lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 444444444 1111111 222 22222222 11 333333333333 1111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444444444444444 22222 111111 11111111 111111 2222222222 11111 00000000000000000000000000000000000000000000000000000000000000 2222222 111 44444444444444 1 1 66666666666666 111 11111 11111111 888888888888888888888888888888888888888888888888888
lowQualScore : 777777777 0 8888888 333 5 77 44444444 6 8 44 777 4 4 333333333333 5 4 4 6 2222222 8 8 4 66 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 333333333333333 4 9999 8 777 4 88888 4 222222 88888888 8 66 4 44 4 4 7 66 2 99 5 444444 66 6666666666 22222 44444444444444444444444444444444444444444444444444444444444444 888 8 2 4444444 1 111 4 00000000000000 2 4 6666 7 99999999999999 5 4 000 4 33333 4 4 66666666 777 8888 444444444444444444444444444444444444444444444444444 6
lowQualScore : ......... . ....... ... . .. ........ . . .. ... . . ............ . . . . ....... . . . .. ........................................................................................ . ............... . .... . ... . ..... . ...... ........ . .. . .. . . . .. . .. . ...... .. .......... ..... .............................................................. ... . . ....... . ... . .............. . . .... . .............. . . ... . ..... . . ........ ... .... ................................................... .
lowQualScore : 333333333 8 6666666 666 7 99 33333333 6 9 88 888 4 3 333333333333 6 4 4 0 2222222 9 9 4 11 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 888888888888888 4 4444 9 888 4 00000 4 888888 22222222 9 11 4 77 4 4 7 99 0 00 0 444444 99 9999999999 55555 99999999999999999999999999999999999999999999999999999999999999 222 0 5 5555555 9 000 0 88888888888888 8 0 1111 0 00000000000000 7 0 666 0 22222 0 0 55555555 111 5555 000000000000000000000000000000000000000000000000000 0
consensus : GGGGGGGGGNNCACTCA-TTTATATTAG-------GGGG--TGG-GA--GG-G----T-TCTGACAAACGGGGTTT-GA---T-TTTTGCAG-AT---------TTTGTCT-ACAAT-GGGGT-TT----AT-A-A-TTT--AAC-C-AGT-GTC------TGAATA---GGGGTATA-------TGAA-A-A---CAAG---TCTA--TAATG-TAC-AT--GGGCTTT---GGTGTTAC--AT-N---CTG--GTCAA-T----CA-C---CTA-TG--CGTG-T------GC---AG---G-A--AAC-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG----------TAA-----TC---------ATA------------------CATA---------------T-----A-A----GA-G-TTC-TATGAAGGG-------GTGTATATTTTT---A-GAA------------TATCGGT-CTA-C--AATGGG----G---C-----AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GG-G-GTTCG-GGACCCAC----ATTCG-------AAC-C---------C--------------CCCCAATACCA----ATATTTTTCAGAGTA
Reference ( gi|5 ) : GGGAGGGGGCCCAATCAGTTTATATTAG-------AGGG--TGG-GA--GG-G----T-TCTGACAAATGGGGTTT-GA---T-TTTTGTAG-CT---------TTTATCT-ACAAT-GAGGT-TT----AT-A-A-TTT--AAC-C-AGT-GTC------TGAATA---GGGGTATA-------TGAA-A-A---CTAG---TCTA--TAATGGTATAAT--GGGTTTT---GGTGCTAC--AT-T---CTG--ATCAA-T----CA-C---CTA-TA--CATG-T------GC---AA---G-A--AAC-AGCCTTT-TAA-TCCTTCTAAAAT--TGTTAATC-AT-C------ACTGATTG--CTGTG----------TAA-----TC---------ATG------------------CATA---------------T-----A-A----GA-A-TTC-TATGAAGGG-------GTGTATATTTTT---A-AAT------------CATCGAT-CTA-C--ATTGGG----G---G-----AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-AG-G-GTTTG-GGACCCAC----ATTCG-------AGC-C---------C--------------TCCCAATACCA----ATATTTTCCAGAGTAAC
gi|11 : GGGGGGGGACTCACTC----TATATTAT-------GGGG---GG-GA--GG-G----G-T-TGACAAACGGGGTTA-TA---T-TTTTGCAG-AT---------TTTGTCT-ACGAT-GGGGT-TT----AT-ATATTTT--GACGCAAGTAGTC------TGAATATGTGTGATATAGTAAGTTTGAATATA---CAAGTTTTCTA--T--T--TTTCATCGGGGTTTCTTAGGTGTTAC--ATATA--CTGGAATCAA-TGTACCA-CATTTTA-TT--TTTG-TGCTTTGGC---AG---G-A--AACTAGCC-TT-TAA-TCATACTA
gi|1 : ggaGGGAGGGGGGGGACTCACTCTATATTAT-------GGGG---GG-GA--GG-G----G-T-TGACAAACGGGGTTA-TA---T-TTTTGCAG-AT---------TTTGTCT-ACGAT-GGGGT-TT----AT-ATA-TTT--ca
gi|7 : atgttttgcacactcggcgtcgccatattgaattacctaattatatatgcgtgtcaaaggtcataggggaaaaaataacgttatcaagcacgcagcctgttgataaatataaggatatatagctttctttcagactttctaatgatatatatatttttgggtgggtgggtgatattttgacatgattcgtttacattaaatagatatttccttcagcatattttattttttgaaagttcaaaaaacatttgccatgccatgannnnnnnnnnnnnnnnnnnnnnnnnaccagatcaaataggcctatagggtctaccttacacagttaatttggtacagctatgctagcatgccatatttctggttacttcttttatgtcatattcttgtatgataggttactttcatccattcattaatattgcactcctgattcgtatataaactaataatcgacgccatctgccctgaaaggggGGGGGTCC------TTTATATTGGCGGGGGTAGGGCATGGTGC--GG-G----TGTCTGACAAACCGGGTTTTGA---T-TTTTGCAG-AT---------TT-GTC--ACTAT-GG----------AT-A-G-TT---AAC----GT-GTC------TGAA-A---AGGGTA-A-------TGAA-A-A-----AG----CTA--TAATG------C--GG--TTT---GGCTTTACCAAT-A---CTG--GTCAA-T----CA-C---TTA-TG--TGCGGT------GC---AG---G-A--AAC-GGC-TTT-TAA-TCCTCCTAAAATATTGTTAATC-AT-C------ACTGATTGAGCAGTGG---------TAA-----TC---------ATAACATAAA-----------CATA---------------TTTCGTATA----GA-G-TTC-TATTGAAAG-------GTGTATATTTTTT--A-AAT------------AATCG-T-CTA-C--AATGGGTT--G---AC----AAATTGACA-TAAAA--TTTAG-TCGA---CTGA-TG-GGGTG-GG-A-GT----GGACCCAC----tgacgcaag
gi|3 : AATTTGTAGCAG-------GTGG--TAG-GG--GG-A----T-TCTGACCAAGGGGGT---GA---T-TTTTTTCG-TTCAGAAGAATTTTGTCT-ACAAT-GGGAAATT----ATCA-A-TTT--AAC-C-AGT-GTC------TGAATA---GGGATATA-------TGAA-A-AAGTCAAGT--TCTATGTAATGGT----T--TGGTT------GTTTTAC--AT-TTTACTG--GTCAATT----CACC---CTACTA--CGTG-T------GC---AG---GAA--AAC-AGCC-TA-TAA-TCCTCCTAAAAT--TG-TAATT-AT-C------ACTGATTA--CTGTGAAGCATATTATAAAAAACTT---------ATATTC---------------CATA---------------T-----ATA----GA-AGCTC-TAT-AAGGGCGGCCAAGTGTATATATTT---A-GAA------------TACCAGTCCTAGC--AATGGGTTACC---A-----AAATTGATATTAAAAATTTTAGTTCTA---C-GATTGTGGCTACAG-----TAG-GAACCCAT----ATTAG-------ACC-C---------C--------------CCCC
gi|9 : gggtggggtgttaTATTAG-------GTGG--TAG-GA--GG--------TTAAACTAACGGGATT--GA---T-CTTTTCAG---------------AT-------T-GGGGT-AT----AT-A-A-TTT--AAC-C-A-T-GTCAGTTTTTATATA---GGGGTATA-------TGAA-A-A---TAAA---TCTA--C------------------------GTACTAC----------TG--GTCAA-T----TA-C---CT---------G-T------GC---AG---G-A--AAC-AGC-TTT-TAA-TCCTTCTTAAAT--TGTTAATT-TT-C------ACTTATTG--CTCTG----------TAA-----TC---------ATA------------------CATA---------------------A-ATCTTAA-A-TTCATATGA-----------GT-TCTATTTTA---A-GAA------------TATCGGT-CTA-C--AATGGG----GTTAC-----AAATTTACA-TAAAA--TTTAG-TCTA---C-GA-TA-GGATA-TG-GCGTTCG-AGACCAAC----ATGCA-------AACAC---------A--------------TCCCA--ACCA----ATATTTccctcccttcccac
gi|2 : AG-------AGGA--AGG-GG--GG-GGTGTT-TCTGAAAAAATGAGTTT-GA---T-TTT-GCAGACT---------TTTTTCT-ACAAT-GGGGT-T-----AT-A-A-TTC-----------------------AACA---AGTGTACA--------------A---TTGG---CCT---------TAT--T--GGGGTTT---GGTGTTAC--AT-AA--CTGC-GTCAA-T----CA-C---TTG-T------G-T------GC---AATT-GCATTAAC-AGCCCTTGTAG-TCCTTCCAAAAT--T--TAATTTATTC------A-TGATTG--CTGTG----------TGA-----TC---------ATA------------------CATAAAATTTATATTCGCAT-----A-A----GACG-TTC-TATGAAGGGTGTACA-ATGTATATTTT------AAT-------------ATTGGT-CTA-TCAAATGGT----A---C-----AAATTGACA-TAAAAA-TTTAT-TCTAA--C-GA-TG-GGGTA-AT-G-GTTCA-GGACCCAC----ATTCatca
gi|16 : ataaagacgtttggtgtggtggtggaG-------AGGG---GG-GATTGGTG----T-TCTGACAAACAGGGTT--GACATT-TCTTGCAG-AT---------TTTGTCT-ACAAT-GGGGT-TT----ATCA-A-TTT--ATC-C--GT-GTC------TGAATA---GGGGTATA-------TGAA-A-T---CAAG---TCcatagacgctaaagcaagacctttgctttacgtctatgcattcgaccccccccccccccccccaatatttttcagagtacc
gi|8 : ggggGGGTTT-AA---T-ATTTGCAG-AT---------TTTGTCT-ATAAA-GGGGT-GT----AT-A-A-TTT--AAC-C--------------------------------------TGAA-A-A---C-A-----------AAT-GTACAAT--GGGCTTT---GGTGTTAC--AT-A---CAG--GTCAA-T----CA-C---CTA-TA--GGTA-T------GC---TG---G-A--ATC-AGTCTTT-TAA-TCCTCCTAAAAT--TGTTAACT-AT-T------ACTAATTG--CTGTG----------TAA-----TC---------ATACATACATATT--------CATA---------------T-----A-A----GA-G-TTA-TATGAAGGA-------GTATATATTTTT---A-GAA------------TATCGGT-CTA-G--AATGGA----GTTAC-----AAATTAACA-AAAAA--ATCAG-TCTA---G-GA-AG-GGGT---GCG-GTTCGCGAATACATTCGAATTCG-------AAC-CCCCACCCCAC--------------TCCCCACCCCAATATATATTTTTCAGAGTAgtaactggggtcat
