lowQualScore : 1111111111111111111111 111111111111111111111111111111111111111111 1111111111111111111111111111 22222222222222222222222222222222 1111111111111
lowQualScore : 77777777 4444 111 1 77777777777777777777777 1 22222 1 3333333 11 1 1 11 1 44444444 6666666666666666666666 4 1 1 1 11 3333333333333333333333333 666666666666666 111 1111111111111111 333333333333333333333333333333333333333333 1111 22222222222222222 111 333333333333 1 1111 1 1 33333 1 222 44 11 222222 1 1 1 1 777777777777777777777777777777777777 1 111111 111 1 111 111 444444444 1 4444444444444444444444444444 2222222 1 22222 1 11 1 1 1 2 33 1 2222 22222 1 11 1 1 1 1 1 1 11 1 555555555555555555 222222 11 1 11 1 11 33 222 11 2222 333 22 44444444444444444444444 8888888888888888888888888888888888888 11111 111111 11111111 33333333333333333 1111 11 33333333333 1111 111 22 5555555555555555555 1111 11111111111 55555555555555555555555555555555555555555 11 1 1111 111 1 11 1 22 11 1 11 44444444 1 111 7777777777777777777777777 555555555555555 33 4444444 4444444 2 1 333 1 444444 1 2 11 1 22 1 1 55555555 44444444444444444444444444444444 1 1 22 22 66666 11 1 33 1 222 2222 1 11 4444444444444 1 4 1 1 1 1 44444444444444 1 11 22222 2 1
lowQualScore : 6 22222222 2222 111 0 2 66666666666666666666666 7 0 55555 0 9 2222222 33 0 2 3 44 0 3 11111111 4 9999999999999999999999 0 2 5 2 0 2 22 6 55 1 1111111111111111111111111 777777777777777 111 888 9999 7777777777777777 888 2 2 44 2 555555555555555555555555555555555555555555 2 8888 11111111111111111 66666 66666 66 2 55 7777 777777 5 2 111 55 99 6 666666666666 5 9999 2 3 7 55555 3 333 55 88 666666 6 3 3 3 3 000000000000000000000000000000000000 3 6 6 666666 222 7 7 3 000 6 777 888888888 3 9999999999999999999999999999 5555555 3 77777 3 88 7 3 6 3 7 3 7 7 6 3 11 3 2222 77777 3 88 3 3 3 3 3 3 88 3 7 111111111111111111 888888 88 3 6 88 3 7 88 11 333 33 0000 8 11 11 55 333 2 99 444 44 999 99999999999999999999999 4 2 33 66666 4444444444444444444444444444444444444 2 33333 2 444 2 5 33 2 2 444444 4 44 88 11111111 3 11111111111111111 6 0000 55 3 3 44 999 1 3 666 88 66666 5 5 8 8 2 00000000000 4444 2 444 2 33 2 2 0000000000000000000 1111 5 66666666666 44 77777 55555555555555555555555555555555555555555 55 3 66 3 6 6666 3 3 222 55 5 55 8888 3 33 9 5 33 33 3 88 0 999 6 55555555 3 999 0000000000000000000000000 1 3 333333333333333 55 4444444 4444444 0 5 555 5 4 4 333333 5 0 4 88 88 5 66 3 3 00000000 66666666666666666666666666666666 3 3 55 55 7 7 77777 6 88 5 11 6 5 444 9999 6 6 7 88 0 88 1 6666666666666 3 0 0 0 3 0 3 88888888888888 3 88 66666 0 0
lowQualScore : . ........ .... ... . . ....................... . . ..... . . ....... .. . . . .. . . ........ . ...................... . . . . . . .. . .. . ......................... ............... ... ... .... ................ ... . . .. . .......................................... . .... ................. ..... ..... .. . .. .... ...... . . ... .. .. . ............ . .... . . . ..... . ... .. .. ...... . . . . . .................................... . . . ...... ... . . . ... . ... ......... . ............................ ....... . ..... . .. . . . . . . . . . . .. . .... ..... . .. . . . . . . .. . . .................. ...... .. . . .. . . .. .. ... .. .... . .. .. .. ... . .. ... .. ... ....................... . . .. ..... ..................................... . ..... . ... . . .. . . ...... . .. .. ........ . ................. . .... .. . . .. ... . . ... .. ..... . . . . . ........... .... . ... . .. . . ................... .... . ........... .. ..... ......................................... .. . .. . . .... . . ... .. . .. .... . .. . . .. .. . .. . ... . ........ . ... ......................... . . ............... .. ....... ....... . . ... . . . ...... . . . .. .. . .. . . ........ ................................ . . .. .. . . ..... . .. . .. . . ... .... . . . .. . .. . ............. . . . . . . . .............. . .. ..... . .
lowQualScore : 0 55555555 5555 000 0 5 22222222222222222222222 0 0 00000 0 8 5555555 22 0 5 3 00 7 3 00000000 0 5555555555555555555555 0 5 5 3 0 5 55 7 99 4 1111111111111111111111111 000000000000000 777 555 6666 4444444444444444 777 7 7 44 7 999999999999999999999999999999999999999999 5 2222 88888888888888888 22222 22222 55 5 99 8888 222222 0 7 222 22 22 7 888888888888 0 3333 0 3 3 77777 3 333 00 33 000000 7 3 3 3 3 777777777777777777777777777777777777 3 7 7 000000 333 3 3 3 777 7 777 333333333 3 7777777777777777777777777777 3333333 3 77777 3 33 3 3 7 3 3 3 3 3 7 3 77 3 7777 77777 3 33 3 3 3 3 3 3 33 3 3 777777777777777777 000000 33 3 7 33 3 3 33 33 333 88 5555 0 88 66 55 666 7 00 777 33 555 66666666666666666666666 7 4 22 22222 7777777777777777777777777777777777777 5 11111 5 444 5 0 44 5 9 999999 2 22 55 22222222 7 66666666666666666 7 9999 66 3 3 66 222 0 3 444 66 77777 0 6 0 0 8 11111111111 2222 2 888 8 99 9 9 8888888888888888888 1111 2 77777777777 22 77777 55555555555555555555555555555555555555555 00 1 33 3 8 7777 3 6 777 00 5 00 2222 7 88 8 5 88 88 3 33 7 333 7 33333333 3 000 3333333333333333333333333 0 7 333333333333333 55 5555555 5555555 0 5 000 5 0 0 000000 5 0 0 55 00 5 00 3 3 77777777 00000000000000000000000000000000 3 3 77 77 3 0 33333 7 33 0 00 7 3 777 3333 7 7 0 33 7 33 0 7777777777777 3 0 0 0 2 0 3 77777777777777 3 33 00000 0 5
consensus : GGTGGTAGTTATTAAAAAAAAAAAAAAATAATCACCGATA-T-CAATT-AAACTAA---------CA------------TATAG-CCA-----GTTTT-ATTAATTTT-------AAACTA-TTTCCATTCGCCTCTTATTAA-TTTCAGTTAATAAATTC-CGAT-TTTAT-TGTTAATTAGTCAAGNAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCNATCTGTTGGGAC-GCATCG-TTGAT-GAATG-TTTTCAAC---T--A-TTTG-TT--CAGT---TAACGTA---AT--TGTATC-TAAAGAA---AAA---TAA----GTGT-----GT---------CTA-T-CC-CAG-AT-CA-GA-----T-ATTT--TT-AAAAAA--------ATAA-AG--GA-AAAA-GGGGGG--GGG--T-GGC--C---GTGAT-----C-----C-NT-G--C----C------CCAAGT-GC-CT--GTGA-TT--A-CAAAAAAAAA---N-TGTTG--GTAA-CTT-TT-AAAATCCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACG---------T-GAA--GCAAAA----GT--------GATGATTTTAATT-GGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTAT--AGTAC--CGGTATTAAAAA-TAATTCTTACT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTT-AAGAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGT--TTTTCACA-TG-TCGTTCT-ATTC-ATAA-GTTAT-GAATAGAAT--TGCT-ATGATTTTTATGA-TTC-----GGC------AACGAATATTTA-AA-TCTTC--GTACAATGAGACCG-GTTTTGCAGTCT--ATT-TATTTC--GGAATT-TTGT---GACAC--GTG---TTTTGT-TTAATATTTGCCT--CAC---AGGC-ACTT--GG---GG-CA-N-GGAT-----C-AT----G---------AC-CCC-CCCCCCT--T-----TTTTTTTC----T-T-TTC-----TTTAT----TA--------AAAAT-T---CTGAT-CT---G-GG-ATAGA--C-AC-ACTT---ATT--TT--TTCTTT--------TCTACGTTANT------AA----TA-T-TT-TG-TA-AATAT-GC-A-T--TAA---AGAT-CAT---C--CA---AAATG-TTATTTTTCCTCTC-TG-TCACGTATNT---------TCA----TTGACACTATAAGGGGGCAT-GGATC-A-TG---------------CACGACC----CCCCCCC----C------TTTTT--T-----TTT-----T----------------A-----------A------TTC-TGAT-CTGG-G-ATAGA-CA-CAC-TTA-TTT---TT--CTTTTCTACGTTAATTA--TGTT--C-AAGTGTCT--GTGATATTTTGCCG-TGTA--ATTTT-CA--GTCTAGCTTTATGCACANAGTACGATATTTTTCTTCATCA---TTTGTCA-TGGTGTG--TATCATTG-AAC---ATCNAC-T-GTAA--CTATTGCATNAT-----ATATT---G-AAATACATTGTGCCCAAAATCGGGAATATAAATTACTTTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCNAAANACATAATTTATATATTACATGTTTGNGGCGTATNNATATCATGGTAGTG-TTCTGTGG-TATTCCGG----TGGTAAAA-----------------ATACGTTCCC-T-GTGAT-CTG-CCCAAACT-GAGAAATGG-ACAACGAATGAGAGGC-----GCGAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTTGG-TCG-T-TTTTT--TCCCATTTCAATTCGTACTGGTCAGACGAGTTCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGCCGC-CNT-AAT------CA-GGGG--AGATAACAGCCGNCGGGTATCGTAGAGAAAAGTACNCCATT
Reference ( gi|1 ) : GATGGTAGTTA--------AAAAAAAA----TCACTGATA-T-CAATT-AAACTAA---------CA------------TATAG-CCA-----GTTTT-ATTAATTTT-------AAACTA-TTTCCATTCGCCTCTTATTAA-TTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGACGTACAAGTATGGGGACTTGCCATCTGTTGAGAC-ACATCG-TTGAT-GAATG-TTTTCAAC---T--A-TTTG-TT--CAGT---TAACGTA--CAT--TGTATC-TAAAGAA---AAA---TAA----GTGT-----GT---------CTA-C-CC-CAG-AT-TA-GA-----T-ATTT--TT-AAAAAA--CCGTGGATAATAGT-GATAAAA-GGGGAA--GGG--T-GGC--C---GTG-T-----C-----C-TT-G--C----C------CCAAGT-GC-CC--GTGA-TT--A-CAAAAAAAAA---T-TGTTT--GTAACCTT-TTAAAAAGCCC-TGATCTAAAAA----TATT-CAGTAT---CCAT--ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACG---------T-GAA--GCAAAAT---GT--------GATGATTTTAATT-GCTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTAT--A-TAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACACAAGGTT--AAGAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGT--TTTTCACA-TG-TCGTTCT-ATTC-ATAA-GTTAT-GAATAGAAT--TGCT-ATGATTTTTATGA-TTC-----GGC------AACGAATATTTA-AA-TGTTC--GTACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATTATTGT---GATAC--GTG---TTTTGT-TTAATATTTGCCT--CACT-GAGGC-ACTT--GG---G--CA-A-GGAT-----C-A-----G---------AC-CCC-CCCCCTT--T-----TTTTTTTC----T-T-TTC-----TTTAT----TA--------AAAAT-T---CAGAT-CT---G-GG-ATAGA--C-AC-ATGT---ATT--TT--TTCTTT--------TCTACGTTAAT------AA----TA-T-TT-TG-TA-AATAT-TC-A-T--TAA---AAAT-CAT---C--CA---ACATG-TTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCA--GGATC-A-TG---------------CATGACC----CCCTCCC----T------TTTTT--T-----TTT-----T----------------A-----------A------TTC-AGAT-CTGA-G-ATTGA-TG-CAC-TTA-TTT---TT--CTTTTCTACGTTGATTA--TGTT--C-AAGTGTCT--GTGATATTTTGCC--TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC---AAC---ATCTACAT-GTAA--CTATTACATGAT-----ATATT---A-AAATACATTGTGCCCAAAATTGGAAATA-AAATTAC-TT----GTAGTTATGATAAA----TA-ACAAAT-AAACGTTAA---TTATTTTTAAAAAACATAATTTATATATTACAT-TTTGAGGCGTATATATATCATA-TAGTG-TTCTGTGG-TATTCCGG---GTGGTAAAA-----------------A--------------GAT-CTG-CCCAAACT-AAGAAATGA-ACAACGAATGAGAGTCACTGAGCGAGAG--TATCGGGACGCAAACAAGAAATTAATTGAAAGGTGAATACGGTTTCCGTTTGGTTCG-TGTTTTT--TCCCATTTCAATGTGTACTGGTCTGATGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCG-CATTACT-CTTGGT-CCCTACTTC-CGACA-GCGCCAC-CCTGAAT------CA-GGGG--AGATAACAGCTGAC-GGTATCGT-GAGAAAAGTACCCCATT
gi|2 : GGTGGTAGTTA--------AAAAAAAAATAATCACCGATA-T-CAATT-AAACTAA---------CA------------TATAG-CCA-----GTTTT-ATTAATTTT-------AAACTA-TTTCCATTCGCCTCTTATTAA-TTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTA----G-CAAGTAGATAATG----------------------GGGACT-GCCATCTGTTGAGAC-ACATCG-TTGAT-GAATG-TTTTCAAC---T--A-TTTG-TT--CAGT---TAACGTA--CAT--TGTATC-TAAAGAA---AAA---CAA----GTGT-----GT---------CTA-C-CC-CAG-AT-TA-GA-----T-ATTT--TTAAAAAAA--TCGTGAATAATAGT-GATAAAA-GGGGAA--GGG--T-GGC--C---GTG-T-----C-----C-TT-G--C----C------CCAAGT-GC-CC--GTGA-TT--A-CAAAAAAAAA---A-TGTTG--TTAA-CTT-TTAAAATACCC-TGATCTAAAAA----TATT-CAGTAT---CCATG-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGTGAAGACGTT-GAA--GCAAAAA---GT--------GATGATTTTAATT-GGTTGCAATGA-TTTCTTTGC--TTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAG-AATTATAGTATGAATTAGAAAGATCCTT-T-GTATTAA-TA---CGGTATTAAAAA-TAATTCTTA----------------------------AAAT-AACA--TCATTT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATA-ATATC-AAATAGTTT---ACACAAGGTT--TAAGATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGT--TTTTCACATTG-TCGTTCT-ATTC-ATAA-GTTATGGAATAGAAT--TGCT-ATGATTTTTATGA-T-------GGC------AACGAATATTTA-AATTCTTC--GTACAATGAGACCA-GTTTTGCTGTCT--ATT-T-TTTC--AGAATT-TTGT---GATAC--GTG---TTTTGT-TTAATA-TTGCCT--CACT-GAGGC-ACTTG-GG---G--CA-A-GGAT-----C-AT----G---------AC-CCC-CCCC-----T-----TTTTTTTC----T-T-TTC------TTAT----TA--------AAAAT-T---CAGAT-CT---G-GG-ATAGA--C-AC-ACGT---ATT--TT--T--CTT--------TCTACGTTAAT------AA----TA-T-TT-TGTTA-AATAT-GC-A-T--TAA---AAAT-CAT---C--CA---ACATG-TTA-TTTTCCTCTC-TG-TCACGTAT-T---------TCA----TTGACATTATAAAGGGGCA--GGATC-A-TG---------------CATGACC----CCC-CCC----C------CTTTT--T-----TTT-----T----------------A-----------A------TTC-AGAT-CTGA-G-ATAGA-TG-CAC-TTA-TTT---TT---TTTCTTACGTTGATTA--TGTT--C-AAGTGTCT--GTGATA-TTTGCC--TGTA--ATTTT-CA--GTCCAGCTTTATGCACACA-TACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC----AC---ATCTACAT-GTAA--CTATTACATGAT-----ATATT---GTAAATACATTGTGCCCAAAATTGGAAAT--AAATTACTTT----GTAGTTATGATAAA----TA-ACAAAT-AAACG-TAA---TTA-TTTTAAAATACATAATTTA-ATATTACATGTTTGAGGCG--TATATATCATG-TAGTG-TTCTGTGGTTATT-CGG-----GGTAAAA-----------------ATACGTTCCCTTGGTGAT-CTG-CCCAAACT--AGAAATG--ACAACGAATGAGAGTC-CTGAG-GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTTGG-TCG-TATTTTT----CCATTTCAATGTGTA-TGGTCAG-TGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGCCAC-CT--AAT------CAGGGGG--AGATAACAGC-GAC-GGTATCGT-GAGAAAAGTACACCATT
gi|4 : GGTGGTAGTTATTAAAAAAAAAAAAAA----TCACTGATAAT-AAATT-AAA-TAC---------TA------------T-TCG-CCA-----GTTTT-ATTAATTTT-------AAACTA-----------CCCCAGATTAA-TTTCA-TTAAAAAAtcagtcgttat
gi|7 : aatggccaacttctattgcggttatttcccttgcgcggaagtatggcggggctagtggagtagggaaccaaaagtaaacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcATA-TGCAATTTAAACTAAGCAAATCCCCA------------TGCAGTCCATGGCCGTTTTCATTATTTTTTGAAGAAAAACTAATTTCCATTCGCCTCTTATTAAATTTAAGTTAATAAATTCGCAAT-TGTACATGT-AATTAGTCAAGAAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCAA-CTGTTTGAACGACATCGCTTGATTGCATG-TTTTCAAC---T--AGTTTGGTT--C-GT---TAAGGTA----T--TGTATT-TAGAGAA---AAT---AAA----GTGT-----GGG--------CTA-G-T----G-TC-TA-GA-----T-AT-------AAAAAA----GACAATAATAGTTGATAAAG-GTGGTG--GAGA-T-GGCGTT---GTG-T-----C-----A-TG-A--C----CATTTCGCCAAGT-GC-TT---TGA-TT--A-CAAAAA
gi|20 : attgtttgaaactctattccacatgggtcattgatgaaattgatgcatATA-T-CAGTT-AAACTAA---------CAAATCCATGCATTTATAG-CCA-----GTTTT-ATTA-TTTT-------AAACTA-TTTCCATTCGCCTCTTATTAA-TTTCAGTTAATAAATGT-AGATATTTAT-TG
gi|2 : ttTGTTG-GAT-G-ATTT-TTAAT-GCATA-TTT--AAC---A--A-AATA-TT----AT---TAACGTA--------G------AAAGAA---AAA---TAC----GTGT-----GT---------CTA-T-CC-CAG-AT-CT-GA-------ATTT--TT-AATAA--------GAAAA-----GAAAAAA-AAGG----GGG--G-GGT--C---ATGAT-----C-----C-TT-G--C----C------CCAAGT-GC-CTCAGTGA-g
gi|15 : ggtggtagttaaaaaaaaaataatcaccgatatcaattaaactaacatatagccagttttattaattttaaactatttccattcgcctcttattaatttcagttaataaattccgatctcattgttagcaagtagataatggggactgccatctgttgagacacatcgttgatgaatgttttcaactatttgttcagttaacgtacattgtatctaaagaaaaacaagtgtgtctaccccagattagatatttttaaaaaaatcgtgaataatagtgataaaaggggaagggtggccgtgtccttgccccaagtgcccgtgattacaaaaaaaaaatgttgttaacttttaaaataccctgatctaaaaatattcagtatccatgatgttgtcctgactttgaacatagacgtgaagacgttgaagcaaaaagtgatgattttaattggttgcaatgatttctttgcttttttcattgtccgattgaaagattagaaggtgacagaattatagtatgaattagaaagatcctttgtattaatacggtattaaaaataattcttaaaataacatcatttttaaattccaaatattgacgaattttgccatcaataatatcaaatagtttacacaaggtttaagattaaacatcgtatgatgcatatattgacgaaaactaagtttttcacattgtcgttctattcataagttatggaatagaattgctatgatttttatgatggcaacgaatatttaaattcttcgtacaatgagaccagttttgctgtctattttttcagaattttgtgatacgtgttttgtttaatattgcc-ACATTT-CTGAT-GA----CTTTTAATGCAT--A-TTTG-----CA------AACATA--AAT-----AACGTAGAGAATAAAAA---CAA----GTGT----------------CTA-T-CC-TAG-AT-CA-GA-------ATT------GAAAAA--------------------AAAA-GGGG----GGG--G-GGT--C---ATGAT-----C-----C-AT-G--C----C------CCAGGT-GT-CT--GTGC-TTTCA-CCATGAAAAA---tgttattttcctctctgtcacgtatttcattgacattataaaggggcaggatcatgcatgacccccccccctttttttttaattcagatctgagatagatgcacttattttttttcttacgttgattatgttcaagtgtctgtgatatttgcctgtaattttcagtccagctttatgcacacatacgatatttttcttcattaaattttgtcatggtgtgcatcacacatctacatgtaactattacatgatatattgtaaatacattgtgcccaaaattggaaataaattactttgtagttatgataaataacaaataaacgtaattattttaaaatacataatttaatattacatgtttgaggcgtatatatcatgtagtgttctgtggttattcggggtaaaaatacgttcccttggtgatctgcccaaactagaaatgacaacgaatgagagtcctgaggagagtatcgggacgcaaacaagaacttattgaaaggtgaatacggtttccgtttggtcgtatttttccatttcaatgtgtatggtcagtgagtccgatcgccggttgccagtacattcacactacgcgtcgccattactcttggtccctacttccgacagcgccacctaatcagggggagataacagcgacggtatcgtgagaaaagtacaccatttcagtcgttat
gi|18 : cAT-GAATG-----CA-----T--A-TTTA-----CAG-----AACATA---ATAACGTAG---AAAAGA---AAA---TA-----GTGTC----AT---------CTA-T-CC-CAG-AA-CA-GA-------ATTT-----AAAAAA----------AA--------AAAA-GGGGGG--GGG--T------C---ATGAT-----C-----C-AT-G--C----C------CCAAGT-GC-CT--Gt
gi|14 : T-GAATGATCTTTAA----T--G-CTTA-CTTACAAT---TAACGTA--GA-----------AAAGAACTAAAA---TAA----GTGT-----GT---------CTA-T-CC-CAG-AT-CA-GA-------ATTT--TT---------TTTTTTATAATA---AAT--AG-GGGGAAGGGGG--TGGGT--C---ATGAT-----C-----C-AT-GC-C----C------CCAAGT-GT-CT--GTGG-GT--A-CAtgatcaccca
gi|3 : G-TTTTCAAG---TTAA-TGTG-TT--CAGTGTTTAACGTAGGTAT--TGTATCGTAAAGAA---AA----TAA----G-GT-----GTAGTGGGTTCCTA-C-CC-CTG-AT-TA-GA-------ATT-----------A----GCGGATAA-AG------AGA-GGTGGA--GTG----GGC--CTGTGTG-T-----CATGACC-TT-G--C----C------C-AAGTTGC-CT--GTGAGTT--AACAAAGAGAAA---CGTGGTCCGGTAAACTTGTTTAGAATCCCGTGA-ATAAAAAAACGTATTTCAGTATTGACCATTTATGGGTTGGT-CGCTTGA-TT-TGAATCACTATGACG---------T-GGAAGGCAGAATTGGGTTGCTAAGAAATGATTTCAGTTTGCTT-C------TTTTTTT--TTTTTTTTGATTGTCAGATTGAA-GATTAGAAGGTGAACAGAG-TTATAGTATGAATAAGAAAGATCCTTGT-GTAT--AGTATGACGGTATTAAAAA-TAATTCTTACTGGAAATGGTGTATCACTGTACCGTGCAAATTCA-AGGTCA-TTGCTT-TTCATTCCAAATGATTGACTGGAATTTCTGCCATCATATATATATTGAAATAGTTTCACACA--AGGTTTAAAGAATTTTAACATGGTAAAT-TATGCATTTAACTATTGACGAAAAC-TAAGTTGTTTTCACA-TGTTTGTTCTAATTCAATAA-GTTAT-AAATAGGATAATGCTAATGATTTTTATGA-TTCTGCAAGGCGACATTAACGAACATTTAGAA-T-TTCGAGTACACTGAGACCGTGTTTTG-AGTTTTAATTATATTTCCAGGAATTTTTGT---GACAC--GTGTGTTTTTGTGTTATTATTTGCC---CAC---AGGC-AGTT--GG---GGCCA-ACGGATGCTTGC-------G---------CC-CCC-CCCCCCT--T-----TTCTTTCC----------C-----TTTAT----TA--------AAAAA-T---CAGAT-GT---G-GGAATAGGACC-ACAATGTTAAATT--TT--TTC-TT--------TCTACGTTAAT------AA----TATT-TT-TG-T--AATAT-GCTA-T--TAA---AAAT-CATGGGC--TACAGGCATG-TTAGTTTNNNNNNN-NN-NNNNNNNNNN---------NNN----NNNNNNNNNNNNNNNNNNN--NNNNN-N-NNNNNNNNNNNNNNNATCATTACCCCTCCCCCCCC----TACCCTGTTGTT--T-----TTC-----T----------------AAG---------A------TTCAAGAT-CTGA-G-ATAGATTA-CAC-TTA-TTT---TTGCTTTTTCTACGTTAAATA--TGgaatg
gi|3 : AAAGAA---AAAATTTAACATTGTG------GTC--------CTATT-CC-CAC-AT-CT-GA-----T--TTT--TT-AATAAA------GGG-AA-AG-----AAAA-GGGGGG--GGG----GGCG-CAA-GCA-T-----C-----CGTTGG--C----C------CCAACT-GC-CT--GTGc
gi|12 : gttttcaagttaatgtgttcagtgtttaacgtaggtattgtatcgtaaagaaaataaggtgtagtgggttcctacccctgattagaattagcggataaagagaggtggagtgggcctgtgtgtcatgaccttgcccaagttgcctgtgagttaacaaagagaaacgtggtccggtaaacttgtttagaatcccgtgaataaaaaaacgtatttcagtattgaccatttatgggttggtcgcttgatttgaatcactatgacgtggaaggcagaattgggttgctaagaaatgatttcagtttgcttctttttttttttttttgattgtcagattgaagattagaaggtgaacagagttatagtatgaataagaaagatccttgtgtatagtatgacggtattaaaaataattcttactggaaatggtgtatcactgtaccgtgcaaattcaaggtcattgcttttcattccaaatgattgactggaatttctgccatcatatatatattgaaatagtttcacacaaggtttaaagaattttaacatggtaaattatgcatttaactattgacgaaaactaagttgttttcacatgtttgttctaattcaataagttataaataggataatgctaatgatttttatgattctgcaaggcgacattaacgaacatttagaatttcgagtacactgagaccgtgttttgagttttaattatatttccaggaatttttgtgacacgtgtgtttttgtgttattatttgccAAAGAA---AAAA--TAA----GTGT-----GT---------CTA-T-CCTCAG-AT-AA-GA-------ATTT--TT-AAAAAA---------TAAAAA-----AAAAGGGGGGG--GGG--T-GGT--C---ATG-T-----C-----C-AT-GATCCATGC------CCAAGT-GCTCT--GTGA-ctacgttaataatatttttgtaatatgctattaaaaatcatgggctacaggcatgttagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcattacccctcccccccctaccctgttgtttttctaagattcaagatctgagatagattacacttatttttgctttttctacgttaaatatgc
