lowQualScore : 1111111111111 1111111111111 111111111111
lowQualScore : 1 22222222222222 1111111 1111 111 1111 1111111 1111111111 11 2222222222 1111111 99999999999999999999999999999999999999999999 1 2 1 222 4444 2 22 33333 1 4 1 1 6666 3333333333333 4 1 4 1 1 88888888 1 2222 33333 7777777777777777 55555 1 1 333 222 1 22 4444 1 1 444444 22 222 11 1111111111111 1 55555 333333333333 1 555555 5555555 8888 777 1 4 4 4 4 5555555
lowQualScore : 6 1 5 22222222222222 4444444 4 6 8 66 3 3333 777 5 66 5 5 5555 4 4 4 2222222 4 8888 4 55 7777777777 66 5 88 5 66 1 66 44 5 6 5 5 5 5 5 5 8888888888 6 2 4444444 6 77777777777777777777777777777777777777777777 4 6 7 6 6 5 3 6 6 0 5 222 6 6 9999 6 4 0 11 99999 4 2 7 6 6 0 6 5 5 2222 6 7777777777777 0 5 6 6 0 5 5 4 77777777 6 5 2 3 9999 44444 9999999999999999 6 22222 5 5 6 111 111 7 4 4 4 11 6 1111 5 5 2 666666 66 999 88 0000000000000 7 88888 333333333333 7 6 999999 6 8888888 6 6 6666 222 5 6 6 0 6 0 0 0 0000000
lowQualScore : . . . .............. ....... . . . .. . .... ... . .. . . .... . . . ....... . .... . .. .......... .. . .. . .. . .. .. . . . . . . . . .......... . . ....... . ............................................ . . . . . . . . . . . ... . . .... . . . .. ..... . . . . . . . . . .... . ............. . . . . . . . . ........ . . . . .... ..... ................ . ..... . . . ... ... . . . . .. . .... . . . ...... .. ... .. ............. . ..... ............ . . ...... . ....... . . .... ... . . . . . . . . .......
lowQualScore : 7 4 0 77777777777777 4444444 4 0 9 11 7 7777 000 0 99 0 0 6666 4 4 4 3333333 0 5555 0 55 5555555555 99 0 88 0 11 1 11 22 6 0 7 7 0 7 0 0 2222222222 7 5 3333333 7 88888888888888888888888888888888888888888888 5 7 0 0 0 5 0 0 0 0 0 000 0 0 5555 0 0 0 00 55555 0 5 0 0 0 0 0 0 0 0000 0 0000000000000 0 0 0 0 0 5 0 0 00000000 0 0 5 0 0000 55555 0000000000000000 0 00000 5 0 0 000 555 0 0 0 0 00 0 0000 0 5 5 555555 00 000 55 0000000000000 0 00000 000000000000 0 0 000000 0 0000000 0 0 0000 000 0 0 0 0 0 0 0 0 0000000
consensus : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--TCGTAAGTCCC-A--AATA-NA-ATACA--AA-AA-C----AAGAGT-TGGG-C-AA-AC-ACGG-A----C-C--CCTGGAC----------ACACC--A-G-AG-GTG--GGATCAG--GTGCCTAGGAGGAGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-GC-CGTGAG-CCC-ATAGTC-TTGATCA--G--GTAA-ACGG---A----------GTC---------A--------TCA------GTGTGTGAAAAACGGCTTAACAATGGTTATGAAACACACCAGNCAGCATTTGACTCAAATGGCAGGTCNATATTGGTAANCTAAATTGTNATAACGACGCATAGAATCAACGTAANATNCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACATTGTCTGTAAGTAAGCCTGCTCGGATTCAAAAAACTGATCGTACGCAGAACA-GCTCTTGCGTATCGAATANGTTGAGAGACATACAC-CCATCCAATGCAGGTGATGATGNAATATNGCTGCATAAATATGGAAANTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGTTGAGTAGTTTACGTTCGCCGTTAATGTCANTGTTCANTAAANTATCCAAGTACGAAGCAGACAATGGAAGACTCTNTGGTGTCGCTTA-TTCTAGTTTCGTTGGGATATACTGAATCGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATATAAAA--TAGGTCAGCTAT--AAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGA-GACCTGAT-GCCAAAAACTACAACAGATA-TGTCAATGAG
Reference ( gi|1 ) : CTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ACCAA-TC--TCGTAAGTCCC-A--AATG-GA-ATACA--AA-AA-C----AAGAGT-TAGG-C-AA-AT-ACAG-A----C-C--CCTGGAC----------ACACC--A-G-TG-GTG--GGATCAG--GTGCCTAAGAGGAGTAAGCATCCCCTATCG-AC-CGGTCACAC-CC-GC-CGTGTG-CCC-GTTGTC-TTGATGA--G--GTAA-ACGG---A----------GT----------A--------TCA------GTGTATGAAAAACGGCTTAACAATTGCTGTGAAACACATCAGACAGCATTTAACCCAA-TGCCAGG-CTATACTGATAAAAGAAATCGTTATAACGAC-CATGGAATT--TGTAAAATGCAGTCTTT-AAACGTGACCGTTGAAACCCCTGCAACAACAAC-TT-TTTGTAAGTA-GTCTG-------TCAAAAA-CTTATCATACGTAGAACAAGCTCTTGCGTATCGAATATGTTGAGAGACATACACACCGT---ATGCAAGTGATCATGGAATATTGCTACAAAAATATGAGAAATTGACGATGGA-GAAATTCAAATCTT-CCTGTTTG-TCA-AAAAGTTGACTGGTT-A-GTTTGCCTTTAAAGTCAATGTTCAATAAAATATATAAGTACGAAGTAGAC-ATGGAATACTCTGTGGTGTCTTTTATTTCTAA-TTCGCTGGGATATATTGAAT-------------GAAAACCATTATTAGTAATAGATAAAACGTCGTCAATGTATCGAAATGTCGAAT-TAAATGCCACTGCT--AGATATCTCTTCTTCTCATATAAAAACT-GGTCAGCTAACAAAGGAGCACAATTCGTGTCTAT-GGGAATTCCAATAGA-CTGTTGGAAGACCTGATTGCCAAAAACTACAA-AAATATTGTCAATGAGGAGCTCCAGCATTGCTTTAATATCAACTTCAGAGTATTTTGTGTGTAGAATCAAAGTGGGGTTTAATAAAATAATTTTTAGAATGGTTGATCACTAGATATGAATATTTCCTTTTTCCATTTTTGTTGAAGAAGCAACTGGCTATAATATTGAAAAGTATTGTCTTTGATTTATCATTCGAAATAATCTCGTGCAA
gi|3 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--TCGTAAGTCCT-A--AATA-TA-ATACA--AA-AA-C----AAGAGT-TGGG-C-AA-TC-ACGG-A----C-C--CCTGGAC----------ACACC--A-G-AG-GTG--GGATCAG--GTGCCTAGGAGGAGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-GC-CGTGAG-CCC-ATAGTC-TTGATCA--G--GTAA-ACGGAACA----------GTCCGTAGTCAAA--------TCA------GTGTGTGAAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGATAGG-TTATATTGGTAAACTAAATTGTAATAACGAC-CATAGAATC--TATAATATG
gi|4 : tgTAAA-GGCAA-AG-ACA-------A-C----GA-------ACAGTG-ATCAA-TC--TCGCAAGTCCT-A--AATA-TA-ATACA--AA-AA-C----AAGAGT-TGGG-C-AA-TC-ACGG-A----C-C--CCTGGAC----------ACACC--A-G-AG-GTG--GGATCAG--GTGCCTAGGAGGAGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-GC-CGTGAG-CCC-ATAGTC-TTGATCA--G--GTAA-ACGG---A----------tgtaattatagttatcttatt
gi|9 : gTAAACGGCAA-AG-ATACATGATCG-CAGTTGA-------ACTGTG-ATCAC-TC--TTGCAAGTCCC----AATA-GA-ATACAGGAA-AA-C----GA-AG--TAGG-C-AC-AT---AG-A----T-CCGCCTGGACAGATATTCCTACGCC--A-G-AG-GTGCCGGATacagtccgtagtcaaatcagtgtgt
gi|21 : tataTAAA-GGAAACAA-ATA-------A-C----GA-------ACAGTG-ATCGA-TT--TCGTA
gi|10 : ataAAA-GGCAA-AGTATA-------A-T----GATCGATGAACTGTGGATCAA-TC--TTGCAAGTCCC-A--AATA-GATATACA--GGGAA-C----ACGAGT-TAGG-C-AA-AC-ATAG------C-C--CCTGGAC----------ACGCC--A-G-AG-GTG--GGATCAG--ACACCTtaa
gi|19 : tataAA-GGCAA-AG-ACA---------C----GA-------ATAGTG-ATCAA-TC--TC
gi|2 : atgttGCAATAG-ATA-------AAC----GA-------ACAGTG-ATCAAATC--T-GTAAGTCCCTG--AATATAA-ATACA--AA-AA-C----AAGAGT-TGGG-CCAA-AC-ACGG-A----A-C--CC-GGAC----------ATACC--AAG-AG-ATG--AGAT-AG--GT-CCTAGGAAGGGTAAG-ATCCCCTGTT--AC-CGGTC-CACACC-GC-CGTCAA-TCC--TAGTC-TT--TGATCG--GTAA--CGG---AACAATCCGTAGTCA--------A--------TCA------GTGTGTGAATAACGGCCTAACAATGGTTATGAA-CACATCAACCAGCATTTGACTCAAATGGCAGGTCAATATTGGTAACT--AATTGTTATAATGACGCATA-AATTAACG-AAAATTCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACATTGTCTGTAAGTAAGCCTGCTCGGATTCAAAAAACTGATCGTACGCAGAACA-GCTCT-GCGTAT-GAATAAGTTGAGAGACATACAC-CCATCCAATGCAGGTGATGATGGAATATTGCTGCATAAATATGGAAAGTTGAcgcatgcccattcaatatcacac
