lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 4 2 1 4 2 333333 77777777777 1 1 1 44444444 2 1 3333333333333 444444444444444444444444444444 66666 222 444444 33333 11 33333 1 4444 1 55555555 22222 6666666 9999999999999 4 555555555555 1 33 333 11 33 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333 44444444444444444444444444 1111 22222222 222222 44444444444444444444 222222222 111 111 11 4
lowQualScore : 0 6 6 3 0 4 5 0 0 222222 77777777777 1 7 1 77777777 2 6 3 0 6666666666666 8 3 888888888888888888888888888888 77777 0 111 5 444444 3 66666 2 222 99 55 00000 0 5 6 2222 5 9 88888888 88888 4444444 2 3333333333333 0 666666666666 5 6 00 111 6 88 7 11 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 555 3 55555555555555555555555555 4 5555 99999999 333333 4 4 1 11111111111111111111 2 6 999999999 000 1 77 777 33 0 0 2
lowQualScore : . . . . . . . . . ...... ........... . . . ........ . . . . ............. . . .............................. ..... . ... . ...... . ..... . ... .. .. ..... . . . .... . . ........ ..... ....... . ............. . ............ . . .. ... . .. . .. ................................................................................................................................................................. . ... . .......................... . .... ........ ...... . . . .................... . . ......... ... . .. ... .. . . .
lowQualScore : 0 0 0 0 0 0 0 0 0 000000 00000000000 5 0 5 00000000 5 7 3 7 2222222222222 2 2 000000000000000000000000000000 88888 8 000 0 222222 2 22222 5 333 22 88 77777 7 5 7 9999 0 0 00000000 00000 5555555 5 0000000000000 0 000000000000 0 0 00 000 0 33 3 00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 000 6 55555555555555555555555555 0 2222 77777777 888888 4 4 1 00000000000000000000 2 7 222222222 000 7 99 000 88 2 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTNGGTATAAACANTCATTTTTGACGCAAGATATAATTTTTGTTTTGTAATC-GGAATNT--AAANAAAATTTAACNGGGTCGA-ATTTGTGCNCAAACTGCAAAATGAAA-TTAGTTTTTG-ATCTTT-AAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATNTC-ANATAAGCATTTCACC---ACTATTATGTTAA-TGACTGNG----ATTAAGTTTAC-CAAGAGAGG--GGC-ATGC----AAATGCTCAAAACCAATTG-CA-TTCTTAGAAATAGA-AGTGTGATTCAAGGTGTNGACACACCTACATATNTAACTGACAATCA--TATG-AAATGCAGTCATAGC--AGGGAGGAA-CAGTGANTGTAAATGCTGCTATTGTAATATTCCTGAAATGTTCATGAA--GTTTCA-TGAATTNNCCTNCAATTTT--ATTCATTG-AAT-----GTTC-ATGAACGTTCATGAAGT------AA--CA---CCCGC-CAATTTT----GT-TC---AATA-----GAACTA----CTAGTTCATGG--AATATT---CATG---AAT-CTT---AT-------TTCAT-GAATTA-ATTCAT-GA--CTTCATGGA-GT----GTC-CA-GAAT-AATAAGTTTCATGGG-TAG----TTCATGAA-----AT-TA-TTCATGAGCTGACACTCANGCGG-TTCAGGAATNTAA-TTCATGAA-AT----TTTT---CTTA--ATTGTTCATGAAGTATT-CC--TGA-TCATCTCACAGGG
Reference ( gi|1 ) : CATTGTTTTTTTTTGCAATAAAAAGAGTTTATTGTTCATTGTGGAATGTTCTATGCCAACATTAAGCTAGCTGCATTTCA-ATTTTTATTTTG-TATAAACAATAATTTTTAATACAA-ATATAA-TTT-G-TT-GTAATTTGGAATCTAAAAAAAAAATTAAACAGGGTCAATACTTGCGCCCAAACTGCAAAATG-AA-TTAGCTTTTGGATCTTT-AA-CACCTTTAACTAAGAAA--TATATTATCACAAATGTCTATATAAGCATTTCAAC-AAACTATTATGTT-A-TAACTGAT----ATTAAGTTTGCCCAAAAAAAG--GGT-ATGC----TAGTGCTCAAAACCAATTGCCATTTCTTAGACATGGATATTGTCTTTCAAGGTGTTAA-ACAT----ATATCTAACTGAC-ATCACTTGTGTTAATGCA-TCATAGCTGAGAAAGGGATCAGGGATTGCAAATGCTGCTATTCGAATATTCTTG-A-TATTCATGAA--GTTTCATTGAATTAA---ACA----T--ATTCATTG-GAT-----GTTCTATGAACATTCATGAAGT------AA--CA--CCCTGC-CAATTTT---AGT-TC---AATA-----GAACTACTTCCTAGTTCATGG--AATATT--TCA-G---AATTCTT---AT-------TTCAT-GAAT---ATTCAT-GA--CTTCATGGA-GT----GTC-C--GAAT-AATAAGTTTCATGGG-T-G----TTCATGAA-----AT-TA-TTCATGAGTCAACACTCAGGCTG-TTCAGGAATATAA-TTCATGAA-AT----TCTT---CTTA--ATTGTTCATGAAGTA-T-CC--TGATTCATCTCGCAGGG
gi|2 : TGCATTTCATATCTTCATTTTGGTATAAACATTCATTTTTAATGCAAGATATAA-TTTTG-TTTGTAATC-GGAATT---AAATAAAATTTAACGGGGTCGA-ATTTGT-CCCAAACTGCAAAATGAAA-TTAGTTTT--GATCTTTAAA-CACTTTTAGC-AAGAA------ATCCTCAT-AATTTC-ACATAATCATTTCACC---ACTATTATGTT-ATTAACTGTG----ATTAAGTTGGC-----AAGAGTTGGTCATGC----AAATGCT-AAAACCAATTA-CA-TTCTCAGAAATAGA-AGTATGATTCAAGGTG-TGA-ACAC-----T-TCTAACTGACAATCA--TATG-AAATGCAGTCATAGC--AGGGAGGAA-CAGTGA
gi|3 : gctTTGG-TATAAACAATCATTTTTGACACAAGATATAATTTT-GTTT-GTAATT--GAATGT---AAGAAAATTTAACTGGGTCAA-ATTTG-GCACAAACTGCAAATTGAAA-ATAGCATTTG------------ATTTTTAACT-AGAAATTTATCTTTTCA-AAATTTC---ATAAGTATTTCACCTGCACTGGTAAGTTAA-TGACTGA-----ATT-AGTTTA--CAAGAGTGG--GGC-ATGCAAATTAATGCTCAAAG-TAACTG-CA-TTCATAGAAATTGAatatg
gi|7 : AATG-AAATTAGTTTTTG-ATCTTT-AAACACAT--AAC--AAAAA---ATCTTATCA-AAATGTC-AGATAAGCATTTCACC---ACTATGATATCAA-TGACTTTG----ATTAAGTTTACATTGAGAGAG--GG----GC------ATGCTC-AAACCAACTG-CA-TTCTTAGAagtgtg
gi|8 : TCTTT-AAACACTTTTAAC-AAGAAA--TAT-TT-TCA-AAATGTCT-TATAAGCATTTCA------CTACTATGAT-A-TTATTGACTTTGATTAAGATTAC--AAGAGAGG--GGC-ATGC----AAGTGCTC-AAACCAATTG-CATTTattagaagtgtggttc
gi|15 : CAAGAGAGG--GGC-ATGC----AAGTGCTCAAAA-CAATTGCtaagaattag
gi|11 : aAAAGAGG--GGC-ATGC----AAATGCTC-AAACCAATTG-CA-TTCTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACACATCTACATATGTAATTGat
gi|4 : TGTAAATGCTGCTATTGTAATATTCCTGAA-TGTTTATGAA--GTTTTA-TGAATTTACCTGCAATTTT--GTTCA-TG-AACTACTAGTTC-ATGAATATTCATGAATT------AA---A-----TGCATGACTTCATGAGTGTC---AA-A-----TAA-TA------AGTTGATGG---GTAGT--TCATG---CA---TT---A--------TTCAT-GA--------CCT-GA--ACTCA-GCA-G-----GTT-CAGGAAT--ATAA--TTCGTGAA-T-T----TTTTTTTA-----AT-TA-TTCATGAg
gi|5 : taaATTCTTG-AATGTTCATGAA--GTTTCA-TGAATTaatatacctgatcatctcacaggg
gi|5 : TCATGAATAGTT-CAT-GAACTAC---CCA----TGAACTTATT---AT-----------TGGACACTCATGAAGT----------CA-----TG---AATTT----------------------------------AATTCATGA--AATA------A-G---A------------------TTCAT-GAAT---ATTCAT-AA--A--CAAGGATGTA---GTT-CATGAAC-A--AAATTGCGGGGGAT-GTAAATTCATGAA-----AC----TTCATG----AACATTCAAGtacatcccccgcaattttgttcatgaactacatccttgtttatgaatattcatgaatcttatttcatgaattaaattcatgacttcatgagtgtccaataataagttcatgggtagttcatgaactattcatgagctgaactccgctggttctggaatatgtttcatgattttttctttattgttcatgaagtattccatgatcatctaacagggg
gi|5 : att--ATTC-TTG-AAT-----GTTC-ATGAAGTTTCATGAATT------TA--CATCCCCCGC--AATTTT----GT-TC---A-T------GAACTACATCCTTGTTTATG---AATATT---CATG---AAT-CTT---AT-------TTCAT-GAATTAAATTCAT-GA--CTTCATG-A-GT----GTC-C---AAT-AATAAGTT-CATGGG-TAG----TTCATGAA------C-TA-TTCATGAGCTGA-ACTCCG-CTGGTTCTGGAATATGT-TTCATGAT--T----TTTT---CTTT--ATTGTTCATGAAGTA-T-TCCATGA-TCATCTAACAGGGgctgaactccgctggttctggaatatgtttcatgattttttctttattgttcatgaagtattccatgatcatctaacagggg
gi|4 : ATTGTAAT-----ATTCC-TGAATGTTTATGAAGTTTTATGAATTTA---CCTG--CAATTTT----GT-TC----AT------GAACTA----CTAGTTCAT-G--AATA-------------------------------TTCAT-GAATTAAATGCAT-GA--CTTCAT-GA-GT----GT--C--AAAT-AATAAG-TTGATGGG-TAG----TTCATG-C-----AT-TA-TTCATGACCTGA-ACTCAGCAGG-TTCAGGAATATAA-TTCGTGAA-TT----TTTT---TTTA--ATTATTCATGAAATA-TACC--TGA-TCATCTCACAGGGg
gi|4 : taatgtaaatgctgctACACTCATGAAGT----------CA-----TG--CA--TTT---AAT-TCATGAATATTCATGAACTA----GTAGTTCATGAACAAAATT--GCA-GGTAAATTCATAAAAC-------TTCAT-AAAC---ATTCAG-GA--
gi|6 : taatgtaaatgctgctattgtaatatCCCGC-AAATTT-----GT-TC---A-TG-----GA-CTACT-CCTAGTTTATG---AATATTCATAA-G---AAATCTT---AT-------TTCAT-GAACTAAATTCAT-GA--CTTCATG-A-GT----GTC-C---AAT-AATAAGTT-CATGGG-TAG----TTCAAGAA------T-TA-TTCATGAGCTGA-ACTCAA-CTGGTTCAGGAATATAA-TTCATGAT--T----TTTT---CTTA--ATTGTTCATGAAGTATT-CC--TAA-TCATCTCACAGGGcaaataataagttgatgggtagttcatgcattattcatgacctgaactcagcaggttcaggaatataattcgtgaatttttttttaattattcatgaaatatacctgatcatctcacaggg
gi|5 : TAGTTCATGA--ACTACC---CATG---AA--CTT---AT-------T--ATTGGAC---ACTCAT-GA--AGTCATGAA-TTTA--ATT-CATGAA---ATAAGATTCATGAA-T-A----TTCATAAACAAGGATGTAGTTCATGAA-CAAAATT---GCGG-----GGGATGTAAATTCATGAA-A------CTT---CATG--AACATTCAAGAA
gi|6 : aTAGTTCATGA--AATA------A-G---ATTTCTT---AT-------------GAAT---ATTCATAAA--CT--A-GGA-GTA---GTC-C----ATGAACAAATTTttcatgagctgaactccgctggttctggaatatgtttcatgattttttctttattgttcatgaagtattccatgatcatctaacagggg
gi|4 : cccgcTCA-GG--TATATT--TCATG---AATAATT---AAAAAAAAATTCAC-GAATTATATTCCT-GAACCTGC-TG-A-GTTCAGGTCAT--GAAT-AATG-----CATGAACT-A----CCCATCAA-----CT-TA-TT-AT---TTGACACTCATGAAG-T-CATGCATTTAA-TTCATGAATAT----TCATGAAC-TA--GTAGTTCATGAAaattcatgacttcatgagtgtccaataataagttcatgggtagttcaagaattattcatgagctgaactcaactggttcaggaatataattcatgattttttcttaattgttcatgaagtattcctaatcatctcacaggg
gi|6 : taatgtaaatgctgctattgtaatattcctgaatgtttatgaagttttatgaatttacctgcaattttgTCAT-GAATTATATTCCT-GA--ACCAGTTGA-GTTCA-GCT-CATGAAT-AAT-----TCTTGAACT-A----CCCATGAA-----CT-TA-TT-ATTGG---ACACTCATGAAG-T-CATGAATTTAG-TTCATGAA-ATAAGAT-TT---CTTATGAATATTCATAAACTA-tcatctcacaggg
gi|9 : cccgcaaatttgttcatggactactcc-GA--CTTCATG-A-CT----GTC-C---AAT-AATAAGTT-CATAGG-TAG----TTTATGAA------T-TA-TTCATGAGttttttcttaattgttcatgaagtattcctaatcatctcacaggg
gi|14 : T----TTTT---CTTA--ATTGTTCAGGAAGTATT-CC--TTA-TCATCTCGCAGGGctgtgttagttattcttgtaatgatgtatgttttataggattt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATGAATTATAGTAATAAAGAATGTAAATAAAAACCAATGTGTGTGTGCGTGTACTTGCATGTACATGCATGTGCATGTTGATGAAATTCAAGATTA
Unaligned ( gi|12 ): ATCTAACTGATACTCATCTTAAATGCAGTCAAATATGCAAATGCTGCTATTGTAA
Unaligned ( gi|13 ): GTATGAACCCAACTGACAGAAATGCAGTCATAACAGAGAGCAACATTGGATATGC
Unaligned ( gi|16 ): TGTGATATGCAGCCATAGCAGAGAGGAATAGTGA
Alignments
lowQualScore : 111111111111
lowQualScore : 1 2222222 222 1 11 1 11 1 1 222222 111 111 11 1 222 1111 444444444 22222222 11 55 4 333333333333 2 1 11 1111111 1 2 11 333 11 333333333 11 1 222222 222 1 22 333 111 111 2 22222 111
lowQualScore : 5 1 6 1 0 11 6 5555555 7 000 4 7 1 88 1 0 3 99 1 3 0 0 5 0 8 888888 1 8 1 777 444 11 0 1 66 0 6 444 6 2222 5 44 5 6 8 1 77 000000000 1 55555555 8 0 11 4 8 55 4 55 6 55 6 0 999999999999 3 3 88 6 8888888 0 1 33 888 33 333333333 77 0 3 111111 3 000 0 00 444 222 0 777 7 44444 1 777 0 8 8
lowQualScore : . . . . . .. . ....... . ... . . . .. . . . .. . . . . . . . ...... . . . ... ... .. . . .. . . ... . .... . .. . . . . .. ......... . ........ . . .. . . .. . .. . .. . . ............ . . .. . ....... . . .. ... .. ......... .. . . ...... . ... . .. ... ... . ... . ..... . ... . . .