gi|17 : taaatgtttcctaatctaggtctacttcacatataggAAAGAA---ATA---TAA----GTGT-----GT---------CTA-T-CC-CGA-AT-CA-GAATTTTT-ATTT--TT-TAAAAA--------------------AAAA-GGAGGG--GGG--T--GT--C---ATGAT-----C-----C-AG-G--C----C------CCAAGT-GC-CT--GTGtctacgttattaatttgcatttaagatcatccaaaaa
gi|11 : gcaacatttttttctagcgtttattgttttgggAAAGAA---AAA---TAAT---ACGT-----AT---------CTA-T-CC-CAGAAT-CAGGA-----TAATTT--TT-AAAA----------ATAA-----GAAAAAA-AGAGAGT-GGG--T-GG-------GTA-TAGATCC-----C-AT-G--CT---C------CCAAGTCGC-CT--Gtc
gi|13 : AAGCA---AAA---TAA----GTGT-----GT---------CTT-T-AC-CAG-AT-CC-GA-------A-----TT-AAAAAA--------AAAAAAGT-G---GGG-GGGGGG--GGG--T-GTC--A---TTA-C-----C-----C-AT-G--C----C------CCAAGT-GC-Ctctacgtactaacttttagttctgctataatatgccattctaattgagatcatcttcacaagtaatggtcacgctcttgttcatgtatctttattaca
gi|22 : acatgtatttaattgaatatacctA---TAT----GTGTCTCTGGT---------CTA-T-CC-CAA-AT-CA-GA-----A-AT-------ACAAAA--------ATAAT--T-G-------GGGGGG--GGG--T-G-T--C---ATGAT-----C-----C-AT-G--C----C------C-AAGT-GC-CT--GCGctttcctacgttattagttgttgaaatatgcacttaaagataccaaga
gi|5 : GT-----GT---------CTA-TGCC-CAG-ATCTG-GA-----T-TTTA--AT-AAGAAA------AGAGAA-AG---AAAAAA-GGGGGA--GGGGGC-GGC--A---ATGAT-----C-----C-TT-G--C----C------CCAAGT-
gi|5 : taccccagattaatttcattaaaaaaaaccgtgaataatagtgataaaggggaagggtggccgtgtccttgccccagtgccgtgttacaaaaaaaaaaaattgttggtaacttttaaaatccctgatctaaaatattcagtatccattatgttgttcctgacttgtgaacatagacgttgaagcaaaagtgatgattttaattggttgcaatgaatttctttgcttttttttctgtccgattgaaagattagaaggtgacagaaattatcgtatgatttgaagatccttttgtataataccggtattaaaaaataattcttattaaatcaatcatttctaaattccaaatattgacgatattgcatcaatatatatcaatgtttcacacaagggtttaagaattaaacatcgtattgatgcatatgttgacgaaaacataagtttttaccatgtcgttctattcataaagttatgaatagaattgctatgattttatgagttcggcaacgaatatttagattttcgtacaatgagaccagttttgcagtctatttatttcagaatttgtttggatactggtttttgtttaatatttgcctcactatgTA-C-CC-CAG-AT-TA----------ATTTCATT-AAAAAAAACCGTGAATAATAGT-GATAAA--GGGGAA--GGG--T-GGC--C---GTG-T-----C-----C-TT-G--C----C------CCA-GT-GC-C---GTG--TT--A-CAAAAAAAAAAAAT-TGTTG--GTAACTTT-T--AAAATCCC-TGATCTAAAA-----TATT-CAGTAT---CCATT-ATG--TTG-TTC--CTGACTTGTGAA-CA-TA-GACG---------TTGAA--GCAAAA----GT--------GATGATTTTAATT-GGTTGCAATGAATTTCTTTGCTTTTTTTTC--TGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATCGTATGATTTG--AAGATCCTT-TTGTAT--AATAC--CGGTATTAAAAAATAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---TCTAAATTCCAAAT-ATTGAC--GA-TAT-TGC-ATCA-ATATATATC-AA-T-GTTTCACACA-AGGGTTT-AAGAATTA-AACATCGTA--TTGATGCAT---A-TGTTGACGAAAACATAAGT--TTTTACCA-TG-TCGTTCT-ATTC-ATAAAGTTAT-GAATAGAAT--TGCT-ATGA-TTTTATGAGTTC-----GGC------AACGAATATTTA-GA-TTTTC--GTACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAAT--TTGTTTGGATACTGGT----TTTTGT-TTAATATTTGCCT--CACT-ATG---ACTTG-GG---G--CA-A-GGAT-----C-ATTGCCG---------CC-CCCTCCCCCTT--T-----TTTCTTTC----TCT-TTT-----CTTAT----T---------AAAAT-C---CAGAT-CT---G-GGCATAGA--C-AC-tcgtgaaacagagggatacacaaacaacat
gi|8 : AAAA-GGGG----GGG--G-GGT--C---AAGAT-----T-----C-TT-G--T----C------CTAAGT-GT-CT--GTGA-Ttcgtgaaacagagggatacacaaacaacat
gi|13 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaACAT--GTA---TTTAAT-TGAATAT--ACCTGGCACTTGGGGC-A--T--GG---G--TA-A-TGAC-----------------------AC-CCC-CCCCCCC--C-----CACTTTTT----T-T-TTT-----TT-------------------AAT-T---CGGAT-CT---G-GT-AAAGA--C-AC-ACTT---ATT--TTGCTTCTTT--------CCTACGTTATT------AG----T--T-GT-TG--A-AATAT-GC-ACT--TAA---AGAT-atttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|5 : ---TTTTTT-TT----TTTGTAA--CAC----GGC-ACTG--GG---G--CA-A-GGACA----C-G-----GCC-------AC-CCT-TCCCCTT--TATCACTATTATTCACGGT-T-TTT-----TTTAA----T---------GAAAT-T-----AAT-CT---G-GG-GTAaccaaga
gi|14 : CC--CAC---AGAC-ACTT--GG---GGGCA-T-GGAT-----C-AT----G---------AC-CCA-CCCCCTT--C------------C----C-C-CTA-----TTTAT----TATAAAAAAAAAAAT-T---CTGAT-CT---G-GG-ATAGA--C-AC-ACTT---ATT--TTAGTTCTTT--------TCTACGTTAA-------------------T-TG-TA-AGTAA-GC-A-T--TAA---AGAT-CAT---T--CA---GAATG-attgttggtaacttttaaaatccctgatctaaaatattcagtatccattatgttgttcctgacttgtgaacatagacgttgaagcaaaagtgatgattttaattggttgcaatgaatttctttgcttttttttctgtccgattgaaagattagaaggtgacagaaattatcgtatgatttgaagatccttttgtataataccggtattaaaaaataattcttattaaatcaatcatttctaaattccaaatattgacgatattgcatcaatatatatcaatgtttcacacaagggtttaagaattaaacatcgtattgatgcatatgttgacgaaaacataagtttttaccatgtcgttctattcataaagttatgaatagaattgctatgattttatgagttcggcaacgaatatttagattttcgtacaatgagaccagttttgcagtctatttatttcagaatttgtttggatactggtttttgtttaatatttgcctcactatgacttggggcaaggatcattgccgccccctcccccttttttctttctcttttcttattaaaatccagatctgggcatagacactcgtgaaacagagggatacacaaacaacat
gi|2 : tgtaT--CAC---GGGC-ACTT--GG---GG-CA-A-GGACA----C-G-----GCC-------AC-CCT-TCCCCTT--T-----TATCACTA----T-TATTCACGATTTTTT----TA--------AAAATAT---CTAAT-CT---G-GG-GTAGA--C-AC-ACTT---G-T--TT--TTCTTTAGATACAATGTACGTTAACTGAACAAA----TA---GT-TG-AA-AACAT-TC-A-T--CAA---CGATGTGT---CT-CA---ACA
gi|8 : ggtggtagttaaaaaaaaaataatcaccgatatcaattaaactaacatatagccagttttattaattttaaactatttccattcgcctcttattaatttcagttaataaattccgatctcattgttagcaagtagataatggggactgccatcT--CAC---AGAC-ACTT--AG---GA-CA-A-GAAT-----C-TT----G---------AC-CCC-CCCCCCT--T-----TTTTTC--------------------------------------AAAT-T---CTGAT-CTTCTG-GG-ATATA--C-ttacaaaaaaaaaatgttgttaacttttaaaataccctgatctaaaaatattcagtatccatgatgttgtcctgactttgaacatagacgtgaagacgttgaagcaaaaagtgatgattttaattggttgcaatgatttctttgcttttttcattgtccgattgaaagattagaaggtgacagaattatagtatgaattagaaagatcctttgtattaatacggtattaaaaataattcttaaaataacatcatttttaaattccaaatattgacgaattttgccatcaataatatcaaatagtttacacaaggtttaagattaaacatcgtatgatgcatatattgacgaaaactaagtttttcacattgtcgttctattcataagttatggaatagaattgctatgatttttatgatggcaacgaatatttaaattcttcgtacaatgagaccagttttgctgtctattttttcagaattttgtgatacgtgttttgtttaatattgcctcactgaggcacttggggcaaggatcatgaccccccccttttttttcttttcttattaaaaattcagatctgggatagacacacgtatttttctttctacgttaataatattttgttaaatatgcattaaaaatcatccaacatgttattttcctctctgtcacgtatttcattgacattataaaggggcaggatcatgcatgacccccccccctttttttttaattcagatctgagatagatgcacttattttttttcttacgttgattatgttcaagtgtctgtgatatttgcctgtaattttcagtccagctttatgcacacatacgatatttttcttcattaaattttgtcatggtgtgcatcacacatctacatgtaactattacatgatatattgtaaatacattgtgcccaaaattggaaataaattactttgtagttatgataaataacaaataaacgtaattattttaaaatacataatttaatattacatgtttgaggcgtatatatcatgtagtgttctgtggttattcggggtaaaaatacgttcccttggtgatctgcccaaactagaaatgacaacgaatgagagtcctgaggagagtatcgggacgcaaacaagaacttattgaaaggtgaatacggtttccgtttggtcgtatttttccatttcaatgtgtatggtcagtgagtccgatcgccggttgccagtacattcacactacgcgtcgccattactcttggtccctacttccgacagcgccacctaatcagggggagataacagcgacggtatcgtgagaaaagtacaccatttcagtcgttat
gi|12 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacT--CACA-GAG-C-ACTT--GG---G--CA-T-GGAT-----C-AT----GGACATGACCAC-CCC-CCCCCCT--T-----TTTTTTTA----T-T-TT----------T----TA--------AAAAT-T---CTTAT-CT---GAGG-ATAGA--C-AC-ACTT---ATT--TT--TTCTTT--------TCTACGTTATT------AA---------TT-TG-----------C-A-T--TTA---AGAT-CAT---C--CA---Atatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|24 : taaatgtttcctaatctaggtctacttcacatataggT--CAC---AGGC-ACTTTGGGCGTG--CA-T-GGAT-----C-AT----G---------AC-CCG-CCCCCTT--aaa
gi|15 : aAGAC-ACCT--GG---GG-CA-T-GGAT-----C-AT----G---------AC-CCC-CCCCCCT--T-----TTTTTTTC-------------------------------------AAT-T---CTGAT-CT---A-GG-ATAGA--C-AC-TTG------T--TT--TTATTC--------TCTACGTTATT------------TA-TGTT-TG-CA-AATAT-GC-A-T--TAA---AAGT-CAT---C--AG---AAATG-TT
gi|18 : ctttttcatggtgaaagcacAGGC-ACTT--GG---GG-CA-T-GGAT-----C-AT----G---------AC-CCC-CCCCCTT--T-----TTT-TTTT----T-T-----------------------------AAAT-T---CTGTT-CT---G-GG-ATAGA--TGAC-AC-T---A----TT--TTCTTT--------TCTACGTT-AT------TA----TG-T-TC-TG-TA-AATAT-GC-A-T--TCAT--TGAT-CAC---C--CA---
gi|17 : cAGGC-ACTT--GG---GG-CC-T-GGAT-----C-AT----G---------ACACCC-CCCTCCT--T-----TTTTTTT--------------------AAAAAATA--------AAAAT-T---CTGAT-TC---G-GG-ATAGA--C-AC-ACTT---A-T--AT--TTCTTT--------TC
gi|11 : gcaacatttttttctagcgtttattgttttgggcacAGGCGACTT--GG---GAGCATG-GGAT-----CTA-----T---------AC-CCA-CCCACTC--T-----CTTTTTT-----T-C-TTA-----TTT-T----TA--------AAAAT-TATCCTGATTCT---G-GG-ATAGA--T-AC---GT---ATTATTT--TTCTTT--------TCTACG-TACT------AACTTTTAGT-TC-TGCTATAATATGCC-A-TTCTAATTGAGAT-CAT---CTTC----ACAAG-TAATGGTCACGCTCTTGTTCATGTATCT---------TTA----TT-ACA
gi|22 : cAGGC-ACTT--GG---G--CA-T-GGAT-----C-AT----G---------ACACCC-CCCCCCCAAT-----TATTTTTG----TAT-TTC-----T------------------------------GAT-TT---G-GG-ATAGA--C-
gi|19 : cgcC-CCC-CCCCTCT--T-----TTTTTTTT----T-T-TTT-----TTTAT----T-----------------------T-TT---G-G------A--C-AC-ACTC---ATT--TT--TGATTC-----------ATGTT--T------C-----TA-T-TTGTA-TA-AATG-----A-T--TAA---AGAT-CAC---C--CA---CAATGGTTATTTTTCGTCTC-TG-TACCGT-TGT---------TCA----cagagacacatat
gi|21 : -CCC-CCCCCTT--T-----TTTTTTTT----T-T------------------------------AAT-T---C------------------GA--C-AC-ACTT---ATT--TT--TCCTTT---------CTACGTTATT------TA----TG-T-TTATT-TG-AATAT-GC-A-T--TAA---AGAT-CAT---C--CA---AAATA-T
gi|8 : GA--T-AC-ACTT---ATT--TT---TCTTT--------TCTACGTTAAT------TA----TG-T-TT-TG-TA-AATAT-GC-A-T--TAA---AAAT-CAT---C--CA---AAATG-TTATTTTTCCTCTT-TG-TCACGTATATCCCAGAAGATCAGAATTTGAAA--AAAAGGGGGGG--GGGTC-A-
gi|8 : ---------TCA----CAGACACT-TA---GGACA--AGA---A-T----------------CTTGACC----CCCCCCC----C------TT-TT--T-----TTC-----A----------------A-----------A------TTC-TGAT-CTagattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|2 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaAAGGGGGGG--GGGTC-A-TG---------------CATGATC----CTGCCCC----T------TTtatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|14 : ggtggtagttaaaaaaaaaataatcaccgatatcaattaaactaacatatagccagttttattaattttaaactatttccattcgcctcttattaatttcagttaataaattccgatctcattgttagcaagtagataatggggactgccatctgttgagacacatcgttgatgaatgttttcaactatttgttcagttaacgtacattgtatctaaagaaaaacaagtgtgtctaccccagattagatatttttaaaaaaatcgtgaataatagtgataaaaggggaagggtggccgtgtccttgccccaagtgcccgtgattacaaaaaaaaaatgttgttaacttttaaaataccctgatctaaaaatattcagtatccatgatgttgtcctgactttgaacatagacgtgaagacgttgaagcaaaaagtgatgattttaattggttgcaatgatttctttgcttttttcattgtccgattgaaagattagaaggtgacagaattatagtatgaattagaaagatcctttgtattaatacggtattaaaaataattcttaaaataacatcatttttaaattccaaatattgacgaattttgccatcaataatatcaaatagtttacacaaggtttaagattaaacatcgtatgatgcatatattgacgaaaactaagtttttcacattgtcgttctattcataagttatggaatagaattgctatgatttttatgatggcaacgaatatttaaattcttcgtacaatgagaccagttttgctgtctattttttcagaattttgtgatacgtgttttgtttaatattgcctcactgaggcacttggggcaaggatcatgaccccccccttttttttcttttcttattaaaaattcagatctgggatagacacacgtatttttctttctacgttaataatattttgttaaatatgcattaaaaatcatccaacatgttattttcctctctgtcacgtatttcattgacattatGGGGGCAT-GGATC-A-TG---------------ACCCACC----CCCTTCC----C------CCTAT--T-----TAT-----T----------------ATAAAAAAAAAAA------TTC-TGAT-CTGG-G-ATAGA-CA-CAC-TTA-TTTTAGTT--CTTTTCTACGTTAATTG--Ttttttttaattcagatctgagatagatgcacttattttttttcttacgttgattatgttcaagtgtctgtgatatttgcctgtaattttcagtccagctttatgcacacatacgatatttttcttcattaaattttgtcatggtgtgcatcacacatctacatgtaactattacatgatatattgtaaatacattgtgcccaaaattggaaataaattactttgtagttatgataaataacaaataaacgtaattattttaaaatacataatttaatattacatgtttgaggcgtatatatcatgtagtgttctgtggttattcggggtaaaaatacgttcccttggtgatctgcccaaactagaaatgacaacgaatgagagtcctgaggagagtatcgggacgcaaacaagaacttattgaaaggtgaatacggtttccgtttggtcgtatttttccatttcaatgtgtatggtcagtgagtccgatcgccggttgccagtacattcacactacgcgtcgccattactcttggtccctacttccgacagcgccacctaatcagggggagataacagcgacggtatcgtgagaaaagtacaccatttcagtcgttat
gi|17 : tgtacccacagacacttGGGGCCT--GGATC-A-TG----------------AC-ACC----CCCCTCC----T------TTTTT--T-----TTAAAAAAT----------------A-----------AAAA---TTC-TGAT-TCGG-G-ATAGA-CA-CAC-TTA-TAT---TT--CTTTTCaagtaagcattaaagatcattcagaatg
gi|11 : gcaacatttttttctagcgtttattgttttgggcacaggcacttGGGAGCATGGGATCTA-TA---------------CCC-ACC----CACTCTC----T------TTTTT--TCTTATTTT-----T----------------A-----------AAAATTATCC-TGATTCTGG-G-ATAGA-TA-CGTATTA-TTT---TT--CTTTTCTACGT--ACTA--ACTT--T-TAGT-TCT--GCTATAATATGCCATTCTA--ATT
gi|5 : caggcgacttGGGGCAA-GGATC-ATTG---------------C-CG-CC----CCCTCCC----C------CTTTT--T-----TCT-----TTCTCTTTTCTTATTAAA-----------A------TCC-AGAT-CTGG-GCATAGA----CAC-Tgagatcatcttcacaagtaatggtcacgctcttgttcatgtatctttattaca
gi|15 : taccccagattaatttcattaaaaaaaaccgtgaataatagtgataaaggggaagggtggccgtgtccttgccccagtgccgtgttacaaaaaaaaaaaattgttggtaacttttaaaatccctgatctaaaatattcagtatccattatgttgttcctgacttgtgaacatagacgttgaagcaaaagtgatgattttaattggttgcaatgaatttctttgcttttttttctgtccgattgaaagattagaaggtgacagaaattatcgtatgatttgaagatccttttgtataataccggtattaaaaaataattcttattaaatcaatcatttctaaattccaaatattgacgatattgcatcaatatatatcaatgtttcacacaagggtttaagaattaaacatcgtattgatgcatatgttgacgaaaacataagtttttaccatgtcgttctattcataaagttatgaatagaattgctatgattttatgagttcggcaacgaatatttagattttcgtacaatgagaccagttttgcagtctatttatttcagaatttgtttggatactggtttttgtttaatatttgcctcactatgacttGGGGCAT-GGATC-A-TG-------------------ACC----CCCCCCC----C------TTTTT--T-----TTT-----C----------------A-----------A------TTC-TGAT-CTAG-G-ATAGA----CAC-TTG-TTT---TT--ATTCTCTACGTTATTTA--TGTTTGC-AAATATcgtgaaacagagggatacacaaacaacat
gi|18 : ctttttcatggtgaaagcacagacacctGGGGCAT-GGATC-A-TG-------------------ACC----CCCCCCC----T------TTTTTTTT-----TTT-----A----------------A-----------A------TTC-TGTT-CTGG-G-ATAGA-TGACAC--TA--TT---TT--CTTTTCTACGTT-ATTA--TGTT--C-gcattaaaagtcatcagaaatgtt
gi|13 : caggcacttGGGGCAT-GGGTA-A-TGA--------------CACCCCC----CCCCCCCCACTT------TTTTT--T-----TTT-----T----------------A-----------A------TTC-GGAT-CTGG-T-AAAGA-CA-CAC-TTA-TTTTGCTT--CTTTCCTACGTT-ATTAGTTGTT--G-AAATATtgtaaatatgcattcattgatcaccca
gi|12 : acatgtatttaattgaatatacctggcacttGGGCAT-GGATC-A-TGGA-------------CATGACCACC-CCCCCCC----C------TTTTT--T-----TTTA----TTTTTTAAA--------A-----------A------TTC-TTAT-CTGAGG-ATAGA-CA-CAC-TTATTTT---TT--CTTTTCTACGTT-ATTA--gcacttaaagataccaaga
gi|22 : taaatgtttcctaatctaggtctacttcacatataggtcacagagcacttGGGCAT-GGATC-A-TG----------------AC-ACC----CCCCCCC----CAA----TTATT--T-----TTG-----T----------------A-----------T------TTC-TGAT-TTGG-G-ATAGA-atttgcatttaagatcatccaaaaa
gi|21 : cgcaggcacttCC----CCCCCTT----T------TTTTT--T-----TTT-----T----------------A-----------A------TTC----------------GA-CA-CAC-TTA-TTT---TT--CCTTTCTACGTTATTTA--TGTT--T-Accagagacacatat
gi|8 : cGA-TA-CAC-TTA-TTT---TT--CTTTTCTACGTTAATTA--TGTT--tttgaatatgcattaaagatcatccaaaatat
gi|8 : --TGTC--CTAAGTGTCT--GTGATATTT-GCC--TGTA--ATGTT-CA--GTCTAGCTTTATGCATAAAGTAC---ATTTTTCTTCA------TTTGTCA-TGGTGTG--TATCATTG-AACTTAATCC------TAA--CTATTGCACTAT-----ATAT--------ATACAttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|6 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattct--C-AAGTGTCTTGGTGATATTT-GCCG-TGTAGAATTTTGCAAAGTCTAGCTTAATGTACATCGTACGATATTTTTCTT--TCA---TTTGTCAATGGTGTGGTTATCATTGAAAC---ATGAACTTAGTCCTTCTATTGTATAATCACGAATAGTCTGA-AAATACATTGTGCCCAAAATCGGGAATATAAATTAC-TTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCTAAAAACATA-----TATATT-CAT-TTTGTGGCGTATTAAT-TCATGGTAGTGGTTCTGTGG-TATTCGAGTCTGTGGTAAAATTACTGTTCGCTAGTTGG--------------GATTCTGTCCCAAACTCGAAAAATGGGACAACGAATG-GAGGC-----GCGAGAAGTTATGCGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTTTGTTTGGGTTGTTTTTTTT--TTCCATTTCATTTCGTACTGTTCAGACGAGTTCGATCGCCGGTTGGGCCAACATAGCTGAGTTGAGAATTCACACTGAGGCATCGCCATTACTGCTTGGT-CCCTACTTCAAGACAGGCGCCACGCCTGAAT------CA-GGGGGAAGGTAACAGGCGCCGGGTATCGTAGAGAAAAGTATTCCATT
gi|9 : TG-TTCGGTGG-TATTCTG-----TGGTAAAA-----------------ATACGTTCCCATTGTGAT-CTG-CCCAAACT-AAGAAATGA-ACAACGAATGAGAGGC-----GCGAGAG--TATCGGGACGCAAACAAGAACTTA-TTGAAAGGTGAATAC-GTTTCCGTTTGGTTCG-T-TTTTTAATCCCATTTCAATTTGTACTGGCCAGACGAGTTCGATCGCTGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-GCGCGTCGCCATTACT-CTTGGT-CCCTACTTC-Cagagtatacatta
gi|4 : TTACT-TTTGGTTCCCTAC-TC-CACTA-GCCCCGC-CAT-ACTTCCGCGCA-AGGG--AAATAACCGC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AATTCATTGTTTCCCCTCCCAAAAATTTAGCATTTTTTCCAAATCATATCTTTATTTTTCCAATTTCAAAACAAAACAGAGATCACCGTATATAAATTAATTTTGCTGACAAAGAGAAAATACTTTTTTTTTTCATTTCAATTTCATTCTCCAAACCCCTGTACATGCTAAAGATTATGTGATATCAGATGAATGTGTAAAACAATAGAGGTATCCATTTAAGCAGATTTTTAGC
Unaligned ( gi|16 ): CAATGATTTTTTTCGGGCCAATATGCCACCGATAATGGGTGGTTTCCCCTCCCAAAAACTTAGTATTTTTTCCCAATCTGAATCATACATCTATTTTTTTCCCCAATTTCAAAAAAGTTCAGAAAAAGCA
Unaligned ( gi|23 ): AGCACCGTGTGTCATCATCTATACAGCTAGTAAAAACAATTCGTTCC
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 77777777 2222 77777777777777777777777777777777 2222222 1 1 1 11111 555555555555555 1 11 1 1 1111 1 111 4444 1 333333333 111 2222222222 111 00000000000000000000000000000000000000 111 2222222222 11 22222222 111111 2222 11 1 11 11 1 1 22222 1 111 11 11 111111 1 1 1 1 1 444444444444 2 555555555555 1 1 1 111 1 1 222 1 1111111111111111111111111111 1 1111 1 11111 1 11 1 1 1 22 1 1 11 1 11 11 1 11 1 1 1 1 1 1 11 1 222222222 222222 111 11 11 11 1 111 1111 111 222 11 11111111111111 666666666666666666666666666 222222222 1 666666666666666666 66666666666 11 22 3333333 333 1 11 1 2 11 1 11 111 333 1 11 11 1 22222222222 22222 222222 1 2222222 5555555 2 333 11 2 11 2 1 1 2222222222 1 4444444444 1 1 22 11 3333333333333 11 1 1 111 1111 11 11 4444444444444 1 1 11 111 222222 1 11 2 2
lowQualScore : 22222222 0000 0 8 8 8 55555555555555555555555555555555 6 6666666 8 0 8 0 0 0 7 99999 1 555555555555555 3 1 7 0 44 3 3 4444 0 3 777 0000 0 6 0 8 222222222 444 1111111111 222 66666666666666666666666666666666666666 6 88 111 2222222222 77 1 6 4 55555555 6 999999 3333 11 0 33 33 0 0 3 44444 0 777 99 33 444444 2 0 0 0 0 0 333333333333 0 111111111111 3 0 2 3 3 3 0 5 2 111 0 0 000 0 1111111111111111111111111111 0 4444 0 88888 0 33 3 0 2 0 3 0 3 3 2 55 3 0 3 0 33 0 33 33 0 33 0 0 0 0 0 0 33 0 3 555555555 888888 111 33 22 2 33 0 3 555 4444 777 555 8 11 11 3 3 3 888 3 44 1 3 3 3 55555555555555 5 2 2 333333333333333333333333333 33 5 555 2 2 5 2 2 9999 44 2 88 4 1 111111111 3 3 6 3 3 3 3 44 999 666 55 777 4 3 6 6 0 7 5 4 8 333333333333333333 00000000000 3 0 33 00 2 7777777 000 1 0 33 3 5 7 33 0 33 1 2 2 555 555 0 33 88 0 3 11 55555555555 1 55555 222222 0 0 0 7 7 5555555 0 0000000 3 7 777 33 1 7 7 7 3 1 99 7 3 0 0 9999999999 3 0 2 5555555555 0 0 00 22 3 1111111111111 33 0 2 0 111 4444 33 6 55 2 3 33 8888888888888 0 2 8 8 0 8 0 33 777 888888 0 33 8 1 3 3 1
lowQualScore : ........ .... . . . . ................................ . ....... . . . . . . . ..... . ............... . . . . .. . . .... . . ... .... . . . . ......... ... .......... ... ...................................... . .. ... .......... .. . . . ........ . ...... .... .. . .. .. . . . ..... . ... .. .. ...... . . . . . . ............ . ............ . . . . . . . . . ... . . ... . ............................ . .... . ..... . .. . . . . . . . . . .. . . . . .. . .. .. . .. . . . . . . .. . . ......... ...... ... .. .. . .. . . ... .... ... ... . .. .. . . . ... . .. . . . . .............. . . . ........................... .. . ... . . . . . .... .. . .. . . ......... . . . . . . . .. ... ... .. ... . . . . . . . . . .................. ........... . . .. .. . ....... ... . . .. . . . .. . .. . . . ... ... . .. .. . . .. ........... . ..... ...... . . . . . ....... . ....... . . ... .. . . . . . . .. . . . . .......... . . . .......... . . .. .. . ............. .. . . . ... .... .. . .. . . .. ............. . . . . . . . .. ... ...... . .. . . . . .