gi|6 : TT-AA---TATTTTGCAGATT---------TTTGTCTTATAAAAGGGGT-TTGTGTAT-A-A-TTTTAAAC-C--------------------------------------TGAA-A-A---C---------A---AATG-TACAAT--GGGCTTTA--GGTGTTACC-AT-TAG-CAG---TCAA-T----CAAC---CTA-TA--GGTA-T------GCTGGAACGTG-A--ATC-AGTCTTT-TAAATCCTCCTAAAAT--TGT-AACT-AT-T------ACTAATTG--CTGTG----------TAA-----TCAACATACATATT------------------CATA---------------T-----A-A----GA-G--TA-TATGAAGGA-------GTATATATTTTT---A-GAA------------TATCG-T-CTA-G--AATGGA----A---AAATACAAATTAACA-AAAAA--ATCAG-TCTAATTT-GA-AG-GGGTG-CG-G-TTTCG-CGAACTAC----ATTCGAATTCGAAAC-C---------CCCACCCCACCCCCACCCCAATATTAT---ATTTTTTTCAGAGTAc
gi|13 : g---CTG--GTCAA-T----CA-C---CTA-TG--CCTG-T------GC---AG---G-A--AAC-ATCCTTT-TAA-TCCT-CTAAAAA---ACTAATT-AT-C------ACTGATTG--CTTTG----------TAA-----TC---------ATA------------------CATA---------------------A-ATCTTAT-A-TTCATAT-AAGAG-------TTCTAT-TTTTT---A-GAA------------TATCGGT-CTA-C--AATGGG----G-------------T-----TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GG-G-ATTCG-GAACCCAC----ATTCG-------AAC-C---------C--------------CC----TACCA----ATATTTGTCAGAGTAccc
gi|14 : ctaTCAA-T----CA-C---TTG-TGTGCGTG-T------GC---AG---G-A--AAC-AGGCTTT-GAA-TCTTCCTAAAAT--TGTTAATT-AT-CACTAGTACTGATTG--CTGTG----------TAA-----TC---------ATATATATAAAATTTAATATTCATA---------------T-----A-A----GA-G-TTC-TATGAAGGG-------GT
gi|15 : ------------------CATA---------------T-----A-ACAT-GA-A-TTA-TATGAAGGG-------GTGTGGATTTTTCAAA-AAT-------------ATCGGT-CTA-C--AATGGA----GTTAC-----AAATTGACA-TAAAA--TTTGG-TC-------------------------CTCG-GGACCCAC----ATTAG-------A
gi|19 : taatcatacataaaacttatataaTC-TGTGAAGGG-------GTGTATATTTTT---AGAATATTTTTATAAAATATCGGT-CTA-C--CATGGG----G------------TT---A-CAAAA------G-TCTA---T-GA-TG-GGGTA-GG-A-GTTTG-GGACCCAC----ATTCa
gi|17 : ATATTTTT---A-GAA------------TATCGGT-CTA-C--AATGAG----G---TTTC--AAATTGACA-TAAAA--TGTAG-TCTA---C-GA-TG-GAGTA-GG-G-ATTCT-GGACCCAC----ATTCG-------ACC-C---------C--------------CCCTA-----A----ATATTTTTTAG
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): ATGTTTTGCACACTCGGCGTCGCCATATTGAATTACCTAATTATATATGCGTGTCAAAGGTCATAGGGGAAAAAACGACGTTATCATGCACGCAGCCTGTTGATGAATATAAGTTAACGATATATAGCTTTCTTTCAGACTAATGATAAATATATATATTTTAGGGGGTTATATTTTGACATGATTGTTTACTTAATGGAATATTTCCTTTAGGCATATTTTATTTTTTTAAAAGTTCAAAAAACATCTGTCATAATGTGCCTCAAATATAGTTAATGGTACATGTCACATGTGAATTTACGTAAGCCTGCCTATGGTTACTCTTTATATTCTATATTATTATTACTCATTTTCATTAAAACTAATTGCAAATTTTGATTAGTACAAATAAAAATATAG
Unaligned ( gi|10 ): TAGCTTCTTCGGATTTTCATAGTGAAATATAATATATTTTTAGGGGAGTGGGTGATAATTTGTCAGATTCGTTTACATATATTTCCTTAGCATATTTTATTTTTTAAGTTAAAAAAAAAAAACCACTTTGTCATGTCATTGTTAAAACGCTAAGCTGCTTATGTTCTTAATATTTTGATTACCCCCATTCATAAACTAGATGTGCAATTCTGATTGTACCAATTGCAAATTAAAACAAATAGATAAATTAAAAATGATACCCCCTGAGGCGGA
Unaligned ( gi|12 ): CTGTTGATAAATATAAGGATGTAGCTTTTTTCAGACTTTCTAATGAAATATATGTATTTTTAGGGGGGGTGATAATTTGTCCTGATTCTTTTACATAATGAATATTTCCTTTAGCATACTTTATTTTTTCAAAGTTATAAAAAAAAAACATTAATTTTGTCATGTCCCTTAGTTACGCTAACCTGCCCATGGTTACTCTTTATATCTATATTATGAATACCCCATTTCATTAAACCTAATGTGCAAA
Unaligned ( gi|18 ): GATGTTTTGCACACTCGGCGTCGCCAGAATTACCTAATAATGGTCATAGGGGAAAAACGATGTTATCATGCACACAGCCTGTTGATAAATATAAGAATATATA
Unaligned ( gi|20 ): GATGTTTTTGCACACTCGGGCTCGCCATATTGAATTACCTAAT
Alignments
lowQualScore : 2222 11111111 2222222222222 11 1111 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 22222222222 1111111 111111 11111 111111 2222222222 11111 999999999999999999999999999999999999999999999999999999999999999 2222222 2222222222222 4444444444444444 1111111 666666666666666 111
lowQualScore : 22 55 4444 66 9 88888888 8888888888888 4 22 777 4 777 55 2222 4 4 4 44 8888 8 8 99 77777777777777777777777777777777777777777777777777777777777777777777777777777777 5555 5 66 33333333333 4 55 4 8888 8 777 4444444 4 111111 777 4 55 00000 4 4 2 4 4 66 4 4 222222 66 3333333333 11111 777 000000000000000000000000000000000000000000000000000000000000000 4 4 7 1 2222222 0 55 3 0000000000000 0 3 3 55 1111111111111111 2 444 555 3 3 77777 3 3 44 2 3 7777 6666666 5 000000000000000 444 3 5
lowQualScore : .. .. .... .. . ........ ............. . .. ... . ... .. .... . . . .. .... . . .. ................................................................................ .... . .. ........... . .. . .... . ... ....... . ...... ... . .. ..... . . . . . .. . . ...... .. .......... ..... ... ............................................................... . . . . ....... . .. . ............. . . . .. ................ . ... ... . . ..... . . .. . . .... ....... . ............... ... . .
lowQualScore : 00 88 6666 99 8 11111111 2222222222222 5 44 000 0 000 55 5555 0 0 0 99 5555 0 0 55 88888888888888888888888888888888888888888888888888888888888888888888888888888888 6666 0 99 11111111111 4 55 0 5555 0 000 7777777 0 555555 000 0 55 00000 0 0 3 0 0 11 4 4 888888 11 9999999999 11111 888 666666666666666666666666666666666666666666666666666666666666666 0 0 3 4 3333333 7 00 6 0000000000000 5 6 6 00 6666666666666666 0 444 222 6 6 55555 6 6 00 0 6 7777 2222222 0 666666666666666 666 0 7
consensus : GGGGGGGGGCCCACTCA-TTTATATTAG--GGGGTGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGG---GGTATA-------TGAA-A-A---CAAG-T---CTATAATG-TACAAT-GGG-TTT----GG-TG--TTAC--A---T-A--CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAA-TTA-TC------ACTGATTG--CTGTG----------TAA-----T---CATA----------CAT---------------A------------------T-----A----A----G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---C--AAATTGACA-T-AAAA--TTTAG-TCT-A---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
Reference ( family-1499 ) : GGGGGGGGGNNCACTCA-TTTATATTAG--GGGGTGGGA--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGG---GGTATA-------TGAA-A-A---CAAG-T---CTATAATG-TACA-T-GGGCTTT----GG-TG--TTAC--A---T-N--CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAA-TTA-TC------ACTGATTG--CTGTG----------TAA-----T---CATA----------CAT---------------A------------------T-----A----A----G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---C--AAATTGACA-T-AAAA--TTTAG-TCT-A---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
gi|1 : GGGGGGGGACTCACTC----TATATTAT--GGGG-GGGA--------GG------G----G-T-TGACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTT--
gi|11 : atgttttgcacactcggcgtcgccatattgaattacctaattatatatgcgtgtcaaaggtcataggggaaaaaataacgttatcaagcacgcagcctgttgataaatataaggatatatagctttctttcagactttctaatgatatatatatttttgggtgggtgggtgatattttgacatgattcgtttacattaaatagatatttccttcagcatattttattttttgaaagttcaaaaaacatttgccatgccatgannnnnnnnnnnnnnnnnnnnnnnnnaccagatcaaataggcctatagggtctaccttacacagttaatttggtacagctatgctagcatgccatatttctggttacttcttttatgtcatattcttgtatgataggttactttcatccattcattaatattgcactcctgattcgtatataaactaataatcgacgccatctgccctgaaagggggggaGGGGGGGGACTCACTC----TATATTAT--GGGG-GGGA--------GG------G----G-T-TGACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTTT-GACGCAAGTAGTC------TGAATATGTGTGATATAGTAAGTTTGAATATA---CAAG-TTTTCTAT--TT-TTCA-TCGGGGTTTCTTAGG-TG--TTACATA---T-A--CTG-GAATCAA-TGTACCA-CATTTTA-TT--TTTG-TGCTTTGGCA---GG-A--A-----A-CTAGCC-TT-TAA-TCATACTAtgacgcaag
gi|13 : gga---T-A--CTG-G--TCAA-T----CA-C---CTA-TG--CCTG-T------GCA---GG-A--A-----A-C-ATCCTTT-TAA-TCCTCTAAAAA----ACTAA-TTA-TC------ACTGATTG--CTTTG----------TAA-----T---CATA----------CAT---------------A------------------A-----ATCTTA----T-A--TTCATAT-AAGAG-------TTCTAT-TTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---T------------T-AAAA--TTTAG-TCT-A---C-GA-TG-GGGTA-GGGATTCG-GAACCCAC----ATTCG-------AAC-CC---------------CC----TACCA-ATATTTGTCAGAGTAca
gi|14 : c--TCAA-T----CA-C---TTG-TGTGCGTG-T------GCA---GG-A--A-----A-C-AGGCTTT-GAA-TCTTCCTAAAAT--TGTTAA-TTA-TCACTAGTACTGATTG--CTGTG----------TAA-----T---CATA----------TAT---------------ATAAAATTTAATATTCATAT-----A----A----G-A-GTTC-TATGAAGGG-------GT
gi|15 : A----------CAT---------------A------------------T-----A----ACAT-G-A-ATTA-TATGAAGGG-------GTGTGGATTTTTCAAAAAT-A-------------TCGGT-CTA-C--AATGG---A-----GTTAC--AAATTGACA-T-AAAA--TTTGG-TC------------------------CTCG-GGACCCAC----ATTAG-------AA
gi|16 : taatcatacataaaacttatataG--GGGGAGGGG--------GGATTGGTG----T-TCTGACAAACAGGGTT--GACATT-TCTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----ATCA-ATTT--ATC-C--GT-GTC------TGAATAGG---GGTATA-------TGAA-A-T---CAAG-T---C