lowQualScore : 5 0 7 0 7 33 7 7777777 3 777 0 3 0 33 0 7 3 00 0 2 8 0 6 8 0 000000 0 0 0 888 000 00 6 2 00 8 0 222 7 1111 0 44 7 7 0 2 00 000000000 0 11111111 0 8 00 6 0 66 5 55 0 00 0 0 000000000000 7 3 77 7 8888888 0 2 22 000 88 555555555 55 0 2 888888 2 000 0 00 222 222 8 000 5 22222 0 000 8 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAA-TTTTG-TTTGTAATT-GGAAT-TAAANAAAA--TTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGACA-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTNNAATATTCTTGA--TATTCATGAAGTTTCATTGAATTAA---ACA----TATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-ACA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATGGAATATT-CATGA---AT-CTTATTTCATGAATT-AA-TTCATGACTTCATGGAGTGTCCA-AATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
Reference ( family-158 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTNGGTATAAACANTCATTTTTGACGCAAGATATAATTTTTGTTTTGTAATC-GGAATNTAAANAAAA--TTTAACNGGGTCGA-ATTTGTGCNCAAACTGCAAAATGAAATTAGTTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATNTC-ANATAAGCATTTCAC---CA--CTATTATGTTAATGACTGNGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AATGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTNGACACACCTACATATNTAACTGACAATCA--TATGA-AATGCAGTCATAGC--AGGGAGGAA-CAGTGANTGTAAATGCTGCTATTGTAATATTCCTGAAATGTTCATGAAGTTTCAT-GAATTNNCCTNCAATTTTATTCATTGAATGTTC-ATGAACGTTCATGAAGTAACA---CCC-GCCAATTTT-GTTCAATAGA--ACTAC----T----AGTTCATGGAATATT-CATGA---AT-CTTATTTCATGAATT-AA-TTCATGACTTCATGGAGTGTCCAGAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGACACTCANGC-GGTTCAGGAATNTAATTCATGAAATTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCACAGGG
gi|1 : TGCATTTCA-ATTTTTATTTTG-TATAAACAATAATTTTTAATACAA-ATATAATTT--GTT--GTAATTTGGAATCTAAAAAAAAAATTAAACAGGGTCAATACTTGCGCCCAAACTGCAAAATGAA-TTAGCTTTTGGATCTTTAA-CACCTTTAACTAAGAAA--TATATTATCACAAATGTCTATATAAGCATTTCAA---CAAACTATTATGTTA-TAACTGATATTAAGTTTGC--CCAAAAAAAGGGTATGCT----AGTGCTCAAAACCAATTGCCATTTCTTAGACATGGATATTGTCTTTCAAGGTGTTAA---AC--ATATATCTAACTGACA-TCACTTGTGTTAATGCA-TCATAGCTGAGAAAGGGATCAGGGATTGCAAATGCTGCTATTCGAATATTCTTGA--TATTCATGAAGTTTCATTGAATTAA---ACA----TATTCATTGGATGTTCTATGAACATTCATGAAGTAACA---CCCTGCCAATTTTAGTTCAATAGA--ACTAC----TTCCTAGTTCATGGAATATTTCA-GA---ATTCTTATTTCATGAAT---A-TTCATGACTTCATGGAGTGTCC-GAATAATAAGTTTCATGGGT-GTTCATGAAATTATTCATGAGTCAACACTCAGGC-TGTTCAGGAATATAATTCATGAAATTCTTCTTAATTGTTCATGAAGTA-TCC-TGATTCATCTCGCAGGG
gi|11 : cattgtttttttttgcaataaaaagagtttattgttcattgtggaatgttctatgccaacattaagctagcAAAGAGGGGCATGCA----AATGCTCAAA-CCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACACATCTACATATGTAATTG
gi|12 : ATCTAACTGATACTCA--TCTTA-AATGCAGTCA-------------AA-TA-----TGCAAATGCTGCTATTGTAAg
gi|13 : AACTGACA---------GA-AATGCAGTCATAAC--AGAGAGCAA-CATTGGATAT
gi|14 : gtatgaacccTTTTTCTTAATTGTTCAGGAAGTATTCC-TTA-TCATCTCGCAGGGgc
gi|15 : --C-AAGAGAGGGGCATGCA----AGTGCTCAAAA-CAATTGC-ATg
gi|16 : a--TGTGA-TATGCAGCCATAGC--AGAGAGGAA-TAGTGA
gi|2 : TGCATTTCATATCTTCATTTTGGTATAAACATTCATTTTTAATGCAAGATATAA-TTTTG-TTTGTAATC-GGAAT-TAAATAAAA--TTTAACGGGGTCGA-ATTTGT-CCCAAACTGCAAAATGAAATTAG-TTTTG-ATCTTTAAACACTTTTAGC-AAGAAA------TCCTCA-TAATTTC-ACATAATCATTTCAC---CA--CTATTATGTTATTAACTGTGATTAAG-TTGG--C-AAGAGTTGGTCATGCA----AATGCT-AAAACCAATTAC-ATT-CTCAGAAATAGA-AGTATGATTCAAGGTGTGAACA---CT-----TCTAACTGACAATCA--TATGA-AATGCAGTCATAGC--AGGGAGGAA-CAGTGAATAT
gi|3 : gctTTGGTATAAACAATCATTTTTGACACAAGATATAA-TTTTG-TTTGTAATT--GAATGT-AAGAAAA--TTTAACTGGGTCAA-ATTTG-GCACAAACTGCAAATTGAAAATAGCATTTG-AT----------TTTTAAC-TAGAAATTTATCTTTTCA-AAATTTC---ATAAGTATTTCACCTGCA--CTGGTAAGTTAATGACTGA-ATT-AGTTTA---C-AAGAGTGGGGCATGCAAATTAATGCTCAAAG-TAACTGC-ATT-CATAGAAATTGA-AGTGTGg
gi|4 : TATTC-CTGAATGTTT-ATGAAGTTTTATGAATT--TA---CCT-GC-AATTTT-GTTCA-T-GA--ACTAC----T----AGTTCAT-GAATATT-CATGA---A---TTA------------AA-TGCATGACTTCAT-GAGTGTC--AAATAATAAG-TTGATGGGTAGTTCATG-CATTATTCATGACCTGA-ACTCA-GCAGGTTCAGGAATATAATTCGTGAATTTTTTTTTAATTATTCATGAAATATACC-TGA-TCATCTCACAGGG
gi|5 : taatgtaaatgctgctattgtaaATTC-TTGAATGTTC-ATGAAGTTTCATGAATTTACATCCCCC-GC-AATTTT-GTTCA-T-GA--ACTACATCCT----TGTTTATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAA-TTCATGACTTCAT-GAGTGTCC--AATAATAAG-TTCATGGGTAGTTCATG-AACTATTCATGAGCTGA-ACTC-CGCTGGTTCTGGAATATGTTTCATG-ATTTTTTCTTTATTGTTCATGAAGTATTCCATGA-TCATCTAACAGGG