lowQualScore : 77777777 7777 7 0 0 0 00000000000000000000000000000000 0 0000000 0 8 0 0 0 0 3 00000 0 000000000000000 3 0 3 7 00 3 3 8888 0 2 555 8888 0 0 8 0 000000000 333 3333333333 333 77777777777777777777777777777777777777 7 88 777 0000000000 22 0 7 2 00000000 7 222222 0000 00 0 88 88 0 0 2 55555 0 555 22 88 888888 5 0 0 0 0 0 888888888888 0 222222222222 2 0 5 2 2 2 0 5 5 000 0 5 222 0 2222222222222222222222222222 0 8888 0 55555 0 88 2 0 5 0 2 0 2 2 5 55 2 0 2 0 88 0 88 88 0 88 0 0 0 0 0 0 88 0 2 555555555 888888 888 88 00 5 88 0 2 888 2222 555 000 0 66 55 1 1 1 555 1 22 0 1 1 1 88888888888888 7 7 9 555555555555555555555555555 99 4 000 9 9 7 7 7 6666 22 3 55 2 0 555555555 3 3 7 3 3 3 3 66 222 444 00 000 4 2 7 7 8 5 2 3 0 000000000000000000 88888888888 5 8 88 55 0 0000000 333 0 0 88 2 5 5 88 0 88 0 5 5 000 000 0 88 00 0 2 22 22222222222 0 00000 000000 0 7 7 3 3 3333333 7 0000000 3 3 777 00 0 3 3 3 3 0 77 3 3 0 0 8888888888 2 0 5 2222222222 0 0 55 55 2 2222222222222 88 0 5 0 000 8888 88 5 00 5 2 88 5555555555555 0 5 0 0 8 0 0 88 888 888888 0 88 8 0 3 7 0
consensus : GGTGGTAGTTA--------AAAAAAAAA-AATCACCGAT-AT-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTAC--ATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTA-C-CCCAGATTAGA-----TATTT--TTAAAAA---A------A--------T-------AATAGT-GA-AAAAGG-GG-AGGG---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTA-CAAA------AAAAAAA---TGTT--GGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G---------CAAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTT-AAGAA-TTAAACATCGT--AT-GATGCA--TA--TATTGACGAAAAC-TAAGT--TTTTCACA-TG-TCGTTCT-ATTC-ATAA-GTTAT-GAATAGAAT--TGCT-ATGATTTTTATGA-TTC-----GGC------AACGAATATTTAGA-TTTTC--GTACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA-TT-TTGT---GATACGTG---TTTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTTTT-TTT----CT-TTT-TTTATTA--------AAA--ATTCTGA---T-CTG-GG-ATA-GAC-ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGTTCATTGACATTATAAGGGGGCATGGATCATG--------------CATGACCCCCCCCCC----------TTNTTTTTTTA--ATTC-AGATCTGAGATAGA-T-----GCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATCAAATTTTGTCA-TGGTGTG--CATCACTGAA-CATCNACATGTAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTT-ACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCGTAT--ATATCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
Reference ( family-1587 ) : GGTGGTAGTTATTAAAAAAAAAAAAAAATAATCACCGAT-AT-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-TTTAT-TGTTAATTAGTCAAGNAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCNATCTGTTGGGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA---ATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTA-T-CCCAGATCAGA-----TATTT--TTAAAAA---A------A--------T-------AA-AG--GA-AAAAGG-GG-GGGG---GTG-GC-------CGTGATCCNTGCCCCAAGT-GCCTGTG------A-TTA-CAAA------AAAAAAN---TGTT--GGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G---------CAAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAGTAC--CGGTATTAAAAA-TAATTCTTACT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTT-AAGAA-TTAAACATCGT--AT-GATGCA--TA--TATTGACGAAAAC-TAAGT--TTTTCACA-TG-TCGTTCT-ATTC-ATAA-GTTAT-GAATAGAAT--TGCT-ATGATTTTTATGA-TTC-----GGC------AACGAATATTTAAA-TCTTC--GTACAATGAGACCG-GTTTTGCAGTCT--ATT-TATTTC--GGAA-TT-TTGT---GACACGTG---TTTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ANGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTTTT-TTT----CT-TTTCTTTATTA--------AAA--ATTCTGA---T-CTG-GG-ATA-GAC-ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATNTTCATTGACACTATAAGGGGGCATGGATCATG--------------CACGACCCCCCCCCC----------TTTTTTTTTTA--ATTC-TGATCTGGGATAGA-C-----ACACTTATTTTT--CTTTTCTACGTTAATTATGTTC-AAGTGTCT--GTGATATTTTGCCGTGTA--ATTTT-CA--GTCTAGCTTTATGCACANAGTACGATATTTTTCTTCATCA---TTTGTCA-TGGTGTG--TATCATTGAA-CATCNAC-TGTAA-----CTATTGCATNAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGGAATATAAATTACTTTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCNAAANACATAATTTATATATTACATGTTTGNGGCGTATNNATATCATGGTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-GAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATTCGTACTGGTCAGACGAGTTCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGNCGGGTATCGTAGAGAAAAGTACNCCATT
gi|1 : GATGGTAGTTA-----------AAAAAA-AATCACTGAT-AT-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGACGTACAAGTATGGGGACTTGCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTAC--ATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTA-C-CCCAGATTAGA-----TATTT--TTAAAAA---ACCGTGGA--------T-------AATAGT-GATAAAAGG-GG-AAGG---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTA-CAAA------AAAAAAT---TGTT--TGTAA-CCT--TTTAAAAAG-CCC-TGATCTAAAAA----TATT-CAGTAT---CCAT--ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G---------CAAAATGTG------------ATGATTTTAATTGCTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TA-TAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACACAAGG-TT-AAGAA-TTAAACATCGT--AT-GATGCA--TA--TATTGACGAAAAC-TAAGT--TTTTCACA-TG-TCGTTCT-ATTC-ATAA-GTTAT-GAATAGAAT--TGCT-ATGATTTTTATGA-TTC-----GGC------AACGAATATTTAAA-TGTTC--GTACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA-TTATTGT---GATACGTG---TTTTGT-TTAATATTTGCCTCACTGAG-GC-ACTT--GG---G-C--AAGG-AT-C-A-----G---------AC-CCCCCC-CCTTTTTTT-TTT----CT-TTTCTTTATTA--------AAA--ATTCAGA---T-CTG-GG-ATA-GAC-ACAT----GT--ATTTT--TTCTTTTCTACGTTAATAA----TA-T-TT-TG-TA-AATATT-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTATTTTTCCTCTC-TG-TCACGTATGTTCATTGACATTATAAGGGGGCA-GGATCATG--------------CATGACCCCCTCCCT----------TTTTTTTTTTA--ATTC-AGATCTGAGATTGA-T-----GCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC--AA-CATCTACATGTAA-----CTATTACATGAT-----ATA--TTA-AAA-TACATTGTGCCCAAAATTGGAAATA-AAA-----TTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTTAAAAAACATAATTTATATATTACAT-TTTGAGGCGTATATATATCAT-ATAGT-GTTCTGTGG-TATTC----CGGGTGGTAAAAA--------------------GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAGTCACTGAGC----GAGAG--TATCGGGACGCAAACAAGAAATTAATTGAAAGGTGAATACGGTTTCCGTTT-GGTT-CG--TGTTTTT--TCCCATTTCAATGTGTACTGGTCTGATGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCG-CATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACCCTGAAT------CA-GGGG--AGATAACAGCTGAC-GGTATCGT-GAGAAAAGTACCCCATT
gi|11 : C--AG-GCGACTT-GGGA--G-C--ATGGGAT-CTAT--------------AC-CCACCCACTCTCTTTT-TTT----CT-TATTTTTA--A--------AAATTATCCTGA---TTCTG-GG-ATA-GAT-ACGTA---TT--ATTTT--T-CTTTTCTACG-TACTAACTTTTAGT-TC-TGCTATAATATGCC-A-TTCTAATTGAGATCAT---CTTCACA---A--GTAATGGTCACGCTCTTGTTCATGTATCTTTATT-ACA
gi|12 : TCAC--AGAGC-ACTT-GGG-----C--ATGG-AT-C-AT----GGACATGACCAC-CCCCCC-CCCTTTTTT-TTT----AT-TTT-----TTA--------AAA--ATTCTTA---T-CTGAGG-ATA-GAC-ACAC----TT--ATTTT--TTCTTTTCTACGTTATTAA----T--T--------------TG-C-A-T--TTA---AGATCAT---C--CAAA---A
gi|13 : taaatgtttcctaatctaggtctacttcacatataggACATGTA---TTTAAT-TGAATAT--ACCT------G-GC-ACTT-GGG---G-C--ATGG-GT-A-AT----G---------ACACCCCCC-CCCCCCCAC-TTT----TT-TTTTTTT--------------A--ATTCGGA---T-CTG-GT-AAA-GAC-ACAC----TT--ATTTTGCTTCTTTCCTACGTTATTAG----T--T-GT-TG--A-AATATG-C-ACT--TAA---AGATa
gi|14 : CCCAC--AG-AC-ACTT-GGG---GGC--ATGG-AT-C-AT----G---------AC-CCACCC-CC--------TTC----CC-CCTATTTATTATAAAAAAAAAA--ATTCTGA---T-CTG-GG-ATA-GAC-ACAC----TT--ATTTTAGTTCTTTTCTACGTTAA-------------T-TG-TA-AGTAAG-C-A-T--TAA---AGATCAT---T--CAGA---AT-Gaccaaga
gi|15 : tgtaCAC--AG-AC-ACCT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTTTT-TTT----C-----------------------A--ATTCTGA---T-CTA-GG-ATA-GAC-AC------TT--GTTTT--T-ATTCTCTACGTTATT------TA-TGTT-TG-CA-AATATG-C-A-T--TAA---AAGTCAT---C--AGAA---AT-GTT
gi|17 : ctttttcatggtgaaagAAAGAAATATAAGTGT-GT---------CTA-T-CCCGAATCAGAATTTTTATTT--TTTAAAA---A------A---------------------------AAAGG-AG-GGGG---GTG--T-------CATGATCCAGGCCCCAAGT-GCCTGTGCCCAAAA-CAA-TAAACGCTAGAAAAAAA---TGTT--G
gi|17 : gCAC--AG-GC-ACTT-GGG---G-C--CTGG-AT-C-AT----G---------ACACCCCCC-TCCTTTTTT-TTTAAAA----------AATA--------AAA--ATTCTGA---T-TCG-GG-ATA-GAC-ACAC----TT--A-TAT--TTCTTTTCtc
gi|18 : gcaacatttttttctagcgtttattgttttgggC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCTTTTTTT-TTT----TT---------------------AA--ATTCTGT---T-CTG-GG-ATA-GATGACAC-----T--A--TT--TTCTTTTCTACGTTATT-A----TG-T-TC-TG-TA-AATATG-C-A-T--TCAT--TGATCAC---C--CA
gi|19 : C-CCCCCC-CTCTTTTTT-TTT----TT-TTTTTTTATT------------------------T-TTG-G-------AC-ACAC----TC--ATTTT--TGATTC---ATGTTTCTA----------TT-TG-TA-TAAATG---A-T--TAA---AGATCAC---C--CACA---ATGGTTATTTTTCGTCTC-TG-TACCGT-TGTTCA
gi|2 : GGTGGTAGTTA--------AAAAAAAAATAATCACCGAT-AT-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAG-----CAAGTAGATAATG----------------------GGGACT-GCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTAC--ATTGTATC-TAAAGAAAAACAAGTGT-GT---------CTA-C-CCCAGATTAGA-----TATTT--TTAAAAA---A------A--------TCGTGAATAATAGT-GATAAAAGG-GG-AAGG---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTA-CAAA------AAAAAAA---TGTT--GTTAA-CTT--TT--AAAATACCC-TGATCTAAAAA----TATT-CAGTAT---CCATG-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--GACGTTGAAGCAAAAAGTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTT--CATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAA-TTATAGTATGAATTAGAAAGATCCTT-T-GTATTAATA---CGGTATTAAAAA-TAATTCTTA----------------------------AAAT-AACA--TCATTT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATA-ATATC-AAATAGTTT-ACAC--AAGGTTT-AAG-A-TTAAACATCGT--AT-GATGCA--TA--TATTGACGAAAAC-TAAGT--TTTTCACATTG-TCGTTCT-ATTC-ATAA-GTTATGGAATAGAAT--TGCT-ATGATTTTTATGA-T-------GGC------AACGAATATTTAAATTCTTC--GTACAATGAGACCA-GTTTTGCTGTCT--ATT-T-TTTC--AGAA-TT-TTGT---GATACGTG---TTTTGT-TTAATA-TTGCCTCACTGAG-GC-ACTT-GGG---G-C--AAGG-AT-C-AT----G---------AC-CCCCCC-C---TTTTT-TTT----CT-TTTC-TTATTA--------AAA--ATTCAGA---T-CTG-GG-ATA-GAC-ACAC----GT--ATTTT--T--CTTTCTACGTTAATAA----TA-T-TT-TGTTA-AATATG-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTA-TTTTCCTCTC-TG-TCACGTAT-TTCATTGACATTATAAAGGGGCA-GGATCATG--------------CATGACCCCCCCCCC-----------TTTTTTTTTA--ATTC-AGATCTGAGATAGA-T-----GCACTTATTTTT---TTTCTTACGTTGATTATGTTC-AAGTGTCT--GTGATA-TTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACA-TACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC---A-CATCTACATGTAA-----CTATTACATGAT-----ATA--TTGTAAA-TACATTGTGCCCAAAATTGGAA--ATAAATTACT----TTGTAGTTATGATAAA--TA---ACAAAT-AAACG-TAA---TTATTTT-AAAATACATAATTTA-ATATTACATGTTTGAGGCGTAT--ATATCAT-GTAGT-GTTCTGTGGTTATT-----C-GG-GGTAAAAATAC-GTTCCC--TTGGT---GA-TCTG-CCCAAACT--AGAAAT--GACAACGAATGAGAG-----TC-CTGAGGAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-ATTTT--T-CCATTTCAATGTGTA-TGGTCAG-TGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACC-T-AAT------CAGGGGG--AGATAACAG-CGAC-GGTATCGT-GAGAAAAGTACACCATT
gi|20 : AT-AT-CAGTT-AAACTAA---------CAAATCCATGCATTT-------ATAGCCAGTTTTATTA-TTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATGT-AGATATTTAT-TGtcagtcgttat
gi|21 : ttCCCCC-CCCTTTTTT-TTT----TT-TT-------------------A--ATTC-------------------GAC-ACAC----TT--A-TTT--TTCCTTTCTACGTTATTTA----TG-T-TTATT-TG-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-ATg
gi|22 : GGGCATGGATCATG---------------AC-ACCCCCCCCCCAA--------TTATTTTTGTA--TTTC-TGATTTGGGATAGA-CCAGAGACACATAT
gi|24 : cgcaggcacttTCAC--AG-GC-ACTTTGGGCGTG-C--ATGG-AT-C-AT----G---------AC-CCGCCC-CCTT
gi|3 : aGTTTTCAAGTTAA-TGT-GTTCAGTGTTTAACGTAGGTATTGTATCGTAAAGAAAA-TAAG-GT-GTAGTGGGTTCCTA-C-CCCTGATTAGA------ATT------AGCG---G------A--------T-------AA-AG--AG-AGGTGG-AG-TGGGCCTGTGTGT-------CATGA-CCTTGCCC-AAGTTGCCTGTG------AGTTAACAAA------GAGAAACG--TGGTCCGGTAAACTTGTTT--AGAAT-CCCGTGA-ATAAAAAAACGTATTTCAGTATTGACCATTTATGGGTTGGT-CGCTTGA-TT-TGAATCACTATGACGT-GGAAGG---------CAGAA-TTGGGTTGCTAAGAAATGATTTCAGTTTGCTTC------TTTTTTT--TTTTTTTTGATTGTCAGATTGAA-GATTAGAAGGTGAACAGAG-TTATAGTATGAATAAGAAAGATCCTTGT-GTA-TAGTATGACGGTATTAAAAA-TAATTCTTACTGGAAATGGTGTATCACTGTACCGTGCAAATTCA-AGGTCA-TTGCTT-TTCATTCCAAATGATTGACTGGAATTTCTGCCATCATATATATATTGAAATAGTTTCACAC--AAGGTTTAAAGAATTTTAACATGGTAAAT-TATGCATTTAACTATTGACGAAAAC-TAAGTTGTTTTCACA-TGTTTGTTCTAATTCAATAA-GTTAT-AAATAGGATAATGCTAATGATTTTTATGA-TTCTGCAAGGCGACATTAACGAACATTTAGA-ATTTCGAGTACACTGAGACCGTGTTTTG-AGTTTTAATTATATTTCCAGGAATTT-TTGT---GACACGTGTGTTTTTGTGTTATTATTTGCC-CAC--AG-GC-AGTT-GGG---G-CCAACGG-ATGC-TT----GC--------GC-CCCCCC-CCCCTTTTC-TTT----C----CCTTTATTA--------AAA--AATCAGA---T-GTG-GGAATAGGAC--CACAATGTTAAATTTT--TTC-TTTCTACGTTAATAA----TATT-TT-TG-T--AATATG-CTA-T--TAA---AAATCATGGGC--TACAGGCAT-GTTAGTTTNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTACCCCTCCCCCCCCTACCCTGTTGTTTTTCTAAGATTCAAGATCTGAGATAGATT-----ACACTTATTTTTGCTTTTTCTACGTTAAATATG
gi|4 : TTACT-TTTGGTTCCCTAC-TC-CACTA-GCCC--CGCCAT-ACTTCCGCGCA-AGGG--AAATAACCGCc
gi|4 : aatggccaacttctattGGTGGTAGTTATTAAAAAAAAAAAA----AATCACTGATAAT-AAATT-AAA-TAC---------TA------------T--------TCGCCAGTTTTATTAATTTT-------AAACT-A----------CCCCAGATT-AATTTCA-TTAAAAAAacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcggtggtagttattaaaaaaaaaaaaaatcactgataataaattaaatactattcgccagttttattaattttaaactaccccagattaatttcattaaaaaa
gi|5 : aatggccaacttctattgcggttatttcccttgcgcggaagtatggcggggctagtggagtagggaaccaaaagtaaacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcTA-C-CCCAGATTA--------ATTTCATTAAAAA---A------AACCGTGAAT-------AATAGT-GA-TAAAGG-GG-AAGG---GTG-GC-------CGTG-TCCTTGCCCCA-GT-GCC-GTG--------TTA-CAAA------AAAAAAAAATTGTT--GGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAA-----TATT-CAGTAT---CCATT-ATG--TTG-TTC--CTGACTTGTGAA-CA-TA-GACGTTGAA--G---------CAAAA-GTG------------ATGATTTTAATTGGTTGCAATGAATTTCTTTGCTTTTTTTTC--TGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATCGTATGATTTG--AAGATCCTT-TTGTA-TAATAC--CGGTATTAAAAAATAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---TCTAAATTCCAAAT-ATTGAC--GA-TAT-TGC-ATCA-ATATATATC-AA-T-GTTTCACACA-AGGGTTT-AAGAA-TTAAACATCGT--ATTGATGCA--TA--TGTTGACGAAAACATAAGT--TTTTACCA-TG-TCGTTCT-ATTC-ATAAAGTTAT-GAATAGAAT--TGCT-ATGA-TTTTATGAGTTC-----GGC------AACGAATATTTAGA-TTTTC--GTACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA--T-TTGTTTGGATAC-TGGT-TTTTGT-TTAATATTTGCCTCACT-AT-G--ACTT-GGG---G-C--AAGG-AT-C-ATTGCCG---------CC-CCCTCC-CCCTTTTTTCTTT----CTCTTTTCTTATT---------AAA--ATCCAGA---T-CTG-GGCATA-GAC-AC
gi|6 : C-AAGTGTCTTGGTGATATTT-GCCGTGTAGAATTTTGCAAAGTCTAGCTTAATGTACATCGTACGATATTTTTCTT--TCA---TTTGTCAATGGTGTGGTTATCATTGAAACATGAAC-T-TAGTCCTTCTATTGTATAATCACGAATAGTCTG-AAAATACATTGTGCCCAAAATCGGGAATATAAATTACTT-ACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCTAAAAACA-----TATATATT-CAT-TTTGTGGCGTATTAAT-TCATGGTAGTGGTTCTGTGG-TATTCGAGTC-TGTGGTAAAATTACTGTTCGC--TA-GTTGGGATTCTGTCCCAAACTCGAAAAATGGGACAACGAATG-GAG-----GCGC----GAGAAGTTATGCGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTTTGTTTGGG-T-TGTTT-TTTTT--TTCCATTTCATTTCGTACTGTTCAGACGAGTTCGATCGCCGGTTGGGCCAACATAGCTGAGTTGAGAATTCACACTGAGGCATCGCCATTACTGCTTGGT-CCCTACTTCAAGACAGGCGCCACGCCTG-AAT------CA-GGGGGAAGGTAACAGGCGCCGGGTATCGTAGAGAAAAGTATTCCATTtcgtgaaacagagggatacacaaacaacat
gi|7 : AT-ATGCAATTTAAACTAAGCAAATCCCCA------------TGCAGTCCATGGCCGTTTTCATTATTTTTTGAAGAAAAACTAATTTCCATTCGCCTCTTATTAAATTTAAGTTAATAAATTCGCAAT-TGTACATG-TAATTAGTCAAGAAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCAA-CTGTTTGAACGACATCGCTTGATTGCATGTTTTCAACT--AGTTTGGTTC-GT---TAAGGT----ATTGTATT-TAGAGAAAATAAAGTGTGGG---------CTAGTGTCTAGAT---A-----TA-------AAAAAGACA------A--------T-------AATAGTTGA-TAAAGGTGGTGGAG---ATG-GCGTTGTGTCATGACCATTTCGCCAAGT-GCTT-TG------A-TTA-CAAA------AAagagtatacatta
gi|8 : attgtttgaaactctattccacatgggtcattgatgaaattgatgcat-GAT-ACAC----TT--ATTTT---TCTTTTCTACGTTAATTA----TG-T-TT-TG-TA-AATATG-C-A-T--TAA---AAATCAT---C--CAAA---AT-GTTATTTTTCCTCTT-TG-TCACGTATATCC
gi|8 : TCAC--AG-AC-ACTT-AGG---A-C--AAGA-AT-C-TT----G---------AC-CCCCCC-CCCTTTTTT-TC----------------------------AA--ATTCTGATCTT-CTG-GG-ATA-TAC-cagaagatcagaatttgaaaaaaaggggggggggtcaagattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|8 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacTGTCCTAAGTGTCT--GTGATATTT-GCC-TGTA--ATGTT-CA--GTCTAGCTTTATGCATAAAGTAC---ATTTTTCT---TCA---TTTGTCA-TGGTGTG--TATCATTGAA-C-TTAAT-CCTAA-----CTATTGCACTAT-----ATA--T-----A-TACAtatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|9 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattctT-GTTCGGTGG-TATTC----T-G-TGGTAAAAATAC-GTTCCCATT--GT---GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACG-TTTCCGTTT-GG-TTCG--T-TTTTTAATCCCATTTCAATTTGTACTGGCCAGACGAGTTCGATCGCTGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-GCGCGTCGCCATTACT-CTTGGT-CCCTACTTC-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTCATTGTTTCCCCTCCCAAAAATTTAGCATTTTTTCCAAATCATATCTTTATTTTTCCAATTTCAAAACAAAACAGAGATCACCGTATATAAATTAATTTTGCTGACAAAGAGAAAATACTTTTTTTTTTCATTTCAATTTCATTCTCCAAACCCCTGTACATGCTAAAGATTATGTGATATCAGATGAATGTGTAAAACAATAGAGGTATCCATTTAAGCAGATTTTTAGC
Unaligned ( gi|16 ): CAATGATTTTTTTCGGGCCAATATGCCACCGATAATGGGTGGTTTCCCCTCCCAAAAACTTAGTATTTTTTCCCAATCTGAATCATACATCTATTTTTTTCCCCAATTTCAAAAAAGTTCAGAAAAAGCA
Unaligned ( gi|23 ): AGCACCGTGTGTCATCATCTATACAGCTAGTAAAAACAATTCGTTCC
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 33333 22 77777777777777777777777777777777 2222222 1 1 1 1 444444444444444 1 11 1 1 1111 1 111 1111 1 333333333 111111 111 77777777777777777777777777777777777 1 111 2222222222 11 22222222 111111 111 1111 1 11 11 1 1 22222 1 111 11 11 111111 1 1 1 1 1 44444444444444 1 555555555555 1 1 111 1 222 1 0000000000000000000000000000 1 1111 1 11111 1 11 1 1 1 11 1 1 1111 11111 1 11 1 1 1 1 1 1 11 1 222222222 222222 1 11 1 11 1 11 1 1 111 111111 11 111111111 55555555555555555555555555 222222222 2 77777777777777 5555555555 1 11 1 1 333 1 11 1 1 11 1 11 111111 1 11 222222222 111111 11 22222 222222 1 2222222 1 222 1 1 11 11 1 1 1 2222222222 1 4444444444 1 1 11 11 3333333333333 11 1 1 111 1111 11 11 4444444444444 1 1 11 111 222222 1 11 1 1
lowQualScore : 33333 00 0 8 8 8 55555555555555555555555555555555 6 6666666 8 0 8 0 0 0 7 7 3 222222222222222 3 7 44 3 3 4444 0 3 777 7777 0 6 0 8 222222222 1 999999 222 11111111111111111111111111111111111 3 99 6 111 2222222222 77 6 6 55555555 999999 444 7777 0 33 33 0 0 3 44444 0 777 99 33 444444 2 0 0 0 0 0 33333333333333 0 111111111111 3 0 2 3 3 3 0 3 3 2 111 0 7 000 0 7777777777777777777777777777 0 4444 0 88888 0 33 3 0 2 0 3 0 3 3 2 33 7 3 0 3 0 4444 88888 0 33 0 0 0 0 0 0 33 0 3 555555555 888888 0 33 0 2 33 0 3 33 3 0 0 777 666666 8 11 00 2 2 2 99999 33 2 2 2 6666 888888888 5 2 444 22222222222222222222222222 444 2 444 2 2 5 2 88888 8888 33 1 88 4 1 111111111 3 3 6 3 3 3 3 44 999 666 55 777 4 3 6 6 0 7 5 7 88888888888888 8888888888 4 88 3 3 000 0 33 3 5 0 33 0 33 0 2 2 2 999999 0 33 333333333 111111 33 0 55555 222222 0 0 7 7 7 7 3333333 3 7 333 2 7 7 7 3 88 7 88 3 0 0 9999999999 3 0 2 5555555555 0 0 77 22 3 1111111111111 33 0 2 0 111 4444 33 6 1 2 3 33 8888888888888 0 2 8 8 0 8 0 33 777 888888 0 33 8 3 3 1
lowQualScore : ..... .. . . . . ................................ . ....... . . . . . . . . . ............... . . .. . . .... . . ... .... . . . . ......... . ...... ... ................................... . .. . ... .......... .. . . ........ ...... ... .... . .. .. . . . ..... . ... .. .. ...... . . . . . . .............. . ............ . . . . . . . . . . ... . . ... . ............................ . .... . ..... . .. . . . . . . . . . .. . . . . . .... ..... . .. . . . . . . .. . . ......... ...... . .. . . .. . . .. . . . ... ...... . .. .. . . . ..... .. . . . .... ......... . . ... .......................... ... . ... . . . . ..... .... .. . .. . . ......... . . . . . . . .. ... ... .. ... . . . . . . . . .............. .......... . .. . . ... . .. . . . .. . .. . . . . ...... . .. ......... ...... .. . ..... ...... . . . . . . ....... . . ... . . . . . .. . .. . . . .......... . . . .......... . . .. .. . ............. .. . . . ... .... .. . . . . .. ............. . . . . . . . .. ... ...... . .. . . . .