gi|17 : ATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGA---G-----GTTTC--AAATTGACA-T-AAAA--TGTAG-TCT-A---C-GA-TG-GAGTA-GGGATTCT-GGACCCAC----ATTCG-------ACC-CC---------------CCCTA-----A-ATATTTTTTAGgtaactggggtcat
gi|19 : TC-TGTGAAGGG-------GTGTATATTTTT--AGAAT-ATTTTTATAAAATATCGGT-CTA-C--CATGG---G-----G---------TT---A-C-AAAA------G-TCT-A---T-GA-TG-GGGTA-GGAGTTTG-GGACCCAC----ATTC
gi|2 : AG--AGGAAGGGG--------GG------GGTGTT-TCTGAAAAAATGAGTTT-GA---T-TTT----G--CAGAC---TTTT-TTCT-ACAAT-GGGG--TT----AT-A-ATTC--AAC-AA-GT-GT----------ACA--------AT--------TG------------G-C---CT-TATTG--------GGG-TTT----GG-TG--TTAC--A---TAA--CTGCG--TCAA-T----CA-C---TT-------GTG-T------GCAATTGC-ATTA-----A-C-AGCCCTTGTAG-TCCTTCCAAAAT----TTAATTTATTC------A-TGATTG--CTGTG----------TGA-----T---CATA----------CATAAAATTTATATTCGCA------------------T-----A----A----G-ACGTTC-TATGAAGGGTGTACA-ATGTATATTTT-----AAT-A-------------TTGGT-CTA-TCAAATGG---T-----A---C--AAATTGACA-TAAAAA--TTTAT-TCTAA---C-GA-TG-GGGTA-ATGGTTCA-GGACCCAC----ATTC
gi|2 : ataaagacgtttggtgtggtggtggaC-CC---------------CCCC----CCA-ATATTTTTCAGAGTAcatagacgctaaagcaagacctttgctttacgtctatgcattcgaccccccccccccccccccaatatttttcagagtacc
gi|3 : ataaagacgtttggtgtggtggtggaagaggaaggggggggtgtttctgaaaaaatgagtttgattttgcagacttttttctacaatggggttataattcaacaagtgtacaattggccttattggggtttggtgttacataactgcgtcaatcacttgtgtgcaattgcattaacagcccttgtagtccttccaaaatttaatttattcatgattgctgtgtgatcatacataaaatttatattcgcataagacgttctatgaagggtgtacaatgtatattttaatattggtctatcaaatggtacaaattgacataaaaatttattctaacgatggggtaatggttcaggacccacattccatagacgctaaagcaagacctttgctttacgtctatgcattcgacccccccccA-TTTGTAGCAG--GTGGTAGGG--------GG------A----T-TCTGACCAAGGGGGT---GA---T-TTTTTTCGTTCAGAAGAATTTT-GTCT-ACAAT-GGGAAATT----ATCA-ATTT--AAC-CA-GT-GTC------TGAATAGG---GATATA-------TGAA-A-AAGTCAAGTT---CT---ATG-TA-A-T-GG--TTT----GGTTGTTTTAC--ATTTT-A--CTG-G--TCAATT----CACC---CTACTA--CGTG-T------GCA---GGAA--A-----A-C-AGCC-TA-TAA-TCCTCCTAAAAT--TG-TAA-TTA-TC------ACTGATTA--CTGTGAAGCATATTATAAAAAACT---TATATTC-------CAT---------------A------------------T-----AT---A----GAA-GCTC-TAT-AAGGGCGGCCAAGTGTATATATTT--AGAAT-A-------------CCAGTCCTAGC--AATGG---GTT---A---CCAAAATTGATATT-AAAAATTTTAGTTCT-A---C-GATTGTGGCTA-CAG--TAG-GAACCCAT----ATTAG-------ACC-CC---------------CCCCcc
gi|5 : gggtggggtgttaaGGGAGGGGGCCCAATCAGTTTATATTAG--AGGGTGGGA--------GG------G----T-TCTGACAAATGGGGTTT-GA---T-TTTT---G--TAGC----TTTT-ATCT-ACAAT-GAGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGG---GGTATA-------TGAA-A-A---CTAG-T---CTATAATGGTATAAT-GGGTTTT----GG-TG--CTAC--A---T-T--CTG-A--TCAA-T----CA-C---CTA-TA--CATG-T------GCA---AG-A--A-----A-C-AGCCTTT-TAA-TCCTTCTAAAAT--TGTTAA-TCA-TC------ACTGATTG--CTGTG----------TAA-----T---CATG----------CAT---------------A------------------T-----A----A----G-A-ATTC-TATGAAGGG-------GTGTATATTTTT--AAATC-A-------------TCGAT-CTA-C--ATTGG---G-----G---G--AAATTGACA-T-AAAA--TTTAG-TCT-A---C-GA-TG-GGGTA-AGGGTTTG-GGACCCAC----ATTCG-------AGC-CC---------------TCCCAATACCA-ATATTTTCCAGAGTAccctcccttcccac
gi|6 : TT-AA---TATTTT---G--CAGA----TTTTTGTCTTATAAAAGGGGT-TTGTGTAT-A-ATTTTAAAC-C--------------------------------------TGAA-A-A---CAA-----------ATG-TACAAT-GGGCTTTA---GG-TG--TTACC-A---T-TAGC-A-G--TCAA-T----CAAC---CTA-TA--GGTA-T------GCT---GG-A--ACGTGAATC-AGTCTTT-TAAATCCTCCTAAAAT--TGT-AA-CTA-TT------ACTAATTG--CTGTG----------TAA-----TCAACATACATATT----CAT---------------A------------------T-----A----A----G-A-G-TA-TATGAAGGA-------GTATATATTTTT--AGAAT-A-------------TC-GT-CTA-G--AATGG---AAAAATA---C--AAATTAACA-A-AAAA--ATCAG-TCT-AATTT-GA-AG-GGGTG-CGGTTTCG-CGAACTAC----ATTCGAATTCGAAAC-CCCCACCCCACCCCCA-CCCCAATATTATATTTTTTTCAGAGTAac
gi|7 : gGGGGGTCC------TTTATATTGGCGGGGGTAGGGCATGGTGCGG------G----TGTCTGACAAACCGGGTTTTGA---T-TTTT---G--CAGA----TTT--GTC--ACTAT-GG----------AT-A-GTT---AAC----GT-GTC------TGAA-AAG---GGTA-A-------TGAA-A-A-----AG-----CTATAATG-C-------GG-TTT----GG-CT--TTACCAA---T-A--CTG-G--TCAA-T----CA-C---TTA-TG--TGCGGT------GCA---GG-A--A-----A-C-GGC-TTT-TAA-TCCTCCTAAAATATTGTTAA-TCA-TC------ACTGATTGAGCAGTGG---------TAA-----T---CATAACATAAA---CAT---------------A------------------TTTCGTAT---A----G-A-GTTC-TATTGAAAG-------GTGTATATTTTT--TAAATAA-------------TC-GT-CTA-C--AATGGGTTG-----A---C--AAATTGACA-T-AAAA--TTTAG-TCG-A---CTGA-TG-GGGTG-GGAGT----GGACCCAC----ccc
gi|8 : GGGTTT-AA---T-ATTT---G--CAGA----TTTT-GTCT-ATAAA-GGGGT-GT----AT-A-ATTT--AAC-C--------------------------------------TGAA-A-A---CAA-----------ATG-TACAAT-GGGCTTT----GG-TG--TTAC--A---T-A--CAG-G--TCAA-T----CA-C---CTA-TA--GGTA-T------GCT---GG-A--A-----T-C-AGTCTTT-TAA-TCCTCCTAAAAT--TGTTAA-CTA-TT------ACTAATTG--CTGTG----------TAA-----T---CATACATACATATTCAT---------------A------------------T-----A----A----G-A-GTTA-TATGAAGGA-------GTATATATTTTT--AGAAT-A-------------TCGGT-CTA-G--AATGG---A-----GTTAC--AAATTAACA-A-AAAA--ATCAG-TCT-A---G-GA-AG-GGGT--GCGGTTCGCGAATACATTCGAATTCG-------AAC-CCCCACCCCACTCCCCACCCCAATAT---ATATTTTTCAGAGTA
gi|9 : TATTAG--GTGGTAGGA--------GG-------------TTAAACTAACGGGATT--GA---T-CTTT---T--CAGA----TT--------------GGGGT-AT----AT-A-ATTT--AAC-CA--T-GTCAGTTTTTATATAGG---GGTATA-------TGAA-A-A---TAAA-T---CTAC---G-TAC--------------------------------T-A--CTG-G--TCAA-T----TA-C---CT---------G-T------GCA---GG-A--A-----A-C-AGC-TTT-TAA-TCCTTCTTAAAT--TGTTAA-TTT-TC------ACTTATTG--CTCTG----------TAA-----T---CATA----------CAT---------------A------------------------A----ATCTTA-A-ATTCATATGA-----------GT-TCTATTTTA--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----GTTAC--AAATTTACA-T-AAAA--TTTAG-TCT-A---C-GA-TA-GGATATGGCGTTCG-AGACCAAC----ATGCA-------AACACA---------------TCCCA--ACCA-ATATTTATCAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATGTTTTGCACACTCGGCGTCGCCATATTGAATTACCTAATTATATATGCGTGTCAAAGGTCATAGGGGAAAAAACGACGTTATCATGCACGCAGCCTGTTGATGAATATAAGTTAACGATATATAGCTTTCTTTCAGACTAATGATAAATATATATATTTTAGGGGGTTATATTTTGACATGATTGTTTACTTAATGGAATATTTCCTTTAGGCATATTTTATTTTTTTAAAAGTTCAAAAAACATCTGTCATAATGTGCCTCAAATATAGTTAATGGTACATGTCACATGTGAATTTACGTAAGCCTGCCTATGGTTACTCTTTATATTCTATATTATTATTACTCATTTTCATTAAAACTAATTGCAAATTTTGATTAGTACAAATAAAAATATAG
Unaligned ( gi|10 ): TAGCTTCTTCGGATTTTCATAGTGAAATATAATATATTTTTAGGGGAGTGGGTGATAATTTGTCAGATTCGTTTACATATATTTCCTTAGCATATTTTATTTTTTAAGTTAAAAAAAAAAAACCACTTTGTCATGTCATTGTTAAAACGCTAAGCTGCTTATGTTCTTAATATTTTGATTACCCCCATTCATAAACTAGATGTGCAATTCTGATTGTACCAATTGCAAATTAAAACAAATAGATAAATTAAAAATGATACCCCCTGAGGCGGA
Unaligned ( gi|12 ): CTGTTGATAAATATAAGGATGTAGCTTTTTTCAGACTTTCTAATGAAATATATGTATTTTTAGGGGGGGTGATAATTTGTCCTGATTCTTTTACATAATGAATATTTCCTTTAGCATACTTTATTTTTTCAAAGTTATAAAAAAAAAACATTAATTTTGTCATGTCCCTTAGTTACGCTAACCTGCCCATGGTTACTCTTTATATCTATATTATGAATACCCCATTTCATTAAACCTAATGTGCAAA
Unaligned ( gi|18 ): GATGTTTTGCACACTCGGCGTCGCCAGAATTACCTAATAATGGTCATAGGGGAAAAACGATGTTATCATGCACACAGCCTGTTGATAAATATAAGAATATATA
Unaligned ( gi|20 ): GATGTTTTTGCACACTCGGGCTCGCCATATTGAATTACCTAAT
Alignments
lowQualScore : 2222 11111111 22222222222 11 1111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 2222 222222 1111111 111111 11111 111111 2222222222 11111 999999999999999999999999999999999999999999999999 2222222 2222222222222 4444444444444444 11111 1111111 666666666666666 111
lowQualScore : 55 4444 66 3 88888888 33333333333 5 44 22 777 4 777 55 2222 4 4 4 9999999 8 8 99 6666666666666666666666666666666666666666666666666666666666666666666666666666666 5 2222 5 66 000000 4 4 4 55 4 8888 8 777 4444444 4 111111 777 4 55 00000 4 4 2 4 4 66 0 4 4 222222 66 3333333333 11111 777 000000000000000000000000000000000000000000000000 4 4 7 1 2222222 0 55 3 0000000000000 0 3 3 55 1111111111111111 2 3 888 3 11111 3 3 44 2 3 7777 6666666 5 000000000000000 444 3 5
lowQualScore : .. .... .. . ........ ........... . .. .. ... . ... .. .... . . . ....... . . .. ............................................................................... . .... . .. ...... . . . .. . .... . ... ....... . ...... ... . .. ..... . . . . . .. . . . ...... .. .......... ..... ... ................................................ . . . . ....... . .. . ............. . . . .. ................ . . ... . ..... . . .. . . .... ....... . ............... ... . .