gi|6 : ---CCC-GCAAATTT--GTTCA-TGGACTACTCC----T----AGTTTATG-AATATT-CATAAGAAAT-CTTATTTCATGAACT-AAATTCATGACTTCATG-AGTGTCCA--ATAATAAGTT-CATGGGTAGTTCAAGAA-TTATTCATGAGCTGA-ACTCAACT-GGTTCAGGAATATAATTCATGAT-TTTTTCTTAATTGTTCATGAAGTATTCC-TAA-TCATCTCACAGGGg
gi|7 : AATGAAATTAGTTTTTG-ATCTTTAAACACAT--AAC-AAAAAA--T--CTTATCA-AAATGTC-AGATAAGCATTTCAC---CA--CTATGATATCAATGACTTTGATTAAGTTTACATT-GAGAGAGGGGC----------ATGCTC-AAACCAACTGC-ATT-CTTAGAATTAGA-AGTGTGGTTC
gi|8 : TCTTTAAACACTTTTAAC-AAGAAA--TAT--TTTCA-AAATGTC-TTATAAGCATTTCAC---TA--CTATGATATTATTGACTTTGATTAAGATTA---C-AAGAGAGGGGCATGCA----AGTGCTC-AAACCAATTGC-ATT-TTAAGAATTAG
gi|9 : GACTTCATG-ACTGTCCA--ATAATAAGTT-CATAGGTAGTTTATGAA-TTATTCATGAGCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATGAATTATAGTAATAAAGAATGTAAATAAAAACCAATGTGTGTGTGCGTGTACTTGCATGTACATGCATGTGCATGTTGATGAAATTCAAGATTA
Alignments
lowQualScore : 1 22 2222 1 11 1 222222 111 111 11 222 1111 444444444 11111111 11 2 1 1 1 33333333 1 1 1 1111111 333333333 11 1 222222 11 2 2 2 2 2 1 22222 1
lowQualScore : 5 6 6 7 7 00 7777 1 3 0 3 88 3 6 0 5 0 8 888888 1 8 777 444 11 0 8 6 0 6 444 6 2222 0 5 44 5 6 8 1 666666666 88888888 3 8 0 11 8 111 22 0 5 3 3 77777777 0 0 0 4444444 333333333 77 0 3 111111 3 00 0 0 0 0 0 0 0 0 0 44444 5 0 8 8
lowQualScore : . . . . . .. .... . . . . .. . . . . . . ...... . . ... ... .. . . . . . ... . .... . . .. . . . . ......... ........ . . . .. . ... .. . . . . ........ . . . ....... ......... .. . . ...... . .. . . . . . . . . . ..... . . . .
lowQualScore : 5 7 7 3 3 00 3333 0 7 7 3 77 2 5 0 6 8 0 000000 0 0 666 000 00 6 8 0 8 0 222 7 1111 4 0 44 7 7 0 2 777777777 55555555 2 0 8 00 0 444 00 0 5 3 3 88888888 0 0 0 8888888 555555555 55 0 2 888888 2 00 0 0 4 8 4 8 8 4 0 22222 5 8 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATGGAATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
Reference ( family-158 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATT---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTNNAATATTCTTG-ATATTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATGGAATATT-CATGA---AT-CTTATTTCATGAATTAA-TTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
gi|1 : TGCATTTCA-ATTTTTATTTTG-TATAAACAATAATTTTTAATACAA-ATATAATTT-GTT-GTAATTTGGAATCTAAAAAAAAAATTAAACAGGGTCAATACTTGCGCCCAAACTGCAAAATGAA-TTAGCTTTTGGATCTTTAA-CACCTTTAACTAAGAAA--TATATTATCACAAATGTCTATATAAGCATTTCAA---CAAACTATTATGTTA-TAACTGATATTAAGTTTGC--CCAAAAAAAGGGTATGCT----AGTGCTCAAAACCAATTGCCATTTCTTAGACATGGATATTGTCTTTCAAGGTGTTAA---AC--ATATATCTAACTGAC-A-TCACTTGTGTTAATGCA-TCATAGCTGAGAAAGGGATCAGGGATTGCAAATGCTGCTATTCGAATATTCTTG-ATATTCATGAAGTTTCATTGAATTAAACATATTCATTGGATGTTCTATGAACATTCATGAAGT-AACA---CCCTGCCAATTTTAGTTCAATAGA--ACTAC----TTCCTAGTTCATGGAATATTTCA-GA---ATTCTTATTTCATGAAT--A-TTCATGACTTCATGGAGTGTCCGAATAATAAGTTTCATGGGT-GTTCATGAAATTATTCATGAGTCAACACTCAGGC-TGTTCAGGAATATAATTCATGAAATTCTTCTTAATTGTTCATGAAGTA-TCC-TGATTCATCTCGCAGGG
gi|11 : cattgtttttttttgcaataaaaagagtttattgttcattgtggaatgttctatgccaacattaagctagcAAAGAGGGGCATGCA----AATGCTCAAA-CCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACACATCTACATATGTAATTG
gi|12 : ATCTAACTGAT-ACTCA--TCTTA-AATGCAGTCA-------------AA-T-----ATGCAAATGCTGCTATTGTAAg
gi|13 : ACCCAACTGAC-A---------GA-AATGCAGTCATAAC--AGAGAGCAA-CATTGGAT
gi|14 : gtatgaTTTTTCTTAATTGTTCAGGAAGTATTCC-TTA-TCATCTCGCAGGGatgc
gi|15 : --C-AAGAGAGGGGCATGCA----AGTGCTCAAAA-CAATTGC-ATg
gi|16 : a--TGTGA-TATGCAGCCATAGC--AGAGAGGAA-TAGTGA
gi|2 : TGCATTTCATATCTTCATTTTGGTATAAACATTCATTTTTAATGCAAGATATAATTTTGTTTGTAATC-GGAATT---AAATAAAATTTAACGGGGTCGA-ATTTGT-CCCAAACTGCAAAATGAAATTAG-TTTTG-ATCTTTAAACACTTTTAGC-AAGAAA------TCCTCA-TAATTTC-ACATAATCATTTCAC---CA--CTATTATGTTATTAACTGTGATTAAG-TTGG--C-AAGAGTTGGTCATGCA----AATGCT-AAAACCAATTAC-ATT-CTCAGAAATAGA-AGTATGATTCAAGGTGTGAACA---CT-----TCTAACTGACAA-TCA--TATGA-AATGCAGTCATAGC--AGGGAGGAA-CAGTGAAT
gi|3 : gctTTGGTATAAACAATCATTTTTGACACAAGATATAATTTTGTTTGTAATT--GAATG---TAAGAAAATTTAACTGGGTCAA-ATTTG-GCACAAACTGCAAATTGAAAATAGCATTTG-AT----------TTTTAAC-TAGAAATTTATCTTTTCA-AAATTTC---ATAAGTATTTCACCTGCA--CTGGTAAGTTAATGACTG-AATT-AGTTTA---C-AAGAGTGGGGCATGCAAATTAATGCTCAAAG-TAACTGC-ATT-CATAGAAATTGA-AGTGTGatg