lowQualScore : 33333 77 7 0 0 0 00000000000000000000000000000000 0 0000000 0 8 0 0 0 0 3 3 3 777777777777777 3 3 00 3 3 8888 0 2 555 2222 0 0 8 0 000000000 8 888888 333 88888888888888888888888888888888888 3 22 7 777 0000000000 22 7 3 00000000 222222 000 0000 0 88 88 0 0 2 55555 0 555 22 88 888888 5 0 0 0 0 0 88888888888888 0 222222222222 2 0 5 2 2 2 0 2 2 5 000 0 0 222 0 8888888888888888888888888888 0 8888 0 55555 0 88 2 0 5 0 2 0 2 2 5 22 0 2 0 2 0 8888 55555 0 88 0 0 0 0 0 0 88 0 2 555555555 888888 0 88 0 5 88 0 2 88 2 0 0 555 000000 0 66 77 9 9 9 00000 99 9 9 9 1111 222222222 3 5 777 44444444444444444444444444 777 8 777 7 7 3 5 88888 9999 99 5 55 2 0 555555555 3 3 7 3 3 3 3 66 222 444 00 000 4 2 7 7 8 0 2 0 33333333333333 3333333333 0 33 3 3 333 0 88 2 5 0 88 0 88 2 5 5 5 888888 0 88 555555555 000000 88 2 00000 000000 0 7 3 3 3 3 7777777 3 3 333 0 3 3 3 3 33 3 33 3 0 0 8888888888 2 0 5 2222222222 0 0 00 55 2 2222222222222 88 0 5 0 000 8888 88 5 0 5 2 88 5555555555555 0 5 0 0 8 0 0 88 888 888888 0 88 8 3 3 0
consensus : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGA-NAAAGG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGTTCATTGACATTATAAGGGGGCA-GGATCATG--------------CATGACCCCCCCCCC----------TT-TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAA-C---ATCTACAT-GTAA--CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
Reference ( family-1587 ) : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGA-AAAAGG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGTTCATTGACATTATAAGGGGGCATGGATCATG--------------CATGACCCCCCCCCC----------TTNTTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATCAAATTTTGTCA-TGGTGTG--CATCACTGAA-C---ATCNACAT-GTAA--CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
gi|1 : GATGGTAGTTA-----AAAAAAAA----TCACTGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGACGTACAAGTATGGGGACTTGCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------ACCGTGGA--------TAATAG-TGATAAAAGG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAT---TGT----TTGTAA-CCT--TTTAAAAAG-CCC-TGATCTAAAAA----TATT-CAGTAT---CCAT--ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAATGTG------------ATGATTTTAATTGCTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TA-TAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACACAAGG-TTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAAATG-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATTATT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCACTGAG-GC-ACTT--GG---G-C--AAGG-AT-C-A-----G---------AC-CCCCCC-CCTTTTT---TTTTT----CTTTTCTTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAT----GT--ATTTT--TTCTTTTCTACGTTAATAA----TA-T-TT-TG-TA-AATATT-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTATTTTTCCTCTC-TG-TCACGTATGTTCATTGACATTATAAGGGGGCA-GGATCATG--------------CATGACCCCCTCCCT----------TTTTTTTTTTA--ATTC-AGATCTGAGATTGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC--AA-C---ATCTACAT-GTAA--CTATTACATGAT-----ATA--TTA-AAA-TACATTGTGCCCAAAATTGGAAATA-AAA----TTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTTAAAAAACATAATTTATATATTACAT-TTTGAGGCGTATATATA--TCAT-ATAGT-GTTCTGTGG-TATTC----CGGGTGGTAAAAA--------------------GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAGTCACTGAGC----GAGAG--TATCGGGACGCAAACAAGAAATTAATTGAAAGGTGAATACGGTTTCCGTTT-GGTT-CG--TGTTTTT--TCCCATTTCAATGTGTACTGGTCTGATGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCG-CATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACCCTGAAT------CA-GGGG--AGATAACAGCTGAC-GGTATCGT-GAGAAAAGTACCCCATT
gi|11 : C--AG-GCGACTT-GGGA--G-C--ATGGGAT-CTAT--------------AC-CCACCCACTCTCTT---TTTTT----CTTAT-TTT--TA--------AAAATTATCCTGA---TTCTG-GG-ATA-GAT-----ACGTA---TT--ATTTT--T-CTTTTCTACG-TACTAACTTTTAGT-TC-TGCTATAATATGCC-A-TTCTAATTGAGATCAT---CTTCACA---A--GTAATGGTCACGCTCTTGTTCATGTATCTTTATT-ACA
gi|12 : TCAC--AGAGC-ACTT-GGG-----C--ATGG-AT-C-AT----GGACATGACCAC-CCCCCC-CCCTTTT---TTTTT----ATTTT-TT----A--------AAAATT---CTTA---T-CTGAGG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTATTAA----T--T--------------TG-C-A-T--TTA---AGATCAT---C--CAAA---A
gi|13 : taaatgtttcctaatctaggtctacttcacatataggACATGTA--T---TTAAT-TGAATAT--ACCT------G-GC-ACTT-GGG---G-C--ATGG-GT-A-AT----GAC-------AC-CCCCCC-CCCCCCA---CTTTT----TTTTT-TTT--------------AATT---CGGA---T-CTG-GT-AAA-GAC-----ACAC----TT--ATTTTGCTTCTTTCCTACGTTATTAG----T--T-GT-TG--A-AATATG-C-ACT--TAA---AGATa
gi|14 : CCCAC--AG-AC-ACTT-GGG---GGC--ATGG-AT-C-AT----G---------AC-CCACCC-CC---------TTCC----CCCTA-TTTATTATAAAAAAAAAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTTAGTTCTTTTCTACGTTAA-------------T-TG-TA-AGTAAG-C-A-T--TAA---AGATCAT---T--CAGA---AT-Gaccaaga
gi|15 : tgtaCAC--AG-AC-ACCT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----C----------------------AATT---CTGA---T-CTA-GG-ATA-GAC-----AC------TT--GTTTT--T-ATTCTCTACGTTATT------TA-TGTT-TG-CA-AATATG-C-A-T--TAA---AAGTCAT---C--AGAA---AT-GTT
gi|17 : ctttttcatggtgaaagAAAGAAATATAAGTGT-GT---------CTATCCCGAATCAGAATTTTTATTT--TTTAAAA-------A------A--------------------AAAGG-AGGG--G-G---GTG--T-------CATGATCCAGGCCCCAAGT-GCCTGTGCCCAAAA-CAATAAACGCTAGAAAAAAA---TGT----TG
gi|17 : gCAC--AG-GC-ACTT-GGG---G-C--CTGG-AT-C-AT----G---------ACACCCCCC-TCCTTTT---TTTTTAAAA---------AATA--------AAAATT---CTGA---T-TCG-GG-ATA-GAC-----ACAC----TT--A-TAT--TTCTTTTCtc
gi|18 : gcaacatttttttctagcgtttattgttttgggC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCTTTTT---TTTTT----TT--------------------AAATT---CTGT---T-CTG-GG-ATA-GATG----ACAC-----T--A--TT--TTCTTTTCTACGTTATT-A----TG-T-TC-TG-TA-AATATG-C-A-T--TCAT--TGATCAC---C--CA
gi|19 : C-CCCCCC-TCTTTTT---TTTTT----TTTTT-TTTAT--------------TT---TTG-----------------GAC-----ACAC----TC--ATTTT--TGATT---CATGTTTCTA----------TT-TG-TA-TAAATG---A-T--TAA---AGATCAC---C--CACA---ATGGTTATTTTTCGTCTC-TG-TACCGT-TGTTCA
gi|2 : cGGTGGTAGTTA-----AAAAAAAAATAATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTA----G-CAAGTAGATAATG-G---------------------GGACT-GCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAACAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAAAATCGTGA------A--------TAATAG-TGATAAAAGG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGTTAA-CTT--TT--AAAATACCC-TGATCTAAAAA----TATT-CAGTAT---CCATG-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--GACGTTGAAGCAAAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGC--TTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAG-AATTATAGTATGAATTAGAAAGATCCTT-T-GTATTAATA---CGGTATTAAAAA-TAATTCTTA----------------------------AAAT-AACA--TCATTT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATA-ATATC-AAATAGTTT-ACAC--AAGGTTTAA-G-ATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACATTGTC-GTTCTA-TTCA-TAA-GTTATGGAATAGAAT--TGCTA-TGATTTTTATGA-T-------GGC------AACGAATATTTAAATTCTTCG--TACAATGAGACCA-GTTTTGCTGTCT--ATT-T-TTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATA-TTGCCTCACTGAG-GC-ACTT-GGG---G-C--AAGG-AT-C-AT----G---------AC-CCCCCC-C---TTT---TTTTT----CTTTT-CTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAC----GT--ATTTT--T--CTTTCTACGTTAATAA----TA-T-TT-TGTTA-AATATG-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTA-TTTTCCTCTC-TG-TCACGTAT-TTCATTGACATTATAAAGGGGCA-GGATCATG--------------CATGACCCCCCCCCC----------TT-TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT---TTTCTTACGTTGATTATGTTC-AAGTGTCT--GTGATA-TTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACA-TACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC---A-C---ATCTACAT-GTAA--CTATTACATGAT-----ATA--TTGTAAA-TACATTGTGCCCAAAATTGGAA--ATAAATTACT---TTGTAGTTATGATAAA--TA---ACAAAT-AAACG-TAA---TTATTTT-AAAATACATAATTTA-ATATTACATGTTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGGTTATT-----C-GG-GGTAAAAATAC-GTTCCC--TTGGT---GA-TCTG-CCCAAACT--AGAAAT--GACAACGAATGAGAG-----TC-CTGAGGAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-ATTTT--T-CCATTTCAATGTGTA-TGGTCAG-TGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACC-T-AAT------CAGGGGG--AGATAACAG-CGAC-GGTATCGT-GAGAAAAGTACACCATT
gi|20 : ATA-T-CAGTT-AAACTAA---------CAAATCCATGCATTT-------ATAGCCAGTTTTATTA-TTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATGT-AGATATTTAT-TGtcagtcgttat
gi|21 : ttCCCCC-CCCTTTT---TTTTT----TTTT-------------------AATT---C-------------------GAC-----ACAC----TT--A-TTT--TTCCTTTCTACGTTATTTA----TG-T-TTATT-TG-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-ATg
gi|22 : CGC--AG-GC-ACTT-GGG-----C--ATGG-AT-C-AT----G---------ACACCCCCC-CCCCAAT---T--------ATTTT-TGTATT--------------T---CTGA---T-TTG-GG-ATA-GACCAGAGACAC----AT--AT
gi|24 : TCAC--AG-GC-ACTTTGGGCGTG-C--ATGG-AT-C-AT----G---------AC-CCGCCC-CCTT
gi|3 : aGTTTTCAAGTTAA-TGT-GTTCAGTGTTTAACGTAGGTATTGTATCGTAAAGAAAA-TAAG-GT-GTAGTGGGTTCCTACCCCTGATTAGA------ATT------AGCG-------G------A--------TAA------A-GAGAGGTGGAGTGG-GCCTGTGTGT-------CATGA-CCTTGCCC-AAGTTGCCTGTG------AGTTAACAA------AGAGAAA---CGTGGTCCGGTAAACTTGTTT--AGAAT-CCCGTGA-ATAAAAAAACGTATTTCAGTATTGACCATTTATGGGTTGGT-CGCTTGA-TT-TGAATCACTATGACGT-GGAAGG-C---------AGAA-TTGGGTTGCTAAGAAATGATTTCAGTTTGCTTC------TTTTTTT--TTTTTTTTGATTGTCAGATTGAA-GATTAGAAGGTGAACAGAG-TTATAGTATGAATAAGAAAGATCCTTGT-GTA-TAGTATGACGGTATTAAAAA-TAATTCTTACTGGAAATGGTGTATCACTGTACCGTGCAAATTCA-AGGTCA-TTGCTT-TTCATTCCAAATGATTGACTGGAATTTCTGCCATCATATATATATTGAAATAGTTTCACACA-A-GGTTTAAAGAATTTTAACATGGTAAAT-TATGCATTTAACTATTGACGAAAAC-TAAGTTGTTTTCACA-TGTTTGTTCTAATTCAATAA-GTTAT-AAATAGGATAATGCTAATGATTTTTATGA-TTCTGCAAGGCGACATTAACGAACATTTAGAAT-TTCGAGTACACTGAGACCGTGTTTTG-AGTTTTAATTATATTTCCAGGAATT-TTTGT---GACACGTG--TGTTTTTGTGTTATTATTTGCC-CAC--AG-GC-AGTT-GGG---G-CCAACGG-ATGC-TT----GC--------GC-CCCCCC-CCCCTTT---TCTTT----CCCTT-T--ATTA--------AAAAAT---CAGA---T-GTG-GGAATAGGAC------CACAATGTTAAATTTT--TTC-TTTCTACGTTAATAA----TATT-TT-TG-T--AATATG-CTA-T--TAA---AAATCATGGGC--TACAGGCAT-GTTAGTTTNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTACCCCTCCCCCCCCTACCCTGTTGTTTTTCTAAGATTCAAGATCTGAGATAGATTACACTTATTTTTGCTTTTTCTACGTTAAATATG
gi|4 : TTACT-TTTGGTTCCCTAC-TC-CACTA-GCCC--CGCCAT-ACTTCCGCGCA-AGGG--AAATAACCGCc
gi|4 : aatggccaacttctattGGTGGTAGTTATTAAAAAAAAAAAA-AATCACTGATAAT-AAATT-AAA-TAC---------TA------------T--------TCGCCAGTTTTATTAATTTT-------AAACT-A----------CCCCAGATT-AATTTCA-TTAAAAAAacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcggtggtagttattaaaaaaaaaaaaaatcactgataataaattaaatactattcgccagttttattaattttaaactaccccagattaatttcattaaaaaa
gi|5 : aatggccaacttctattgcggttatttcccttgcgcggaagtatggcggggctagtggagtagggaaccaaaagtaaacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcTACCCCAGATTA--------ATTTCATTAAAAA-------A------AACCGTGAATAATAG-TGA-TAAAGG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCA-GT-GCC-GTG--------TTACAAA------AAAAAAAAATTGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAA-----TATT-CAGTAT---CCATT-ATG--TTG-TTC--CTGACTTGTGAA-CA-TA-GACGTTGAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGAATTTCTTTGCTTTTTTTTC--TGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATCGTATGATTTG--AAGATCCTT-TTGTA-TAATAC--CGGTATTAAAAAATAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---TCTAAATTCCAAAT-ATTGAC--GA-TAT-TGC-ATCA-ATATATATC-AA-T-GTTTCACACA-AGGGTTTAA-GAATTA-AACATCGTA--TTGATGCAT---A-TGTTGACGAAAACATAAGTT--TTTACCA-TGTC-GTTCTA-TTCA-TAAAGTTAT-GAATAGAAT--TGCTA-TGA-TTTTATGAGTTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA-T-TT-GTTTGGATAC-TGGTT---TTTGT-TTAATATTTGCCTCACT-AT-G--ACTT-GGG---G-C--AAGG-AT-C-ATTGCCG---------CC-CCCTCC-CCCTTTTTTCTTTCT----CTTTT-CTTATT---------AAAATC---CAGA---T-CTG-GGCATA-GAC-----AC
gi|6 : C-AAGTGTCTTGGTGATATTT-GCCGTGTAGAATTTTGCAAAGTCTAGCTTAATGTACATCGTACGATATTTTTCTT--TCA---TTTGTCAATGGTGTGGTTATCATTGAAAC---ATGAACTTAGTCCTTCTATTGTATAATCACGAATAGTCTG-AAAATACATTGTGCCCAAAATCGGGAATATAAATTACTTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCTAAAAACA-----TATATATT-CAT-TTTGTGGCG--TAT-TAATTCATGGTAGTGGTTCTGTGG-TATTCGAGTC-TGTGGTAAAATTACTGTTCGC--TA-GTTGGGATTCTGTCCCAAACTCGAAAAATGGGACAACGAATG-GAG-----GCGC----GAGAAGTTATGCGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTTTGTTTGGG-T-TGTTT-TTTTT--TTCCATTTCATTTCGTACTGTTCAGACGAGTTCGATCGCCGGTTGGGCCAACATAGCTGAGTTGAGAATTCACACTGAGGCATCGCCATTACTGCTTGGT-CCCTACTTCAAGACAGGCGCCACGCCTG-AAT------CA-GGGGGAAGGTAACAGGCGCCGGGTATCGTAGAGAAAAGTATTCCATTtcgtgaaacagagggatacacaaacaacat
gi|7 : ATA-TGCAATTTAAACTAAGCAAATCCCCA------------TGCAGTCCATGGCCGTTTTCATTATTTTTTGAAGAAAAACTAATTTCCATTCGCCTCTTATTAAATTTAAGTTAATAAATTCGCAAT-TGTACATG-TAATTAGTCAAGAAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCAA-CTGTTTGAACGACATCGCTTGATTGCATGTTTTCAACT--AGTTTGGTTC-GT---TAAGGT----ATTGTATT-TAGAGAAAATAAAGTGTGGG---------CTAGT---GTCTAGA-----TA------TAAAAAAGAC---A------A--------TAATAGTTGA-TAAAGGTGGTG--GAG---ATG-GCGTTGTGTCATGACCATTTCGCCAAGT-GCTT-TG------A-TTACAAA------AAagagtatacatta
gi|8 : attgtttgaaactctattccacatgggtcattgatgaaattgatgcat-GAT-----ACAC----TT--ATTTT---TCTTTTCTACGTTAATTA----TG-T-TT-TG-TA-AATATG-C-A-T--TAA---AAATCAT---C--CAAA---AT-GTTATTTTTCCTCTT-TG-TCACGTATATCC
gi|8 : TCAC--AG-AC-ACTT-AGG---A-C--AAGA-AT-C-TT----G---------AC-CCCCCC-CCCTTTT---TTTC---------------------------AAATT---CTGATCTT-CTG-GG-ATA-TAC-----cagaagatcagaatttgaaaaaaaggggggggggtcaagattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|8 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacTGTCCTAAGTGTCT--GTGATATTT-GCC-TGTA--ATGTT-CA--GTCTAGCTTTATGCATAAAGTAC---ATTTTTCTTCA------TTTGTCA-TGGTGTG--TATCATTGAA-CTTAATCC------TAA--CTATTGCACTAT-----ATA--T-----A-TACAtatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|9 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattctT-GTTCGGTGG-TATTC----T-G-TGGTAAAAATAC-GTTCCCATT--GT---GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACG-TTTCCGTTT-GG-TTCG--T-TTTTTAATCCCATTTCAATTTGTACTGGCCAGACGAGTTCGATCGCTGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-GCGCGTCGCCATTACT-CTTGGT-CCCTACTTC-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTCATTGTTTCCCCTCCCAAAAATTTAGCATTTTTTCCAAATCATATCTTTATTTTTCCAATTTCAAAACAAAACAGAGATCACCGTATATAAATTAATTTTGCTGACAAAGAGAAAATACTTTTTTTTTTCATTTCAATTTCATTCTCCAAACCCCTGTACATGCTAAAGATTATGTGATATCAGATGAATGTGTAAAACAATAGAGGTATCCATTTAAGCAGATTTTTAGC
Unaligned ( gi|16 ): CAATGATTTTTTTCGGGCCAATATGCCACCGATAATGGGTGGTTTCCCCTCCCAAAAACTTAGTATTTTTTCCCAATCTGAATCATACATCTATTTTTTTCCCCAATTTCAAAAAAGTTCAGAAAAAGCA
Unaligned ( gi|23 ): AGCACCGTGTGTCATCATCTATACAGCTAGTAAAAACAATTCGTTCC
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 33333 22 77777777777777777777777777777777 2222222 1 1 1 1 444444444444444 1 11 1 1 1111 1 111 1111 1 333333333 111111 111 66666666666666666666666 11 1 111 2222222 11 22222222 111111 111 1111 1 11 11 1 1 22222 1 111 11 11 111111 1 1 1 1 1 44444444444444 1 555555555555 1 1 111 1 222 1 0000000000000000000000000000 1 1111 1 11111 1 11 1 1 1 11 1 1 1111 11111 1 11 1 1 1 1 1 1 11 1 222222222 222222 1 11 1 11 1 11 1 1 111 111111 11 111111111 55555555555555555555555555 222222222 222222222 1111 888888888888888 11 1 555555555 11 1 1 333 1 11 1 1 11 1 11 111111 1 11 22222222222222222222222222222 22222 222222 1 2222222 1 222 1 1 11 11 1 1 1 2222222222 1 4444444444 1 1 11 11 3333333333333 11 1 1 111 1111 11 11 4444444444444 1 1 11 111 222222 1 11 1 1
lowQualScore : 33333 00 0 8 8 8 55555555555555555555555555555555 6 6666666 8 0 8 0 0 0 7 7 3 222222222222222 3 7 44 3 3 4444 0 3 777 7777 0 6 0 8 222222222 1 999999 222 33333333333333333333333 7777 00 6 3 99 6 111 6 1111111 77 6 6 55555555 999999 444 7777 0 33 33 0 0 3 44444 0 777 99 33 444444 2 0 0 0 0 0 33333333333333 0 111111111111 3 0 2 3 3 3 0 3 3 2 111 0 7 000 0 7777777777777777777777777777 0 4444 0 88888 0 33 3 0 2 0 3 0 3 3 2 33 7 3 0 3 0 4444 88888 0 33 0 0 0 0 0 0 33 0 3 555555555 888888 0 33 0 2 33 0 3 33 3 0 0 777 666666 8 11 00 2 2 2 99999 33 2 2 2 6666 888888888 5 2 444 22222222222222222222222222 444 2 444 2 2 5 2 88888 8888 33 1 88 4 1 111111111 3 3 6 3 3 3 3 44 999 666 55 777 4 3 6 6 0 7 666666666 4444 2 5 333333333333333 88 3 333333333 88 3 3 000 0 33 3 5 0 33 0 33 0 2 2 2 666666 0 33 99999999999999999999999999999 0 55555 222222 0 0 7 7 7 7 3333333 3 7 333 2 7 7 7 3 88 7 88 3 0 0 9999999999 3 0 2 5555555555 0 0 77 22 3 1111111111111 33 0 2 0 111 4444 33 6 1 2 3 33 8888888888888 0 2 8 8 0 8 0 33 777 888888 0 33 8 3 3 1
lowQualScore : ..... .. . . . . ................................ . ....... . . . . . . . . . ............... . . .. . . .... . . ... .... . . . . ......... . ...... ... ....................... .... .. . . .. . ... . ....... .. . . ........ ...... ... .... . .. .. . . . ..... . ... .. .. ...... . . . . . . .............. . ............ . . . . . . . . . . ... . . ... . ............................ . .... . ..... . .. . . . . . . . . . .. . . . . . .... ..... . .. . . . . . . .. . . ......... ...... . .. . . .. . . .. . . . ... ...... . .. .. . . . ..... .. . . . .... ......... . . ... .......................... ... . ... . . . . ..... .... .. . .. . . ......... . . . . . . . .. ... ... .. ... . . . . . . ......... .... . . ............... .. . ......... .. . . ... . .. . . . .. . .. . . . . ...... . .. ............................. . ..... ...... . . . . . . ....... . . ... . . . . . .. . .. . . . .......... . . . .......... . . .. .. . ............. .. . . . ... .... .. . . . . .. ............. . . . . . . . .. ... ...... . .. . . . .