lowQualScore : 88 6666 99 5 11111111 22222222222 0 88 44 000 0 000 55 5555 0 0 0 2222222 0 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5555 0 99 555555 4 4 4 55 0 5555 0 000 7777777 0 555555 000 0 55 00000 0 0 3 0 0 11 8 4 4 888888 11 9999999999 11111 888 666666666666666666666666666666666666666666666666 0 0 3 4 3333333 7 00 6 0000000000000 5 6 6 00 6666666666666666 0 6 888 6 11111 6 6 00 0 6 7777 2222222 0 666666666666666 666 0 7
consensus : GGGGGGGGGCCCACTCA-TTTATATTAG--GGGGNGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAATG-TACAA---------------T--GGG-TTT----GG-TG--TTAC--A---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATA----------CATA------------------T-----A----A----G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---C--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
Reference ( family-1499 ) : GGGGGGGGGCCCACTCA-TTTATATTAG--GGGGTGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAATG-TACAA---------------T--GGG-TTT----GG-TG--TTAC--A---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATA----------CATA------------------T-----A----A----G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---C--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
gi|1 : GGGGGGGGACTCACTC----TATATTAT--GGGGGGGAG--------GG------G----T-T--GACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTT--
gi|11 : atgttttgcacactcggcgtcgccatattgaattacctaattatatatgcgtgtcaaaggtcataggggaaaaaataacgttatcaagcacgcagcctgttgataaatataaggatatatagctttctttcagactttctaatgatatatatatttttgggtgggtgggtgatattttgacatgattcgtttacattaaatagatatttccttcagcatattttattttttgaaagttcaaaaaacatttgccatgccatgannnnnnnnnnnnnnnnnnnnnnnnnaccagatcaaataggcctatagggtctaccttacacagttaatttggtacagctatgctagcatgccatatttctggttacttcttttatgtcatattcttgtatgataggttactttcatccattcattaatattgcactcctgattcgtatataaactaataatcgacgccatctgccctgaaagggggggaGGGGGGGGACTCACTC----TATATTAT--GGGGGGGAG--------GG------G----T-T--GACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTTT-GACGCAAGTAGTC------TGAATATGTGTGATAT---AG---TAAG-TTTG-AATA-TACAAGTTTTCTATTTTTCATCGGGG-TTTCTTAGG-TG--TTACATA---T-A-CTG-GAATCAA-TGTACCA-CATTTTA-TT--TTTG-TGCTTTGGCA---GG-A--A-----A-CTAGCC-TT-TAA-TCATACTAtgacgcaag
gi|13 : gga---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CCTG-T------GCA---GG-A--A-----A-C-ATCCTTT-TAA-TCCTCTAAAAA----ACTAATT-AT-C------ACTGATTG--CTTTG----------TAA-----T---CATA----------CATA------------------A-----ATCTTA----T-A--TTCATAT-AAGAG-------TTCTAT-TTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---T------------TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGATTCG-GAACCCAC----ATTCG-------AAC-CC---------------CC----TACCA-ATATTTGTCAGAGTAca
gi|14 : c--TCAA-T----CA-C---TTG-TGTGCGTG-T------GCA---GG-A--A-----A-C-AGGCTTT-GAA-TCTTCCTAAAAT--TGTTAATT-AT-CACTAGTACTGATTG--CTGTG----------TAA-----T---CATA----------TATATAAAATTTAATATTCATAT-----A----A----G-A-GTTC-TATGAAGGG-------GT
gi|15 : A----------CATA------------------T-----A----ACAT-G-A-ATTA-TATGAAGGG-------GTGTGGATTTTTCAAAAAT-A-------------TCGGT-CTA-C--AATGG---A-----GTTAC--AAATTGACA-TAAAA--TTTGG-TC-----------------------CTCG-GGACCCAC----ATTAG-------AA
gi|16 : taatcatacataaaacttatataG--GGGGAGGGG--------GGATTGGTG----T-TCTGACAAACAGGGTT--GACATT-TCTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----ATCA-ATTT--ATC-C--GT-GTC------TGAATAGGGGT-ATATGAAAT---CAAG-TC
gi|17 : ATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGA---G-----GTTTC--AAATTGACA-TAAAA--TGTAG-TCTA---C-GA-TG-GAGTA-GGGATTCT-GGACCCAC----ATTCG-------ACC-CC---------------CCCTA-----A-ATATTTTTTAGgtaactggggtcat
gi|19 : TC-TGTGAAGGG-------GTGTATATTTTT--AGAAT-ATTTTTATAAAATATCGGT-CTA-C--CATGG---G-----G---------TT---A-CAAAA------G-TCTA---T-GA-TG-GGGTA-GGAGTTTG-GGACCCAC----ATTC
gi|2 : AG--AGGAAGGGG--------GG------GGTGTT-TCTGAAAAAATGAGTTT-GA---T-TTT----G--CAGAC---TTTT-TTCT-ACAAT-GGGGT-T-----AT-A-ATTC--AAC-AA-GT-GT----------ACA------AT-TG----------G-CCT-TATTG------------------------GGG-TTT----GG-TG--TTAC--A---T-AACTGCG--TCAA-T----CA-C---TT-------GTG-T------GCAATTGC-ATTA-----A-C-AGCCCTTGTAG-TCCTTCCAAAAT--T--TAATTTATTC------A-TGATTG--CTGTG----------TGA-----T---CATA----------CATAAAATTTATATTCGCA---T-----A----A----G-ACGTTC-TATGAAGGGTGTACA-ATGTATATTTT-----AAT-A-------------TTGGT-CTA-TCAAATGG---T-----A---C--AAATTGACA-TAAAAA-TTTAT-TCTAA--C-GA-TG-GGGTA-ATGGTTCA-GGACCCAC----ATTC
gi|2 : ataaagacgtttggtgtggtggtggaC-CC---------------CCCC----CCA-ATATTTTTCAGAGTAcatagacgctaaagcaagacctttgctttacgtctatgcattcgaccccccccccccccccccaatatttttcagagtacc
gi|3 : ataaagacgtttggtgtggtggtggaagaggaaggggggggtgtttctgaaaaaatgagtttgattttgcagacttttttctacaatggggttataattcaacaagtgtacaattggccttattggggtttggtgttacataactgcgtcaatcacttgtgtgcaattgcattaacagcccttgtagtccttccaaaatttaatttattcatgattgctgtgtgatcatacataaaatttatattcgcataagacgttctatgaagggtgtacaatgtatattttaatattggtctatcaaatggtacaaattgacataaaaatttattctaacgatggggtaatggttcaggacccacattccatagacgctaaagcaagacctttgctttacgtctatgcattcgacccccccccA-TTTGTAGCAG--GTGGTAGGG--------GG------A----T-TCTGACCAAGGGGGT---GA---T-TTTTTTCGTTCAGAAGAATTTT-GTCT-ACAAT-GGGAAATT----ATCA-ATTT--AAC-CA-GT-GTC------TGAATAGGGAT-ATATGAAAAAGTCAAGTTCT---ATG-T--AA---------------T---GG-TTT----GGTTGTTTTAC--ATTTT-A-CTG-G--TCAATT----CACC---CTACTA--CGTG-T------GCA---GGAA--A-----A-C-AGCC-TA-TAA-TCCTCCTAAAAT--TG-TAATT-AT-C------ACTGATTA--CTGTGAAGCATATTATAAAAAACT---TATATTC-------CATA------------------T-----AT---A----GAA-GCTC-TAT-AAGGGCGGCCAAGTGTATATATTT--AGAAT-A-------------CCAGTCCTAGC--AATGG---GTT---A---CCAAAATTGATATTAAAAATTTTAGTTCTA---C-GATTGTGGCTA-CAG--TAG-GAACCCAT----ATTAG-------ACC-CC---------------CCCCcc