gi|13 : -ATA-------AGC----GA-------ACAGTG-ATCA--TC--TT-TA--TCCT-ACTAAGC-AA-AT-TA--AA-AA-TT---AAGAGT-TGGG-C-AAGAT----G-A----C-C--CTAGGAC----------ACgtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|12 : a-------A-C----AA-------AAAGTA-ATCAAATCATTAATCAATCCC-A--ATAA-AA-ATACA--AC-AA-TATAAAAGAAT-TAGC-C-AA-AC-ACGGAA----C-T--ACTGGAC----------ACtacgcacaagaaatggaaagtccca
gi|7 : tag-ATACA--AA-TATC----CAGA-T-AAGGAC-AC-AC-ACGG-AAATAT-C--CCTTAAC----------ACACC--A-GAAG-GCT--GAATCCG--GTGCCT-AGGGGAGAAGACGGCCCTGGTCA-AC-TGGGCACAC-CCTGC-Ccagcatcagaaaatga
gi|8 : ctacacacacGAGTGTGGG-T-AA-ACGATGG-A----CAT--TCTGG-T----------ATACC--A-G-AGAGTG--GGAACAGTGGTGCCTGGGAGGA-TAAAGATCCCCTGTCGTACATGGTC-CAC-AC-GCACGTGAGACCCAATTGTCATTGATCA--GGTGTAATACGA---A----------GT----------A--------ccgcaagcctataacgtgattggcgggta
gi|18 : CGG-A----C-T--TCTGGAC----------GCATCTGA-G-TA-TTG--ATAT--G--GTGCCTCAGAAGAGTAAGCATCCCattcg
gi|16 : TG--GGACCGG--G-GTCTGGGAGGAGTAAG-------TGTCG-AC-CGCCCACAT-TC------------------ATC-TTCATCA--G--GTAA-ACGT---A----------GT----------A--------GC--------TGTAtca
gi|22 : ATCAG--ATGTCTAAGAGGAGTAAGCATTCCCTGTatcggttggtttg
gi|20 : G-AC-CGGTCACAC-CC-GC-CGTG
gi|15 : tgctC-AC-CGTGAG-CCC-ATTGTT-TTGATCA--C--GTAA-ACAG---A----------GT----------AATAGGTAGTCAAAAACAGTGCCT-AAAAACGGCTTAACAATTGaatccaaaaccctaagtaactaaacaaaca
gi|23 : tTCTTGCGTATCGAATATGTTGAAAGACATAagatg
gi|5 : TGTAATATGGCT-TATAAATATGG--ATTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGT-GAGTAGTTTACGTTTGCCGTTAATGTCATTGTTCATTAAATTATCCAAGTACGAAGCAGA----AGAAGAC-CTTTGGTGTC-CTTA-TTCTAG-TTCA-TGGG--ATACTAAAT-------------G
gi|2 : AAAGTTGAGTAGTT-A-GTTCGCCGT-AATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACAATGGAAGACTCTGTGGTGTCGCTTA-TTCTAGTTTCGTT-GGATATATTGAATCGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATcgaatacaaaggtattataatgtat
gi|2 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggATATAAAA--TAGGTCAGCTAT--AAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGA-GACCTGAT-GCCAAAAACTACAACAGATA-TGTCAATGAGgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AGAGGTGCATTATGTAATGTTAAAATTGATAAAGATAAACAAAGACTGATGATGTATTATATGTAAAATCAAGAGCAGGATTAAACACAACCACAGAAACATGAGATGACGAGTAAGTGTCTAAAAACCAGTAACATTCCATTCTGACATGCCACATCCATCCTGAGCCCTCTGTCTGATCAGTAATCG
Unaligned ( gi|11 ): CATCCGCAGAACAGCTCTCGTTGTATGATCGTCAGTTGAAAAGACATTAAAACCCACCTAATTGCAAACAGTGATAATGAGATAATAGAGCTACACAAGTAGATGCAAA
Unaligned ( gi|14 ): CCGCTGACGACATCACCTATTTATATCAGTAGCCCTGCCTCGAATGGAATAAACTGTATCACCACGCAGAACAGCTTTGTGCTGTATACTTTCGAAAAACAT
Unaligned ( gi|17 ): CCATAGTCAAAATCAATGTATAAAGAACAGCCAAGCAATGGTAATGCAACACGCCTGACGGCA
Alignments
lowQualScore : 1 11111111111111 1111111 11111 2222222222222222 666666666666666666666666666666 22222222 111 2 111 1 2 333333 1 11111 11 2222222222 1 1 1 1 11 1 11 1 11111 2222 1111 1 11 1 22 1 1 1 2 22 1 1 2 1 11 44444444444444 2 22 555555 1 2 11 2 3333 333 1 1 2 2 1 2
lowQualScore : 5 0 4 88888888888888 3333333 4 8 55 66 88888 1 3 3 55 4 4 8888 3 7 3 3 7777 3 44 1 2222222222222222 3 3 4444 44 3 0 55 4 2 4 4 1 4 7777 4 4 7777 4 4 777 55 4 888888888888888888888888888888 6 44444444 444 3 1 3 3 555 4 7 1 3 6 333333 1 1 4 5 2 4 6 99999 0 88 7 3333333333 3 0 3 0 88 999 5 33 1 0 33 3 33333 4444 3 8888 1 0 1 33 0 3 1 5 77 5 2 5 5 7 7 7 3 0 7 1 1 1 22 7 1 5 3 3 2 44 0 55555555555555 4 3 0 77 333333 4 5 0 88 0 4444 111 2 5 5 0 0 5 0
lowQualScore : . . . .............. ....... . . .. .. ..... . . . .. . . .... . . . . .... . .. . ................ . . .... .. . . .. . . . . . . .... . . .... . . ... .. . .............................. . ........ ... . . . . ... . . . . . ...... . . . . . . . ..... . .. . .......... . . . . .. ... . .. . . .. . ..... .... . .... . . . .. . . . . .. . . . . . . . . . . . . . .. . . . . . . .. . .............. . . . .. ...... . . . .. . .... ... . . . . . . .
lowQualScore : 7 0 4 55555555555555 0000000 0 0 55 33 11111 0 6 6 55 0 0 5555 6 3 6 3 1111 3 66 3 2222222222222222 3 3 9999 66 3 5 00 0 5 4 4 9 4 7777 0 0 7777 0 0 000 55 4 111111111111111111111111111111 7 22222222 000 2 0 7 7 000 0 3 0 3 7 333333 0 0 0 0 5 0 7 77777 7 33 3 0000000000 3 7 3 0 88 222 0 88 0 0 88 3 77777 0000 7 5555 0 5 2 88 2 2 0 0 55 0 5 0 5 3 3 3 3 7 3 0 0 0 00 3 0 0 3 7 3 00 7 33333333333333 0 0 0 55 555555 0 5 0 55 0 0000 555 5 5 5 0 0 0 0
consensus : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTC-AATGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATT-ACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGTAAGCCTGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAAC-AGCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTTTA-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGAC-ATGGAAGACTCTGTGGTGTC-CTTA-TTCTAG-TTCGCTGGGATATATTGAAT-CGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
Reference ( family-1491 ) : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGNCAGCATTTGACTCAAATGGCAGGTCNATATTGGTAANCTAAATTGTNATAACGACGCATAGAATCAACGTAANATNCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACAT-TGTCTGTA--AGTAAGCCTGC-TCGGATTCAAAAAACTG-ATCGT-ACGCAGAAC-AGCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCATCCAA-TGCA---GGTGATGATG---NAATATNGCTGCATAAAT--ATGGAAANTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGTTGAGTAGTTTACGTTCGCCGTTAATGTCANTGTTCANTAAANTATCCAAGTACGAAGCAGACAATGGAAGACTCTNTGGTGTCGCTTA-TTCTAGTTTCGTTGGGATATACTGAAT-CGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATATAAAATA--GGTCAGCTA--TAAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGG-AGACCTGA-TGCCAAAAACTACAACAGATA-TGTCAATGAG
gi|1 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ACCAA-TC--T-CGTAAGTCCC-A---AATGGA-A-TACA--AA-AA-CA----AGAGT-TAGGC-AAAT-ACAG-A----C-C--CCTGGAC----------A-----CACCA-G-TG-G--TG--G-GATCAG--GTGCCTAAGAGG-AGTAAGCATCCCCTATCG-AC-CGGTCACAC-CC-G--C-CGTGTG-CCC-GTTGTC-TT-GAT---GAG--GTAA-ACGG---A----------GT----------A---TCAGT-GT--------ATG---AAAAACGGCTTAACAATTGCTGTGAAACACATCAGACAGCATTTAACCC-AATGCCAGG-CTATACTGATAAAAGAAATCGTTATAACGAC-CATGGAATT--TGTAAAATGCAGTCTTT-AAACGTGACCGTTGAAACCCCTGCAACAACAAC-T-T-TTTGTA--AGT-AGTCTG--TC-------AAAAACTT-ATCAT-ACGTAGAACAAGCTCT-TG-C-GTATCGA--ATATGTTG-AGAGACAT--ACACACCGT---A-TGCA---AGTGATCATG---GAATATTGCTACAAAAAT--ATGAGAAATTGACGATGGA-GAAATTCAAATC-TTCCTGTTT-GTCA-AAAAGTTGACTGG-TTA-GTTTGCCTTTAAAGTCAATGTTCAATAAAATATATAAGTACGAAGTAGAC-ATGGAATACTCTGTGGTGTCTTTTATTTCTAA-TTCGCTGGGATATATTGAAT--------------GAAAACCATTATTAGTAATAGATAAAACGTCGTCAATGTATCGAAATGTCGAAT-TAAATGCCACTGCT--AGATATCTCTTCTTCTCATATAAAA-ACTGGTCAGCTAACAAAGGAGCACAATTCGTGTCTA-TGGGAATTCCAATAG-ACTGTTGGAAGACCTGATTGCCAAAAACTACAA-AAATATTGTCAATGAG