lowQualScore : 33333 77 7 0 0 0 00000000000000000000000000000000 0 0000000 0 8 0 0 0 0 3 3 3 777777777777777 3 3 00 3 3 8888 0 2 555 2222 0 0 8 0 000000000 8 888888 333 77777777777777777777777 2222 00 7 3 22 7 777 7 7777777 22 7 3 00000000 222222 000 0000 0 88 88 0 0 2 55555 0 555 22 88 888888 5 0 0 0 0 0 88888888888888 0 222222222222 2 0 5 2 2 2 0 2 2 5 000 0 0 222 0 8888888888888888888888888888 0 8888 0 55555 0 88 2 0 5 0 2 0 2 2 5 22 0 2 0 2 0 8888 55555 0 88 0 0 0 0 0 0 88 0 2 555555555 888888 0 88 0 5 88 0 2 88 2 0 0 555 000000 0 66 77 9 9 9 00000 99 9 9 9 1111 222222222 3 5 777 44444444444444444444444444 777 8 777 7 7 3 5 88888 9999 99 5 55 2 0 555555555 3 3 7 3 3 3 3 66 222 444 00 000 4 2 7 7 8 0 777777777 2222 2 8 333333333333333 33 3 333333333 33 3 3 333 0 88 2 5 0 88 0 88 2 5 5 5 222222 0 88 88888888888888888888888888888 2 00000 000000 0 7 3 3 3 3 7777777 3 3 333 0 3 3 3 3 33 3 33 3 0 0 8888888888 2 0 5 2222222222 0 0 00 55 2 2222222222222 88 0 5 0 000 8888 88 5 0 5 2 88 5555555555555 0 5 0 0 8 0 0 88 888 888888 0 88 8 3 3 0
consensus : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGA-TAAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
Reference ( family-1587 ) : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGA-NAAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCAGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
gi|1 : GATGGTAGTTA-----AAAAAAAA----TCACTGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGACGTACAAGTATGGGGACTTGCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------ACCGTGGA--------TAATAG-TGA-TAAAAGG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAT---TGT----TTGTAA-CCT--TTTAAAAAG-CCC-TGATCTAAAAA----TATT-CAGTAT---CCAT--ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAATGTG------------ATGATTTTAATTGCTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TA-TAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACACAAGG-TTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAAATG-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATTATT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCACTGAG-GC-ACTT--GG---G-C--AAGG-AT-C-A-----G---------AC-CCCCCC-CCTTTTT---TTTTT----CTTTTCTTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAT----GT--ATTTT--TTCTTTTCTACGTTAATAA----TA-T-TT-TG-TA-AATATT-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCAGGATCATG---------------CATGACCC--CCTCCCTTTT---------TTTTTTTA--ATTC-AGATCTGAGATTGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC--AAC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTA-AAA-TACATTGTGCCCAAAATTGGAAATA-AAA----TTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTTAAAAAACATAATTTATATATTACAT-TTTGAGGCGTATATATA--TCAT-ATAGT-GTTCTGTGG-TATTC----CGGGTGGTAAAAA--------------------GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAGTCACTGAGC----GAGAG--TATCGGGACGCAAACAAGAAATTAATTGAAAGGTGAATACGGTTTCCGTTT-GGTT-CG--TGTTTTT--TCCCATTTCAATGTGTACTGGTCTGATGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCG-CATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACCCTGAAT------CA-GGGG--AGATAACAGCTGAC-GGTATCGT-GAGAAAAGTACCCCATT
gi|11 : C--AG-GCGACTT-GGGA--G-C--ATGGGAT-CTAT--------------AC-CCACCCACTCTCTT---TTTTT----CTTAT-TTT--TA--------AAAATTATCCTGA---TTCTG-GG-ATA-GAT-----ACGTA---TT--ATTTT--T-CTTTTCTACG-TACTAACTTTTAGT-TC-TGCTATAATATGCC-A-TTCTAATTGAGATCAT---CTTCACA---A--GTAATGGTCACGCTCTTGTTCATGTATCT---------TTA----TT-ACA
gi|12 : TCAC--AGAGC-ACTT-GGG-----C--ATGG-AT-C-AT----GGACATGACCAC-CCCCCC-CCCTTTT---TTTTT----ATTTT-TT----A--------AAAATT---CTTA---T-CTGAGG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTATTAA----T--T--------------TG-C-A-T--TTA---AGATCAT---C--CAAA---A
gi|13 : taaatgtttcctaatctaggtctacttcacatataggACATGTA--T---TTAAT-TGAATAT--ACCT------G-GC-ACTT-GGG---G-C--ATGG-GT-A-AT----GAC-------AC-CCCCCC-CCCCCCA---CTTTT----TTTTT-TTT--------------AATT---CGGA---T-CTG-GT-AAA-GAC-----ACAC----TT--ATTTTGCTTCTTTCCTACGTTATTAG----T--T-GT-TG--A-AATATG-C-ACT--TAA---AGATa
gi|14 : CCCAC--AG-AC-ACTT-GGG---GGC--ATGG-AT-C-AT----G---------AC-CCACCC-CC---------TTCC----CCCTA-TTTATTATAAAAAAAAAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTTAGTTCTTTTCTACGTTAA-------------T-TG-TA-AGTAAG-C-A-T--TAA---AGATCAT---T--CAGA---AT-Gaccaaga
gi|15 : tgtaCAC--AG-AC-ACCT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----C----------------------AATT---CTGA---T-CTA-GG-ATA-GAC-----AC------TT--GTTTT--T-ATTCTCTACGTTATT------TA-TGTT-TG-CA-AATATG-C-A-T--TAA---AAGTCAT---C--AGAA---AT-GTT
gi|17 : ctttttcatggtgaaagAAAGAAATATAAGTGT-GT---------CTATCCCGAATCAGAATTTTTATTT--TTTAAAA-------A------A--------------------AAA-GG-AGGG--G-G---GT--GT-------CATGATCCAGGCCCCAAGT-GCCTGTGCCCAAAA-CAATAAACGCTAGAAAAAAA---TGT----TG
gi|17 : gCAC--AG-GC-ACTT-GGG---G-C--CTGG-AT-C-AT----G---------ACACCCCCC-TCCTTTT---TTTTTAAAA---------AATA--------AAAATT---CTGA---T-TCG-GG-ATA-GAC-----ACAC----TT--A-TAT--TTCTTTTCtc
gi|18 : gcaacatttttttctagcgtttattgttttgggC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCTTTTT---TTTTT----TT--------------------AAATT---CTGT---T-CTG-GG-ATA-GATG----ACAC-----T--A--TT--TTCTTTTCTACGTTATT-A----TG-T-TC-TG-TA-AATATG-C-A-T--TCAT--TGATCAC---C--CA
gi|19 : C-CCCCCC-TCTTTTT---TTTTT----TTTTT-TTTAT--------------TT---TTG-----------------GAC-----ACAC----TC--ATTTT--TGATT---CATGTTTCTA----------TT-TG-TA-TAAATG---A-T--TAA---AGATCAC---C--CACA---ATGGTTATTTTTCGTCTC-TG-TACCGT-TGT---------TCA----
gi|2 : cGGTGGTAGTTA-----AAAAAAAAATAATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTA----G-CAAGTAGATAATG-G---------------------GGACT-GCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAACAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAAAATCGTGA------A--------TAATAG-TGATAAAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGTTAA-CTT--TT--AAAATACCC-TGATCTAAAAA----TATT-CAGTAT---CCATG-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--GACGTTGAAGCAAAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGC--TTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAG-AATTATAGTATGAATTAGAAAGATCCTT-T-GTATTAATA---CGGTATTAAAAA-TAATTCTTA----------------------------AAAT-AACA--TCATTT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATA-ATATC-AAATAGTTT-ACAC--AAGGTTTAA-G-ATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACATTGTC-GTTCTA-TTCA-TAA-GTTATGGAATAGAAT--TGCTA-TGATTTTTATGA-T-------GGC------AACGAATATTTAAATTCTTCG--TACAATGAGACCA-GTTTTGCTGTCT--ATT-T-TTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATA-TTGCCTCACTGAG-GC-ACTT-GGG---G-C--AAGG-AT-C-AT----G---------AC-CCCCCC-C---TTT---TTTTT----CTTTT-CTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAC----GT--ATTTT--T--CTTTCTACGTTAATAA----TA-T-TT-TGTTA-AATATG-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTA-TTTTCCTCTC-TG-TCACGTAT-T---------TCA----TTGACATTATAAAGGGGCAGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT---TTTCTTACGTTGATTATGTTC-AAGTGTCT--GTGATA-TTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACA-TACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC---AC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTGTAAA-TACATTGTGCCCAAAATTGGAA--ATAAATTACT---TTGTAGTTATGATAAA--TA---ACAAAT-AAACG-TAA---TTATTTT-AAAATACATAATTTA-ATATTACATGTTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGGTTATT-----C-GG-GGTAAAAATAC-GTTCCC--TTGGT---GA-TCTG-CCCAAACT--AGAAAT--GACAACGAATGAGAG-----TC-CTGAGGAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-ATTTT--T-CCATTTCAATGTGTA-TGGTCAG-TGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACC-T-AAT------CAGGGGG--AGATAACAG-CGAC-GGTATCGT-GAGAAAAGTACACCATT
gi|20 : ATA-T-CAGTT-AAACTAA---------CAAATCCATGCATTT-------ATAGCCAGTTTTATTA-TTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATGT-AGATATTTAT-TGtcagtcgttat
gi|21 : ttCCCCC-CCCTTTT---TTTTT----TTTT-------------------AATT---C-------------------GAC-----ACAC----TT--A-TTT--TTCCTTTCTACGTTATTTA----TG-T-TTATT-TG-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-ATg
gi|22 : CGC--AG-GC-ACTT-GGG-----C--ATGG-AT-C-AT----G---------ACACCCCCC-CCCCAAT---T--------ATTTT-TGTATT--------------T---CTGA---T-TTG-GG-ATA-GACCAGAGACAC----AT--AT
gi|24 : TCAC--AG-GC-ACTTTGGGCGTG-C--ATGG-AT-C-AT----G---------AC-CCGCCC-CCTT
gi|3 : aGTTTTCAAGTTAA-TGT-GTTCAGTGTTTAACGTAGGTATTGTATCGTAAAGAAAA-TAAG-GT-GTAGTGGGTTCCTACCCCTGATTAGA------ATT------AGCG-------G------A--------TAA------A-GAGA-GGTGGAGTGG-GCCTGTGTGT-------CATGA-CCTTGCCC-AAGTTGCCTGTG------AGTTAACAA------AGAGAAA---CGTGGTCCGGTAAACTTGTTT--AGAAT-CCCGTGA-ATAAAAAAACGTATTTCAGTATTGACCATTTATGGGTTGGT-CGCTTGA-TT-TGAATCACTATGACGT-GGAAGG-C---------AGAA-TTGGGTTGCTAAGAAATGATTTCAGTTTGCTTC------TTTTTTT--TTTTTTTTGATTGTCAGATTGAA-GATTAGAAGGTGAACAGAG-TTATAGTATGAATAAGAAAGATCCTTGT-GTA-TAGTATGACGGTATTAAAAA-TAATTCTTACTGGAAATGGTGTATCACTGTACCGTGCAAATTCA-AGGTCA-TTGCTT-TTCATTCCAAATGATTGACTGGAATTTCTGCCATCATATATATATTGAAATAGTTTCACACA-A-GGTTTAAAGAATTTTAACATGGTAAAT-TATGCATTTAACTATTGACGAAAAC-TAAGTTGTTTTCACA-TGTTTGTTCTAATTCAATAA-GTTAT-AAATAGGATAATGCTAATGATTTTTATGA-TTCTGCAAGGCGACATTAACGAACATTTAGAAT-TTCGAGTACACTGAGACCGTGTTTTG-AGTTTTAATTATATTTCCAGGAATT-TTTGT---GACACGTG--TGTTTTTGTGTTATTATTTGCC-CAC--AG-GC-AGTT-GGG---G-CCAACGG-ATGC-TT----GC--------GC-CCCCCC-CCCCTTT---TCTTT----CCCTT-T--ATTA--------AAAAAT---CAGA---T-GTG-GGAATAGGAC------CACAATGTTAAATTTT--TTC-TTTCTACGTTAATAA----TATT-TT-TG-T--AATATG-CTA-T--TAA---AAATCATGGGC--TACAGGCAT-GTTAGTTTNNNNNNN-NN-NNNNNNNNNN---------NNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTACCCCTCC-CCCCCCTACCCTGTTGTTTTTCTAAGATTCAAGATCTGAGATAGATTACACTTATTTTTGCTTTTTCTACGTTAAATATG
gi|4 : TTACT-TTTGGTTCCCTAC-TC-CACTA-GCCC--CGCCAT-ACTTCCGCGCA-AGGG--AAATAACCGCc
gi|4 : aatggccaacttctattGGTGGTAGTTATTAAAAAAAAAAAA-AATCACTGATAAT-AAATT-AAA-TAC---------TA------------T--------TCGCCAGTTTTATTAATTTT-------AAACT-A----------CCCCAGATT-AATTTCA-TTAAAAAAacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcggtggtagttattaaaaaaaaaaaaaatcactgataataaattaaatactattcgccagttttattaattttaaactaccccagattaatttcattaaaaaa
gi|5 : aatggccaacttctattgcggttatttcccttgcgcggaagtatggcggggctagtggagtagggaaccaaaagtaaacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcTACCCCAGATTA--------ATTTCATTAAAAA-------A------AACCGTGAATAATAG-TGA-TAAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCA-GT-GCC-GTG--------TTACAAA------AAAAAAAAATTGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAA-----TATT-CAGTAT---CCATT-ATG--TTG-TTC--CTGACTTGTGAA-CA-TA-GACGTTGAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGAATTTCTTTGCTTTTTTTTC--TGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATCGTATGATTTG--AAGATCCTT-TTGTA-TAATAC--CGGTATTAAAAAATAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---TCTAAATTCCAAAT-ATTGAC--GA-TAT-TGC-ATCA-ATATATATC-AA-T-GTTTCACACA-AGGGTTTAA-GAATTA-AACATCGTA--TTGATGCAT---A-TGTTGACGAAAACATAAGTT--TTTACCA-TGTC-GTTCTA-TTCA-TAAAGTTAT-GAATAGAAT--TGCTA-TGA-TTTTATGAGTTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA-T-TT-GTTTGGATAC-TGGTT---TTTGT-TTAATATTTGCCTCACT-AT-G--ACTT-GGG---G-C--AAGG-AT-C-ATTGCCG---------CC-CCCTCC-CCCTTTTTTCTTTCT----CTTTT-CTTATT---------AAAATC---CAGA---T-CTG-GGCATA-GAC-----AC
gi|6 : C-AAGTGTCTTGGTGATATTT-GCCGTGTAGAATTTTGCAAAGTCTAGCTTAATGTACATCGTACGATATTTTTCTT--TCA---TTTGTCAATGGTGTGGTTATCATTGAA--------ACATGAACTTAGTCCTTCTATTGTATAATCACGAATAGTCTG-AAAATACATTGTGCCCAAAATCGGGAATATAAATTACTTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCTAAAAACA-----TATATATT-CAT-TTTGTGGCG--TAT-TAATTCATGGTAGTGGTTCTGTGG-TATTCGAGTC-TGTGGTAAAATTACTGTTCGC--TA-GTTGGGATTCTGTCCCAAACTCGAAAAATGGGACAACGAATG-GAG-----GCGC----GAGAAGTTATGCGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTTTGTTTGGG-T-TGTTT-TTTTT--TTCCATTTCATTTCGTACTGTTCAGACGAGTTCGATCGCCGGTTGGGCCAACATAGCTGAGTTGAGAATTCACACTGAGGCATCGCCATTACTGCTTGGT-CCCTACTTCAAGACAGGCGCCACGCCTG-AAT------CA-GGGGGAAGGTAACAGGCGCCGGGTATCGTAGAGAAAAGTATTCCATTtcgtgaaacagagggatacacaaacaacat
gi|7 : ATA-TGCAATTTAAACTAAGCAAATCCCCA------------TGCAGTCCATGGCCGTTTTCATTATTTTTTGAAGAAAAACTAATTTCCATTCGCCTCTTATTAAATTTAAGTTAATAAATTCGCAAT-TGTACATG-TAATTAGTCAAGAAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCAA-CTGTTTGAACGACATCGCTTGATTGCATGTTTTCAACT--AGTTTGGTTC-GT---TAAGGT----ATTGTATT-TAGAGAAAATAAAGTGTGGG---------CTAGT---GTCTAGA-----TA------TAAAAAAGAC---A------A--------TAATAGTTGA-TAAA-GGTGGTG--GAG---ATG-GCGTTGTGTCATGACCATTTCGCCAAGT-GCTT-TG------A-TTACAAA------AAagagtatacatta
gi|8 : attgtttgaaactctattccacatgggtcattgatgaaattgatgcat-GAT-----ACAC----TT--ATTTT---TCTTTTCTACGTTAATTA----TG-T-TT-TG-TA-AATATG-C-A-T--TAA---AAATCAT---C--CAAA---AT-GTTATTTTTCCTCTT-TG-TCACGTATATCCCAGAAGATCAGAATTTGAAA--AAAAGGGGGGGGGGTCA
gi|8 : TCAC--AG-AC-ACTT-AGG---A-C--AAGA-AT-C-TT----G---------AC-CCCCCC-CCCTTTT---TTTC---------------------------AAATT---CTGATCTT-CTG-GG-ATA-TAC-----agattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|8 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacTGTCCTAAGTGTCT--GTGATATTT-GCC-TGTA--ATGTT-CA--GTCTAGCTTTATGCATAAAGTAC---ATTTTTCTTCA------TTTGTCA-TGGTGTG--TATCATTGAACTTAATCC---------TAA-----CTATTGCACTAT-----ATA--T-----A-TACAtatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|9 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattctT-GTTCGGTGG-TATTC----T-G-TGGTAAAAATAC-GTTCCCATT--GT---GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACG-TTTCCGTTT-GG-TTCG--T-TTTTTAATCCCATTTCAATTTGTACTGGCCAGACGAGTTCGATCGCTGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-GCGCGTCGCCATTACT-CTTGGT-CCCTACTTC-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTCATTGTTTCCCCTCCCAAAAATTTAGCATTTTTTCCAAATCATATCTTTATTTTTCCAATTTCAAAACAAAACAGAGATCACCGTATATAAATTAATTTTGCTGACAAAGAGAAAATACTTTTTTTTTTCATTTCAATTTCATTCTCCAAACCCCTGTACATGCTAAAGATTATGTGATATCAGATGAATGTGTAAAACAATAGAGGTATCCATTTAAGCAGATTTTTAGC
Unaligned ( gi|16 ): CAATGATTTTTTTCGGGCCAATATGCCACCGATAATGGGTGGTTTCCCCTCCCAAAAACTTAGTATTTTTTCCCAATCTGAATCATACATCTATTTTTTTCCCCAATTTCAAAAAAGTTCAGAAAAAGCA
Unaligned ( gi|23 ): AGCACCGTGTGTCATCATCTATACAGCTAGTAAAAACAATTCGTTCC
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 33333 22 77777777777777777777777777777777 2222222 1 1 1 1 444444444444444 1 11 1 1 1111 1 111 1111 1 333333333 111111 111 66666666666666666666666 111111 1 111 2222222 11 22222222 111111 111 1111 1 11 11 1 1 22222 1 111 11 11 111111 1 1 1 1 1 44444444444444 1 555555555555 1 1 111 1 222 1 0000000000000000000000000000 1 1111 1 11111 1 11 1 1 1 11 1 1 1111 11111 1 11 1 1 1 1 1 1 11 1 222222222 222222 1 11 1 11 1 11 1 1 111 111111 11 111111111 55555555555555555555555555 222222222 222222222 1111 888888888888888 11 1 555555555 11 1 1 333 1 11 1 1 11 1 11 111111 1 11 22222222222222222222222222222 22222 222222 1 2222222 1 222 1 1 11 11 1 1 1 2222222222 1 4444444444 1 1 11 11 3333333333333 11 1 1 111 1111 11 11 4444444444444 1 1 11 111 222222 1 11 1 1
lowQualScore : 33333 00 0 8 8 8 55555555555555555555555555555555 6 6666666 8 0 8 0 0 0 7 7 3 222222222222222 3 7 44 3 3 4444 0 3 777 7777 0 6 0 8 222222222 1 999999 222 33333333333333333333333 3 222222 6 3 99 6 111 6 1111111 77 6 6 55555555 999999 444 7777 0 33 33 0 0 3 44444 0 777 99 33 444444 2 0 0 0 0 0 33333333333333 0 111111111111 3 0 2 3 3 3 0 3 3 2 111 0 7 000 0 7777777777777777777777777777 0 4444 0 88888 0 33 3 0 2 0 3 0 3 3 2 33 7 3 0 3 0 4444 88888 0 33 0 0 0 0 0 0 33 0 3 555555555 888888 0 33 0 2 33 0 3 33 3 0 0 777 666666 8 11 00 2 2 2 99999 33 2 2 2 6666 888888888 5 2 444 22222222222222222222222222 444 2 444 2 2 5 2 88888 8888 33 1 88 4 1 111111111 3 3 6 3 3 3 3 44 999 666 55 777 4 3 6 6 0 7 666666666 4444 2 5 0 333333333333333 88 3 333333333 88 3 3 000 0 33 3 5 0 33 0 33 0 2 2 2 666666 0 33 99999999999999999999999999999 0 55555 222222 0 0 7 7 7 7 3333333 3 7 333 2 7 7 7 3 88 7 88 3 0 0 9999999999 3 0 2 5555555555 0 0 77 22 3 1111111111111 33 0 2 0 111 4444 33 6 1 2 3 33 8888888888888 0 2 8 8 0 8 0 33 777 888888 0 33 8 3 3 1
lowQualScore : ..... .. . . . . ................................ . ....... . . . . . . . . . ............... . . .. . . .... . . ... .... . . . . ......... . ...... ... ....................... . ...... . . .. . ... . ....... .. . . ........ ...... ... .... . .. .. . . . ..... . ... .. .. ...... . . . . . . .............. . ............ . . . . . . . . . . ... . . ... . ............................ . .... . ..... . .. . . . . . . . . . .. . . . . . .... ..... . .. . . . . . . .. . . ......... ...... . .. . . .. . . .. . . . ... ...... . .. .. . . . ..... .. . . . .... ......... . . ... .......................... ... . ... . . . . ..... .... .. . .. . . ......... . . . . . . . .. ... ... .. ... . . . . . . ......... .... . . . ............... .. . ......... .. . . ... . .. . . . .. . .. . . . . ...... . .. ............................. . ..... ...... . . . . . . ....... . . ... . . . . . .. . .. . . . .......... . . . .......... . . .. .. . ............. .. . . . ... .... .. . . . . .. ............. . . . . . . . .. ... ...... . .. . . . .