gi|5 : gggtggggtgttaaGGGAGGGGGCCCAATCAGTTTATATTAG--AGGGTGGGA--------GG------G----T-TCTGACAAATGGGGTTT-GA---T-TTTT---G--TAGC----TTTT-ATCT-ACAAT-GAGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CTAG-TCTATAATGGTATAA---------------T--GGG-TTTT---GG-TG--CTAC--A---T-T-CTG-A--TCAA-T----CA-C---CTA-TA--CATG-T------GCA---AG-A--A-----A-C-AGCCTTT-TAA-TCCTTCTAAAAT--TGTTAATC-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATG----------CATA------------------T-----A----A----G-A-ATTC-TATGAAGGG-------GTGTATATTTTT--AAATC-A-------------TCGAT-CTA-C--ATTGG---G-----G---G--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-AGGGTTTG-GGACCCAC----ATTCG-------AGC-CC---------------TCCCAATACCA-ATATTTTCCAGAGTAccctcccttcccac
gi|6 : TT-AA---TATTTT---G--CAGA----TTTTTGTCTTATAAAAGGGGT-TTGTGTAT-A-ATTTTAAAC-C-----------------------------TGAAAA---CAA--------ATG-TACAA---------------T--GGG-CTTTA--GG-TG--TTACC-A---TTA-GCA-G--TCAA-T----CAAC---CTA-TA--GGTA-T------GCT---GG-A--ACGTGAATC-AGTCTTT-TAAATCCTCCTAAAAT--TGT-AACT-AT-T------ACTAATTG--CTGTG----------TAA-----TCAACATACATATT----CATA------------------T-----A----A----G-A-G-TA-TATGAAGGA-------GTATATATTTTT--AGAAT-A-------------TC-GT-CTA-G--AATGG---AAAAATA---C--AAATTAACA-AAAAA--ATCAG-TCTAATTT-GA-AG-GGGTG-CGGTTTCG-CGAACTAC----ATTCGAATTCGAAAC-CCCCACCCCACCCCCA-CCCCAATATTATATTTTTTTCAGAGTAac
gi|7 : gGGGGGTCC------TTTATATTGGCGGGGGTAGGGCATGGTGCGG------G----TGTCTGACAAACCGGGTTTTGA---T-TTTT---G--CAGA----TTT--GTC--ACTAT-GG----------AT-A-GTT---AAC----GT-GTC------TGAA-AAGGGT-A-ATGAAAA-----AG--CTATAATG-C-----------------------GG-TTT----GG-CT--TTACCAA---T-A-CTG-G--TCAA-T----CA-C---TTA-TG--TGCGGT------GCA---GG-A--A-----A-C-GGC-TTT-TAA-TCCTCCTAAAATATTGTTAATC-AT-C------ACTGATTGAGCAGTGG---------TAA-----T---CATAACATAAA---CATA------------------TTTCGTAT---A----G-A-GTTC-TATTGAAAG-------GTGTATATTTTT--TAAATAA-------------TC-GT-CTA-C--AATGGGTTG-----A---C--AAATTGACA-TAAAA--TTTAG-TCGA---CTGA-TG-GGGTG-GGAGT----GGACCCAC----ccc
gi|8 : GGGTTT-AA---T-ATTT---G--CAGA----TTTT-GTCT-ATAAA-GGGGT-GT----AT-A-ATTT--AAC-C-----------------------------TGAAAA---CAA--------ATG-TACAA---------------T--GGGCTTT----GG-TG--TTAC--A---T-A-CAG-G--TCAA-T----CA-C---CTA-TA--GGTA-T------GCT---GG-A--A-----T-C-AGTCTTT-TAA-TCCTCCTAAAAT--TGTTAACT-AT-T------ACTAATTG--CTGTG----------TAA-----T---CATACATACATATTCATA------------------T-----A----A----G-A-GTTA-TATGAAGGA-------GTATATATTTTT--AGAAT-A-------------TCGGT-CTA-G--AATGG---A-----GTTAC--AAATTAACA-AAAAA--ATCAG-TCTA---G-GA-AG-GGGT--GCGGTTCGCGAATACATTCGAATTCG-------AAC-CCCCACCCCACTCCCCACCCCAATAT---ATATTTTTCAGAGTA
gi|9 : TATTAG--GTGGTAGGA--------GG-------------TTAAACTAACGGGATT--GA---T-CTTT---T--CAGA----TT--------------GGGGT-AT----AT-A-ATTT--AAC-CA--T-GTCAGTTTTTATATAGGGGT-ATATGAAAA---TAAA-TCTAC---G-TAC------------------------------------------------T-A-CTG-G--TCAA-T----TA-C---CT---------G-T------GCA---GG-A--A-----A-C-AGC-TTT-TAA-TCCTTCTTAAAT--TGTTAATT-TT-C------ACTTATTG--CTCTG----------TAA-----T---CATA----------CATA------------------------A----ATCTTA-A-ATTCATATGA-----------GT-TCTATTTTA--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----GTTAC--AAATTTACA-TAAAA--TTTAG-TCTA---C-GA-TA-GGATATGGCGTTCG-AGACCAAC----ATGCA-------AACACA---------------TCCCA--ACCA-ATATTTATCAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATGTTTTGCACACTCGGCGTCGCCATATTGAATTACCTAATTATATATGCGTGTCAAAGGTCATAGGGGAAAAAACGACGTTATCATGCACGCAGCCTGTTGATGAATATAAGTTAACGATATATAGCTTTCTTTCAGACTAATGATAAATATATATATTTTAGGGGGTTATATTTTGACATGATTGTTTACTTAATGGAATATTTCCTTTAGGCATATTTTATTTTTTTAAAAGTTCAAAAAACATCTGTCATAATGTGCCTCAAATATAGTTAATGGTACATGTCACATGTGAATTTACGTAAGCCTGCCTATGGTTACTCTTTATATTCTATATTATTATTACTCATTTTCATTAAAACTAATTGCAAATTTTGATTAGTACAAATAAAAATATAG
Unaligned ( gi|10 ): TAGCTTCTTCGGATTTTCATAGTGAAATATAATATATTTTTAGGGGAGTGGGTGATAATTTGTCAGATTCGTTTACATATATTTCCTTAGCATATTTTATTTTTTAAGTTAAAAAAAAAAAACCACTTTGTCATGTCATTGTTAAAACGCTAAGCTGCTTATGTTCTTAATATTTTGATTACCCCCATTCATAAACTAGATGTGCAATTCTGATTGTACCAATTGCAAATTAAAACAAATAGATAAATTAAAAATGATACCCCCTGAGGCGGA
Unaligned ( gi|12 ): CTGTTGATAAATATAAGGATGTAGCTTTTTTCAGACTTTCTAATGAAATATATGTATTTTTAGGGGGGGTGATAATTTGTCCTGATTCTTTTACATAATGAATATTTCCTTTAGCATACTTTATTTTTTCAAAGTTATAAAAAAAAAACATTAATTTTGTCATGTCCCTTAGTTACGCTAACCTGCCCATGGTTACTCTTTATATCTATATTATGAATACCCCATTTCATTAAACCTAATGTGCAAA
Unaligned ( gi|18 ): GATGTTTTGCACACTCGGCGTCGCCAGAATTACCTAATAATGGTCATAGGGGAAAAACGATGTTATCATGCACACAGCCTGTTGATAAATATAAGAATATATA
Unaligned ( gi|20 ): GATGTTTTTGCACACTCGGGCTCGCCATATTGAATTACCTAAT
Alignments
lowQualScore : 2222 11111111 22222222222 11 1111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 2222 222222 1111111 111111 11111 111111 2222222222 11111 999999999999999999999999999999999999999999999999 2222222 2222222222222 4444444444444444 11111 1111111 666666666666666 111
lowQualScore : 55 4444 66 1 88888888 33333333333 5 44 22 777 4 777 55 2222 4 4 4 9999999 8 8 99 6666666666666666666666666666666666666666666666666666666666666666666666666666666 5 2222 5 66 000000 4 4 4 55 4 8888 8 777 4444444 4 111111 777 4 55 00000 4 4 2 4 4 66 0 4 4 222222 66 3333333333 11111 777 000000000000000000000000000000000000000000000000 4 4 7 1 2222222 0 55 3 0000000000000 0 3 3 55 1111111111111111 2 3 888 3 11111 3 3 44 2 3 7777 6666666 5 000000000000000 444 3 5
lowQualScore : .. .... .. . ........ ........... . .. .. ... . ... .. .... . . . ....... . . .. ............................................................................... . .... . .. ...... . . . .. . .... . ... ....... . ...... ... . .. ..... . . . . . .. . . . ...... .. .......... ..... ... ................................................ . . . . ....... . .. . ............. . . . .. ................ . . ... . ..... . . .. . . .... ....... . ............... ... . .