gi|10 : cAAA-GGCAA-AGTATA-------A-T----GATCGATGAACTGTGGATCAA-TC--T-TGCAAGTCCC-A---AATAGATA-TACA--GGGAA-CA----CGAGT-TAGGC-AAAC-ATAG------C-C--CCTGGAC----------A-----CGCCA-G-AG-G--TG--G-GATCAG--ACACCTgagctccagcattgctttaatatcaacttcagagtattttgtgtgtagaatcaaagtggggtttaataaaataatttttagaatggttgatcactagatatgaatatttcctttttccatttttgttgaagaagcaactggctataatattgaaaagtattgtctttgatttatcattcgaaataatctcgtgcaa
gi|11 : tataCGCAGAAC-AGCTCT-CGTT-GTAT-GATCGTCAGTTGAAAAGACATTAAAAC-CCACCTAATTGCAAACAGTGATAATGAGATAATAGAGCTACACAAGTAGATGCAAA
gi|12 : catc-------A-C----AA-------AAAGTA-ATCAAATCATT-AATCAATCCC-A---ATAAAA-A-TACA--AC-AA-TATAAAAGAAT-TAGCC-AAAC-ACGGAA----C-T--ACTGGAC----------ACCAG-CATCA-G-A
gi|13 : tag-ATA-------AGC----GA-------ACAGTG-ATCA--TC--T-T-TA--TCCT-ACTAAGCAAA-T-TA-A--AA-AT-TA----AGAGT-TGGGC-AAG--AT-G-A----C-C--CTAGGAC----------ACTACGCACAA-G-AA-A--TG--G-AAaaatga
gi|14 : aCCGCTG--ACGACATCACCTATTTATATCAGTAGCCCTGCCTCGAATGGAATAAACTGTATCACCACGCAGAAC-AGCTTTGTG-CTGTATagtccca
gi|15 : C-A--C-CGTGAG-CCC-ATTGTT-TT-GAT---CAC--GTAA-ACAG---A----------GTA---------A---TAGGTAGTCAAAAACAGTGCCTAAAAACGGCTTAACAATactttcgaaaaacat
gi|16 : t--TG--G-GACCGG--G-GTCTGGGAGG-AGTAAG-------TGTCG-AC-CGCCCACAT-TC--------------------ATC-TT-CAT---CAG--GTAA-ACGT---A----------GTtgagatg
gi|17 : ---A----------GTC---------AAAATCAAT-GT--------ATA---AAGAACAGCCAAGCAATGGTAATGCAACACGCCTGACGGCAagctgtaatcggttggtttg
gi|18 : ccatCGG-A----C-T--TCTGGAC----------G-----CATCT-G-AG-TATTG--A-TAT--G--GTGCCTCAGAAG-AGTAAGCATCCC
gi|19 : AA-GGCAA-AG-ACA---------C----GA-------ATAGTG-ATCAA-TC--TCCGCATG-CCC-ATTCAATATC-A-CACtca
gi|2 : atgttGCAATAG-ATA-------AAC----GA-------ACAGTG-ATCAAATC--T--GTAAGTCCCTG---AATATA-AATACA--AA-AA-CA----AGAGT-TGGGCCAAAC-ACGG-A----A-C--CC-GGAC----------A-----TACCAAG-AG-A--TG--A-GAT-AG--GT-CCTAGGAAG-GGTAAG-ATCCCCTGTT--AC-CGGTC-CACACC-G--C-CGTCAA-TCC--TAGTC-TTTGAT---C-G--GTAA--CGG---AACAATCCGTAGTC---------AA--TCAGT-GT--------GTG---AATAACGGCCTAACAATGGTTATGAA-CACATCAACCAGCATTTGACTCAAATGGCAGGTCAATATTGGTAA-CTAA-TTGTTATAATGACGCATA-AATTAACG-AAAATTCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACAT-TGTCTGTA--AGTAAGCCTGC-TCGGATTCAAAAAACTG-ATCGT-ACGCAGAAC-AGCTC--TG-C-GTAT-GA--ATAAGTTG-AGAGACAT--ACAC-CCATCCAA-TGCA---GGTGATGATG---GAATATTGCTGCATAAAT--ATGGAAAGTTGA
gi|2 : AAAGTTGAGTAGTT-A-GTTCGCCGT-AATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACAATGGAAGACTCTGTGGTGTCGCTTA-TTCTAGTTTCGTTGG-ATATATTGAAT-CGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATgtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|2 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggATATAAAATA--GGTCAGCTA--TAAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGG-AGACCTGA-TGCCAAAAACTACAACAGATA-TGTCAATGAGgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|20 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggaaagttgagtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaTGCTG-AC-CGGTCACAC-CC-G--C-CGTGAA-TCC-AAAACC-CT-AAG---TAA--CTAA-ACa
gi|21 : TAAA-GGAAACAA-ATA-------A-C----GA-------ACAGTG-ATCGA-TT--T-CGTAaaaca
gi|22 : ataATCAG--ATGTCTAAGAGG-AGTAAGCATTCCCTGTtaa
gi|23 : TCT-TG-C-GTATCGA--ATATGTTG-AAAGACAT--A
gi|3 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTC-AATGATAGGT-TATATTGGTAAACTAAATTGTAATAACGAC-CATAGAATCTA--TAATAT
gi|4 : tgTAAA-GGCAA-AG-ACA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGCAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTgtgtaattatagttatcttatt
gi|5 : gTG---TAATATGGCT-TATAAAT--ATGGA--TTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGT-GAGTAGTTTACGTTTGCCGTTAATGTCATTGTTCATTAAATTATCCAAGTACGAAGCAGA----AGAAGAC-CTTTGGTGTC-CTTA-TTCTAG-TTCA-TGGG--ATACTAAATGCGA
gi|6 : -A-TGTA--AA-AT-CA----AGAGC-AGGATTAAAC-ACA--A----C-C--AC-AGAA----------A-----CAT---G-AG-A--TG--ACGAGTAA--GTGTCTAAAAACCAGTAA-CATTCCATTCTG-AC-ATGCCACAT-CC-A--T-CCTGAG-CCC-TCTGTC--T-GAT---CA---GTAA-TCGatacaaaggtattataatgtat
gi|7 : agaggtgcattatgtaatgttaaaattgataaagataaacaaagactgatgatgtattat-A-TACA--AA-TATCC----AGATA-AGGAC-ACAC-ACGG-AAATAT-C--CCTTAAC----------A-----CACCA-GAAG-G--CT--G-AATCCG--GTGCCTAGG-GG-AGAAGACGGCCCTGGTCA-AC-TGGGCACAC-CCTGCCC-CGCAAG-CCT-ATAA-C-GT-GATTGGCGG--GTA
gi|8 : ctacacacacGAGTGTGGGT-AAACGATGG-A----CAT--TCTGG-T----------A-----TACCA-G-AGAG--TG--G-GAACAGTGGTGCCTGGGAGG-A-TAAAGATCCCCTGTCGTACATGGTC-CAC-AC-G--CACGTGAGACCCAATTGTCATT-GAT---CAGGTGTAATACGA---A----------GTA---------A---T
gi|9 : TAAACGGCAA-AG-ATACATGATCG-CAGTTGA-------ACTGTG-ATCAC-TC--T-TGCAAGTCCC-----AATAGA-A-TACAGGAA-AA-CG----A-AG--TAGGC---AC-ATAG-A----T-CCGCCTGGACAGATATTCCTA-----CGCCA-G-AG-G--TGCCG-GATtcg
Alignments
lowQualScore : 1 11111111111111 1111111 11111 2222222222222222 666666666666666666666666666666 22222222 111 1 11 1 33333 1 11111 11 1 4444444444 1 1 1 1 11 1 11 1 11111 222 1111 11 1 11 1 1 1 222 111 1 1 1 1 1 4444444444444 1 11 333333 1 1 11 1 2222 111 1 1 1 1 1 1
lowQualScore : 5 0 4 88888888888888 3333333 4 8 55 66 88888 1 3 3 55 4 4 8888 3 7 3 3 7777 3 44 1 2222222222222222 3 3 4444 44 3 0 55 4 2 4 4 1 4 4 55 4 4 66 1 4 4 777 66 55 888888888888888888888888888888 6 44444444 444 3 3 1 44 7 7 0 3 6 99999 1 1 5 1 3 6 0 99999 88 2 6666666666 3 0 3 0 88 999 5 33 1 0 33 3 0 33333 333 1 8888 1 7 1 33 0 3 1 5 88 5 1 5 5 7 888 0 7 999 7 3 3 3 3 2 6 8888888888888 1 1 5 77 000000 1 5 5 88 5 4444 999 1 5 5 5 5 5 5
lowQualScore : . . . .............. ....... . . .. .. ..... . . . .. . . .... . . . . .... . .. . ................ . . .... .. . . .. . . . . . . . .. . . .. . . . ... .. .. .............................. . ........ ... . . . .. . . . . . ..... . . . . . . . ..... .. . .......... . . . . .. ... . .. . . .. . . ..... ... . .... . . . .. . . . . .. . . . . . ... . . ... . . . . . . . ............. . . . .. ...... . . . .. . .... ... . . . . . . .