lowQualScore : 33333 77 7 0 0 0 00000000000000000000000000000000 0 0000000 0 8 0 0 0 0 3 3 3 777777777777777 3 3 00 3 3 8888 0 2 555 2222 0 0 8 0 000000000 8 888888 333 77777777777777777777777 2 888888 7 3 22 7 777 7 7777777 22 7 3 00000000 222222 000 0000 0 88 88 0 0 2 55555 0 555 22 88 888888 5 0 0 0 0 0 88888888888888 0 222222222222 2 0 5 2 2 2 0 2 2 5 000 0 0 222 0 8888888888888888888888888888 0 8888 0 55555 0 88 2 0 5 0 2 0 2 2 5 22 0 2 0 2 0 8888 55555 0 88 0 0 0 0 0 0 88 0 2 555555555 888888 0 88 0 5 88 0 2 88 2 0 0 555 000000 0 66 77 9 9 9 00000 99 9 9 9 1111 222222222 3 5 777 44444444444444444444444444 777 8 777 7 7 3 5 88888 9999 99 5 55 2 0 555555555 3 3 7 3 3 3 3 66 222 444 00 000 4 2 7 7 8 0 777777777 2222 2 8 8 333333333333333 33 3 333333333 33 3 3 333 0 88 2 5 0 88 0 88 2 5 5 5 222222 0 88 88888888888888888888888888888 2 00000 000000 0 7 3 3 3 3 7777777 3 3 333 0 3 3 3 3 33 3 33 3 0 0 8888888888 2 0 5 2222222222 0 0 00 55 2 2222222222222 88 0 5 0 000 8888 88 5 0 5 2 88 5555555555555 0 5 0 0 8 0 0 88 888 888888 0 88 8 3 3 0
consensus : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGAT-AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
Reference ( family-1587 ) : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGAT-AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
gi|1 : GATGGTAGTTA-----AAAAAAAA----TCACTGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGACGTACAAGTATGGGGACTTGCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------ACCGTGGA--------TAATAG-TGAT-AAAAGG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAT---TGT----TTGTAA-CCT--TTTAAAAAG-CCC-TGATCTAAAAA----TATT-CAGTAT---CCAT--ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAATGTG------------ATGATTTTAATTGCTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TA-TAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACACAAGG-TTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAAATG-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATTATT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCACTGAG-GC-ACTT--GG---G-C--AAGG-AT-C-A-----G---------AC-CCCCCC-CCTTTTT---TTTTT----CTTTTCTTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAT----GT--ATTTT--TTCTTTTCTACGTTAATAA----TA-T-TT-TG-TA-AATATT-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCAGGATCATG---------------CATGACCC--CCTCCCTTTT---------TTTTTTTA--ATTC-AGATCTGAGATTGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC--AAC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTA-AAA-TACATTGTGCCCAAAATTGGAAATA-AAA----TTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTTAAAAAACATAATTTATATATTACAT-TTTGAGGCGTATATATA--TCAT-ATAGT-GTTCTGTGG-TATTC----CGGGTGGTAAAAA--------------------GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAGTCACTGAGC----GAGAG--TATCGGGACGCAAACAAGAAATTAATTGAAAGGTGAATACGGTTTCCGTTT-GGTT-CG--TGTTTTT--TCCCATTTCAATGTGTACTGGTCTGATGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCG-CATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACCCTGAAT------CA-GGGG--AGATAACAGCTGAC-GGTATCGT-GAGAAAAGTACCCCATT
gi|11 : C--AG-GCGACTT-GGGA--G-C--ATGGGAT-CTAT--------------AC-CCACCCACTCTCTT---TTTTT----CTTAT-TTT--TA--------AAAATTATCCTGA---TTCTG-GG-ATA-GAT-----ACGTA---TT--ATTTT--T-CTTTTCTACG-TACTAACTTTTAGT-TC-TGCTATAATATGCC-A-TTCTAATTGAGATCAT---CTTCACA---A--GTAATGGTCACGCTCTTGTTCATGTATCT---------TTA----TT-ACA
gi|12 : TCAC--AGAGC-ACTT-GGG-----C--ATGG-AT-C-AT----GGACATGACCAC-CCCCCC-CCCTTTT---TTTTT----ATTTT-TT----A--------AAAATT---CTTA---T-CTGAGG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTATTAA----T--T--------------TG-C-A-T--TTA---AGATCAT---C--CAAA---A
gi|13 : taaatgtttcctaatctaggtctacttcacatataggACATGTA--T---TTAAT-TGAATAT--ACCT------G-GC-ACTT-GGG---G-C--ATGG-GT-A-AT----GAC-------AC-CCCCCC-CCCCCCA---CTTTT----TTTTT-TTT--------------AATT---CGGA---T-CTG-GT-AAA-GAC-----ACAC----TT--ATTTTGCTTCTTTCCTACGTTATTAG----T--T-GT-TG--A-AATATG-C-ACT--TAA---AGATa
gi|14 : CCCAC--AG-AC-ACTT-GGG---GGC--ATGG-AT-C-AT----G---------AC-CCACCC-CC---------TTCC----CCCTA-TTTATTATAAAAAAAAAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTTAGTTCTTTTCTACGTTAA-------------T-TG-TA-AGTAAG-C-A-T--TAA---AGATCAT---T--CAGA---AT-Gaccaaga
gi|15 : tgtaCAC--AG-AC-ACCT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----C----------------------AATT---CTGA---T-CTA-GG-ATA-GAC-----AC------TT--GTTTT--T-ATTCTCTACGTTATT------TA-TGTT-TG-CA-AATATG-C-A-T--TAA---AAGTCAT---C--AGAA---AT-GTT
gi|17 : ctttttcatggtgaaagAAAGAAATATAAGTGT-GT---------CTATCCCGAATCAGAATTTTTATTT--TTTAAAA-------A------A--------------------AAA-GG-AGGG--G-G---GT--GT-------CATGATCCAGGCCCCAAGT-GCCTGTGCCCAAAA-CAATAAACGCTAGAAAAAAA---TGT----TG
gi|17 : gCAC--AG-GC-ACTT-GGG---G-C--CTGG-AT-C-AT----G---------ACACCCCCC-TCCTTTT---TTTTTAAAA---------AATA--------AAAATT---CTGA---T-TCG-GG-ATA-GAC-----ACAC----TT--A-TAT--TTCTTTTCtc
gi|18 : gcaacatttttttctagcgtttattgttttgggC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCTTTTT---TTTTT----TT--------------------AAATT---CTGT---T-CTG-GG-ATA-GATG----ACAC-----T--A--TT--TTCTTTTCTACGTTATT-A----TG-T-TC-TG-TA-AATATG-C-A-T--TCAT--TGATCAC---C--CA
gi|19 : C-CCCCCC-TCTTTTT---TTTTT----TTTTT-TTTAT--------------TT---TTG-----------------GAC-----ACAC----TC--ATTTT--TGATT---CATGTTTCTA----------TT-TG-TA-TAAATG---A-T--TAA---AGATCAC---C--CACA---ATGGTTATTTTTCGTCTC-TG-TACCGT-TGT---------TCA----
gi|2 : cGGTGGTAGTTA-----AAAAAAAAATAATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTA----G-CAAGTAGATAATG-G---------------------GGACT-GCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAACAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAAAATCGTGA------A--------TAATAG-TGATAAAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGTTAA-CTT--TT--AAAATACCC-TGATCTAAAAA----TATT-CAGTAT---CCATG-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--GACGTTGAAGCAAAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGC--TTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAG-AATTATAGTATGAATTAGAAAGATCCTT-T-GTATTAATA---CGGTATTAAAAA-TAATTCTTA----------------------------AAAT-AACA--TCATTT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATA-ATATC-AAATAGTTT-ACAC--AAGGTTTAA-G-ATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACATTGTC-GTTCTA-TTCA-TAA-GTTATGGAATAGAAT--TGCTA-TGATTTTTATGA-T-------GGC------AACGAATATTTAAATTCTTCG--TACAATGAGACCA-GTTTTGCTGTCT--ATT-T-TTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATA-TTGCCTCACTGAG-GC-ACTT-GGG---G-C--AAGG-AT-C-AT----G---------AC-CCCCCC-C---TTT---TTTTT----CTTTT-CTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAC----GT--ATTTT--T--CTTTCTACGTTAATAA----TA-T-TT-TGTTA-AATATG-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTA-TTTTCCTCTC-TG-TCACGTAT-T---------TCA----TTGACATTATAAAGGGGCAGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT---TTTCTTACGTTGATTATGTTC-AAGTGTCT--GTGATA-TTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACA-TACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC---AC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTGTAAA-TACATTGTGCCCAAAATTGGAA--ATAAATTACT---TTGTAGTTATGATAAA--TA---ACAAAT-AAACG-TAA---TTATTTT-AAAATACATAATTTA-ATATTACATGTTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGGTTATT-----C-GG-GGTAAAAATAC-GTTCCC--TTGGT---GA-TCTG-CCCAAACT--AGAAAT--GACAACGAATGAGAG-----TC-CTGAGGAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-ATTTT--T-CCATTTCAATGTGTA-TGGTCAG-TGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACC-T-AAT------CAGGGGG--AGATAACAG-CGAC-GGTATCGT-GAGAAAAGTACACCATT
gi|20 : ATA-T-CAGTT-AAACTAA---------CAAATCCATGCATTT-------ATAGCCAGTTTTATTA-TTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATGT-AGATATTTAT-TGtcagtcgttat
gi|21 : ttCCCCC-CCCTTTT---TTTTT----TTTT-------------------AATT---C-------------------GAC-----ACAC----TT--A-TTT--TTCCTTTCTACGTTATTTA----TG-T-TTATT-TG-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-ATg
gi|22 : CGC--AG-GC-ACTT-GGG-----C--ATGG-AT-C-AT----G---------ACACCCCCC-CCCCAAT---T--------ATTTT-TGTATT--------------T---CTGA---T-TTG-GG-ATA-GACCAGAGACAC----AT--AT
gi|24 : TCAC--AG-GC-ACTTTGGGCGTG-C--ATGG-AT-C-AT----G---------AC-CCGCCC-CCTT
gi|3 : aGTTTTCAAGTTAA-TGT-GTTCAGTGTTTAACGTAGGTATTGTATCGTAAAGAAAA-TAAG-GT-GTAGTGGGTTCCTACCCCTGATTAGA------ATT------AGCG-------G------A--------TAA-AG------AGA-GGTGGAGTGG-GCCTGTGTGT-------CATGA-CCTTGCCC-AAGTTGCCTGTG------AGTTAACAA------AGAGAAA---CGTGGTCCGGTAAACTTGTTT--AGAAT-CCCGTGA-ATAAAAAAACGTATTTCAGTATTGACCATTTATGGGTTGGT-CGCTTGA-TT-TGAATCACTATGACGT-GGAAGG-C---------AGAA-TTGGGTTGCTAAGAAATGATTTCAGTTTGCTTC------TTTTTTT--TTTTTTTTGATTGTCAGATTGAA-GATTAGAAGGTGAACAGAG-TTATAGTATGAATAAGAAAGATCCTTGT-GTA-TAGTATGACGGTATTAAAAA-TAATTCTTACTGGAAATGGTGTATCACTGTACCGTGCAAATTCA-AGGTCA-TTGCTT-TTCATTCCAAATGATTGACTGGAATTTCTGCCATCATATATATATTGAAATAGTTTCACACA-A-GGTTTAAAGAATTTTAACATGGTAAAT-TATGCATTTAACTATTGACGAAAAC-TAAGTTGTTTTCACA-TGTTTGTTCTAATTCAATAA-GTTAT-AAATAGGATAATGCTAATGATTTTTATGA-TTCTGCAAGGCGACATTAACGAACATTTAGAAT-TTCGAGTACACTGAGACCGTGTTTTG-AGTTTTAATTATATTTCCAGGAATT-TTTGT---GACACGTG--TGTTTTTGTGTTATTATTTGCC-CAC--AG-GC-AGTT-GGG---G-CCAACGG-ATGC-TT----GC--------GC-CCCCCC-CCCCTTT---TCTTT----CCCTT-T--ATTA--------AAAAAT---CAGA---T-GTG-GGAATAGGAC------CACAATGTTAAATTTT--TTC-TTTCTACGTTAATAA----TATT-TT-TG-T--AATATG-CTA-T--TAA---AAATCATGGGC--TACAGGCAT-GTTAGTTTNNNNNNN-NN-NNNNNNNNNN---------NNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTACCCCTCC-CCCCCCTACCCTGTTGTTTTTCTAAGATTCAAGATCTGAGATAGATTACACTTATTTTTGCTTTTTCTACGTTAAATATG
gi|4 : TTACT-TTTGGTTCCCTAC-TC-CACTA-GCCC--CGCCAT-ACTTCCGCGCA-AGGG--AAATAACCGCc
gi|4 : aatggccaacttctattGGTGGTAGTTATTAAAAAAAAAAAA-AATCACTGATAAT-AAATT-AAA-TAC---------TA------------T--------TCGCCAGTTTTATTAATTTT-------AAACT-A----------CCCCAGATT-AATTTCA-TTAAAAAAacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcggtggtagttattaaaaaaaaaaaaaatcactgataataaattaaatactattcgccagttttattaattttaaactaccccagattaatttcattaaaaaa
gi|5 : aatggccaacttctattgcggttatttcccttgcgcggaagtatggcggggctagtggagtagggaaccaaaagtaaacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcTACCCCAGATTA--------ATTTCATTAAAAA-------A------AACCGTGAATAATAG-TGAT-AAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCA-GT-GCC-GTG--------TTACAAA------AAAAAAAAATTGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAA-----TATT-CAGTAT---CCATT-ATG--TTG-TTC--CTGACTTGTGAA-CA-TA-GACGTTGAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGAATTTCTTTGCTTTTTTTTC--TGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATCGTATGATTTG--AAGATCCTT-TTGTA-TAATAC--CGGTATTAAAAAATAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---TCTAAATTCCAAAT-ATTGAC--GA-TAT-TGC-ATCA-ATATATATC-AA-T-GTTTCACACA-AGGGTTTAA-GAATTA-AACATCGTA--TTGATGCAT---A-TGTTGACGAAAACATAAGTT--TTTACCA-TGTC-GTTCTA-TTCA-TAAAGTTAT-GAATAGAAT--TGCTA-TGA-TTTTATGAGTTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA-T-TT-GTTTGGATAC-TGGTT---TTTGT-TTAATATTTGCCTCACT-AT-G--ACTT-GGG---G-C--AAGG-AT-C-ATTGCCG---------CC-CCCTCC-CCCTTTTTTCTTTCT----CTTTT-CTTATT---------AAAATC---CAGA---T-CTG-GGCATA-GAC-----AC
gi|6 : C-AAGTGTCTTGGTGATATTT-GCCGTGTAGAATTTTGCAAAGTCTAGCTTAATGTACATCGTACGATATTTTTCTT--TCA---TTTGTCAATGGTGTGGTTATCATTGAA--------ACATGAACTTAGTCCTTCTATTGTATAATCACGAATAGTCTG-AAAATACATTGTGCCCAAAATCGGGAATATAAATTACTTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCTAAAAACA-----TATATATT-CAT-TTTGTGGCG--TAT-TAATTCATGGTAGTGGTTCTGTGG-TATTCGAGTC-TGTGGTAAAATTACTGTTCGC--TA-GTTGGGATTCTGTCCCAAACTCGAAAAATGGGACAACGAATG-GAG-----GCGC----GAGAAGTTATGCGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTTTGTTTGGG-T-TGTTT-TTTTT--TTCCATTTCATTTCGTACTGTTCAGACGAGTTCGATCGCCGGTTGGGCCAACATAGCTGAGTTGAGAATTCACACTGAGGCATCGCCATTACTGCTTGGT-CCCTACTTCAAGACAGGCGCCACGCCTG-AAT------CA-GGGGGAAGGTAACAGGCGCCGGGTATCGTAGAGAAAAGTATTCCATTtcgtgaaacagagggatacacaaacaacat
gi|7 : ATA-TGCAATTTAAACTAAGCAAATCCCCA------------TGCAGTCCATGGCCGTTTTCATTATTTTTTGAAGAAAAACTAATTTCCATTCGCCTCTTATTAAATTTAAGTTAATAAATTCGCAAT-TGTACATG-TAATTAGTCAAGAAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCAA-CTGTTTGAACGACATCGCTTGATTGCATGTTTTCAACT--AGTTTGGTTC-GT---TAAGGT----ATTGTATT-TAGAGAAAATAAAGTGTGGG---------CTAGT---GTCTAGA-----TA------TAAAAAAGAC---A------A--------TAATAGTTGAT-AAA-GGTGGTG--GAG---ATG-GCGTTGTGTCATGACCATTTCGCCAAGT-GCTT-TG------A-TTACAAA------AAagagtatacatta
gi|8 : attgtttgaaactctattccacatgggtcattgatgaaattgatgcat-GAT-----ACAC----TT--ATTTT---TCTTTTCTACGTTAATTA----TG-T-TT-TG-TA-AATATG-C-A-T--TAA---AAATCAT---C--CAAA---AT-GTTATTTTTCCTCTT-TG-TCACGTATATCCCAGAAGATCAGAATTTGAAA--AAAAGGGGGGGGGGTCA
gi|8 : TCAC--AG-AC-ACTT-AGG---A-C--AAGA-AT-C-TT----G---------AC-CCCCCC-CCCTTTT---TTTC---------------------------AAATT---CTGATCTT-CTG-GG-ATA-TAC-----agattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|8 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacTGTCCTAAGTGTCT--GTGATATTT-GCC-TGTA--ATGTT-CA--GTCTAGCTTTATGCATAAAGTAC---ATTTTTCTTCA------TTTGTCA-TGGTGTG--TATCATTGAACTTAATCC---------TAA-----CTATTGCACTAT-----ATA--T-----A-TACAtatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|9 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattctT-GTTCGGTGG-TATTC----T-G-TGGTAAAAATAC-GTTCCCATT--GT---GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACG-TTTCCGTTT-GG-TTCG--T-TTTTTAATCCCATTTCAATTTGTACTGGCCAGACGAGTTCGATCGCTGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-GCGCGTCGCCATTACT-CTTGGT-CCCTACTTC-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTCATTGTTTCCCCTCCCAAAAATTTAGCATTTTTTCCAAATCATATCTTTATTTTTCCAATTTCAAAACAAAACAGAGATCACCGTATATAAATTAATTTTGCTGACAAAGAGAAAATACTTTTTTTTTTCATTTCAATTTCATTCTCCAAACCCCTGTACATGCTAAAGATTATGTGATATCAGATGAATGTGTAAAACAATAGAGGTATCCATTTAAGCAGATTTTTAGC
Unaligned ( gi|16 ): CAATGATTTTTTTCGGGCCAATATGCCACCGATAATGGGTGGTTTCCCCTCCCAAAAACTTAGTATTTTTTCCCAATCTGAATCATACATCTATTTTTTTCCCCAATTTCAAAAAAGTTCAGAAAAAGCA
Unaligned ( gi|23 ): AGCACCGTGTGTCATCATCTATACAGCTAGTAAAAACAATTCGTTCC
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 33333 22 77777777777777777777777777777777 2222222 1 1 1 1 444444444444444 1 11 1 1 1111 1 111 1111 1 333333333 111111 111 66666666666666666666666 111111 1 111 2222222 11 22222222 111111 111 1111 1 11 11 1 1 22222 1 111 11 11 111111 1 1 1 1 1 44444444444444 1 555555555555 1 1 111 1 222 1 0000000000000000000000000000 1 1111 1 11111 1 11 1 1 1 11 1 1 1111 11111 1 11 1 1 1 1 1 1 11 1 222222222 222222 1 11 1 11 1 11 1 1 111 111111 11 111111111 55555555555555555555555555 222222222 222222222 1111 888888888888888 11 1 555555555 11 1 1 333 1 11 1 1 11 1 11 111111 1 11 22222222222222222222222222222 22222 222222 1 2222222 1 222 1 1 11 11 1 1 1 2222222222 1 4444444444 1 1 11 11 3333333333333 11 1 1 111 1111 11 11 4444444444444 1 1 11 111 222222 1 11 1 1
lowQualScore : 33333 00 0 8 8 8 55555555555555555555555555555555 6 6666666 8 0 8 0 0 0 7 7 3 222222222222222 3 7 44 3 3 4444 0 3 777 7777 0 6 0 8 222222222 1 999999 222 33333333333333333333333 3 222222 6 3 99 6 111 6 1111111 77 6 6 55555555 999999 444 7777 0 33 33 0 0 3 44444 0 777 99 33 444444 2 0 0 0 0 0 33333333333333 0 111111111111 3 0 2 3 3 3 0 3 3 2 111 0 7 000 0 7777777777777777777777777777 0 4444 0 88888 0 33 3 0 2 0 3 0 3 3 2 33 7 3 0 3 0 4444 88888 0 33 0 0 0 0 0 0 33 0 3 555555555 888888 0 33 0 2 33 0 3 33 3 0 0 777 666666 8 11 00 2 2 2 99999 33 2 2 2 6666 888888888 5 2 444 22222222222222222222222222 444 2 444 2 2 5 2 88888 8888 33 1 88 4 1 111111111 3 3 6 3 3 3 3 44 999 666 55 777 4 3 6 6 0 7 666666666 4444 2 5 0 333333333333333 88 3 333333333 88 3 3 000 0 33 3 5 0 33 0 33 0 2 2 2 666666 0 33 99999999999999999999999999999 0 55555 222222 0 0 7 7 7 7 3333333 3 7 333 2 7 7 7 3 88 7 88 3 0 0 9999999999 3 0 2 5555555555 0 0 77 22 3 1111111111111 33 0 2 0 111 4444 33 6 1 2 3 33 8888888888888 0 2 8 8 0 8 0 33 777 888888 0 33 8 3 3 1
lowQualScore : ..... .. . . . . ................................ . ....... . . . . . . . . . ............... . . .. . . .... . . ... .... . . . . ......... . ...... ... ....................... . ...... . . .. . ... . ....... .. . . ........ ...... ... .... . .. .. . . . ..... . ... .. .. ...... . . . . . . .............. . ............ . . . . . . . . . . ... . . ... . ............................ . .... . ..... . .. . . . . . . . . . .. . . . . . .... ..... . .. . . . . . . .. . . ......... ...... . .. . . .. . . .. . . . ... ...... . .. .. . . . ..... .. . . . .... ......... . . ... .......................... ... . ... . . . . ..... .... .. . .. . . ......... . . . . . . . .. ... ... .. ... . . . . . . ......... .... . . . ............... .. . ......... .. . . ... . .. . . . .. . .. . . . . ...... . .. ............................. . ..... ...... . . . . . . ....... . . ... . . . . . .. . .. . . . .......... . . . .......... . . .. .. . ............. .. . . . ... .... .. . . . . .. ............. . . . . . . . .. ... ...... . .. . . . .