lowQualScore : 88 6666 99 0 11111111 22222222222 0 88 44 000 0 000 55 5555 0 0 0 2222222 0 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5555 0 99 555555 4 4 4 55 0 5555 0 000 7777777 0 555555 000 0 55 00000 0 0 3 0 0 11 8 4 4 888888 11 9999999999 11111 888 666666666666666666666666666666666666666666666666 0 0 3 4 3333333 7 00 6 0000000000000 5 6 6 00 6666666666666666 0 6 888 6 11111 6 6 00 0 6 7777 2222222 0 666666666666666 666 0 7
consensus : GGGGGGGGGCCCACTCA-TTTATATTAG--GGGGNGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAATG-TACAA---------------T--GGG-TTT----GG-TG--TTAC--A---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATA----------CATA------------------T-----A----A----G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---C--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
Reference ( family-1499 ) : GGGGGGGGGCCCACTCA-TTTATATTAG--GGGGNGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAATG-TACAA---------------T--GGG-TTT----GG-TG--TTAC--A---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATA----------CATA------------------T-----A----A----G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---C--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
gi|1 : GGGGGGGGACTCACTC----TATATTAT--GGGGGGGAG--------GG------G----T-T--GACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTT--
gi|11 : atgttttgcacactcggcgtcgccatattgaattacctaattatatatgcgtgtcaaaggtcataggggaaaaaataacgttatcaagcacgcagcctgttgataaatataaggatatatagctttctttcagactttctaatgatatatatatttttgggtgggtgggtgatattttgacatgattcgtttacattaaatagatatttccttcagcatattttattttttgaaagttcaaaaaacatttgccatgccatgannnnnnnnnnnnnnnnnnnnnnnnnaccagatcaaataggcctatagggtctaccttacacagttaatttggtacagctatgctagcatgccatatttctggttacttcttttatgtcatattcttgtatgataggttactttcatccattcattaatattgcactcctgattcgtatataaactaataatcgacgccatctgccctgaaagggggggaGGGGGGGGACTCACTC----TATATTAT--GGGGGGGAG--------GG------G----T-T--GACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTTT-GACGCAAGTAGTC------TGAATATGTGTGATAT---AG---TAAG-TTTG-AATA-TACAAGTTTTCTATTTTTCATCGGGG-TTTCTTAGG-TG--TTACATA---T-A-CTG-GAATCAA-TGTACCA-CATTTTA-TT--TTTG-TGCTTTGGCA---GG-A--A-----A-CTAGCC-TT-TAA-TCATACTAtgacgcaag
gi|13 : gga---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CCTG-T------GCA---GG-A--A-----A-C-ATCCTTT-TAA-TCCTCTAAAAA----ACTAATT-AT-C------ACTGATTG--CTTTG----------TAA-----T---CATA----------CATA------------------A-----ATCTTA----T-A--TTCATAT-AAGAG-------TTCTAT-TTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---T------------TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGATTCG-GAACCCAC----ATTCG-------AAC-CC---------------CC----TACCA-ATATTTGTCAGAGTAca
gi|14 : c--TCAA-T----CA-C---TTG-TGTGCGTG-T------GCA---GG-A--A-----A-C-AGGCTTT-GAA-TCTTCCTAAAAT--TGTTAATT-AT-CACTAGTACTGATTG--CTGTG----------TAA-----T---CATA----------TATATAAAATTTAATATTCATAT-----A----A----G-A-GTTC-TATGAAGGG-------GT
gi|15 : A----------CATA------------------T-----A----ACAT-G-A-ATTA-TATGAAGGG-------GTGTGGATTTTTCAAAAAT-A-------------TCGGT-CTA-C--AATGG---A-----GTTAC--AAATTGACA-TAAAA--TTTGG-TC-----------------------CTCG-GGACCCAC----ATTAG-------AA
gi|16 : taatcatacataaaacttatataG--GGGGAGGGG--------GGATTGGTG----T-TCTGACAAACAGGGTT--GACATT-TCTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----ATCA-ATTT--ATC-C--GT-GTC------TGAATAGGGGT-ATATGAAAT---CAAG-TC
gi|17 : ATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGA---G-----GTTTC--AAATTGACA-TAAAA--TGTAG-TCTA---C-GA-TG-GAGTA-GGGATTCT-GGACCCAC----ATTCG-------ACC-CC---------------CCCTA-----A-ATATTTTTTAGgtaactggggtcat
gi|19 : TC-TGTGAAGGG-------GTGTATATTTTT--AGAAT-ATTTTTATAAAATATCGGT-CTA-C--CATGG---G-----G---------TT---A-CAAAA------G-TCTA---T-GA-TG-GGGTA-GGAGTTTG-GGACCCAC----ATTC
gi|2 : AG--AGGAAGGGG--------GG------GGTGTT-TCTGAAAAAATGAGTTT-GA---T-TTT----G--CAGAC---TTTT-TTCT-ACAAT-GGGGT-T-----AT-A-ATTC--AAC-AA-GT-GT----------ACA------AT-TG----------G-CCT-TATTG------------------------GGG-TTT----GG-TG--TTAC--A---T-AACTGCG--TCAA-T----CA-C---TT-------GTG-T------GCAATTGC-ATTA-----A-C-AGCCCTTGTAG-TCCTTCCAAAAT--T--TAATTTATTC------A-TGATTG--CTGTG----------TGA-----T---CATA----------CATAAAATTTATATTCGCA---T-----A----A----G-ACGTTC-TATGAAGGGTGTACA-ATGTATATTTT-----AAT-A-------------TTGGT-CTA-TCAAATGG---T-----A---C--AAATTGACA-TAAAAA-TTTAT-TCTAA--C-GA-TG-GGGTA-ATGGTTCA-GGACCCAC----ATTC
gi|2 : ataaagacgtttggtgtggtggtggaC-CC---------------CCCC----CCA-ATATTTTTCAGAGTAcatagacgctaaagcaagacctttgctttacgtctatgcattcgaccccccccccccccccccaatatttttcagagtacc
gi|3 : ataaagacgtttggtgtggtggtggaagaggaaggggggggtgtttctgaaaaaatgagtttgattttgcagacttttttctacaatggggttataattcaacaagtgtacaattggccttattggggtttggtgttacataactgcgtcaatcacttgtgtgcaattgcattaacagcccttgtagtccttccaaaatttaatttattcatgattgctgtgtgatcatacataaaatttatattcgcataagacgttctatgaagggtgtacaatgtatattttaatattggtctatcaaatggtacaaattgacataaaaatttattctaacgatggggtaatggttcaggacccacattccatagacgctaaagcaagacctttgctttacgtctatgcattcgacccccccccA-TTTGTAGCAG--GTGGTAGGG--------GG------A----T-TCTGACCAAGGGGGT---GA---T-TTTTTTCGTTCAGAAGAATTTT-GTCT-ACAAT-GGGAAATT----ATCA-ATTT--AAC-CA-GT-GTC------TGAATAGGGAT-ATATGAAAAAGTCAAGTTCT---ATG-T--AA---------------T---GG-TTT----GGTTGTTTTAC--ATTTT-A-CTG-G--TCAATT----CACC---CTACTA--CGTG-T------GCA---GGAA--A-----A-C-AGCC-TA-TAA-TCCTCCTAAAAT--TG-TAATT-AT-C------ACTGATTA--CTGTGAAGCATATTATAAAAAACT---TATATTC-------CATA------------------T-----AT---A----GAA-GCTC-TAT-AAGGGCGGCCAAGTGTATATATTT--AGAAT-A-------------CCAGTCCTAGC--AATGG---GTT---A---CCAAAATTGATATTAAAAATTTTAGTTCTA---C-GATTGTGGCTA-CAG--TAG-GAACCCAT----ATTAG-------ACC-CC---------------CCCCcc
gi|5 : gggtggggtgttaaGGGAGGGGGCCCAATCAGTTTATATTAG--AGGGTGGGA--------GG------G----T-TCTGACAAATGGGGTTT-GA---T-TTTT---G--TAGC----TTTT-ATCT-ACAAT-GAGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CTAG-TCTATAATGGTATAA---------------T--GGG-TTTT---GG-TG--CTAC--A---T-T-CTG-A--TCAA-T----CA-C---CTA-TA--CATG-T------GCA---AG-A--A-----A-C-AGCCTTT-TAA-TCCTTCTAAAAT--TGTTAATC-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATG----------CATA------------------T-----A----A----G-A-ATTC-TATGAAGGG-------GTGTATATTTTT--AAATC-A-------------TCGAT-CTA-C--ATTGG---G-----G---G--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-AGGGTTTG-GGACCCAC----ATTCG-------AGC-CC---------------TCCCAATACCA-ATATTTTCCAGAGTAccctcccttcccac
gi|6 : TT-AA---TATTTT---G--CAGA----TTTTTGTCTTATAAAAGGGGT-TTGTGTAT-A-ATTTTAAAC-C-----------------------------TGAAAA---CAA--------ATG-TACAA---------------T--GGG-CTTTA--GG-TG--TTACC-A---TTA-GCA-G--TCAA-T----CAAC---CTA-TA--GGTA-T------GCT---GG-A--ACGTGAATC-AGTCTTT-TAAATCCTCCTAAAAT--TGT-AACT-AT-T------ACTAATTG--CTGTG----------TAA-----TCAACATACATATT----CATA------------------T-----A----A----G-A-G-TA-TATGAAGGA-------GTATATATTTTT--AGAAT-A-------------TC-GT-CTA-G--AATGG---AAAAATA---C--AAATTAACA-AAAAA--ATCAG-TCTAATTT-GA-AG-GGGTG-CGGTTTCG-CGAACTAC----ATTCGAATTCGAAAC-CCCCACCCCACCCCCA-CCCCAATATTATATTTTTTTCAGAGTAac
gi|7 : gGGGGGTCC------TTTATATTGGCGGGGGTAGGGCATGGTGCGG------G----TGTCTGACAAACCGGGTTTTGA---T-TTTT---G--CAGA----TTT--GTC--ACTAT-GG----------AT-A-GTT---AAC----GT-GTC------TGAA-AAGGGT-A-ATGAAAA-----AG--CTATAATG-C-----------------------GG-TTT----GG-CT--TTACCAA---T-A-CTG-G--TCAA-T----CA-C---TTA-TG--TGCGGT------GCA---GG-A--A-----A-C-GGC-TTT-TAA-TCCTCCTAAAATATTGTTAATC-AT-C------ACTGATTGAGCAGTGG---------TAA-----T---CATAACATAAA---CATA------------------TTTCGTAT---A----G-A-GTTC-TATTGAAAG-------GTGTATATTTTT--TAAATAA-------------TC-GT-CTA-C--AATGGGTTG-----A---C--AAATTGACA-TAAAA--TTTAG-TCGA---CTGA-TG-GGGTG-GGAGT----GGACCCAC----ccc
gi|8 : GGGTTT-AA---T-ATTT---G--CAGA----TTTT-GTCT-ATAAA-GGGGT-GT----AT-A-ATTT--AAC-C-----------------------------TGAAAA---CAA--------ATG-TACAA---------------T--GGGCTTT----GG-TG--TTAC--A---T-A-CAG-G--TCAA-T----CA-C---CTA-TA--GGTA-T------GCT---GG-A--A-----T-C-AGTCTTT-TAA-TCCTCCTAAAAT--TGTTAACT-AT-T------ACTAATTG--CTGTG----------TAA-----T---CATACATACATATTCATA------------------T-----A----A----G-A-GTTA-TATGAAGGA-------GTATATATTTTT--AGAAT-A-------------TCGGT-CTA-G--AATGG---A-----GTTAC--AAATTAACA-AAAAA--ATCAG-TCTA---G-GA-AG-GGGT--GCGGTTCGCGAATACATTCGAATTCG-------AAC-CCCCACCCCACTCCCCACCCCAATAT---ATATTTTTCAGAGTA
gi|9 : TATTAG--GTGGTAGGA--------GG-------------TTAAACTAACGGGATT--GA---T-CTTT---T--CAGA----TT--------------GGGGT-AT----AT-A-ATTT--AAC-CA--T-GTCAGTTTTTATATAGGGGT-ATATGAAAA---TAAA-TCTAC---G-TAC------------------------------------------------T-A-CTG-G--TCAA-T----TA-C---CT---------G-T------GCA---GG-A--A-----A-C-AGC-TTT-TAA-TCCTTCTTAAAT--TGTTAATT-TT-C------ACTTATTG--CTCTG----------TAA-----T---CATA----------CATA------------------------A----ATCTTA-A-ATTCATATGA-----------GT-TCTATTTTA--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----GTTAC--AAATTTACA-TAAAA--TTTAG-TCTA---C-GA-TA-GGATATGGCGTTCG-AGACCAAC----ATGCA-------AACACA---------------TCCCA--ACCA-ATATTTATCAc
blockSeqs : AC AGTT CG G CATGGTGC ATTGGTG G CT TT CAT A TTC TT AGAA T T A TTGTGT C T TA CAGTGTCTGAATAGGGGTATATGAAAACTAGTCTATAATGGTATAATG C TA T TT ATTT T A C . T . C . GTGTGC G . ATT A TT CGTGA T . T G A AT T T ACTAGT AG AAGCATATTA AAAAC CAA TATATAAAATTTAATATTCATATAA A C A G CGGCCAA CA A TTTTTATAAAATA C G CA AAAAATAC G T ATT T ATTT T T AT A C TCGA AATTCGA A CCACCCCACTCCCCA AAT C T
blockSeqs : AA ATT . A . GGTGT . CT A . . . . C . . . ATT C . T CAGTGTCTGAATAGGGATATATGAAAAAGTCAAGTTCTATGTAAT . T . . CAA . . . . . . A . ACTAC . . . . . . . . T . . . . . . . G . . CATAAAATTTATATTCGCATAA . . . G TGTACA . . . . . . GTTACCA G . AT . AC . . A G . . . . CCACCCCACCCCCA AAT C .
blockSeqs : . TT . A . G . CT T . . . . . . . . TT . . . CATGTCAGTTTTTATATAGGGGTATATGAAAATAAATCTACGTAC . . . . CA . . . . . . . . ATGC . . . . . . . . C . . . . . . . . . . ACATAAACATATTTCGTATA . . . G . . . . . . . AGTTAC G . T . CT . . A G . . . . . AAT T .