lowQualScore : 7 0 4 55555555555555 0000000 0 0 55 33 11111 0 6 6 55 0 0 5555 6 3 6 3 1111 3 66 3 2222222222222222 3 3 9999 66 3 5 00 0 5 4 4 9 4 0 55 0 0 44 0 4 4 888 11 44 111111111111111111111111111111 7 22222222 000 2 3 0 00 3 3 7 3 7 00000 0 0 0 0 7 7 7 77777 33 3 0000000000 3 7 3 0 88 222 0 88 0 0 88 3 7 77777 333 0 5555 0 0 2 88 2 2 0 0 00 0 0 0 5 3 000 7 3 000 3 3 3 3 3 0 7 5555555555555 0 0 5 55 000000 0 5 5 55 5 5555 000 0 5 5 5 5 0 5
consensus : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGTAGGCCTGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
Reference ( family-1491 ) : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTA-CGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGTAAGCCTGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTTTA-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
gi|1 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ACCAA-TC--T-CGTAAGTCCC-A---AATGGA-A-TACA--AA-AA-CA----AGAGT-TAGGC-AAAT-ACAG-A----C-C--CCTGGAC----------A-----CACCA-G-TG-G--TG--G-GATCAG--GTGCCTAAGAGG-AGTAAGCATCCCCTATCG-AC-CGGTCACAC-CC-G--C-CGTGTG-CCC-GTTGTC-TT-GAT---GAG--GTAA-ACGG---A----------GT----------A---TCAGT-GT--------ATG---AAAAACGGCTTAACAATTGCTGTGAAACACATCAGACAGCATTTAACCCAA-TGCCAGG-CTATACTGATAAAAGAAATCGTTATAACGAC-CATGGAATT--TGTAAAATGCAGTCTTT-AAACGTGACCGTTGAAACCCCTGCAACAACAAC-T-T-TTTGTA--AGTA-GTCTG--TC-------AAAAACTT-ATCAT-ACGTAGAACAAGCTCT-TG-C-GTATCGA--ATATGTTG-AGAGACAT--ACACACCGT---A-TGCA---AGTGATCATG---GAATATTGCTACAAAAAT--ATGAGAAATTGACGATGGA-GAAATTCAAATC-TTCCTGTTTG-TCA-AAAAGTTGACTGGTT-A-GTTTGCCTTTAAAGTCAATGTTCAATAAAATATATAAGTACGAAGTAGACA-TGGAATACTCTGTGGTGTC-TTTTATTTCTAA-TTCGCTGGGATATATTGAAT-------------GAAAACCATTATTAGTAATAGATAAAACGTCGTCAATGTATCGAAATGTCGAAT-TAAATGCCACTGCT--AGATATCTCTTCTTCTCATATAAAA-ACTGGTCAGCTAACAAAGGAGCACAATTCGTGTCTA-TGGGAATTCCAATAG-ACTGTTGGAAGACCTGATTGCCAAAAACTACAA-AAATATTGTCAATGAG
gi|10 : cAAA-GGCAA-AGTATA-------A-T----GATCGATGAACTGTGGATCAA-TC--T-TGCAAGTCCC-A---AATAGATA-TACA--GGGAA-CA----CGAGT-TAGGC-AAAC-ATAG------C-C--CCTGGAC----------A-----CGCCA-G-AG-G--TG--G-GATCAG--ACACCTgagctccagcattgctttaatatcaacttcagagtattttgtgtgtagaatcaaagtggggtttaataaaataatttttagaatggttgatcactagatatgaatatttcctttttccatttttgttgaagaagcaactggctataatattgaaaagtattgtctttgatttatcattcgaaataatctcgtgcaa
gi|11 : tataCGCAGAACA-GCTCT-CGTT-GTAT-GATCGTCAGTTGAAAAGACATTAAAAC-CCACCTAATTGCAAACAGTGATAATGAGATAATAGAGCTACACAAGTAGATGCAAA
gi|12 : catc-------A-C----AA-------AAAGTA-ATCAAATCATT-AATCAATCCC-A---ATAAAA-A-TACA--AC-AA-TATAAAAGAAT-TAGCC-AAAC-ACGGAA----C-T--ACTGGAC----------ACCAG-CATCA-G-A
gi|13 : tag-ATA-------AGC----GA-------ACAGTG-ATCA--TC--T-T-TA--TCCT-ACTAAGCAAA-T-TA-A--AA-AT-TA----AGAGT-TGGGC-AAG--AT-G-A----C-C--CTAGGAC----------ACTACGCACAA-G-AA-A--TG--G-AAaaatga
gi|14 : aCCGCTG--ACGACATCACCTATTTATATCAGTAGCCCTGCCTCGAATGGAATAAACTGTATCACCACGCAGAACA-GCTTTGTG-CTGTATagtccca
gi|15 : C-A--C-CGTGAG-CCC-ATTGTT-TT-GAT---CAC--GTAA-ACAG---A----------GTA---------A---TAGGTAGTCAAAAACAGTGCCTAAAAACGGCTTAACAATactttcgaaaaacat
gi|16 : t--TG--G-GACCGG--G-GTCTGGGAGG-AGTAAG-------TGTCG-AC-CGCCCACAT---------------------TCATC-TT-CAT---CAG--GTAA-ACGT---A----------GTtgagatg
gi|17 : ---A----------GTC---------AAAATCAAT-GT--------ATA---AAGAACAGCCAAGCAATGGTAATGCAACACGCCTGACGGCAagctgtaatcggttggtttg
gi|18 : ccatCGG-A----C-T--TCTGGAC----------G-----CATCT-G-AG-TATTG--A-TAT--G--GTGCCTCAGAAG-AGTAAGCATCCC
gi|19 : AA-GGCAA-AG-ACA---------C----GA-------ATAGTG-ATCAA-TC--TCCGCATG-CCC-ATTCAATATC-A-CACtca
gi|2 : atgttGCAATAG-ATA-------AAC----GA-------ACAGTG-ATCAAATC--T--GTAAGTCCCTG---AATATA-AATACA--AA-AA-CA----AGAGT-TGGGCCAAAC-ACGG-A----A-C--CC-GGAC----------A-----TACCAAG-AG-A--TG--A-GAT-AG--GT-CCTAGGAAG-GGTAAG-ATCCCCTGTT--AC-CGGTC-CACACC-G--C-CGTCAA-TCC--TAGTC-TTTGAT---C-G--GTAA--CGG---AACAATCCGTAGTC---------AA--TCAGT-GT--------GTG---AATAACGGCCTAACAATGGTTATGAA-CACATCAACCAGCATTTGACTCAAATGGCAGGTCAATATTGGTAA-CTAA-TTGTTATAATGACGCATA-AATTAACG-AAAATTCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACAT-TGTCTGTA--AGTAAGCCTGC-TCGGATTCAAAAAACTG-ATCGT-ACGCAGAACA-GCTC--TG-C-GTAT-GA--ATAAGTTG-AGAGACAT--ACAC-CCATCCAA-TGCA---GGTGATGATG---GAATATTGCTGCATAAAT--ATGGAAAGTTGA
gi|2 : AAAGTTGAGTAGTT-A-GTTCGCCGT-AATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACAATGGAAGACTCTGTGGTGTCGCTT-ATT-CTAGTTTCGTT-GGATATATTGAATCGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATgtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|2 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggATATAAAATA--GGTCAGCTA--TAAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGG-AGACCTGA-TGCCAAAAACTACAACAGATA-TGTCAATGAGgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|20 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggaaagttgagtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaTGCTG-AC-CGGTCACAC-CC-G--C-CGTGAA-TCC-Aa
gi|21 : TAAA-GGAAACAA-ATA-------A-C----GA-------ACAGTG-ATCGA-TT--T-CGTAaaaccctaagtaactaaacaaaca
gi|22 : ataATCAG--ATGTCTAAGAGG-AGTAAGCATTCCCTGTtaa
gi|23 : TCT-TG-C-GTATCGA--ATATGTTG-AAAGACAT--A
gi|3 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGATAGGT-TATATTGGTAAACTAAATTGTAATAACGAC-CATAGAAT
gi|4 : tgTAAA-GGCAA-AG-ACA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGCAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTctataatatgtgtaattatagttatcttatt
gi|5 : gTG---TAATATGGCT-TATAAAT--ATGGA--TTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAG-TGAGTAGTTTACGTTTGCCGTTAATGTCATTGTTCATTAAATTATCCAAGTACGAAGCAGA----AGAAGAC-CTTTGGTGTC-CTT-ATT-CTAG-TTCA-TGGGATA