lowQualScore : 33333 77 7 0 0 0 00000000000000000000000000000000 0 0000000 0 8 0 0 0 0 3 3 3 777777777777777 3 3 00 3 3 8888 0 2 555 2222 0 0 8 0 000000000 8 888888 333 77777777777777777777777 2 888888 7 3 22 7 777 7 7777777 22 7 3 00000000 222222 000 0000 0 88 88 0 0 2 55555 0 555 22 88 888888 5 0 0 0 0 0 88888888888888 0 222222222222 2 0 5 2 2 2 0 2 2 5 000 0 0 222 0 8888888888888888888888888888 0 8888 0 55555 0 88 2 0 5 0 2 0 2 2 5 22 0 2 0 2 0 8888 55555 0 88 0 0 0 0 0 0 88 0 2 555555555 888888 0 88 0 5 88 0 2 88 2 0 0 555 000000 0 66 77 9 9 9 00000 99 9 9 9 1111 222222222 3 5 777 44444444444444444444444444 777 8 777 7 7 3 5 88888 9999 99 5 55 2 0 555555555 3 3 7 3 3 3 3 66 222 444 00 000 4 2 7 7 8 0 777777777 2222 2 8 8 333333333333333 33 3 333333333 33 3 3 333 0 88 2 5 0 88 0 88 2 5 5 5 222222 0 88 88888888888888888888888888888 2 00000 000000 0 7 3 3 3 3 7777777 3 3 333 0 3 3 3 3 33 3 33 3 0 0 8888888888 2 0 5 2222222222 0 0 00 55 2 2222222222222 88 0 5 0 000 8888 88 5 0 5 2 88 5555555555555 0 5 0 0 8 0 0 88 888 888888 0 88 8 3 3 0
consensus : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGAT-AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
Reference ( family-1587 ) : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGAT-AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
gi|1 : GATGGTAGTTA-----AAAAAAAA----TCACTGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGACGTACAAGTATGGGGACTTGCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------ACCGTGGA--------TAATAG-TGAT-AAAAGG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAT---TGT----TTGTAA-CCT--TTTAAAAAG-CCC-TGATCTAAAAA----TATT-CAGTAT---CCAT--ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAATGTG------------ATGATTTTAATTGCTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TA-TAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACACAAGG-TTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAAATG-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATTATT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCACTGAG-GC-ACTT--GG---G-C--AAGG-AT-C-A-----G---------AC-CCCCCC-CCTTTTT---TTTTT----CTTTTCTTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAT----GT--ATTTT--TTCTTTTCTACGTTAATAA----TA-T-TT-TG-TA-AATATT-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCAGGATCATG---------------CATGACCC--CCTCCCTTTT---------TTTTTTTA--ATTC-AGATCTGAGATTGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC--AAC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTA-AAA-TACATTGTGCCCAAAATTGGAAATA-AAA----TTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTTAAAAAACATAATTTATATATTACAT-TTTGAGGCGTATATATA--TCAT-ATAGT-GTTCTGTGG-TATTC----CGGGTGGTAAAAA--------------------GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAGTCACTGAGC----GAGAG--TATCGGGACGCAAACAAGAAATTAATTGAAAGGTGAATACGGTTTCCGTTT-GGTT-CG--TGTTTTT--TCCCATTTCAATGTGTACTGGTCTGATGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCG-CATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACCCTGAAT------CA-GGGG--AGATAACAGCTGAC-GGTATCGT-GAGAAAAGTACCCCATT
gi|11 : C--AG-GCGACTT-GGGA--G-C--ATGGGAT-CTAT--------------AC-CCACCCACTCTCTT---TTTTT----CTTAT-TTT--TA--------AAAATTATCCTGA---TTCTG-GG-ATA-GAT-----ACGTA---TT--ATTTT--T-CTTTTCTACG-TACTAACTTTTAGT-TC-TGCTATAATATGCC-A-TTCTAATTGAGATCAT---CTTCACA---A--GTAATGGTCACGCTCTTGTTCATGTATCT---------TTA----TT-ACA
gi|12 : TCAC--AGAGC-ACTT-GGG-----C--ATGG-AT-C-AT----GGACATGACCAC-CCCCCC-CCCTTTT---TTTTT----ATTTT-TT----A--------AAAATT---CTTA---T-CTGAGG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTATTAA----T--T--------------TG-C-A-T--TTA---AGATCAT---C--CAAA---A
gi|13 : taaatgtttcctaatctaggtctacttcacatataggACATGTA--T---TTAAT-TGAATAT--ACCT------G-GC-ACTT-GGG---G-C--ATGG-GT-A-AT----GAC-------AC-CCCCCC-CCCCCCA---CTTTT----TTTTT-TTT--------------AATT---CGGA---T-CTG-GT-AAA-GAC-----ACAC----TT--ATTTTGCTTCTTTCCTACGTTATTAG----T--T-GT-TG--A-AATATG-C-ACT--TAA---AGATa
gi|14 : CCCAC--AG-AC-ACTT-GGG---GGC--ATGG-AT-C-AT----G---------AC-CCACCC-CC---------TTCC----CCCTA-TTTATTATAAAAAAAAAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTTAGTTCTTTTCTACGTTAA-------------T-TG-TA-AGTAAG-C-A-T--TAA---AGATCAT---T--CAGA---AT-Gaccaaga
gi|15 : tgtaCAC--AG-AC-ACCT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----C----------------------AATT---CTGA---T-CTA-GG-ATA-GAC-----AC------TT--GTTTT--T-ATTCTCTACGTTATT------TA-TGTT-TG-CA-AATATG-C-A-T--TAA---AAGTCAT---C--AGAA---AT-GTT
gi|17 : ctttttcatggtgaaagAAAGAAATATAAGTGT-GT---------CTATCCCGAATCAGAATTTTTATTT--TTTAAAA-------A------A--------------------AAA-GG-AGGG--G-G---GT--GT-------CATGATCCAGGCCCCAAGT-GCCTGTGCCCAAAA-CAATAAACGCTAGAAAAAAA---TGT----TG
gi|17 : gCAC--AG-GC-ACTT-GGG---G-C--CTGG-AT-C-AT----G---------ACACCCCCC-TCCTTTT---TTTTTAAAA---------AATA--------AAAATT---CTGA---T-TCG-GG-ATA-GAC-----ACAC----TT--A-TAT--TTCTTTTCtc
gi|18 : gcaacatttttttctagcgtttattgttttgggC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCTTTTT---TTTTT----TT--------------------AAATT---CTGT---T-CTG-GG-ATA-GATG----ACAC-----T--A--TT--TTCTTTTCTACGTTATT-A----TG-T-TC-TG-TA-AATATG-C-A-T--TCAT--TGATCAC---C--CA
gi|19 : C-CCCCCC-TCTTTTT---TTTTT----TTTTT-TTTAT--------------TT---TTG-----------------GAC-----ACAC----TC--ATTTT--TGATT---CATGTTTCTA----------TT-TG-TA-TAAATG---A-T--TAA---AGATCAC---C--CACA---ATGGTTATTTTTCGTCTC-TG-TACCGT-TGT---------TCA----
gi|2 : cGGTGGTAGTTA-----AAAAAAAAATAATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTA----G-CAAGTAGATAATG-G---------------------GGACT-GCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAACAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAAAATCGTGA------A--------TAATAG-TGATAAAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGTTAA-CTT--TT--AAAATACCC-TGATCTAAAAA----TATT-CAGTAT---CCATG-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--GACGTTGAAGCAAAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGC--TTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAG-AATTATAGTATGAATTAGAAAGATCCTT-T-GTATTAATA---CGGTATTAAAAA-TAATTCTTA----------------------------AAAT-AACA--TCATTT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATA-ATATC-AAATAGTTT-ACAC--AAGGTTTAA-G-ATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACATTGTC-GTTCTA-TTCA-TAA-GTTATGGAATAGAAT--TGCTA-TGATTTTTATGA-T-------GGC------AACGAATATTTAAATTCTTCG--TACAATGAGACCA-GTTTTGCTGTCT--ATT-T-TTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATA-TTGCCTCACTGAG-GC-ACTT-GGG---G-C--AAGG-AT-C-AT----G---------AC-CCCCCC-C---TTT---TTTTT----CTTTT-CTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAC----GT--ATTTT--T--CTTTCTACGTTAATAA----TA-T-TT-TGTTA-AATATG-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTA-TTTTCCTCTC-TG-TCACGTAT-T---------TCA----TTGACATTATAAAGGGGCAGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT---TTTCTTACGTTGATTATGTTC-AAGTGTCT--GTGATA-TTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACA-TACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC---AC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTGTAAA-TACATTGTGCCCAAAATTGGAA--ATAAATTACT---TTGTAGTTATGATAAA--TA---ACAAAT-AAACG-TAA---TTATTTT-AAAATACATAATTTA-ATATTACATGTTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGGTTATT-----C-GG-GGTAAAAATAC-GTTCCC--TTGGT---GA-TCTG-CCCAAACT--AGAAAT--GACAACGAATGAGAG-----TC-CTGAGGAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-ATTTT--T-CCATTTCAATGTGTA-TGGTCAG-TGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CACC-T-AAT------CAGGGGG--AGATAACAG-CGAC-GGTATCGT-GAGAAAAGTACACCATT
gi|20 : ATA-T-CAGTT-AAACTAA---------CAAATCCATGCATTT-------ATAGCCAGTTTTATTA-TTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATGT-AGATATTTAT-TGtcagtcgttat
gi|21 : ttCCCCC-CCCTTTT---TTTTT----TTTT-------------------AATT---C-------------------GAC-----ACAC----TT--A-TTT--TTCCTTTCTACGTTATTTA----TG-T-TTATT-TG-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-ATg
gi|22 : CGC--AG-GC-ACTT-GGG-----C--ATGG-AT-C-AT----G---------ACACCCCCC-CCCCAAT---T--------ATTTT-TGTATT--------------T---CTGA---T-TTG-GG-ATA-GACCAGAGACAC----AT--AT
gi|24 : TCAC--AG-GC-ACTTTGGGCGTG-C--ATGG-AT-C-AT----G---------AC-CCGCCC-CCTT
gi|3 : aGTTTTCAAGTTAA-TGT-GTTCAGTGTTTAACGTAGGTATTGTATCGTAAAGAAAA-TAAG-GT-GTAGTGGGTTCCTACCCCTGATTAGA------ATT------AGCG-------G------A--------TAA-AG------AGA-GGTGGAGTGG-GCCTGTGTGT-------CATGA-CCTTGCCC-AAGTTGCCTGTG------AGTTAACAA------AGAGAAA---CGTGGTCCGGTAAACTTGTTT--AGAAT-CCCGTGA-ATAAAAAAACGTATTTCAGTATTGACCATTTATGGGTTGGT-CGCTTGA-TT-TGAATCACTATGACGT-GGAAGG-C---------AGAA-TTGGGTTGCTAAGAAATGATTTCAGTTTGCTTC------TTTTTTT--TTTTTTTTGATTGTCAGATTGAA-GATTAGAAGGTGAACAGAG-TTATAGTATGAATAAGAAAGATCCTTGT-GTA-TAGTATGACGGTATTAAAAA-TAATTCTTACTGGAAATGGTGTATCACTGTACCGTGCAAATTCA-AGGTCA-TTGCTT-TTCATTCCAAATGATTGACTGGAATTTCTGCCATCATATATATATTGAAATAGTTTCACACA-A-GGTTTAAAGAATTTTAACATGGTAAAT-TATGCATTTAACTATTGACGAAAAC-TAAGTTGTTTTCACA-TGTTTGTTCTAATTCAATAA-GTTAT-AAATAGGATAATGCTAATGATTTTTATGA-TTCTGCAAGGCGACATTAACGAACATTTAGAAT-TTCGAGTACACTGAGACCGTGTTTTG-AGTTTTAATTATATTTCCAGGAATT-TTTGT---GACACGTG--TGTTTTTGTGTTATTATTTGCC-CAC--AG-GC-AGTT-GGG---G-CCAACGG-ATGC-TT----GC--------GC-CCCCCC-CCCCTTT---TCTTT----CCCTT-T--ATTA--------AAAAAT---CAGA---T-GTG-GGAATAGGAC------CACAATGTTAAATTTT--TTC-TTTCTACGTTAATAA----TATT-TT-TG-T--AATATG-CTA-T--TAA---AAATCATGGGC--TACAGGCAT-GTTAGTTTNNNNNNN-NN-NNNNNNNNNN---------NNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTACCCCTCC-CCCCCCTACCCTGTTGTTTTTCTAAGATTCAAGATCTGAGATAGATTACACTTATTTTTGCTTTTTCTACGTTAAATATG
gi|4 : TTACT-TTTGGTTCCCTAC-TC-CACTA-GCCC--CGCCAT-ACTTCCGCGCA-AGGG--AAATAACCGCc
gi|4 : aatggccaacttctattGGTGGTAGTTATTAAAAAAAAAAAA-AATCACTGATAAT-AAATT-AAA-TAC---------TA------------T--------TCGCCAGTTTTATTAATTTT-------AAACT-A----------CCCCAGATT-AATTTCA-TTAAAAAAacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcggtggtagttattaaaaaaaaaaaaaatcactgataataaattaaatactattcgccagttttattaattttaaactaccccagattaatttcattaaaaaa
gi|5 : aatggccaacttctattgcggttatttcccttgcgcggaagtatggcggggctagtggagtagggaaccaaaagtaaacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcTACCCCAGATTA--------ATTTCATTAAAAA-------A------AACCGTGAATAATAG-TGAT-AAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCA-GT-GCC-GTG--------TTACAAA------AAAAAAAAATTGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAA-----TATT-CAGTAT---CCATT-ATG--TTG-TTC--CTGACTTGTGAA-CA-TA-GACGTTGAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGAATTTCTTTGCTTTTTTTTC--TGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATCGTATGATTTG--AAGATCCTT-TTGTA-TAATAC--CGGTATTAAAAAATAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---TCTAAATTCCAAAT-ATTGAC--GA-TAT-TGC-ATCA-ATATATATC-AA-T-GTTTCACACA-AGGGTTTAA-GAATTA-AACATCGTA--TTGATGCAT---A-TGTTGACGAAAACATAAGTT--TTTACCA-TGTC-GTTCTA-TTCA-TAAAGTTAT-GAATAGAAT--TGCTA-TGA-TTTTATGAGTTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA-T-TT-GTTTGGATAC-TGGTT---TTTGT-TTAATATTTGCCTCACT-AT-G--ACTT-GGG---G-C--AAGG-AT-C-ATTGCCG---------CC-CCCTCC-CCCTTTTTTCTTTCT----CTTTT-CTTATT---------AAAATC---CAGA---T-CTG-GGCATA-GAC-----AC
gi|6 : C-AAGTGTCTTGGTGATATTT-GCCGTGTAGAATTTTGCAAAGTCTAGCTTAATGTACATCGTACGATATTTTTCTT--TCA---TTTGTCAATGGTGTGGTTATCATTGAA--------ACATGAACTTAGTCCTTCTATTGTATAATCACGAATAGTCTG-AAAATACATTGTGCCCAAAATCGGGAATATAAATTACTTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCTAAAAACA-----TATATATT-CAT-TTTGTGGCG--TAT-TAATTCATGGTAGTGGTTCTGTGG-TATTCGAGTC-TGTGGTAAAATTACTGTTCGC--TA-GTTGGGATTCTGTCCCAAACTCGAAAAATGGGACAACGAATG-GAG-----GCGC----GAGAAGTTATGCGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTTTGTTTGGG-T-TGTTT-TTTTT--TTCCATTTCATTTCGTACTGTTCAGACGAGTTCGATCGCCGGTTGGGCCAACATAGCTGAGTTGAGAATTCACACTGAGGCATCGCCATTACTGCTTGGT-CCCTACTTCAAGACAGGCGCCACGCCTG-AAT------CA-GGGGGAAGGTAACAGGCGCCGGGTATCGTAGAGAAAAGTATTCCATTtcgtgaaacagagggatacacaaacaacat
gi|7 : ATA-TGCAATTTAAACTAAGCAAATCCCCA------------TGCAGTCCATGGCCGTTTTCATTATTTTTTGAAGAAAAACTAATTTCCATTCGCCTCTTATTAAATTTAAGTTAATAAATTCGCAAT-TGTACATG-TAATTAGTCAAGAAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCAA-CTGTTTGAACGACATCGCTTGATTGCATGTTTTCAACT--AGTTTGGTTC-GT---TAAGGT----ATTGTATT-TAGAGAAAATAAAGTGTGGG---------CTAGT---GTCTAGA-----TA------TAAAAAAGAC---A------A--------TAATAGTTGAT-AAA-GGTGGTG--GAG---ATG-GCGTTGTGTCATGACCATTTCGCCAAGT-GCTT-TG------A-TTACAAA------AAagagtatacatta
gi|8 : attgtttgaaactctattccacatgggtcattgatgaaattgatgcat-GAT-----ACAC----TT--ATTTT---TCTTTTCTACGTTAATTA----TG-T-TT-TG-TA-AATATG-C-A-T--TAA---AAATCAT---C--CAAA---AT-GTTATTTTTCCTCTT-TG-TCACGTATATCCCAGAAGATCAGAATTTGAAA--AAAAGGGGGGGGGGTCA
gi|8 : TCAC--AG-AC-ACTT-AGG---A-C--AAGA-AT-C-TT----G---------AC-CCCCCC-CCCTTTT---TTTC---------------------------AAATT---CTGATCTT-CTG-GG-ATA-TAC-----agattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|8 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacTGTCCTAAGTGTCT--GTGATATTT-GCC-TGTA--ATGTT-CA--GTCTAGCTTTATGCATAAAGTAC---ATTTTTCTTCA------TTTGTCA-TGGTGTG--TATCATTGAACTTAATCC---------TAA-----CTATTGCACTAT-----ATA--T-----A-TACAtatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|9 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattctT-GTTCGGTGG-TATTC----T-G-TGGTAAAAATAC-GTTCCCATT--GT---GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACG-TTTCCGTTT-GG-TTCG--T-TTTTTAATCCCATTTCAATTTGTACTGGCCAGACGAGTTCGATCGCTGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-GCGCGTCGCCATTACT-CTTGGT-CCCTACTTC-C
blockSeqs : TTAAA AT A G T GCAAATCCCCATGCAGTCCA A TGAAGAA A A G A A T A T TGAATAGCGAC . T GA C T TAA G A GTT AGGT G A G AGTGGGTTC G ATTTTT TCA AAACCGTGAA T TGATA . T TG A CCT T GTTGTGT AT T T CCCAAAA CGCTAG AAT GGTC A GT . A G T AAACG T TGA TT GG GTCGC C G T C T T GACGTTGAAGCA . GGTTGCTAAGAA A A G T A A A A A G GT T A TGA A CTGGAAATGGTGTATCACTGTACCGTGC T AGG T GCTT G TG A C C T T G A A C A A T A A T AAT TTAAC A GT T T A A A G AA A T TTCTGCAA GACATT C AG T C TA A A CA T . T TTG TGTT G TT TG A G T CGTG CA G G T TGCC GACATGACC A A TTC CCCTATTTATTATAAAAAAAA ATC T TCT T A A G CAGAG AATG AA T GC T C AACTTTTAG G A C T C T C TC TTG GGG TT GGC G T T T C CCCAGAAGA GAAT G T NNNNNNNNNNNNNAT CT . ACCCTGTTG AG A T GCT T TG T T G GA G AA G G C TTAAAT A GT TGAAACATGAACTTAGTCCTT CACGA GTCTG A A T T T GTTATAT G T ATT C T T A G . A AT G G T CGAGTCTGT T T C TAGTTGG T T CG GG A TCCTGAG GT . G G TT TTT AA T G C A GG AGCTGAGTTGAGA G C G T A G CA AT TCCGCG G GA C G A A
blockSeqs : . A . . . CAAATCCATGCATTTA A . . . . . . . . . G . . A . . AG . A . AC . A . . A T T AATCGTGAA T TTGAT . T . . . . . AC . C AG . . . . . . . . T A . . G . TTC C . . . . . AGGC . . A . G T A A . A A G TT . G C . TT . CA . TC . . A . C . T . A A C A G T . A . TT A . . . . . . . . . . T GTTC . . . . C . . A . T . . . GTT . TT T . . . AG . . . . . AC A . . CTTTTCTTATTAA . T . . . C . G A . T AG T T AATAT . . T . . . . . T . . . . T . . G . . N N . . . . . . . . . . T . . . . . G G C TCA . . TGAACTTAATCCTAA . TTGT . . T T . TA . . . . . . . . . . . . . . CTGT T . G TTGGT . . A G A GCGC . . G . T T . C T C A . AGCTGAGTTGAGA . C . . . . . TG . . . G . . T
blockSeqs : . . . CATA T . . . . . . A . . . . . T . . T T T AGACAA T TGAT . . . . . . . T . T A . . . . . . . . . . . . T . TC . . . . . . GC . . . . . . . . . . . . T . A . . . . A . T . . . . . . . . . . . . . T . . . T A . . . . . . . . . . . T . . . . . . . . . . . . . T . T . . . . GG . . . . . C . . . CTTTTCTTATTA . G . . . . . . . . T . T T AATA . . . . . . . . . . . . . G . . N . . G . . . . . . . . . . . . . . . ACATCTACATGTAA . T . . . CGG T . C ATTGT . . . . . GCGC . . . . T T . . T . . . . . C . . . . . T . . . .
blockSeqs : . . . TAT . . . . . . . A . . AA . . . . . . . . . A . T A . . . T . T . . . . G . . . . . . . . . CTTATTTTTAA . T . . . . . . . . T . T A TATG . . . . . . . . . . . . . T . . A . . . . . .
blockSeqs : . . . GA . . . . . . . . . T . . . . . . . . G . . . . . . . . . ATTTTTGTATT . T . . . . . . . . T . T T TATG . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . CCCTTTATTAA . T . . . . . . . . T . G T AAT . . . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . TTTTTTTTAT . T . . . . . . . . T . T C AGT . . . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . ATTTTTTAA . T . . . . . . . . T . T A ATG . . . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . AAAAAATAA . A . . . . . . . . T . T T TA . . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . TTTTTTTT . T . . . . . . . . T . . A A . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . TTTT . A . . . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . TT . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : CATA**************************** T***** AGCAA****************** TGAT** ** CTTTTTTTATTAA************* AATG*****
originalCons : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TATTT--TTAAAAA-------A------A--------TAATAG-TGAT-AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAA----TA-T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
finalCons : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAACATA----------------------------TAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGAT-----ATTT--TTAAAAAAGCAA------------------TAATAGTGAT--AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTTCTTTTTTTATTAA-------------AAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAATG-----T-TT-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGGT-CCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTCATTGTTTCCCCTCCCAAAAATTTAGCATTTTTTCCAAATCATATCTTTATTTTTCCAATTTCAAAACAAAACAGAGATCACCGTATATAAATTAATTTTGCTGACAAAGAGAAAATACTTTTTTTTTTCATTTCAATTTCATTCTCCAAACCCCTGTACATGCTAAAGATTATGTGATATCAGATGAATGTGTAAAACAATAGAGGTATCCATTTAAGCAGATTTTTAGC
Unaligned ( gi|16 ): CAATGATTTTTTTCGGGCCAATATGCCACCGATAATGGGTGGTTTCCCCTCCCAAAAACTTAGTATTTTTTCCCAATCTGAATCATACATCTATTTTTTTCCCCAATTTCAAAAAAGTTCAGAAAAAGCA
Unaligned ( gi|23 ): AGCACCGTGTGTCATCATCTATACAGCTAGTAAAAACAATTCGTTCC
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 33333 22 77777777777777777777777777777777 2222222 1 1 1 1 444444444444444 1 11 1 1 1111 1 111 1111 1 333333333 2222222222222 666666666666 111111 1 111 2222222 11 22222222 111111 111 1111 1 11 11 1 1 22222 1 111 11 11 111111 1 1 1 1 1 44444444444444 1 555555555555 1 1 111 1 222 1 0000000000000000000000000000 1 1111 1 11111 1 11 1 1 1 11 1 1 1111 11111 1 11 1 1 1 1 1 1 11 1 222222222 222222 1 11 1 11 1 11 1 1 111 111111 11 111111111 55555555555555555555555555 1111111111 222222222 1111 888888888888888 11 1 555555555 11 1 1 333 1 11 1 1 11 1 11 111111 1 11 22222222222222222222222222222 22222 222222 1 2222222 1 222 1 1 11 11 1 1 1 2222222222 1 4444444444 1 1 11 11 3333333333333 11 1 1 111 1111 11 11 4444444444444 1 1 11 111 222222 1 11 1 1
lowQualScore : 33333 00 0 8 8 8 55555555555555555555555555555555 6 6666666 8 0 8 0 0 0 7 7 3 222222222222222 3 7 44 3 3 4444 0 3 777 7777 0 6 0 8 222222222 1 4444444444444 444444444444 3 222222 6 3 99 6 111 6 1111111 77 6 6 55555555 999999 444 7777 0 33 33 0 0 3 44444 0 777 99 33 444444 2 0 0 0 0 0 33333333333333 0 111111111111 3 0 2 3 3 3 0 3 3 2 111 0 7 000 0 7777777777777777777777777777 0 4444 0 88888 0 33 3 0 2 0 3 0 3 3 2 33 7 3 0 3 0 4444 88888 0 33 0 0 0 0 0 0 33 0 3 555555555 888888 0 33 0 2 33 0 3 33 3 0 0 777 666666 8 11 00 2 2 2 99999 33 2 2 2 6666 888888888 5 2 444 22222222222222222222222222 444 2 444 2 2 5 2 88888 8888 33 1 88 4 1 7777777777 3 3 6 3 3 3 3 44 999 666 55 777 4 3 6 6 0 7 666666666 4444 2 5 0 333333333333333 88 3 333333333 88 3 3 000 0 33 3 5 0 33 0 33 0 2 2 2 666666 0 33 99999999999999999999999999999 0 55555 222222 0 0 7 7 7 7 3333333 3 7 333 2 7 7 7 3 88 7 88 3 0 0 9999999999 3 0 2 5555555555 0 0 77 22 3 1111111111111 33 0 2 0 111 4444 33 6 1 2 3 33 8888888888888 0 2 8 8 0 8 0 33 777 888888 0 33 8 3 3 1
lowQualScore : ..... .. . . . . ................................ . ....... . . . . . . . . . ............... . . .. . . .... . . ... .... . . . . ......... . ............. ............ . ...... . . .. . ... . ....... .. . . ........ ...... ... .... . .. .. . . . ..... . ... .. .. ...... . . . . . . .............. . ............ . . . . . . . . . . ... . . ... . ............................ . .... . ..... . .. . . . . . . . . . .. . . . . . .... ..... . .. . . . . . . .. . . ......... ...... . .. . . .. . . .. . . . ... ...... . .. .. . . . ..... .. . . . .... ......... . . ... .......................... ... . ... . . . . ..... .... .. . .. . . .......... . . . . . . . .. ... ... .. ... . . . . . . ......... .... . . . ............... .. . ......... .. . . ... . .. . . . .. . .. . . . . ...... . .. ............................. . ..... ...... . . . . . . ....... . . ... . . . . . .. . .. . . . .......... . . . .......... . . .. .. . ............. .. . . . ... .... .. . . . . .. ............. . . . . . . . .. ... ...... . .. . . . .