blockSeqs : . . T . A . CT T . . . . . . . . TT . . . GTGTCTGAAAAGGGTAATGAAAAAGCTATAATGC . . . . A . . . . . . . . ATAC . . . . . . . . T . . . . . . . . . . CATACATATTCATATAA . . . G . . . . . . . GGTTTC G . T . C . . A G . . . . . A C .
blockSeqs : . T . G . CT T . . . . . . . . TT . . . AAGTGTACAATTGGCCTTATTGG . . . . A . . . . . . . . ATAG . . . . . . . . T . . . . . . . . . . CATATTCATATAA . . . G . . . . . . . GTTGAC G . T . T . . A T . . . . . A . .
blockSeqs : . T . G . TA T . . . . . . . . GT . . . CTGAAAACAAATGTACAATG . . . . A . . . . . . . . ATGT . . . . . . . . T . . . . . . . . . . TTCCATATATA . . . G . . . . . . . AGTTAC A . A . C . . A G . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . AT . . . CTGAAAACAAATGTACAATG . . . . . . . . . . . . . ATAG . . . . . . . . T . . . . . . . . . . CATATAACAT . . . T . . . . . . . GGTTAC G . T . C . . G G . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . CATAAATCTT . . . G . . . . . . . TAC A . A . G . . G G . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CATATAA . . . G . . . . . . . GGG T . T . C . . . . . .
blockSeqs : . . . . . . . . . GG . . . . . . . . . . .
blockSeqCons : TT** CT **** A***** ** **** *** ****** CATATATATTCGTATAA******************************* GGTTAC********** AAT
originalCons : GGGGGGGGGCCCACTCA-TTTATATTAG--GGGGNGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAATG-TACAA---------------T--GGG-TTT----GG-TG--TTAC--A---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATA----------CATA------------------T-----A----A----G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGG---G-----G---C--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
finalCons : GGGGGGGGGCCCACTCTT--TATATTAG--GGGGNGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAATG-TACAA---------------T--GGG-TTT----GG-TG--TTACA-----T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG----------TAA-----T---CATACATATATATTCGTATAA-------------------------------G-A-GTTC-TATGAAGGG-------GTGTATATTTTT--AGAAT-A-------------TCGGT-CTA-C--AATGGGGTTAC----------AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATGTTTTGCACACTCGGCGTCGCCATATTGAATTACCTAATTATATATGCGTGTCAAAGGTCATAGGGGAAAAAACGACGTTATCATGCACGCAGCCTGTTGATGAATATAAGTTAACGATATATAGCTTTCTTTCAGACTAATGATAAATATATATATTTTAGGGGGTTATATTTTGACATGATTGTTTACTTAATGGAATATTTCCTTTAGGCATATTTTATTTTTTTAAAAGTTCAAAAAACATCTGTCATAATGTGCCTCAAATATAGTTAATGGTACATGTCACATGTGAATTTACGTAAGCCTGCCTATGGTTACTCTTTATATTCTATATTATTATTACTCATTTTCATTAAAACTAATTGCAAATTTTGATTAGTACAAATAAAAATATAG
Unaligned ( gi|10 ): TAGCTTCTTCGGATTTTCATAGTGAAATATAATATATTTTTAGGGGAGTGGGTGATAATTTGTCAGATTCGTTTACATATATTTCCTTAGCATATTTTATTTTTTAAGTTAAAAAAAAAAAACCACTTTGTCATGTCATTGTTAAAACGCTAAGCTGCTTATGTTCTTAATATTTTGATTACCCCCATTCATAAACTAGATGTGCAATTCTGATTGTACCAATTGCAAATTAAAACAAATAGATAAATTAAAAATGATACCCCCTGAGGCGGA
Unaligned ( gi|12 ): CTGTTGATAAATATAAGGATGTAGCTTTTTTCAGACTTTCTAATGAAATATATGTATTTTTAGGGGGGGTGATAATTTGTCCTGATTCTTTTACATAATGAATATTTCCTTTAGCATACTTTATTTTTTCAAAGTTATAAAAAAAAAACATTAATTTTGTCATGTCCCTTAGTTACGCTAACCTGCCCATGGTTACTCTTTATATCTATATTATGAATACCCCATTTCATTAAACCTAATGTGCAAA
Unaligned ( gi|18 ): GATGTTTTGCACACTCGGCGTCGCCAGAATTACCTAATAATGGTCATAGGGGAAAAACGATGTTATCATGCACACAGCCTGTTGATAAATATAAGAATATATA
Unaligned ( gi|20 ): GATGTTTTTGCACACTCGGGCTCGCCATATTGAATTACCTAAT
Alignments
lowQualScore : 11 1111 11111111 22222222222 11 1111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1111 222222 1111111 111111 11111 111111 6666666666666666 11111 111111 2222222 2222222222222 11111 1111111 666666666666666 111
lowQualScore : 33 55 7777 66 1 88888888 33333333333 5 1 22 777 4 777 55 2222 4 4 4 9999999 8 8 99 6666666666666666666666666666666666666666666666666666666666666666666666666666666 0 7777 5 66 000000 4 4 4 55 4 8888 8 777 4444444 4 111111 777 4 55 00000 4 4 2 4 4 66 0 4 4 222222 66 4 8 3333333333333333 00000 111111 777 4 5 2222222 55 3333333333333 3 3 55 55 55 3 88 3 11111 3 3 44 2 3 7777 6666666 5 000000000000000 444 3 5
lowQualScore : .. .. .... .. . ........ ........... . . .. ... . ... .. .... . . . ....... . . .. ............................................................................... . .... . .. ...... . . . .. . .... . ... ....... . ...... ... . .. ..... . . . . . .. . . . ...... .. . . ................ ..... ...... ... . . ....... .. ............. . . .. .. .. . .. . ..... . . .. . . .... ....... . ............... ... . .
lowQualScore : 88 88 4444 99 0 11111111 22222222222 0 4 44 000 0 000 55 5555 0 0 0 2222222 0 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5555 0 99 555555 4 4 4 55 0 5555 0 000 7777777 0 555555 000 0 55 00000 0 0 3 0 0 11 8 4 4 888888 11 0 0 5555555555555555 00000 222222 000 0 9 3333333 00 6666666666666 6 6 00 00 00 6 66 6 11111 6 6 00 0 6 7777 2222222 0 666666666666666 666 0 7
consensus : GGGGGGGGG--CCCACTC--TTTATATTAG--GGGGNGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAAT-GTACAA---------------T--GGG-TTT----GG-TG--TTAC--A---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG-TAATCATA-CATAAA-----T--------AT-----ATT-C---ATATAA---GA-GTTCTATGAAGGG-------GTGTATATTTTT--AGAATA-------------TCGGT-CTA-C--AATGG--GGTTAC--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
Reference ( family-1499 ) : GGGGGGGGG--CCCACTC--TTTATATTAG--GGGGNGGGG--------GG------G----T-TCTGACAAACGGGGTTT-GA---T-TTTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CAAG-TCTATAAT-GTACAA---------------T--GGG-TTT----GG-TG--TTAC--A---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CGTG-T------GCA---GG-A--A-----A-C-AGCCTTT-TAA-TCCTCCTAAAAT--TGTTAATT-AT-C------ACTGATTG--CTGTG-TAATCATA-CATA-------T--------AT-----ATT-C---GTATAA---GA-GTTCTATGAAGGG-------GTGTATATTTTT--AGAATA-------------TCGGT-CTA-C--AATGG--GGTTAC--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGGTTCG-GGACCCAC----ATTCG-------AAC-CC---------------CCCCAATACCA-ATATTTTTCAGAGTA
gi|1 : GAGGGGGGGGACTCACTC----TATATTAT--GGGGGGGAG--------GG------G----T---TGACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTT--
gi|11 : atgttttgcacactcggcgtcgccatattgaattacctaattatatatgcgtgtcaaaggtcataggggaaaaaataacgttatcaagcacgcagcctgttgataaatataaggatatatagctttctttcagactttctaatgatatatatatttttgggtgggtgggtgatattttgacatgattcgtttacattaaatagatatttccttcagcatattttattttttgaaagttcaaaaaacatttgccatgccatgannnnnnnnnnnnnnnnnnnnnnnnnaccagatcaaataggcctatagggtctaccttacacagttaatttggtacagctatgctagcatgccatatttctggttacttcttttatgtcatattcttgtatgataggttactttcatccattcattaatattgcactcctgattcgtatataaactaataatcgacgccatctgccctgaaaggggggGGGGGGGGA--CTCACTC--T--ATATTAT--GGGGGGGAG--------GG------G----T-T--GACAAACGGGGTTA-TA---T-TTTT---G--CAGA----TTTT-GTCT-ACGAT-GGGGT-TT----AT-ATATTTT-GACGCAAGTAGTC------TGAATATGTGTGATAT---AG---TAAG-TTTG-AAT-ATACAAGTTTTCTATTTTTCATCGGGG-TTTCTTAGG-TG--TTACATA---T-A-CTG-GAATCAA-TGTACCA-CATTTTA-TT--TTTG-TGCTTTGGCA---GG-A--A-----A-CTAGCC-TT-TAA-TCATACTAtgacgcaag
gi|13 : gga---T-A-CTG-G--TCAA-T----CA-C---CTA-TG--CCTG-T------GCA---GG-A--A-----A-C-ATCCTTT-TAA-TCCTCTAAAAA----ACTAATT-AT-C------ACTGATTG--CTTTG-TAATCATA-CATAAATCT--T--------AT-----ATT-C---ATATAA---GA-GTTCTAT--------------------TTTTT--AGAATA-------------TCGGT-CTA-C--AATGG--GGT---------------TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-GGGATTCG-GAACCCAC----ATTCG-------AAC-CC---------------CC----TACCA-ATATTTGTCAGAGTAca