gi|6 : -A-TGTA--AA-AT-CA----AGAGC-AGGATTAAAC-ACA--A----C-C--AC-AGAA----------A-----CAT---G-AG-A--TG--ACGAGTAA--GTGTCTAAAAACCAGTAA-CATTCCATTCTG-AC-ATGCCACAT-CC-A--T-CCTGAG-CCC-TCTGTC--T-GAT---CA---GTAA-TCGctaaatgcgaatacaaaggtattataatgtat
gi|7 : agaggtgcattatgtaatgttaaaattgataaagataaacaaagactgatgatgtattat-A-TACA--AA-TATCC----AGATA-AGGAC-ACAC-ACGG-AAATAT-C--CCTTAAC----------A-----CACCA-GAAG-G--CT--G-AATCCG--GTGCCTAGG-GG-AGAAGACGGCCCTGGTCA-AC-TGGGCACAC-CCTGCCC-CGCAAG-CCT-ATAA-C-GT-GATTGGCGG--GTA
gi|8 : ctacacacacGAGTGTGGGT-AAACGATGG-A----CAT--TCTGG-T----------A-----TACCA-G-AGAG--TG--G-GAACAGTGGTGCCTGGGAGG-A-TAAAGATCCCCTGTCGTACATGGTC-CAC-AC-G--CACGTGAGACCCAATTGTCATT-GAT---CAGGTGTAATACGA---A----------GTA---------A---T
gi|9 : TAAACGGCAA-AG-ATACATGATCG-CAGTTGA-------ACTGTG-ATCAC-TC--T-TGCAAGTCCC-----AATAGA-A-TACAGGAA-AA-CG----A-AG--TAGGC---AC-ATAG-A----T-CCGCCTGGACAGATATTCCTA-----CGCCA-G-AG-G--TGCCG-GATtcg
Alignments
lowQualScore : 1 11111111111111 1111111 11111 2222222222222222 666666666666666666666666666666 22222222 111 1 11 1 22222 1 11111 11 1 4444444444 1 1 1 1 11 1 11 1 11111 222 1111 11 1 11 1 1 1 111 111 1 1 1 1 1 4444444444444 1 11 333333 1 1 11 1 2222 111 1 1 1 1 1 1
lowQualScore : 5 0 4 88888888888888 3333333 4 8 55 66 88888 1 3 3 55 4 4 8888 3 7 3 3 7777 3 44 1 2222222222222222 3 3 4444 44 3 0 55 4 2 4 4 1 4 4 55 4 4 66 1 4 4 777 66 55 888888888888888888888888888888 6 44444444 444 3 3 1 44 7 7 0 3 6 22222 1 1 5 1 3 6 0 99999 88 5 6666666666 3 0 3 0 88 999 5 33 1 0 33 3 0 33333 333 1 8888 1 7 1 33 0 3 1 5 88 5 1 5 5 7 777 0 7 999 7 3 3 3 3 2 6 8888888888888 1 1 5 77 000000 1 5 5 88 5 4444 999 1 5 5 5 5 5 5
lowQualScore : . . . .............. ....... . . .. .. ..... . . . .. . . .... . . . . .... . .. . ................ . . .... .. . . .. . . . . . . . .. . . .. . . . ... .. .. .............................. . ........ ... . . . .. . . . . . ..... . . . . . . . ..... .. . .......... . . . . .. ... . .. . . .. . . ..... ... . .... . . . .. . . . . .. . . . . . ... . . ... . . . . . . . ............. . . . .. ...... . . . .. . .... ... . . . . . . .
lowQualScore : 7 0 4 55555555555555 0000000 0 0 55 33 11111 0 6 6 55 0 0 5555 6 3 6 3 1111 3 66 3 2222222222222222 3 3 9999 66 3 5 00 0 5 4 4 9 4 0 55 0 0 44 0 4 4 888 11 44 111111111111111111111111111111 7 22222222 000 2 3 0 00 3 3 7 3 7 00000 0 0 0 0 7 7 7 77777 33 0 0000000000 3 7 3 0 88 222 0 88 0 0 88 3 7 77777 333 0 5555 0 0 2 88 2 2 0 0 00 0 0 0 5 3 777 7 3 000 3 3 3 3 3 0 7 5555555555555 0 0 5 55 000000 0 5 5 55 5 5555 000 0 5 5 5 5 0 5
consensus : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGTAG-CCTGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
Reference ( family-1491 ) : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGTAGGCCTGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
gi|1 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ACCAA-TC--T-CGTAAGTCCC-A---AATGGA-A-TACA--AA-AA-CA----AGAGT-TAGGC-AAAT-ACAG-A----C-C--CCTGGAC----------A-----CACCA-G-TG-G--TG--G-GATCAG--GTGCCTAAGAGG-AGTAAGCATCCCCTATCG-AC-CGGTCACAC-CC-G--C-CGTGTG-CCC-GTTGTC-TT-GAT---GAG--GTAA-ACGG---A----------GT----------A---TCAGT-GT--------ATG---AAAAACGGCTTAACAATTGCTGTGAAACACATCAGACAGCATTTAACCCAA-TGCCAGG-CTATACTGATAAAAGAAATCGTTATAACGAC-CATGGAATT--TGTAAAATGCAGTCTTT-AAACGTGACCGTTGAAACCCCTGCAACAACAAC-T-T-TTTGTA--AGTAG-TCTG--TC-------AAAAACTT-ATCAT-ACGTAGAACAAGCTCT-TG-C-GTATCGA--ATATGTTG-AGAGACAT--ACACACCGT---A-TGCA---AGTGATCATG---GAATATTGCTACAAAAAT--ATGAGAAATTGACGATGGA-GAAATTCAAATC-TTCCTGTTTG-TCA-AAAAGTTGACTGGTT-A-GTTTGCCTTTAAAGTCAATGTTCAATAAAATATATAAGTACGAAGTAGACA-TGGAATACTCTGTGGTGTC-TTTTATTTCTAA-TTCGCTGGGATATATTGAAT-------------GAAAACCATTATTAGTAATAGATAAAACGTCGTCAATGTATCGAAATGTCGAAT-TAAATGCCACTGCT--AGATATCTCTTCTTCTCATATAAAA-ACTGGTCAGCTAACAAAGGAGCACAATTCGTGTCTA-TGGGAATTCCAATAG-ACTGTTGGAAGACCTGATTGCCAAAAACTACAA-AAATATTGTCAATGAG
gi|10 : cAAA-GGCAA-AGTATA-------A-T----GATCGATGAACTGTGGATCAA-TC--T-TGCAAGTCCC-A---AATAGATA-TACA--GGGAA-CA----CGAGT-TAGGC-AAAC-ATAG------C-C--CCTGGAC----------A-----CGCCA-G-AG-G--TG--G-GATCAG--ACACCTgagctccagcattgctttaatatcaacttcagagtattttgtgtgtagaatcaaagtggggtttaataaaataatttttagaatggttgatcactagatatgaatatttcctttttccatttttgttgaagaagcaactggctataatattgaaaagtattgtctttgatttatcattcgaaataatctcgtgcaa
gi|11 : tataCGCAGAACA-GCTCT-CGTT-GTAT-GATCGTCAGTTGAAAAGACATTAAAAC-CCACCTAATTGCAAACAGTGATAATGAGATAATAGAGCTACACAAGTAGATGCAAA
gi|12 : catc-------A-C----AA-------AAAGTA-ATCAAATCATT-AATCAATCCC-A---ATAAAA-A-TACA--AC-AA-TATAAAAGAAT-TAGCC-AAAC-ACGGAA----C-T--ACTGGAC----------ACCAG-CATCA-G-A
gi|13 : tag-ATA-------AGC----GA-------ACAGTG-ATCA--TC--T-T-TA--TCCT-ACTAAGCAAA-T-TA-A--AA-AT-TA----AGAGT-TGGGC-AAG--AT-G-A----C-C--CTAGGAC----------ACTACGCACAA-G-AA-A--TG--G-AAaaatga
gi|14 : aCCGCTG--ACGACATCACCTATTTATATCAGTAGCCCTGCCTCGAATGGAATAAACTGTATCACCACGCAGAACA-GCTTTGTG-CTGTATagtccca
gi|15 : C-A--C-CGTGAG-CCC-ATTGTT-TT-GAT---CAC--GTAA-ACAG---A----------GTA---------A---TAGGTAGTCAAAAACAGTGCCTAAAAACGGCTTAACAATactttcgaaaaacat
gi|16 : t--TG--G-GACCGG--G-GTCTGGGAGG-AGTAAG-------TGTCG-AC-CGCCCACAT---------------------TCATC-TT-CAT---CAG--GTAA-ACGT---A----------GTtgagatg
gi|17 : ---A----------GTC---------AAAATCAAT-GT--------ATA---AAGAACAGCCAAGCAATGGTAATGCAACACGCCTGACGGCAagctgtaatcggttggtttg
gi|18 : ccatCGG-A----C-T--TCTGGAC----------G-----CATCT-G-AG-TATTG--A-TAT--G--GTGCCTCAGAAG-AGTAAGCATCCC
gi|19 : AA-GGCAA-AG-ACA---------C----GA-------ATAGTG-ATCAA-TC--TCCGCATG-CCC-ATTCAATATC-A-CACtca