lowQualScore : 33333 77 7 0 0 0 00000000000000000000000000000000 0 0000000 0 8 0 0 0 0 3 3 3 777777777777777 3 3 00 3 3 8888 0 2 555 2222 0 0 8 0 000000000 8 0000000000000 777777777777 2 888888 7 3 22 7 777 7 7777777 22 7 3 00000000 222222 000 0000 0 88 88 0 0 2 55555 0 555 22 88 888888 5 0 0 0 0 0 88888888888888 0 222222222222 2 0 5 2 2 2 0 2 2 5 000 0 0 222 0 8888888888888888888888888888 0 8888 0 55555 0 88 2 0 5 0 2 0 2 2 5 22 0 2 0 2 0 8888 55555 0 88 0 0 0 0 0 0 88 0 2 555555555 888888 0 88 0 5 88 0 2 88 2 0 0 555 000000 0 66 77 9 9 9 00000 99 9 9 9 1111 222222222 3 5 777 44444444444444444444444444 777 8 777 7 7 3 5 88888 9999 99 5 55 2 0 0000000000 3 3 7 3 3 3 3 66 222 444 00 000 4 2 7 7 8 0 777777777 2222 2 8 8 333333333333333 33 3 333333333 33 3 3 333 0 88 2 5 0 88 0 88 2 5 5 5 222222 0 88 88888888888888888888888888888 2 00000 000000 0 7 3 3 3 3 7777777 3 3 333 0 3 3 3 3 33 3 33 3 0 0 8888888888 2 0 5 2222222222 0 0 00 55 2 2222222222222 88 0 5 0 000 8888 88 5 0 5 2 88 5555555555555 0 5 0 0 8 0 0 88 888 888888 0 88 8 3 3 0
consensus : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TA-TTT--TTAAAAAAG--C----G---ATAATAG-TGAT-AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAAT-----G-TT-T-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGG-TCCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
Reference ( family-1587 ) : GGTGGTAGTTA-----AAAAAAAAA-AATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGAC----AAGTATGGGGACT-GCCATCTGTTGAGACG-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TA-TTT--TTAAAAAAG--C----A---ATAATAG-TGAT-AAA-GG-GGAG--G-G---GTG-GC-------CGTGATCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAAA----TATT-CAGTAT---CCATT-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TAATAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACA-AAGGTTTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCAC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----CTTTT-TTTATTA--------AAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTANTAAT-----G-TT-T-TG-TA-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCGGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCACTGAAC---ATCTACATG----TAA-----CTATTGCATGAT-----ATA--TTG-AAA-TACATTGTGCCCAAAATCGGAAATATAAATTACTTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTCAAAAAACATAATTTATATATTACAT-TTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGG-TATTC----C-GGTGGTAAAAATAC-GTTCCC--T--GT---GA-TCTG-CCCAAACT-AAGAAAT-GGACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-TTTTT--TCCCATTTCAATNTGTACTGGTCAGACGAGTCCGATCGCCGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-ACGCGTCGCCATTACT-CTTGG-TCCCTACTTC-CGACA-GCGC--CGCCNT-AAT------CA-GGGG--AGATAACAGCCGAC-GGTATCGT-GAGAAAAGTACNCCATT
gi|1 : GATGGTAGTTA-----AAAAAAAA----TCACTGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTAATTAG-CAAGTAGATAATG-GAA-AGCGACGTACAAGTATGGGGACTTGCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAATAAGTGT-GT---------CTACCCCAGATTAGA-----TA-TTT--TTAAAAAAC--C----GTGGATAATAG-TGAT-AAAAGG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAT---TGT----TTGTAA-CCT--TTTAAAAAG-CCC-TGATCTAAAAA----TATT-CAGTAT---CCAT--ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--G-C---------AAAATGTG------------ATGATTTTAATTGCTTGCAATGA-TTTCTTTGCTTTTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATAGTATGAATTAGAAAGATCCTT-T-GTA-TA-TAC--CGGTATTAAAAA-TAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATATATATC-AAATAGTTTCACACACAAGG-TTAA-GAATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACA-TGTC-GTTCTA-TTCA-TAA-GTTAT-GAATAGAAT--TGCTA-TGATTTTTATGA-TTC-----GGC------AACGAATATTTAAATG-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAATTATT-GT---GATACGTG--T---TTTGT-TTAATATTTGCCTCACTGAG-GC-ACTT--GG---G-C--AAGG-AT-C-A-----G---------AC-CCCCCC-CCTTTTT---TTTTT----CTTTTCTTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAT----GT--ATTTT--TTCTTTTCTACGTTAATAAT-----A-TT-T-TG-TA-AATATT-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTATTTTTCCTCTC-TG-TCACGTATGT---------TCA----TTGACATTATAAGGGGGCAGGATCATG---------------CATGACCC--CCTCCCTTTT---------TTTTTTTA--ATTC-AGATCTGAGATTGA-TGCACTTATTTTT--CTTTTCTACGTTGATTATGTTC-AAGTGTCT--GTGATATTTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACAGTACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC--AAC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTA-AAA-TACATTGTGCCCAAAATTGGAAATA-AAA----TTACTTGTAGTTATGATAAA--TA---ACAAAT-AAACGTTAA---TTATTTTTAAAAAACATAATTTATATATTACAT-TTTGAGGCGTATATATA--TCAT-ATAGT-GTTCTGTGG-TATTC----CGGGTGGTAAAAA--------------------GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAGTCACTGAGC----GAGAG--TATCGGGACGCAAACAAGAAATTAATTGAAAGGTGAATACGGTTTCCGTTT-GGTT-CG--TGTTTTT--TCCCATTTCAATGTGTACTGGTCTGATGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCG-CATTACT-CTTGG-TCCCTACTTC-CGACA-GCGC--CACCCTGAAT------CA-GGGG--AGATAACAGCTGAC-GGTATCGT-GAGAAAAGTACCCCATT
gi|11 : C--AG-GCGACTT-GGGA--G-C--ATGGGAT-CTAT--------------AC-CCACCCACTCTCTT---TTTTT----CTTAT-TTT--TA--------AAAATTATCCTGA---TTCTG-GG-ATA-GAT-----ACGTA---TT--ATTTT--T-CTTTTCTACG-TACTAACTTTTAG-TT-C-TGCTATAATATGCC-A-TTCTAATTGAGATCAT---CTTCACA---A--GTAATGGTCACGCTCTTGTTCATGTATCT---------TTA----TT-ACA
gi|12 : TCAC--AGAGC-ACTT-GGG-----C--ATGG-AT-C-AT----GGACATGACCAC-CCCCCC-CCCTTTT---TTTTT----ATTTT-TT----A--------AAAATT---CTTA---T-CTGAGG-ATA-GAC-----ACAC----TT--ATTTT--TTCTTTTCTACGTTATTAAT-------T--------------TG-C-A-T--TTA---AGATCAT---C--CAAA---A
gi|13 : taaatgtttcctaatctaggtctacttcacatataggACATGTA--T---TTAAT-TGAATAT--ACCT------G-GC-ACTT-GGG---G-C--ATGG-GT-A-AT----GAC-------AC-CCCCCC-CCCCCCA---CTTTT----TTTTT-TTT--------------AATT---CGGA---T-CTG-GT-AAA-GAC-----ACAC----TT--ATTTTGCTTCTTTCCTACGTTATTA-------G-TTGT-TG--A-AATATG-C-ACT--TAA---AGATa
gi|14 : CCCAC--AG-AC-ACTT-GGG---GGC--ATGG-AT-C-AT----G---------AC-CCACCC-CC---------TTCC----CCCTA-TTTATTATAAAAAAAAAAATT---CTGA---T-CTG-GG-ATA-GAC-----ACAC----TT--ATTTTAGTTCTTTTCTACGTTAA--------------T-TG-TA-AGTAAG-C-A-T--TAA---AGATCAT---T--CAGA---AT-Gaccaaga
gi|15 : tgtaCAC--AG-AC-ACCT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCCTTTT---TTTTT----C----------------------AATT---CTGA---T-CTA-GG-ATA-GAC-----AC------TT--GTTTT--T-ATTCTCTACGTTATTTAT-----G-TT-T--G-CA-AATATG-C-A-T--TAA---AAGTCAT---C--AGAA---AT-GTT
gi|17 : ctttttcatggtgaaagAAAGAAATATAAGTGT-GT---------CTATCCCGAATCAGAATTTTTATTTT--TTAAAAAA-------------------------AAA-GG-AGGG--G-G---GT--GT-------CATGATCCAGGCCCCAAGT-GCCTGTGCCCAAAA-CAATAAACGCTAGAAAAAAA---TGT----TG
gi|17 : gCAC--AG-GC-ACTT-GGG---G-C--CTGG-AT-C-AT----G---------ACACCCCCC-TCCTTTT---TTTTTAAAA---------AATA--------AAAATT---CTGA---T-TCG-GG-ATA-GAC-----ACAC----TT--A-TAT--TTCTTTTCtc
gi|18 : gcaacatttttttctagcgtttattgttttgggC--AG-GC-ACTT-GGG---G-C--ATGG-AT-C-AT----G---------AC-CCCCCC-CCTTTTT---TTTTT----TT--------------------AAATT---CTGT---T-CTG-GG-ATA-GATG----ACAC-----T--A--TT--TTCTTTTCTACGTTATT-AT-----G-TT-C-TG-TA-AATATG-C-A-T--TCAT--TGATCAC---C--CA
gi|19 : C-CCCCCC-TCTTTTT---TTTTT----TTTTT-TTTAT--------------TT---TTG-----------------GAC-----ACAC----TC--ATTTT--TGATT---CATGTTTCTA----------T-T-TG-TA-TAAATG---A-T--TAA---AGATCAC---C--CACA---ATGGTTATTTTTCGTCTC-TG-TACCGT-TGT---------TCA----
gi|2 : cGGTGGTAGTTA-----AAAAAAAAATAATCACCGATA-T-CAATT-AAACTAA---------CA------------T-------ATAGCCAGTTTTATTAATTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATTC-CGAT-CTCAT-TGTTA----G-CAAGTAGATAATG-G---------------------GGACT-GCCATCTGTTGAGACA-CATCG-TTGA-TGAATGTTTTCAACT--A-TTT-GTTCAGT---TAACGTA--CATTGTATC-TAAAGAAAAACAAGTGT-GT---------CTACCCCAGATTAGA-----TA-TTT--TTAAAAAAA--TCGTGA---ATAATAG-TGATAAAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCAAGT-GCCCGTG------A-TTACAAA------AAAAAAA---TGT----TGTTAA-CTT--TT--AAAATACCC-TGATCTAAAAA----TATT-CAGTAT---CCATG-ATG--TTG-T-C--CTGACTT-TGAA-CA-TA-GACGT-GAA--GACGTTGAAGCAAAAA-GTG------------ATGATTTTAATTGGTTGCAATGA-TTTCTTTGC--TTTTTTCATTGTCCGATTGAAAGATTAGAAGGTGA-CAG-AATTATAGTATGAATTAGAAAGATCCTT-T-GTATTAATA---CGGTATTAAAAA-TAATTCTTA----------------------------AAAT-AACA--TCATTT---T-TAAATTCCAAAT-ATTGAC--GAATTT-TGCCATCA-ATA-ATATC-AAATAGTTT-ACAC--AAGGTTTAA-G-ATTA-AACATCGTA--T-GATGCAT---A-TATTGACGAAAAC-TAAGTT--TTTCACATTGTC-GTTCTA-TTCA-TAA-GTTATGGAATAGAAT--TGCTA-TGATTTTTATGA-T-------GGC------AACGAATATTTAAATTCTTCG--TACAATGAGACCA-GTTTTGCTGTCT--ATT-T-TTTC--AGAATT-TT-GT---GATACGTG--T---TTTGT-TTAATA-TTGCCTCACTGAG-GC-ACTT-GGG---G-C--AAGG-AT-C-AT----G---------AC-CCCCCC-C---TTT---TTTTT----CTTTT-CTTATTA--------AAAATT---CAGA---T-CTG-GG-ATA-GAC-----ACAC----GT--ATTTT--T--CTTTCTACGTTAATAAT-----A-TT-T-TGTTA-AATATG-C-A-T--TAA---AAATCAT---C--CAAC---AT-GTTA-TTTTCCTCTC-TG-TCACGTAT-T---------TCA----TTGACATTATAAAGGGGCAGGATCATG---------------CATGACCC--CC-CCCCCTT---------TTTTTTTA--ATTC-AGATCTGAGATAGA-TGCACTTATTTTT---TTTCTTACGTTGATTATGTTC-AAGTGTCT--GTGATA-TTTGCC-TGTA--ATTTT-CA--GTCCAGCTTTATGCACACA-TACGATATTTTTCTTCATTAAATTTTGTCA-TGGTGTG--CATCAC---AC---ATCTACATG----TAA-----CTATTACATGAT-----ATA--TTGTAAA-TACATTGTGCCCAAAATTGGAA--ATAAATTACT---TTGTAGTTATGATAAA--TA---ACAAAT-AAACG-TAA---TTATTTT-AAAATACATAATTTA-ATATTACATGTTTGAGGCG--TATATA--TCAT-GTAGT-GTTCTGTGGTTATT-----C-GG-GGTAAAAATAC-GTTCCC--TTGGT---GA-TCTG-CCCAAACT--AGAAAT--GACAACGAATGAGAG-----TC-CTGAGGAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTCCGTTT-GG-T-CG--T-ATTTT--T-CCATTTCAATGTGTA-TGGTCAG-TGAGTCCGATCGCCGGTT--GCCAGTAC-------------ATTCACACT-ACGCGTCGCCATTACT-CTTGG-TCCCTACTTC-CGACA-GCGC--CACC-T-AAT------CAGGGGG--AGATAACAG-CGAC-GGTATCGT-GAGAAAAGTACACCATT
gi|20 : ATA-T-CAGTT-AAACTAA---------CAAATCCATGCATTT-------ATAGCCAGTTTTATTA-TTTT-------AAACT-ATTTCCATTCGCCTCTTATT-AATTTCAGTTAATAAATGT-AGATATTTAT-TGtcagtcgttat
gi|21 : ttCCCCC-CCCTTTT---TTTTT----TTTT-------------------AATT---C-------------------GAC-----ACAC----TT--A-TTT--TTCCTTTCTACGTTATTTAT-----G-TT-TATT-TG-AATATG-C-A-T--TAA---AGATCAT---C--CAAA---AT-ATg
gi|22 : CGC--AG-GC-ACTT-GGG-----C--ATGG-AT-C-AT----G---------ACACCCCCC-CCCCAAT---T--------ATTTT-TGTATT--------------T---CTGA---T-TTG-GG-ATA-GACCAGAGACAC----AT--AT
gi|24 : TCAC--AG-GC-ACTTTGGGCGTG-C--ATGG-AT-C-AT----G---------AC-CCGCCC-CCTT
gi|3 : aGTTTTCAAGTTAA-TGT-GTTCAGTGTTTAACGTAGGTATTGTATCGTAAAGAAAA-TAAG-GT-GTAGTGGGTTCCTACCCCTGATTAGA------A-TT----------AG--C----GG--ATAA-AG------AGA-GGTGGAGTGG-GCCTGTGTGT-------CATGA-CCTTGCCC-AAGTTGCCTGTG------AGTTAACAA------AGAGAAA---CGTGGTCCGGTAAACTTGTTT--AGAAT-CCCGTGA-ATAAAAAAACGTATTTCAGTATTGACCATTTATGGGTTGGT-CGCTTGA-TT-TGAATCACTATGACGT-GGAAGG-C---------AGAA-TTGGGTTGCTAAGAAATGATTTCAGTTTGCTTC------TTTTTTT--TTTTTTTTGATTGTCAGATTGAA-GATTAGAAGGTGAACAGAG-TTATAGTATGAATAAGAAAGATCCTTGT-GTA-TAGTATGACGGTATTAAAAA-TAATTCTTACTGGAAATGGTGTATCACTGTACCGTGCAAATTCA-AGGTCA-TTGCTT-TTCATTCCAAATGATTGACTGGAATTTCTGCCATCATATATATATTGAAATAGTTTCACACA-A-GGTTTAAAGAATTTTAACATGGTAAAT-TATGCATTTAACTATTGACGAAAAC-TAAGTTGTTTTCACA-TGTTTGTTCTAATTCAATAA-GTTAT-AAATAGGATAATGCTAATGATTTTTATGA-TTCTGCAAGGCGACATTAACGAACATTTAGAAT-TTCGAGTACACTGAGACCGTGTTTTG-AGTTTTAATTATATTTCCAGGAATT-TTTGT---GACACGTG--TGTTTTTGTGTTATTATTTGCC-CAC--AG-GC-AGTT-GGG---G-CCAACGG-ATGC-TT----GC--------GC-CCCCCC-CCCCTTT---TCTTT----CCCTT-T--ATTA--------AAAAAT---CAGA---T-GTG-GGAATAGGAC------CACAATGTTAAATTTT--TTC-TTTCTACGTTAATAAT-----ATTT-T-TG-T--AATATG-CTA-T--TAA---AAATCATGGGC--TACAGGCAT-GTTAGTTTNNNNNNN-NN-NNNNNNNNNN---------NNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTACCCCTCC-CCCCCCTACCCTGTTGTTTTTCTAAGATTCAAGATCTGAGATAGATTACACTTATTTTTGCTTTTTCTACGTTAAATATG
gi|4 : TTACT-TTTGGTTCCCTAC-TC-CACTA-GCCC--CGCCAT-ACTTCCGCGCA-AGGG--AAATAACCGCc
gi|4 : aatggccaacttctattGGTGGTAGTTATTAAAAAAAAAAAA-AATCACTGATAAT-AAATT-AAA-TAC---------TA------------T--------TCGCCAGTTTTATTAATTTT-------AAACT-A----------CCCCAGATT-AATTTCA-TTAAAAAAacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcggtggtagttattaaaaaaaaaaaaaatcactgataataaattaaatactattcgccagttttattaattttaaactaccccagattaatttcattaaaaaa
gi|5 : aatggccaacttctattgcggttatttcccttgcgcggaagtatggcggggctagtggagtagggaaccaaaagtaaacacgccattaatacacatgtccgattttgctgacttcttttcgaaaaacatgctttcttgtgggtgttgtgtgctctggttgtacaacagaggtggacatcgtttccggaaaacgattgatacgattcgacgtcgttggataatgcccaaaaagagacgagaagccaggaaagttgtggtgccctctccaaatgtgttgtttacaactgtaaaacccggtgcgtcttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtaaataataaaaaaataaaacacaaaaagaaactgatataggaatagttactgggaaggggggggggggggggttattgcgggtttgagactcttattccacatgggtaattgataattatgcatttttctcgggccaaagccaccgaatgggtggtttcccctttctctcaaaattgggtattttttccaatcatactttctatttttaccaatttcaaatgcagaagaaattttgaacacaaagttacctatatataaattaatttttctgacgaagagacaatacgggggtttttttttctcccagttttattctccaaaccatgcacactgcaagacgcgttttgtgatgatagggtataattacaactggaggtacatcgattatttatacatttttttatacatatctaatgcactacaaatgatttttccgaatttgaggaaaccagtgtcgctaattttcaattcaaaagggagcTACCCCAGATTA--------A-TTTCATTAAAAAAAACCGTG-A---ATAATAG-TGAT-AAA-GG-GGAA--G-G---GTG-GC-------CGTG-TCCTTGCCCCA-GT-GCC-GTG--------TTACAAA------AAAAAAAAATTGT----TGGTAA-CTT--TT--AAAAT-CCC-TGATCTAAAA-----TATT-CAGTAT---CCATT-ATG--TTG-TTC--CTGACTTGTGAA-CA-TA-GACGTTGAA--G-C---------AAAA-GTG------------ATGATTTTAATTGGTTGCAATGAATTTCTTTGCTTTTTTTTC--TGTCCGATTGAAAGATTAGAAGGTGA-CAGAAATTATCGTATGATTTG--AAGATCCTT-TTGTA-TAATAC--CGGTATTAAAAAATAATTCTTATT--------------------------AAAT-CA-A--TCA-TT---TCTAAATTCCAAAT-ATTGAC--GA-TAT-TGC-ATCA-ATATATATC-AA-T-GTTTCACACA-AGGGTTTAA-GAATTA-AACATCGTA--TTGATGCAT---A-TGTTGACGAAAACATAAGTT--TTTACCA-TGTC-GTTCTA-TTCA-TAAAGTTAT-GAATAGAAT--TGCTA-TGA-TTTTATGAGTTC-----GGC------AACGAATATTTAGATT-TTCG--TACAATGAGACCA-GTTTTGCAGTCT--ATT-TATTTC--AGAA-T-TT-GTTTGGATAC-TGGTT---TTTGT-TTAATATTTGCCTCACT-AT-G--ACTT-GGG---G-C--AAGG-AT-C-ATTGCCG---------CC-CCCTCC-CCCTTTTTTCTTTCT----CTTTT-CTTATT---------AAAATC---CAGA---T-CTG-GGCATA-GAC-----AC
gi|6 : C-AAGTGTCTTGGTGATATTT-GCCGTGTAGAATTTTGCAAAGTCTAGCTTAATGTACATCGTACGATATTTTTCTT--TCA---TTTGTCAATGGTGTGGTTATCATTGAA--------ACATGAACTTAGTCCTTCTATTGTATAATCACGAATAGTCTG-AAAATACATTGTGCCCAAAATCGGGAATATAAATTACTTACTTGTAGTTATGATAGAGTTATATACAAATGAAACGTTAAATTTTATTTTCTAAAAACA-----TATATATT-CAT-TTTGTGGCG--TAT-TAATTCATGGTAGTGGTTCTGTGG-TATTCGAGTC-TGTGGTAAAATTACTGTTCGC--TA-GTTGGGATTCTGTCCCAAACTCGAAAAATGGGACAACGAATG-GAG-----GCGC----GAGAAGTTATGCGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACGGTTTTTGTTTGGG-T-TGTTT-TTTTT--TTCCATTTCATTTCGTACTGTTCAGACGAGTTCGATCGCCGGTTGGGCCAACATAGCTGAGTTGAGAATTCACACTGAGGCATCGCCATTACTGCTTGG-TCCCTACTTCAAGACAGGCGCCACGCCTG-AAT------CA-GGGGGAAGGTAACAGGCGCCGGGTATCGTAGAGAAAAGTATTCCATTtcgtgaaacagagggatacacaaacaacat
gi|7 : ATA-TGCAATTTAAACTAAGCAAATCCCCA------------TGCAGTCCATGGCCGTTTTCATTATTTTTTGAAGAAAAACTAATTTCCATTCGCCTCTTATTAAATTTAAGTTAATAAATTCGCAAT-TGTACATG-TAATTAGTCAAGAAGATAATGTGAATAGCGAC----AAGTATGGGGACT-GCAA-CTGTTTGAACGACATCGCTTGATTGCATGTTTTCAACT--AGTTTGGTTC-GT---TAAGGT----ATTGTATT-TAGAGAAAATAAAGTGTGGG---------CTAGT---GTCTAGA-----TA-------TAAAAAAGA-C----A---ATAATAGTTGAT-AAA-GGTGGTG--GAG---ATG-GCGTTGTGTCATGACCATTTCGCCAAGT-GCTT-TG------A-TTACAAA------AAagagtatacatta
gi|8 : attgtttgaaactctattccacatgggtcattgatgaaattgatgcat-GAT-----ACAC----TT--ATTTT---TCTTTTCTACGTTAATTAT-----G-TT-T-TG-TA-AATATG-C-A-T--TAA---AAATCAT---C--CAAA---AT-GTTATTTTTCCTCTT-TG-TCACGTATATCCCAGAAGATCAGAATTTGAAA--AAAAGGGGGGGGGGTCA
gi|8 : TCAC--AG-AC-ACTT-AGG---A-C--AAGA-AT-C-TT----G---------AC-CCCCCC-CCCTTTT---TTTC---------------------------AAATT---CTGATCTT-CTG-GG-ATA-TAC-----agattcttgtcctaagtgtctgtgatatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|8 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacTGTCCTAAGTGTCT--GTGATATTT-GCC-TGTA--ATGTT-CA--GTCTAGCTTTATGCATAAAGTAC---ATTTTTCTTCA------TTTGTCA-TGGTGTG--TATCATTGAACTTAATCC---------TAA-----CTATTGCACTAT-----ATA--T-----A-TACAtatttgcctgtaatgttcagtctagctttatgcataaagtacatttttcttcatttgtcatggtgtgtatcattgaacttaatcctaactattgcactatatatataca
gi|9 : gatacacttatttttcttttctacgttaattatgttttgtaaatatgcattaaaaatcatccaaaatgttatttttcctctttgtcacgtatatcccagaagatcagaatttgaaaaaaaggggggggggtcaagattctT-GTTCGGTGG-TATTC----T-G-TGGTAAAAATAC-GTTCCCATT--GT---GA-TCTG-CCCAAACT-AAGAAAT-GAACAACGAATGAGAG-----GCGC----GAGAG--TATCGGGACGCAAACAAGAACTT-ATTGAAAGGTGAATACG-TTTCCGTTT-GG-TTCG--T-TTTTTAATCCCATTTCAATTTGTACTGGCCAGACGAGTTCGATCGCTGGTT--GCCAGCACAGCTGAGTTGAGAATTCACACT-GCGCGTCGCCATTACT-CTTGG-TCCCTACTTC-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTCATTGTTTCCCCTCCCAAAAATTTAGCATTTTTTCCAAATCATATCTTTATTTTTCCAATTTCAAAACAAAACAGAGATCACCGTATATAAATTAATTTTGCTGACAAAGAGAAAATACTTTTTTTTTTCATTTCAATTTCATTCTCCAAACCCCTGTACATGCTAAAGATTATGTGATATCAGATGAATGTGTAAAACAATAGAGGTATCCATTTAAGCAGATTTTTAGC
Unaligned ( gi|16 ): CAATGATTTTTTTCGGGCCAATATGCCACCGATAATGGGTGGTTTCCCCTCCCAAAAACTTAGTATTTTTTCCCAATCTGAATCATACATCTATTTTTTTCCCCAATTTCAAAAAAGTTCAGAAAAAGCA
Unaligned ( gi|23 ): AGCACCGTGTGTCATCATCTATACAGCTAGTAAAAACAATTCGTTCC