCTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttctctataaagagaataagcctatcgggtgaagcaacgaattctggttcgaatgatatatgttcaaacacttgaacagtaagaaaatttcgtggagattggtaccagcagtagctgttcgttttcctcttcttt
gi|5 : acaccgtggccaaatgtcatttggatacaaccattccaatgcatgatgtaacgtgcttgaacgcagggcccgacgcagggttcaaccattccctgtggcaatttactatgggcagtgcaaatcgatgtcatcgagaaggggttagaaaattactgactctctgtataaatttcttccaatgtacatagcctatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcctgtccacttc--CCTACGCAGGATAC-A------A-TTGTGCTTTTA-----------ACGCAGACTACAACCAAGACTTTCGGCCATTTACTATGGACAGTGGA----AATGTCCGTG--AGGAGGGACAAAGGAGTAA-CC--------CATA---T--TTTTCTTTATACGGGTAATTCTGAAGA--------AAGATTTCGCTTCTCAAGTGACGCAAT--ATATCCCG------------------TAGT--ACATTTG--TAAG--TTCCT-TACC-ACCTAATCAAACGCGTC-AA-TTCAGCT-AA-ACAAT-TT-----TGTAT---AAATTG-TTCTCCA----A----------CTT-----T--TTT------TTTTTG---AGAAAATAG-AA---GAAAAAAA-GTAAAATTTAATTACA---TCAGT-AA-AAA-GACA-----------C------A--AT--AT-GTAC-CA-AAACATCAG---ATGTAAACATTTGCAA
gi|6 : CGCCGTGGCCAGACGTCATTTGGAT-ACAAGCATT--CGTACGCAAGATACAA------A-T-GTGCTTTTA-----------ACGCAGAGCACAACCAACCACTCTGGTAATTTACCATGGATAATG---------------G--AG--------A--GAA-AG-TGACCCATACC------T--TT---TTTATACAAATAATTCTGAAGA--------AATATATAGCCTCTC---------------AATTCTGGTT-TGAATTATA-----TATA--ACATTCGG-TCAG-ATCACC-TATC-GCTTGCTCAAAGATC------------T-AA-A------T-----CGTGT---ATATTG-GTTTTGG----T----------AGT-----TTATTTTTAC--TATTT-T--AGAAAACAG-AA---AAAAACAC-CTAAAATTCAATTACG---TCAGT-GACAAACGACAaaaatagacaact
gi|7 : CACCG--GCCAATCGTCATTTGGAT-GCAAGCAGT--CCTGCGCAGGATAC-A------ATC-ATACTTTTA------------------GTACACCCAACCACTACGGTAATTTACTATGGACAGTGGA----GATGTCCGGG--AGGAGGGGTCA--GAA-AA---------------------TTGTCCATCTATATCTA--TGCGTAAT--------TATA------CTATCAGGTGACGCAAC--CAATTCTTGTT-TGAATGATATAGTCTATA--ACATCCGG-TCAG-ATTACC-AAAC-ACTTGCTCAAACACTTC-AA-TACAG-T-AA-ACAACATC-----CGTGT---TAATTG-GTTTCGGATGTT----------CGT-----T--TTCTTt
gi|8 : TTGTCAGA--AAGCAAAC-TTTGCAATTAAGAGAA------TTGTT--AA-TGATAATTAAGATATGATGCTGGATACAACCATTCTTTGAAAGTATAGTTCCTAGGATACATTGAACCATTCCTAATACAGTGACATA-TTGTATCGGTGCATATTTT--CTTGGTTTG------ATCTGACTTTTGTGTTAGGATTTGA-AATCTGAATGTTGAACTCCACTGTTTATCAC--GATAattt
gi|9 : CACCGTG-TCAGACGTCATTTGGATTACAACCATTTTCCAACGCAGGATAC-A------A-C-GTGCTTTTA-----------ACGCTGGGTACAACCATTCCTTATGGCATTTTGCTATGGACACTGCA----GATGTC--CGTAAGGAGGGATAA--AAG-AA-TG--------C------C--TTGT--------ATTT--TTCTTT------------ATCCAT---------------GTAAT--AAATTCTGGTT-TGAATGACA-----ATTA--ACATTCGG-TCAT-ATTCCC-CACa