gi|2 : atgttGCAATAG-ATA-------AAC----GA-------ACAGTG-ATCAAATC--T--GTAAGTCCCTG---AATATA-AATACA--AA-AA-CA----AGAGT-TGGGCCAAAC-ACGG-A----A-C--CC-GGAC----------A-----TACCAAG-AG-A--TG--A-GAT-AG--GT-CCTAGGAAG-GGTAAG-ATCCCCTGTT--AC-CGGTC-CACACC-G--C-CGTCAA-TCC--TAGTC-TTTGAT---C-G--GTAA--CGG---AACAATCCGTAGTC---------AA--TCAGT-GT--------GTG---AATAACGGCCTAACAATGGTTATGAA-CACATCAACCAGCATTTGACTCAAATGGCAGGTCAATATTGGTAA-CTAA-TTGTTATAATGACGCATA-AATTAACG-AAAATTCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACAT-TGTCTGTA--AGTAAGCCTGC-TCGGATTCAAAAAACTG-ATCGT-ACGCAGAACA-GCTC--TG-C-GTAT-GA--ATAAGTTG-AGAGACAT--ACAC-CCATCCAA-TGCA---GGTGATGATG---GAATATTGCTGCATAAAT--ATGGAAAGTTGA
gi|2 : AAAGTTGAGTAGTT-A-GTTCGCCGT-AATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACAATGGAAGACTCTGTGGTGTCGCTT-ATT-CTAGTTTCGTT-GGATATATTGAATCGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATgtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|2 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggATATAAAATA--GGTCAGCTA--TAAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGG-AGACCTGA-TGCCAAAAACTACAACAGATA-TGTCAATGAGgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|20 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggaaagttgagtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaTGCTG-AC-CGGTCACAC-CC-G--C-CGTGAA-TCC-Aa
gi|21 : TAAA-GGAAACAA-ATA-------A-C----GA-------ACAGTG-ATCGA-TT--T-CGTAaaaccctaagtaactaaacaaaca
gi|22 : ataATCAG--ATGTCTAAGAGG-AGTAAGCATTCCCTGTtaa
gi|23 : TCT-TG-C-GTATCGA--ATATGTTG-AAAGACAT--A
gi|3 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGATAGGT-TATATTGGTAAACTAAATTGTAATAACGAC-CATAGAAT
gi|4 : tgTAAA-GGCAA-AG-ACA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGCAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTctataatatgtgtaattatagttatcttatt
gi|5 : gTG---TAATATGGCT-TATAAAT--ATGGA--TTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGT-GAGTAGTTTACGTTTGCCGTTAATGTCATTGTTCATTAAATTATCCAAGTACGAAGCAGA----AGAAGAC-CTTTGGTGTC-CTT-ATT-CTAG-TTCA-TGGGATA
gi|6 : -A-TGTA--AA-AT-CA----AGAGC-AGGATTAAAC-ACA--A----C-C--AC-AGAA----------A-----CAT---G-AG-A--TG--ACGAGTAA--GTGTCTAAAAACCAGTAA-CATTCCATTCTG-AC-ATGCCACAT-CC-A--T-CCTGAG-CCC-TCTGTC--T-GAT---CA---GTAA-TCGctaaatgcgaatacaaaggtattataatgtat
gi|7 : agaggtgcattatgtaatgttaaaattgataaagataaacaaagactgatgatgtattat-A-TACA--AA-TATCC----AGATA-AGGAC-ACAC-ACGG-AAATAT-C--CCTTAAC----------A-----CACCA-GAAG-G--CT--G-AATCCG--GTGCCTAGG-GG-AGAAGACGGCCCTGGTCA-AC-TGGGCACAC-CCTGCCC-CGCAAG-CCT-ATAA-C-GT-GATTGGCGG--GTA
gi|8 : ctacacacacGAGTGTGGGT-AAACGATGG-A----CAT--TCTGG-T----------A-----TACCA-G-AGAG--TG--G-GAACAGTGGTGCCTGGGAGG-A-TAAAGATCCCCTGTCGTACATGGTC-CAC-AC-G--CACGTGAGACCCAATTGTCATT-GAT---CAGGTGTAATACGA---A----------GTA---------A---T
gi|9 : TAAACGGCAA-AG-ATACATGATCG-CAGTTGA-------ACTGTG-ATCAC-TC--T-TGCAAGTCCC-----AATAGA-A-TACAGGAA-AA-CG----A-AG--TAGGC---AC-ATAG-A----T-CCGCCTGGACAGATATTCCTA-----CGCCA-G-AG-G--TGCCG-GATtcg
Alignments
lowQualScore : 1 11111111111111 1111111 11111 2222222222222222 666666666666666666666666666666 22222222 111 1 11 1 22222 1 11111 11 1 1 4444444444 1 1 1 1 11 1 11 1 11111 222 1111 11 1 11 1 1 1 111 111 1 1 1 1 1 4444444444444 1 11 333333 1 1 11 1 2222 111 1 1 1 1 1 1
lowQualScore : 5 0 4 88888888888888 3333333 4 8 55 66 88888 1 3 3 55 4 4 8888 3 7 3 3 7777 3 44 1 2222222222222222 3 3 4444 44 3 0 55 4 2 4 4 1 4 4 55 4 4 66 1 4 4 777 66 55 888888888888888888888888888888 6 44444444 444 3 3 1 44 7 7 0 3 6 22222 1 1 5 1 3 6 0 99999 88 3 3 6666666666 3 0 3 0 88 999 5 33 1 0 33 3 0 33333 333 1 8888 1 7 1 33 0 3 1 5 88 5 1 5 5 7 777 0 7 999 7 3 3 3 3 2 6 8888888888888 1 1 5 77 000000 1 5 5 88 5 4444 999 1 5 5 5 5 5 5
lowQualScore : . . . .............. ....... . . .. .. ..... . . . .. . . .... . . . . .... . .. . ................ . . .... .. . . .. . . . . . . . .. . . .. . . . ... .. .. .............................. . ........ ... . . . .. . . . . . ..... . . . . . . . ..... .. . . .......... . . . . .. ... . .. . . .. . . ..... ... . .... . . . .. . . . . .. . . . . . ... . . ... . . . . . . . ............. . . . .. ...... . . . .. . .... ... . . . . . . .
lowQualScore : 7 0 4 55555555555555 0000000 0 0 55 33 11111 0 6 6 55 0 0 5555 6 3 6 3 1111 3 66 3 2222222222222222 3 3 9999 66 3 5 00 0 5 4 4 9 4 0 55 0 0 44 0 4 4 888 11 44 111111111111111111111111111111 7 22222222 000 2 3 0 00 3 3 7 3 7 00000 0 0 0 0 7 7 7 77777 33 3 3 0000000000 3 7 3 0 88 222 0 88 0 0 88 3 7 77777 333 0 5555 0 0 2 88 2 2 0 0 00 0 0 0 5 3 777 7 3 000 3 3 3 3 3 0 7 5555555555555 0 0 5 55 000000 0 5 5 55 5 5555 000 0 5 5 5 5 0 5
consensus : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
Reference ( family-1491 ) : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
gi|1 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ACCAA-TC--T-CGTAAGTCCC-A---AATGGA-A-TACA--AA-AA-CA----AGAGT-TAGGC-AAAT-ACAG-A----C-C--CCTGGAC----------A-----CACCA-G-TG-G--TG--G-GATCAG--GTGCCTAAGAGG-AGTAAGCATCCCCTATCG-AC-CGGTCACAC-CC-G--C-CGTGTG-CCC-GTTGTC-TT-GAT---GAG--GTAA-ACGG---A----------GT----------A---TCAGT-GT--------ATG---AAAAACGGCTTAACAATTGCTGTGAAACACATCAGACAGCATTTAACCCAA-TGCCAGG-CTATACTGATAAAAGAAATCGTTATAACGAC-CATGGAATT--TGTAAAATGCAGTCTTT-AAACGTGACCGTTGAAACCCCTGCAACAACAAC-T-T-TTTGTA--AGT-AGTC-TG--TC-------AAAAACTT-ATCAT-ACGTAGAACAAGCTCT-TG-C-GTATCGA--ATATGTTG-AGAGACAT--ACACACCGT---A-TGCA---AGTGATCATG---GAATATTGCTACAAAAAT--ATGAGAAATTGACGATGGA-GAAATTCAAATC-TTCCTGTTTG-TCA-AAAAGTTGACTGGTT-A-GTTTGCCTTTAAAGTCAATGTTCAATAAAATATATAAGTACGAAGTAGACA-TGGAATACTCTGTGGTGTC-TTTTATTTCTAA-TTCGCTGGGATATATTGAAT-------------GAAAACCATTATTAGTAATAGATAAAACGTCGTCAATGTATCGAAATGTCGAAT-TAAATGCCACTGCT--AGATATCTCTTCTTCTCATATAAAA-ACTGGTCAGCTAACAAAGGAGCACAATTCGTGTCTA-TGGGAATTCCAATAG-ACTGTTGGAAGACCTGATTGCCAAAAACTACAA-AAATATTGTCAATGAG