gi|4 : AATGTAAATGCTGCTATTGTAATATTCCTGAATGTTTATGAAGTTTTA-TGAATT
gi|4 : tATATTC-CTGAATGTTT-ATGAAGTTTTATGAATT---TA---CCT-GC-AATTTT-GTTCA-T-GA--ACTAC----T----AGTTCAT-GAATATT-CATGA---A---TTA-----------AA-TGCATGACTTCAT-GAGTGT-CAAATAATAAG-TTGATGGGTAGTTCATG-CATTATTCATGACCTGA-ACTCA-GCAGGTTCAGGAATATAATTCGTGAATTTTTTTTTAATTATTCATGAAATATACC-TGA-TCATCTCACAGGGtacctgcaattttgttcatgaactactagttcatgaatattcatgaattaaatgcatgacttcatgagtgtcaaataataagttgatgggtagttcatgcattattcatgacctgaactcagcaggttcaggaatataattcgtgaatttttttttaattattcatgaaatatacctgatcatctcacaggg
gi|5 : taatgtaaatgctgctattgtaATTC-TTGAATGTTC-ATGAAGTTTCATGAATTTA-CATCCCCC-GC-AATTTT-GTTCA-TG-A--ACTACATCCT----TGTTTATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATG-AGTGTCCAA-TAATAAGTT-CATGGGTAGTTCATGAA-CTATTCATGAGCTGA-ACTC-CGCTGGTTCTGGAATATGTTTCATG-ATTTTTTCTTTATTGTTCATGAAGTATTCCATGA-TCATCTAACAGGG
gi|6 : ---CCC-GC-AAATTT-GTTCA-TGGACTACTCC----T----AGTTTATG-AATATT-CATAAGAAAT-CTTATTTCATGAACTAAATTCATGACTTCATG-AGTGTCCAA-TAATAAGTT-CATGGGTAGTTCAAGAA-TTATTCATGAGCTGA-ACTCAACT-GGTTCAGGAATATAATTCATG-ATTTTTTCTTAATTGTTCATGAAGTATTCC-TAA-TCATCTCACAGGGg
gi|7 : AATGAAATTAGTTTTTG-ATCTTTAAACACAT--AAC-AAAAAA--T--CTTATCA-AAATGTC-AGATAAGCATTTCAC---CA--CTATGATATCAATGACTTTGATTAAGTTTACATT-GAGAGAGGGGCA----------TGCTC-AAACCAACTGC-ATT-CTTAGAATTAGA-AGTGTGGTTC
gi|8 : TCTTTAAACACTTTTAAC-AAGAAA--TAT--TTTCA-AAATGTC-TTATAAGCATTTCAC---TA--CTATGATATTATTGACTTTGATTAAGATTA---C-AAGAGAGGGGCATGCA----AGTGCTC-AAACCAATTGC-ATT-TTAAGAATTAG
gi|9 : GACTTCATG-ACTGTCCAA-TAATAAGTT-CATAGGTAGTTTATGAA-TTATTCATGAGCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATGAATTATAGTAATAAAGAATGTAAATAAAAACCAATGTGTGTGTGCGTGTACTTGCATGTACATGCATGTGCATGTTGATGAAATTCAAGATTA
Alignments
lowQualScore : 1 22 2222 1 11 1 222222 111 111 11 222 1111 444444444 11111111 11 1 1 1 1 33333333 1 1 1 1 1111 333333333 2 1 111 11 2 1 1 2 1 22222 1
lowQualScore : 5 6 6 7 7 00 4444 1 3 0 3 88 3 6 0 5 0 8 888888 1 8 777 444 11 0 8 6 0 6 444 6 2222 0 5 44 5 6 8 1 666666666 88888888 3 8 0 11 8 5 5 3 3 77777777 0 0 0 0 9999 333333333 7 0 3 777 22 44 0 3 0 0 5 0 5 0 0 44444 5 0 8 8
lowQualScore : . . . . . .. .... . . . . .. . . . . . . ...... . . ... ... .. . . . . . ... . .... . . .. . . . . ......... ........ . . . .. . . . . . ........ . . . . .... ......... . . . ... .. .. . . . . . . . . . ..... . . . .
lowQualScore : 5 7 7 3 3 00 3333 0 7 7 3 77 2 5 0 6 8 0 000000 0 0 666 000 00 6 8 0 8 0 222 7 1111 4 0 44 7 7 0 2 777777777 55555555 2 0 8 00 0 5 5 3 3 88888888 0 0 0 0 8888 555555555 5 0 2 555 55 00 0 8 6 8 4 8 6 4 0 22222 5 8 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
Reference ( family-158 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATGGAATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
gi|1 : TGCATTTCA-ATTTTTATTTTG-TATAAACAATAATTTTTAATACAA-ATATAATTT-GTT-GTAATTTGGAATCTAAAAAAAAAATTAAACAGGGTCAATACTTGCGCCCAAACTGCAAAATGAA-TTAGCTTTTGGATCTTTAA-CACCTTTAACTAAGAAA--TATATTATCACAAATGTCTATATAAGCATTTCAA---CAAACTATTATGTTA-TAACTGATATTAAGTTTGC--CCAAAAAAAGGGTATGCT----AGTGCTCAAAACCAATTGCCATTTCTTAGACATGGATATTGTCTTTCAAGGTGTTAA---AC--ATATATCTAACTGAC-A-TCACTTGTGTTAATGCA-TCATAGCTGAGAAAGGGATCAGGGATTGCAAATGCTGCTATTCGAATATTCTTGA-TATTCATGAAGTTTCATTGAATTAAACATATTCATTGGATGTTCTATGAACATTCATGAAGT-AACA---CCCTGCCAATTTTAGTTCAATAGA--ACTAC----TTCCTAGTTCATGGAATATTTCA-GA---ATTCTTATTTCATGAAT---ATTCATGACTTCATGGAGTGTCCGAATAATAAGTTTCATGGGT-GTTCATGAAATTATTCATGAGTCAACACTCAGGC-TGTTCAGGAATATAATTCATGAAATTCTTCTTAATTGTTCATGAAGTA-TCC-TGATTCATCTCGCAGGG
gi|11 : cattgtttttttttgcaataaaaagagtttattgttcattgtggaatgttctatgccaacattaagctagcAAAGAGGGGCATGCA----AATGCTCAAA-CCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACACATCTACATATGTAATTG
gi|12 : ATCTAACTGAT-ACTCA--TCTTA-AATGCAGTCA-----------------AAT--ATGCAAATGCTGCTATTGTAAg
gi|13 : ACCCAACTGAC-A---------GA-AATGCAGTCATAAC--AGAGAGCAA-CATTGGAT
gi|14 : gtatgaTTTTTCTTAATTGTTCAGGAAGTATTCC-TTA-TCATCTCGCAGGGatgc
gi|15 : --C-AAGAGAGGGGCATGCA----AGTGCTCAAAA-CAATTGC-ATg
gi|16 : a--TGTGA-TATGCAGCCATAGC--AGAGAGGAA-TAGTGA