gi|14 : c--TCAA-T----CA-C---TTG-TGTGCGTG-T------GCA---GG-A--A-----A-C-AGGCTTT-GAA-TCTTCCTAAAAT--TGTTAATT-AT-CACTAGTACTGATTG--CTGTG-TAATCATA-TATA-------TAAAATTTAAT-----ATT-C---ATATAA---GA-GTTCTATGAAGGG-------GT
gi|15 : -TAATCATA-CATAAAACT--T--------AT-----ATAAC---ATATAACATGA-ATTATATGAAGGG-------GTGTGGATTTTTCAAAAATA-------------TCGGT-CTA-C--AATGG--AGTTAC--AAATTGACA-TAAAA--TTTGG-TC-----------------------CTCG-GGACCCAC----ATTAG-------AA
gi|16 : G--GGGGAGGGG--------GGATTGGTG----T-TCTGACAAACAGGGTT--GACATT-TCTT---G--CAGA----TTTT-GTCT-ACAAT-GGGGT-TT----ATCA-ATTT--ATC-C--GT-GTC------TGAATAGGGGT-ATATGAAAT---CAAG-TC
gi|17 : ATATTTTT--AGAATA-------------TCGGT-CTA-C--AATGA--GGTTTC--AAATTGACA-TAAAA--TGTAG-TCTA---C-GA-TG-GAGTA-GGGATTCT-GGACCCAC----ATTCG-------ACC-CC---------------CCCTA-----A-ATATTTTTTAGgtaactggggtcat
gi|19 : TCTGTGAAGGG-------GTGTATATTTTT--AGAATATTTTTATAAAATATCGGT-CTA-C--CATGG--GGTTAC--AAA-----------------AG-TCTA---T-GA-TG-GGGTA-GGAGTTTG-GGACCCAC----ATTC
gi|2 : AG--AGGAAGGGG--------GG------GGTGTT-TCTGAAAAAATGAGTTT-GA---T-TTT----G--CAGAC---TTTT-TTCT-ACAAT-GGGGT-T-----AT-A-ATTC--AAC-AA-GT-GT----------ACA------AT-TG----------G-CCT-TATT-G-----------------------GGG-TTT----GG-TG--TTAC--A---T-AACTGCG--TCAA-T----CA-C---TT-------GTG-T------GCAATTGC-ATTA-----A-C-AGCCCTTGTAG-TCCTTCCAAAAT--T--TAATTTATTC------A-TGATTG--CTGTG-TGATCATA-CATAAAATT--T--------AT-----ATT-C---GCATAA---GACGTTCTATGAAGGGTGTACA-ATGTATATTTT-----AATA-------------TTGGT-CTA-TCAAATGG-----TAC--AAATTGACA-TAAAAA-TTTAT-TCTAA--C-GA-TG-GGGTA-ATGGTTCA-GGACCCAC----ATTC
gi|2 : ataaagacgtttggtgtggtggtggaC-CC---------------CCCC----CCA-ATATTTTTCAGAGTAcatagacgctaaagcaagacctttgctttacgtctatgcattcgaccccccccccccccccccaatatttttcagagtacc
gi|3 : ataaagacgtttggtgtggtggtggaagaggaaggggggggtgtttctgaaaaaatgagtttgattttgcagacttttttctacaatggggttataattcaacaagtgtacaattggccttattggggtttggtgttacataactgcgtcaatcacttgtgtgcaattgcattaacagcccttgtagtccttccaaaatttaatttattcatgattgctgtgtgatcatacataaaatttatattcgcataagacgttctatgaagggtgtacaatgtatattttaatattggtctatcaaatggtacaaattgacataaaaatttattctaacgatggggtaatggttcaggacccacattccatagacgctaaagcaagacctttgctttacgtctatgcattcgaccccccccc--TTTGTAGCAG--GTGGTAGGG--------GG------A----T-TCTGACCAAGGGGGT---GA---T-TTTTTTCGTTCAGAAGAATTTT-GTCT-ACAAT-GGGAAATT----ATCA-ATTT--AAC-CA-GT-GTC------TGAATAGGGAT-ATATGAAAAAGTCAAGTTCT---AT-GT--AA---------------T---GG-TTT----GGTTGTTTTAC--ATTTT-A-CTG-G--TCAATT----CACC---CTACTA--CGTG-T------GCA---GGAA--A-----A-C-AGCC-TA-TAA-TCCTCCTAAAAT--TG-TAATT-AT-C------ACTGATTA--CTGTG--AAGCATATTATAAAAAACTT--------AT-----ATT-CCATATATAG---AA-GCTCTAT-AAGGGCGGCCAAGTGTATATATTT--AGAATA-------------CCAGTCCTAGC--AAT-G--GGTTACCAAAATTGATATTAAAAATTTTAGTTCTA---C-GATTGTGGCTA-CAG--TAG-GAACCCAT----ATTAG-------ACC-CC---------------CCCCcc
gi|5 : gggtggggtgttaaaGGGAGGGGG--CCCAATCAGTTTATATTAG--AGGGTGGGA--------GG------G----T-TCTGACAAATGGGGTTT-GA---T-TTTT---G--TAGC----TTTT-ATCT-ACAAT-GAGGT-TT----AT-A-ATTT--AAC-CA-GT-GTC------TGAATAGGGGT-ATATGAAAA---CTAG-TCTATAATGGTATAA---------------T--GGGTTTT----GG-TG--CTAC--A---T-T-CTG-A--TCAA-T----CA-C---CTA-TA--CATG-T------GCA---AG-A--A-----A-C-AGCCTTT-TAA-TCCTTCTAAAAT--TGTTAATC-AT-C------ACTGATTG--CTGTG-TAATCATG-CA----------------------------------TATAA---GA-ATTCTATGAAGGG-------GTGTATATTTTT--AAATCA-------------TCGAT-CTA-C--ATTGG--GG---G--AAATTGACA-TAAAA--TTTAG-TCTA---C-GA-TG-GGGTA-AGGGTTTG-GGACCCAC----ATTCG-------AGC-CC---------------TCCCAATACCA-ATATTTTCCAGAGTAccctcccttcccac
gi|6 : TT-AA---TATTTT---G--CAGA----TTTTTGTCTTATAAAAGGGGT-TTGTGTAT-A-ATTTTAAAC-C-----------------------------TGAAAA---CAA--------AT-GTACAA---------------T--GGG-CTTTA--GG-TG--TTACC-A---TTA-GCA-G--TCAA-T----CAAC---CTA-TA--GGTA-T------GCT---GG-A--ACGTGAATC-AGTCTTT-TAAATCCTCCTAAAAT--TGT-AACT-AT-T------ACTAATTG--CTGTG-TAATCA-A-CATA-------C--------AT-----ATT-C---ATATAA---GA-G-TATATGAAGGA-------GTATATATTTTT--AGAATA-------------TC-GT-CTA-G--AATGGAAAAATAC--AAATTAACA-AAAAA--ATCAG-TCTAATTT-GA-AG-GGGTG-CGGTTTCG-CGAACTAC----ATTCGAATTCGAAAC-CCCCACCCCACCCCCA-CCCCAATATTATATTTTTTTCAGAGTAac
gi|7 : gGGGGG--TCC------TTTATATTGGCGGGGGTAGGGCATGGTGCGG------G----TGTCTGACAAACCGGGTTTTGA---T-TTTT---G--CAGA----TTT--GTC--ACTAT-GG----------AT-A-GTT---AAC----GT-GTC------TGAA-AAGGGT-A-ATGAAAA-----AG--CTATAAT-GC-----------------------GG-TTT----GG-CT--TTACCAA---T-A-CTG-G--TCAA-T----CA-C---TTA-TG--TGCGGT------GCA---GG-A--A-----A-C-GGC-TTT-TAA-TCCTCCTAAAATATTGTTAATC-AT-C------ACTGATTGAGCAGTGGTAATCATAACATAAA-----C--------AT-----ATTTC---GTATA----GA-GTTCTATTGAAAG-------GTGTATATTTTT--TAAATAA------------TCG-T-CTA-C--AATGG--GTTGAC--AAATTGACA-TAAAA--TTTAG-TCGA---CTGA-TG-GGGTG-GGAGT----GGACCCAC----ccc
gi|8 : GGGTTT-AA---T-ATTT---G--CAGA----TTTT-GTCT-ATAAA-GGGGT-GT----AT-A-ATTT--AAC-C-----------------------------TGAAAA---CAA--------AT-GTACAA---------------T--GGGCTTT----GG-TG--TTAC--A---T-A-CAG-G--TCAA-T----CA-C---CTA-TA--GGTA-T------GCT---GG-A--A-----T-C-AGTCTTT-TAA-TCCTCCTAAAAT--TGTTAACT-AT-T------ACTAATTG--CTGTG-TAATCATA-CATA-------C--------AT-----ATT-C---ATATAA---GA-GTTATATGAAGGA-------GTATATATTTTT--AGAATA-------------TCGGT-CTA-G--AATGG--AGTTAC--AAATTAACA-AAAAA--ATCAG-TCTA---G-GA-AG-GGGT--GCGGTTCGCGAATACATTCGAATTCG-------AAC-CCCCACCCCACTCCCCACCCCAATAT---ATATTTTTCAGAGTA
gi|9 : TATTAG--GTGGTAGGA--------GG-------------TTAAACTAACGGGATT--GA---T-CTTT---T--CAGA----TT--------------GGGGT-AT----AT-A-ATTT--AAC-CA--T-GTCAGTTTTTATATAGGGGT-ATATGAAAA---TAAA-TCTAC----GTAC------------------------------------------------T-A-CTG-G--TCAA-T----TA-C---CT---------G-T------GCA---GG-A--A-----A-C-AGC-TTT-TAA-TCCTTCTTAAAT--TGTTAATT-TT-C------ACTTATTG--CTCTG-TAATCATA-CATA-------A--------ATCTTAAATT-C---ATAT-----GA-GTTCTAT---------------------TTTA--AGAATA-------------TCGGT-CTA-C--AATGG--GGTTAC--AAATTTACA-TAAAA--TTTAG-TCTA---C-GA-TA-GGATATGGCGTTCG-AGACCAAC----ATGCA-------AACACA---------------TCCCA--ACCA-ATATTTATCAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): ATGTTTTGCACACTCGGCGTCGCCATATTGAATTACCTAATTATATATGCGTGTCAAAGGTCATAGGGGAAAAAACGACGTTATCATGCACGCAGCCTGTTGATGAATATAAGTTAACGATATATAGCTTTCTTTCAGACTAATGATAAATATATATATTTTAGGGGGTTATATTTTGACATGATTGTTTACTTAATGGAATATTTCCTTTAGGCATATTTTATTTTTTTAAAAGTTCAAAAAACATCTGTCATAATGTGCCTCAAATATAGTTAATGGTACATGTCACATGTGAATTTACGTAAGCCTGCCTATGGTTACTCTTTATATTCTATATTATTATTACTCATTTTCATTAAAACTAATTGCAAATTTTGATTAGTACAAATAAAAATATAG
Unaligned ( gi|10 ): TAGCTTCTTCGGATTTTCATAGTGAAATATAATATATTTTTAGGGGAGTGGGTGATAATTTGTCAGATTCGTTTACATATATTTCCTTAGCATATTTTATTTTTTAAGTTAAAAAAAAAAAACCACTTTGTCATGTCATTGTTAAAACGCTAAGCTGCTTATGTTCTTAATATTTTGATTACCCCCATTCATAAACTAGATGTGCAATTCTGATTGTACCAATTGCAAATTAAAACAAATAGATAAATTAAAAATGATACCCCCTGAGGCGGA
Unaligned ( gi|12 ): CTGTTGATAAATATAAGGATGTAGCTTTTTTCAGACTTTCTAATGAAATATATGTATTTTTAGGGGGGGTGATAATTTGTCCTGATTCTTTTACATAATGAATATTTCCTTTAGCATACTTTATTTTTTCAAAGTTATAAAAAAAAAACATTAATTTTGTCATGTCCCTTAGTTACGCTAACCTGCCCATGGTTACTCTTTATATCTATATTATGAATACCCCATTTCATTAAACCTAATGTGCAAA
Unaligned ( gi|18 ): GATGTTTTGCACACTCGGCGTCGCCAGAATTACCTAATAATGGTCATAGGGGAAAAACGATGTTATCATGCACACAGCCTGTTGATAAATATAAGAATATATA
Unaligned ( gi|20 ): GATGTTTTTGCACACTCGGGCTCGCCATATTGAATTACCTAAT