gi|10 : cAAA-GGCAA-AGTATA-------A-T----GATCGATGAACTGTGGATCAA-TC--T-TGCAAGTCCC-A---AATAGATA-TACA--GGGAA-CA----CGAGT-TAGGC-AAAC-ATAG------C-C--CCTGGAC----------A-----CGCCA-G-AG-G--TG--G-GATCAG--ACACCTgagctccagcattgctttaatatcaacttcagagtattttgtgtgtagaatcaaagtggggtttaataaaataatttttagaatggttgatcactagatatgaatatttcctttttccatttttgttgaagaagcaactggctataatattgaaaagtattgtctttgatttatcattcgaaataatctcgtgcaa
gi|11 : tataCGCAGAACA-GCTCT-CGTT-GTAT-GATCGTCAGTTGAAAAGACATTAAAAC-CCACCTAATTGCAAACAGTGATAATGAGATAATAGAGCTACACAAGTAGATGCAAA
gi|12 : catc-------A-C----AA-------AAAGTA-ATCAAATCATT-AATCAATCCC-A---ATAAAA-A-TACA--AC-AA-TATAAAAGAAT-TAGCC-AAAC-ACGGAA----C-T--ACTGGAC----------ACCAG-CATCA-G-A
gi|13 : tag-ATA-------AGC----GA-------ACAGTG-ATCA--TC--T-T-TA--TCCT-ACTAAGCAAA-T-TA-A--AA-AT-TA----AGAGT-TGGGC-AAG--AT-G-A----C-C--CTAGGAC----------ACTACGCACAA-G-AA-A--TG--G-AAaaatga
gi|14 : aCCGCTG--ACGACATCACCTATTTATATCAGT-AGCCCTGCCTCGAATGGAATAAACTGTATCACCACGCAGAACA-GCTTTGTG-CTGTATagtccca
gi|15 : C-A--C-CGTGAG-CCC-ATTGTT-TT-GAT---CAC--GTAA-ACAG---A----------GTA---------A---TAGGTAGTCAAAAACAGTGCCTAAAAACGGCTTAACAATactttcgaaaaacat
gi|16 : t--TG--G-GACCGG--G-GTCTGGGAGG-AGTAAG-------TGTCG-AC-CGCCCACAT---------------------TCATC-TT-CAT---CAG--GTAA-ACGT---A----------GTtgagatg
gi|17 : ---A----------GTC---------AAAATCAAT-GT--------ATA---AAGAACAGCCAAGCAATGGTAATGCAACACGCCTGACGGCAagctgtaatcggttggtttg
gi|18 : ccatCGG-A----C-T--TCTGGAC----------G-----CATCT-G-AG-TATTG--A-TAT--G--GTGCCTCAGAAG-AGTAAGCATCCC
gi|19 : AA-GGCAA-AG-ACA---------C----GA-------ATAGTG-ATCAA-TC--TCCGCATG-CCC-ATTCAATATC-A-CACtca
gi|2 : atgttGCAATAG-ATA-------AAC----GA-------ACAGTG-ATCAAATC--T--GTAAGTCCCTG---AATATA-AATACA--AA-AA-CA----AGAGT-TGGGCCAAAC-ACGG-A----A-C--CC-GGAC----------A-----TACCAAG-AG-A--TG--A-GAT-AG--GT-CCTAGGAAG-GGTAAG-ATCCCCTGTT--AC-CGGTC-CACACC-G--C-CGTCAA-TCC--TAGTC-TTTGAT---C-G--GTAA--CGG---AACAATCCGTAGTC---------AA--TCAGT-GT--------GTG---AATAACGGCCTAACAATGGTTATGAA-CACATCAACCAGCATTTGACTCAAATGGCAGGTCAATATTGGTAA-CTAA-TTGTTATAATGACGCATA-AATTAACG-AAAATTCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACAT-TGTCTGTA--AGTAAGCC-TGC-TCGGATTCAAAAAACTG-ATCGT-ACGCAGAACA-GCTC--TG-C-GTAT-GA--ATAAGTTG-AGAGACAT--ACAC-CCATCCAA-TGCA---GGTGATGATG---GAATATTGCTGCATAAAT--ATGGAAAGTTGA
gi|2 : AAAGTTGAGTAGTT-A-GTTCGCCGT-AATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACAATGGAAGACTCTGTGGTGTCGCTT-ATT-CTAGTTTCGTT-GGATATATTGAATCGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATgtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|2 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggATATAAAATA--GGTCAGCTA--TAAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGG-AGACCTGA-TGCCAAAAACTACAACAGATA-TGTCAATGAGgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|20 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggaaagttgagtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaTGCTG-AC-CGGTCACAC-CC-G--C-CGTGAA-TCC-Aa
gi|21 : TAAA-GGAAACAA-ATA-------A-C----GA-------ACAGTG-ATCGA-TT--T-CGTAaaaccctaagtaactaaacaaaca
gi|22 : ataATCAG--ATGTCTAAGAGG-AGTAAGCATTCCCTGTtaa
gi|23 : TCT-TG-C-GTATCGA--ATATGTTG-AAAGACAT--A
gi|3 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGATAGGT-TATATTGGTAAACTAAATTGTAATAACGAC-CATAGAAT
gi|4 : tgTAAA-GGCAA-AG-ACA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGCAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTctataatatgtgtaattatagttatcttatt
gi|5 : gTG---TAATATGGCT-TATAAAT--ATGGA--TTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGT-GAGTAGTTTACGTTTGCCGTTAATGTCATTGTTCATTAAATTATCCAAGTACGAAGCAGA----AGAAGAC-CTTTGGTGTC-CTT-ATT-CTAG-TTCA-TGGGATA
gi|6 : -A-TGTA--AA-AT-CA----AGAGC-AGGATTAAAC-ACA--A----C-C--AC-AGAA----------A-----CAT---G-AG-A--TG--ACGAGTAA--GTGTCTAAAAACCAGTAA-CATTCCATTCTG-AC-ATGCCACAT-CC-A--T-CCTGAG-CCC-TCTGTC--T-GAT---CA---GTAA-TCGctaaatgcgaatacaaaggtattataatgtat
gi|7 : agaggtgcattatgtaatgttaaaattgataaagataaacaaagactgatgatgtattat-A-TACA--AA-TATCC----AGATA-AGGAC-ACAC-ACGG-AAATAT-C--CCTTAAC----------A-----CACCA-GAAG-G--CT--G-AATCCG--GTGCCTAGG-GG-AGAAGACGGCCCTGGTCA-AC-TGGGCACAC-CCTGCCC-CGCAAG-CCT-ATAA-C-GT-GATTGGCGG--GTA
gi|8 : ctacacacacGAGTGTGGGT-AAACGATGG-A----CAT--TCTGG-T----------A-----TACCA-G-AGAG--TG--G-GAACAGTGGTGCCTGGGAGG-A-TAAAGATCCCCTGTCGTACATGGTC-CAC-AC-G--CACGTGAGACCCAATTGTCATT-GAT---CAGGTGTAATACGA---A----------GTA---------A---T
gi|9 : TAAACGGCAA-AG-ATACATGATCG-CAGTTGA-------ACTGTG-ATCAC-TC--T-TGCAAGTCCC-----AATAGA-A-TACAGGAA-AA-CG----A-AG--TAGGC---AC-ATAG-A----T-CCGCCTGGACAGATATTCCTA-----CGCCA-G-AG-G--TGCCG-GATtcg
Alignments
lowQualScore : 1 11111111111111 1111111 11111 2222222222222222 666666666666666666666666666666 22222222 111 1 11 1 22222 1 11111 11 1 1 4444444444 1 1 1 1 11 1 11 1 11111 222 1111 11 1 11 1 1 1 111 111 1 1 1 1 1 4444444444444 1 11 333333 1 1 11 1 2222 111 1 1 1 1 1 1
lowQualScore : 5 0 4 88888888888888 3333333 4 8 55 66 88888 1 3 3 55 4 4 8888 3 7 3 3 7777 3 44 1 2222222222222222 3 3 4444 44 3 0 55 4 2 4 4 1 4 4 55 4 4 66 1 4 4 777 66 55 888888888888888888888888888888 6 44444444 444 3 3 1 44 7 7 0 3 6 22222 1 1 5 1 3 6 0 99999 88 3 3 6666666666 3 0 3 0 88 999 5 33 1 0 33 3 0 33333 333 1 8888 1 7 1 33 0 3 1 5 88 5 1 5 5 7 777 0 7 999 7 3 3 3 3 2 6 8888888888888 1 1 5 77 000000 1 5 5 88 5 4444 999 1 5 5 5 5 5 5
lowQualScore : . . . .............. ....... . . .. .. ..... . . . .. . . .... . . . . .... . .. . ................ . . .... .. . . .. . . . . . . . .. . . .. . . . ... .. .. .............................. . ........ ... . . . .. . . . . . ..... . . . . . . . ..... .. . . .......... . . . . .. ... . .. . . .. . . ..... ... . .... . . . .. . . . . .. . . . . . ... . . ... . . . . . . . ............. . . . .. ...... . . . .. . .... ... . . . . . . .