gi|2 : TGCATTTCATATCTTCATTTTGGTATAAACATTCATTTTTAATGCAAGATATAATTTTGTTTGTAATC-GGAATT---AAATAAAATTTAACGGGGTCGA-ATTTGT-CCCAAACTGCAAAATGAAATTAG-TTTTG-ATCTTTAAACACTTTTAGC-AAGAAA------TCCTCA-TAATTTC-ACATAATCATTTCAC---CA--CTATTATGTTATTAACTGTGATTAAG-TTGG--C-AAGAGTTGGTCATGCA----AATGCT-AAAACCAATTAC-ATT-CTCAGAAATAGA-AGTATGATTCAAGGTGTGAACA---CT-----TCTAACTGACAA-TCA--TATGA-AATGCAGTCATAGC--AGGGAGGAA-CAGTGAAT
gi|3 : gctTTGGTATAAACAATCATTTTTGACACAAGATATAATTTTGTTTGTAATT--GAATG---TAAGAAAATTTAACTGGGTCAA-ATTTG-GCACAAACTGCAAATTGAAAATAGCATTTG-AT----------TTTTAAC-TAGAAATTTATCTTTTCA-AAATTTC---ATAAGTATTTCACCTGCA--CTGGTAAGTTAATGACTG-AATT-AGTTTA---C-AAGAGTGGGGCATGCAAATTAATGCTCAAAG-TAACTGC-ATT-CATAGAAATTGA-AGTGTGatg
gi|4 : AATGTAAATGCTGCTATTGTAATATTCCTGAATGTTTATGAAGTTTTA-TGAATT
gi|4 : tATATTC-CTGAATGTTT-ATGAAGTTTTATGAATT---TA---CCT-GC-AATTTT-GTTCA-TG-A--ACTAC----T----AGTTCATG-AATATT-CATGA---AT---------------TAAATGCATGACTTCATG-AGTGTC-AAATAATAAGTTG-ATGGGTAGTTCATGCA-TTATTCATGACCTGA-ACTCA-GCAGGTTCAGGAATATAATTCGTGAATTTTTTTTTAATTATTCATGAAATATACC-TGA-TCATCTCACAGGGtacctgcaattttgttcatgaactactagttcatgaatattcatgaattaaatgcatgacttcatgagtgtcaaataataagttgatgggtagttcatgcattattcatgacctgaactcagcaggttcaggaatataattcgtgaatttttttttaattattcatgaaatatacctgatcatctcacaggg
gi|5 : taatgtaaatgctgctattgtaATTC-TTGAATGTTC-ATGAAGTTTCATGAATTTA-CATCCCCC-GC-AATTTT-GTTCA-TG-A--ACTACATCCT----TGTTTATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCAT-GAGTGTCC-AATAATAAG-TTCATGGGTAGTTCATG-AACTATTCATGAGCTGA-ACTC-CGCTGGTTCTGGAATATGTTTCATG-ATTTTTTCTTTATTGTTCATGAAGTATTCCATGA-TCATCTAACAGGG
gi|6 : ---CCC-GC-AAATTT-GTTCA-TGGACTACTCC----T----AGTTTATG-AATATT-CATAAGAAAT-CTTATTTCATGAACTAAATTCATGACTTCATG-AGTGTCCAA-TAATAAGTT-CATGGGTAGTTCAAGAA-TTATTCATGAGCTGA-ACTCAACT-GGTTCAGGAATATAATTCATG-ATTTTTTCTTAATTGTTCATGAAGTATTCC-TAA-TCATCTCACAGGGg
gi|7 : AATGAAATTAGTTTTTG-ATCTTTAAACACAT--AAC-AAAAAA--T--CTTATCA-AAATGTC-AGATAAGCATTTCAC---CA--CTATGATATCAATGACTTTGATTAAGTTTACATT-GAGAGAGGGGCA----------TGCTC-AAACCAACTGC-ATT-CTTAGAATTAGA-AGTGTGGTTC
gi|8 : TCTTTAAACACTTTTAAC-AAGAAA--TAT--TTTCA-AAATGTC-TTATAAGCATTTCAC---TA--CTATGATATTATTGACTTTGATTAAGATTA---C-AAGAGAGGGGCATGCA----AGTGCTC-AAACCAATTGC-ATT-TTAAGAATTAG
gi|9 : GACTTCATG-ACTGTCCAA-TAATAAGTT-CATAGGTAGTTTATGAA-TTATTCATGAGCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATGAATTATAGTAATAAAGAATGTAAATAAAAACCAATGTGTGTGTGCGTGTACTTGCATGTACATGCATGTGCATGTTGATGAAATTCAAGATTA
Alignments
lowQualScore : 1 22 2222 1 11 1 222222 111 111 11 222 1111 444444444 11111111 11 1 1 1 1 33333333 1 1 1 1 1111 333333333 1 1 111 11 2 1 1 2 1 22222 1
lowQualScore : 5 6 6 7 7 00 4444 1 3 0 3 88 3 6 0 5 0 8 888888 1 8 777 444 11 0 8 6 0 6 444 6 2222 0 5 44 5 6 8 1 666666666 88888888 3 8 0 11 8 5 5 3 3 77777777 0 0 0 0 9999 333333333 0 0 3 777 22 44 0 3 0 0 5 0 5 0 0 44444 5 0 8 8
lowQualScore : . . . . . .. .... . . . . .. . . . . . . ...... . . ... ... .. . . . . . ... . .... . . .. . . . . ......... ........ . . . .. . . . . . ........ . . . . .... ......... . . . ... .. .. . . . . . . . . . ..... . . . .
lowQualScore : 5 7 7 3 3 00 3333 0 7 7 3 77 2 5 0 6 8 0 000000 0 0 666 000 00 6 8 0 8 0 222 7 1111 4 0 44 7 7 0 2 777777777 55555555 2 0 8 00 0 5 5 3 3 88888888 0 0 0 0 8888 555555555 0 0 2 555 55 00 0 8 6 8 4 8 6 4 0 22222 5 8 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
Reference ( family-158 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
gi|1 : TGCATTTCA-ATTTTTATTTTG-TATAAACAATAATTTTTAATACAA-ATATAATTT-GTT-GTAATTTGGAATCTAAAAAAAAAATTAAACAGGGTCAATACTTGCGCCCAAACTGCAAAATGAA-TTAGCTTTTGGATCTTTAA-CACCTTTAACTAAGAAA--TATATTATCACAAATGTCTATATAAGCATTTCAA---CAAACTATTATGTTA-TAACTGATATTAAGTTTGC--CCAAAAAAAGGGTATGCT----AGTGCTCAAAACCAATTGCCATTTCTTAGACATGGATATTGTCTTTCAAGGTGTTAA---AC--ATATATCTAACTGAC-A-TCACTTGTGTTAATGCA-TCATAGCTGAGAAAGGGATCAGGGATTGCAAATGCTGCTATTCGAATATTCTTGA-TATTCATGAAGTTTCATTGAATTAAACATATTCATTGGATGTTCTATGAACATTCATGAAGT-AACA---CCCTGCCAATTTTAGTTCAATAGA--ACTAC----TTCCTAGTTCATGGAATATTTCA-GA---ATTCTTATTTCATGAAT---ATTCATGACTTCATGGAGTGTCCGAATAATAAGTTTCATGGGT-GTTCATGAAATTATTCATGAGTCAACACTCAGGC-TGTTCAGGAATATAATTCATGAAATTCTTCTTAATTGTTCATGAAGTA-TCC-TGATTCATCTCGCAGGG
gi|11 : cattgtttttttttgcaataaaaagagtttattgttcattgtggaatgttctatgccaacattaagctagcAAAGAGGGGCATGCA----AATGCTCAAA-CCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACACATCTACATATGTAATTG
gi|12 : ATCTAACTGAT-ACTCA--TCTTA-AATGCAGTCA-----------------AAT--ATGCAAATGCTGCTATTGTAAg
gi|13 : ACCCAACTGAC-A---------GA-AATGCAGTCATAAC--AGAGAGCAA-CATTGGAT
gi|14 : gtatgaTTTTTCTTAATTGTTCAGGAAGTATTCC-TTA-TCATCTCGCAGGGatgc
gi|15 : --C-AAGAGAGGGGCATGCA----AGTGCTCAAAA-CAATTGC-ATg
gi|16 : a--TGTGA-TATGCAGCCATAGC--AGAGAGGAA-TAGTGA
gi|2 : TGCATTTCATATCTTCATTTTGGTATAAACATTCATTTTTAATGCAAGATATAATTTTGTTTGTAATC-GGAATT---AAATAAAATTTAACGGGGTCGA-ATTTGT-CCCAAACTGCAAAATGAAATTAG-TTTTG-ATCTTTAAACACTTTTAGC-AAGAAA------TCCTCA-TAATTTC-ACATAATCATTTCAC---CA--CTATTATGTTATTAACTGTGATTAAG-TTGG--C-AAGAGTTGGTCATGCA----AATGCT-AAAACCAATTAC-ATT-CTCAGAAATAGA-AGTATGATTCAAGGTGTGAACA---CT-----TCTAACTGACAA-TCA--TATGA-AATGCAGTCATAGC--AGGGAGGAA-CAGTGAAT
gi|3 : gctTTGGTATAAACAATCATTTTTGACACAAGATATAATTTTGTTTGTAATT--GAATG---TAAGAAAATTTAACTGGGTCAA-ATTTG-GCACAAACTGCAAATTGAAAATAGCATTTG-AT----------TTTTAAC-TAGAAATTTATCTTTTCA-AAATTTC---ATAAGTATTTCACCTGCA--CTGGTAAGTTAATGACTG-AATT-AGTTTA---C-AAGAGTGGGGCATGCAAATTAATGCTCAAAG-TAACTGC-ATT-CATAGAAATTGA-AGTGTGatg
gi|4 : AATGTAAATGCTGCTATTGTAATATTCCTGAATGTTTATGAAGTTTTA-TGAATT
gi|4 : tATATTC-CTGAATGTTT-ATGAAGTTTTATGAATT---TA---CCT-GC-AATTTT-GTTCA-TG-A--ACTAC----T----AGTTCATG-AATATT-CATGA---AT---------------TAAATGCATGACTTCATG-AGTGTC-AAATAATAAGTTG-ATGGGTAGTTCATGCA-TTATTCATGACCTGA-ACTCA-GCAGGTTCAGGAATATAATTCGTGAATTTTTTTTTAATTATTCATGAAATATACC-TGA-TCATCTCACAGGGtacctgcaattttgttcatgaactactagttcatgaatattcatgaattaaatgcatgacttcatgagtgtcaaataataagttgatgggtagttcatgcattattcatgacctgaactcagcaggttcaggaatataattcgtgaatttttttttaattattcatgaaatatacctgatcatctcacaggg
gi|5 : taatgtaaatgctgctattgtaATTC-TTGAATGTTC-ATGAAGTTTCATGAATTTA-CATCCCCC-GC-AATTTT-GTTCA-TG-A--ACTACATCCT----TGTTTATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCAT-GAGTGTCC-AATAATAAG-TTCATGGGTAGTTCATG-AACTATTCATGAGCTGA-ACTC-CGCTGGTTCTGGAATATGTTTCATG-ATTTTTTCTTTATTGTTCATGAAGTATTCCATGA-TCATCTAACAGGG
gi|6 : ---CCC-GC-AAATTT-GTTCA-TGGACTACTCC----T----AGTTTATG-AATATT-CATAAGAAAT-CTTATTTCATGAACTAAATTCATGACTTCATG-AGTGTCCAA-TAATAAGTT-CATGGGTAGTTCAAGAA-TTATTCATGAGCTGA-ACTCAACT-GGTTCAGGAATATAATTCATG-ATTTTTTCTTAATTGTTCATGAAGTATTCC-TAA-TCATCTCACAGGGg
gi|7 : AATGAAATTAGTTTTTG-ATCTTTAAACACAT--AAC-AAAAAA--T--CTTATCA-AAATGTC-AGATAAGCATTTCAC---CA--CTATGATATCAATGACTTTGATTAAGTTTACATT-GAGAGAGGGGCA----------TGCTC-AAACCAACTGC-ATT-CTTAGAATTAGA-AGTGTGGTTC
gi|8 : TCTTTAAACACTTTTAAC-AAGAAA--TAT--TTTCA-AAATGTC-TTATAAGCATTTCAC---TA--CTATGATATTATTGACTTTGATTAAGATTA---C-AAGAGAGGGGCATGCA----AGTGCTC-AAACCAATTGC-ATT-TTAAGAATTAG
gi|9 : GACTTCATG-ACTGTCCAA-TAATAAGTT-CATAGGTAGTTTATGAA-TTATTCATGAGCTG
blockSeqs : T G G T T G T T G . T A C . A . TTTATC C . AC CTG . T T T CAT . AATT A AC . . . A CACATCTAC ACTCA C . . . A . . . TACATCC . . . . GACT ATCCT . . T GAA C TT G A A G C A . AGCA A A .
blockSeqs : G G T T . G G T . G A T . A . TAT T . AG . . A T T G . . A AC . . . A CACT AATCA G . . . . . TA . . . . A T . . T . C CT . A A T A . . CGCT . . .
blockSeqs : A . . A . TC A . TT . . A T A . . . A AC . . . G A A . . . . . . . A T . . T . . T . A . . A . . AACT . . .
blockSeqs : . . . T . . . . T . . . . . A C . . . . . . . . . . . . . . .
blockSeqs : . . . A . .
blockSeqs : . . G .
blockSeqCons : TC**** AN* ** *** **
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAA--TATCTTNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAAATC----TTNTCA-AAATGTCAN-ATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTA---C-AAGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATGAATTATAGTAATAAAGAATGTAAATAAAAACCAATGTGTGTGTGCGTGTACTTGCATGTACATGCATGTGCATGTTGATGAAATTCAAGATTA
Alignments
lowQualScore : 1 22 2222 1 11 1 1111 111 111 111 11 111111 1111 444444444 11111111 11 1 1 1 1 33333333 1 1 1 1 1111 333333333 1 1 111 11 2 1 1 2 1 22222 1
lowQualScore : 5 6 6 7 7 00 4444 1 3 0 3 88 3 6 0 5 0 8 7777 111 1 8 777 444 11 0 8 6 0 000000 2222 0 5 44 5 6 8 1 666666666 88888888 3 8 0 11 8 5 5 3 3 77777777 0 0 0 0 9999 333333333 0 0 3 777 22 44 0 3 0 0 5 0 5 0 0 44444 5 0 8 8
lowQualScore : . . . . . .. .... . . . . .. . . . . . . .... ... . . ... ... .. . . . . ...... .... . . .. . . . . ......... ........ . . . .. . . . . . ........ . . . . .... ......... . . . ... .. .. . . . . . . . . . ..... . . . .
lowQualScore : 5 7 7 3 3 00 3333 0 7 7 3 77 2 5 0 6 8 0 0000 888 0 0 888 000 00 6 8 0 8 222222 1111 4 0 44 7 7 0 2 777777777 55555555 2 0 8 00 0 5 5 3 3 88888888 0 0 0 0 8888 555555555 0 0 2 555 55 00 0 8 6 8 4 8 6 4 0 22222 5 8 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAA----ATCT--TNTCA-AAATGTC-ATATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--A---AGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
Reference ( family-158 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTCATATCTTCATTTTGGTATAAACAATCATTTTTAATACAAGATATAATTTTGTTTGTAATT-GGAATN---AAANAAAATTTAACGGGGTCGA-ATTTGCGCCCAAACTGCAAAATGAAATTAGCTTTTG-ATCTTTAAACACTTTTAAC-AAGAA----ATCT--TNTCA-AAATGTC-ANATAAGCATTTCAC---CA--CTATTATGTTANTGACTGTGATTAAGTTTAC--A---AGAGAGGGGCATGCA----AGTGCTCAAAACCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACA-ACCTACATATCTAACTGAC-A-TCA--TGTGA-AATGCAGTCATAGC--AGAGAGGAA-CAGTGAATGCAAATGCTGCTATTGTAATATTCCTGAATGTTCATGAAGTTTCATTGAATTAAACATATTC-TTGAATGTTC-ATGAAGTTTCATGAATT-A-CA---CCC-GC-AATTTT-GTTCA-TGGA--ACTAC----T----AGTTCATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCATGGAGTGTCCAAATAATAAGTTTCATGGGTAGTTCATGAAATTATTCATGAGCTGA-ACTCANGC-GGTTCAGGAATATAATTCATGAATTTTTTCTTAATTGTTCATGAAGTATTCC-TGA-TCATCTCGCAGGG
gi|1 : TGCATTTCA-ATTTTTATTTTG-TATAAACAATAATTTTTAATACAA-ATATAATTT-GTT-GTAATTTGGAATCTAAAAAAAAAATTAAACAGGGTCAATACTTGCGCCCAAACTGCAAAATGAA-TTAGCTTTTGGATCTTTAA-CACCTTTAACTAAGAA----ATATATTATCACAAATGTCTATATAAGCATTTCAA---CAAACTATTATGTTA-TAACTGATATTAAGTTTGCCCA---AAAAAAGGGTATGCT----AGTGCTCAAAACCAATTGCCATTTCTTAGACATGGATATTGTCTTTCAAGGTGTTAA---AC--ATATATCTAACTGAC-A-TCACTTGTGTTAATGCA-TCATAGCTGAGAAAGGGATCAGGGATTGCAAATGCTGCTATTCGAATATTCTTGA-TATTCATGAAGTTTCATTGAATTAAACATATTCATTGGATGTTCTATGAACATTCATGAAGT-AACA---CCCTGCCAATTTTAGTTCAATAGA--ACTAC----TTCCTAGTTCATGGAATATTTCA-GA---ATTCTTATTTCATGAAT---ATTCATGACTTCATGGAGTGTCCGAATAATAAGTTTCATGGGT-GTTCATGAAATTATTCATGAGTCAACACTCAGGC-TGTTCAGGAATATAATTCATGAAATTCTTCTTAATTGTTCATGAAGTA-TCC-TGATTCATCTCGCAGGG
gi|11 : cattgtttttttttgcaataaaaagagtttattgttcattgtggaatgttctatgccaacattaagctagc---AAAGAGGGGCATGCA----AATGCTCAAA-CCAATTGC-ATT-CTTAGAAATAGA-AGTGTGATTCAAGGTGTGAACACATCTACATATGTAATTG
gi|12 : ATCTAACTGAT-ACTCA--TCTTA-AATGCAGTCA-----------------AAT--ATGCAAATGCTGCTATTGTAAg
gi|13 : ACCCAACTGAC-A---------GA-AATGCAGTCATAAC--AGAGAGCAA-CATTGGAT
gi|14 : gtatgaTTTTTCTTAATTGTTCAGGAAGTATTCC-TTA-TCATCTCGCAGGGatgc
gi|15 : AC--A---AGAGAGGGGCATGCA----AGTGCTCAAAA-CAATTGC-ATg
gi|16 : --TGTGA-TATGCAGCCATAGC--AGAGAGGAA-TAGTGA
gi|2 : TGCATTTCATATCTTCATTTTGGTATAAACATTCATTTTTAATGCAAGATATAATTTTGTTTGTAATC-GGAATT---AAATAAAATTTAACGGGGTCGA-ATTTGT-CCCAAACTGCAAAATGAAATTAG-TTTTG-ATCTTTAAACACTTTTAGC-AAGAA----ATC----CTCA-TAATTTC-ACATAATCATTTCAC---CA--CTATTATGTTATTAACTGTGATTAAGTTGGC--A---AGAGTTGGTCATGCA----AATGCT-AAAACCAATTAC-ATT-CTCAGAAATAGA-AGTATGATTCAAGGTGTGAACA---CT-----TCTAACTGACAA-TCA--TATGA-AATGCAGTCATAGC--AGGGAGGAA-CAGTGAAT
gi|3 : gctTTGGTATAAACAATCATTTTTGACACAAGATATAATTTTGTTTGTAATT--GAATG---TAAGAAAATTTAACTGGGTCAA-ATTTG-GCACAAACTGCAAATTGAAAATAGCATTTG-AT----------TTTTAAC-TAGAAATTTATCT--TTTCA-AAATTTC---ATAAGTATTTCACCTGCA--CTGGTAAGTTAATGACTG-AATT-AGTTTAC--A---AGAGTGGGGCATGCAAATTAATGCTCAAAG-TAACTGC-ATT-CATAGAAATTGA-AGTGTGatg
gi|4 : AATGTAAATGCTGCTATTGTAATATTCCTGAATGTTTATGAAGTTTTA-TGAATT
gi|4 : tATATTC-CTGAATGTTT-ATGAAGTTTTATGAATT---TA---CCT-GC-AATTTT-GTTCA-TG-A--ACTAC----T----AGTTCATG-AATATT-CATGA---AT---------------TAAATGCATGACTTCATG-AGTGTC-AAATAATAAGTTG-ATGGGTAGTTCATGCA-TTATTCATGACCTGA-ACTCA-GCAGGTTCAGGAATATAATTCGTGAATTTTTTTTTAATTATTCATGAAATATACC-TGA-TCATCTCACAGGGtacctgcaattttgttcatgaactactagttcatgaatattcatgaattaaatgcatgacttcatgagtgtcaaataataagttgatgggtagttcatgcattattcatgacctgaactcagcaggttcaggaatataattcgtgaatttttttttaattattcatgaaatatacctgatcatctcacaggg
gi|5 : taatgtaaatgctgctattgtaATTC-TTGAATGTTC-ATGAAGTTTCATGAATTTA-CATCCCCC-GC-AATTTT-GTTCA-TG-A--ACTACATCCT----TGTTTATG-AATATT-CATGA---AT-CTTATTTCATGAATTAAATTCATGACTTCAT-GAGTGTCC-AATAATAAG-TTCATGGGTAGTTCATG-AACTATTCATGAGCTGA-ACTC-CGCTGGTTCTGGAATATGTTTCATG-ATTTTTTCTTTATTGTTCATGAAGTATTCCATGA-TCATCTAACAGGG
gi|6 : ---CCC-GC-AAATTT-GTTCA-TGGACTACTCC----T----AGTTTATG-AATATT-CATAAGAAAT-CTTATTTCATGAACTAAATTCATGACTTCATG-AGTGTCCAA-TAATAAGTT-CATGGGTAGTTCAAGAA-TTATTCATGAGCTGA-ACTCAACT-GGTTCAGGAATATAATTCATG-ATTTTTTCTTAATTGTTCATGAAGTATTCC-TAA-TCATCTCACAGGGg
gi|7 : AATGAAATTAGTTTTTG-ATCTTTAAACACAT--AAC-AAAAA----ATCT--TATCA-AAATGTC-AGATAAGCATTTCAC---CA--CTATGATATCAATGACTTTGATTAAGTTTAC--ATTGAGAGAGGGGCA----------TGCTC-AAACCAACTGC-ATT-CTTAGAATTAGA-AGTGTGGTTC
gi|8 : TCTTTAAACACTTTTAAC-AAGAA----ATAT--TTTCA-AAATGTC-TTATAAGCATTTCAC---TA--CTATGATATTATTGACTTTGATTAAGATTAC--A---AGAGAGGGGCATGCA----AGTGCTC-AAACCAATTGC-ATT-TTAAGAATTAG
gi|9 : GACTTCATG-ACTGTCCAA-TAATAAGTT-CATAGGTAGTTTATGAA-TTATTCATGAGCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATGAATTATAGTAATAAAGAATGTAAATAAAAACCAATGTGTGTGTGCGTGTACTTGCATGTACATGCATGTGCATGTTGATGAAATTCAAGATTA