lowQualScore : 7 0 4 55555555555555 0000000 0 0 55 33 11111 0 6 6 55 0 0 5555 6 3 6 3 1111 3 66 3 2222222222222222 3 3 9999 66 3 5 00 0 5 4 4 9 4 0 55 0 0 44 0 4 4 888 11 44 111111111111111111111111111111 7 22222222 000 2 3 0 00 3 3 7 3 7 00000 0 0 0 0 7 7 7 77777 33 3 3 0000000000 3 7 3 0 88 222 0 88 0 0 88 3 7 77777 333 0 5555 0 0 2 88 2 2 0 0 00 0 0 0 5 3 777 7 3 000 3 3 3 3 3 0 7 5555555555555 0 0 5 55 000000 0 5 5 55 5 5555 000 0 5 5 5 5 0 5
consensus : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
Reference ( family-1491 ) : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
gi|1 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ACCAA-TC--T-CGTAAGTCCC-A---AATGGA-A-TACA--AA-AA-CA----AGAGT-TAGGC-AAAT-ACAG-A----C-C--CCTGGAC----------A-----CACCA-G-TG-G--TG--G-GATCAG--GTGCCTAAGAGG-AGTAAGCATCCCCTATCG-AC-CGGTCACAC-CC-G--C-CGTGTG-CCC-GTTGTC-TT-GAT---GAG--GTAA-ACGG---A----------GT----------A---TCAGT-GT--------ATG---AAAAACGGCTTAACAATTGCTGTGAAACACATCAGACAGCATTTAACCCAA-TGCCAGG-CTATACTGATAAAAGAAATCGTTATAACGAC-CATGGAATT--TGTAAAATGCAGTCTTT-AAACGTGACCGTTGAAACCCCTGCAACAACAAC-T-T-TTTGTA--AGT-AGTC-TG--TC-------AAAAACTT-ATCAT-ACGTAGAACAAGCTCT-TG-C-GTATCGA--ATATGTTG-AGAGACAT--ACACACCGT---A-TGCA---AGTGATCATG---GAATATTGCTACAAAAAT--ATGAGAAATTGACGATGGA-GAAATTCAAATC-TTCCTGTTTG-TCA-AAAAGTTGACTGGTT-A-GTTTGCCTTTAAAGTCAATGTTCAATAAAATATATAAGTACGAAGTAGACA-TGGAATACTCTGTGGTGTC-TTTTATTTCTAA-TTCGCTGGGATATATTGAAT-------------GAAAACCATTATTAGTAATAGATAAAACGTCGTCAATGTATCGAAATGTCGAAT-TAAATGCCACTGCT--AGATATCTCTTCTTCTCATATAAAA-ACTGGTCAGCTAACAAAGGAGCACAATTCGTGTCTA-TGGGAATTCCAATAG-ACTGTTGGAAGACCTGATTGCCAAAAACTACAA-AAATATTGTCAATGAG
gi|10 : cAAA-GGCAA-AGTATA-------A-T----GATCGATGAACTGTGGATCAA-TC--T-TGCAAGTCCC-A---AATAGATA-TACA--GGGAA-CA----CGAGT-TAGGC-AAAC-ATAG------C-C--CCTGGAC----------A-----CGCCA-G-AG-G--TG--G-GATCAG--ACACCTgagctccagcattgctttaatatcaacttcagagtattttgtgtgtagaatcaaagtggggtttaataaaataatttttagaatggttgatcactagatatgaatatttcctttttccatttttgttgaagaagcaactggctataatattgaaaagtattgtctttgatttatcattcgaaataatctcgtgcaa
gi|11 : tataCGCAGAACA-GCTCT-CGTT-GTAT-GATCGTCAGTTGAAAAGACATTAAAAC-CCACCTAATTGCAAACAGTGATAATGAGATAATAGAGCTACACAAGTAGATGCAAA
gi|12 : catc-------A-C----AA-------AAAGTA-ATCAAATCATT-AATCAATCCC-A---ATAAAA-A-TACA--AC-AA-TATAAAAGAAT-TAGCC-AAAC-ACGGAA----C-T--ACTGGAC----------ACCAG-CATCA-G-A
gi|13 : tag-ATA-------AGC----GA-------ACAGTG-ATCA--TC--T-T-TA--TCCT-ACTAAGCAAA-T-TA-A--AA-AT-TA----AGAGT-TGGGC-AAG--AT-G-A----C-C--CTAGGAC----------ACTACGCACAA-G-AA-A--TG--G-AAaaatga
gi|14 : aCCGCTG--ACGACATCACCTATTTATATCAGT-AGCCCTGCCTCGAATGGAATAAACTGTATCACCACGCAGAACA-GCTTTGTG-CTGTATagtccca
gi|15 : C-A--C-CGTGAG-CCC-ATTGTT-TT-GAT---CAC--GTAA-ACAG---A----------GTA---------A---TAGGTAGTCAAAAACAGTGCCTAAAAACGGCTTAACAATactttcgaaaaacat
gi|16 : t--TG--G-GACCGG--G-GTCTGGGAGG-AGTAAG-------TGTCG-AC-CGCCCACAT---------------------TCATC-TT-CAT---CAG--GTAA-ACGT---A----------GTtgagatg
gi|17 : ---A----------GTC---------AAAATCAAT-GT--------ATA---AAGAACAGCCAAGCAATGGTAATGCAACACGCCTGACGGCAagctgtaatcggttggtttg
gi|18 : ccatCGG-A----C-T--TCTGGAC----------G-----CATCT-G-AG-TATTG--A-TAT--G--GTGCCTCAGAAG-AGTAAGCATCCC
gi|19 : AA-GGCAA-AG-ACA---------C----GA-------ATAGTG-ATCAA-TC--TCCGCATG-CCC-ATTCAATATC-A-CACtca
gi|2 : atgttGCAATAG-ATA-------AAC----GA-------ACAGTG-ATCAAATC--T--GTAAGTCCCTG---AATATA-AATACA--AA-AA-CA----AGAGT-TGGGCCAAAC-ACGG-A----A-C--CC-GGAC----------A-----TACCAAG-AG-A--TG--A-GAT-AG--GT-CCTAGGAAG-GGTAAG-ATCCCCTGTT--AC-CGGTC-CACACC-G--C-CGTCAA-TCC--TAGTC-TTTGAT---C-G--GTAA--CGG---AACAATCCGTAGTC---------AA--TCAGT-GT--------GTG---AATAACGGCCTAACAATGGTTATGAA-CACATCAACCAGCATTTGACTCAAATGGCAGGTCAATATTGGTAA-CTAA-TTGTTATAATGACGCATA-AATTAACG-AAAATTCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACAT-TGTCTGTA--AGTAAGCC-TGC-TCGGATTCAAAAAACTG-ATCGT-ACGCAGAACA-GCTC--TG-C-GTAT-GA--ATAAGTTG-AGAGACAT--ACAC-CCATCCAA-TGCA---GGTGATGATG---GAATATTGCTGCATAAAT--ATGGAAAGTTGA
gi|2 : AAAGTTGAGTAGTT-A-GTTCGCCGT-AATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACAATGGAAGACTCTGTGGTGTCGCTT-ATT-CTAGTTTCGTT-GGATATATTGAATCGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATgtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|2 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggATATAAAATA--GGTCAGCTA--TAAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGG-AGACCTGA-TGCCAAAAACTACAACAGATA-TGTCAATGAGgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|20 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggaaagttgagtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaTGCTG-AC-CGGTCACAC-CC-G--C-CGTGAA-TCC-Aa
gi|21 : TAAA-GGAAACAA-ATA-------A-C----GA-------ACAGTG-ATCGA-TT--T-CGTAaaaccctaagtaactaaacaaaca
gi|22 : ataATCAG--ATGTCTAAGAGG-AGTAAGCATTCCCTGTtaa
gi|23 : TCT-TG-C-GTATCGA--ATATGTTG-AAAGACAT--A
gi|3 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGATAGGT-TATATTGGTAAACTAAATTGTAATAACGAC-CATAGAAT
gi|4 : tgTAAA-GGCAA-AG-ACA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGCAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAG--GTAA-ACGGAACA----------GTCCGTAGTCAAA---TCAGT-GT--------GTctataatatgtgtaattatagttatcttatt
gi|5 : gTG---TAATATGGCT-TATAAAT--ATGGA--TTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGT-GAGTAGTTTACGTTTGCCGTTAATGTCATTGTTCATTAAATTATCCAAGTACGAAGCAGA----AGAAGAC-CTTTGGTGTC-CTT-ATT-CTAG-TTCA-TGGGATA
gi|6 : -A-TGTA--AA-AT-CA----AGAGC-AGGATTAAAC-ACA--A----C-C--AC-AGAA----------A-----CAT---G-AG-A--TG--ACGAGTAA--GTGTCTAAAAACCAGTAA-CATTCCATTCTG-AC-ATGCCACAT-CC-A--T-CCTGAG-CCC-TCTGTC--T-GAT---CA---GTAA-TCGctaaatgcgaatacaaaggtattataatgtat
gi|7 : agaggtgcattatgtaatgttaaaattgataaagataaacaaagactgatgatgtattat-A-TACA--AA-TATCC----AGATA-AGGAC-ACAC-ACGG-AAATAT-C--CCTTAAC----------A-----CACCA-GAAG-G--CT--G-AATCCG--GTGCCTAGG-GG-AGAAGACGGCCCTGGTCA-AC-TGGGCACAC-CCTGCCC-CGCAAG-CCT-ATAA-C-GT-GATTGGCGG--GTA
gi|8 : ctacacacacGAGTGTGGGT-AAACGATGG-A----CAT--TCTGG-T----------A-----TACCA-G-AGAG--TG--G-GAACAGTGGTGCCTGGGAGG-A-TAAAGATCCCCTGTCGTACATGGTC-CAC-AC-G--CACGTGAGACCCAATTGTCATT-GAT---CAGGTGTAATACGA---A----------GTA---------A---T
gi|9 : TAAACGGCAA-AG-ATACATGATCG-CAGTTGA-------ACTGTG-ATCAC-TC--T-TGCAAGTCCC-----AATAGA-A-TACAGGAA-AA-CG----A-AG--TAGGC---AC-ATAG-A----T-CCGCCTGGACAGATATTCCTA-----CGCCA-G-AG-G--TGCCG-GATtcg
blockSeqs : C T T CATGATCGCAGTT TCGATGA G A AT CC ACTA G T A GG G T TAAA G C G A AATA A CG T AGATATTCCTA A A TAT CC C TG C C T A A A T CC A A AA T A T TGG GT TA AACAGTCCGTAGTCAAA A CAAAAACA CCT A A G TC A A G G AACG T T G C G C ACCTA TC A C CCTCGAATGG T C . TG TT C TC A A TA . CTAAT AAC A AGAT A A C AG A G C . G G G T T TAC T CAA T G . . T T G CGACAACATGATG T T . . A T A . AA . TA T C T A . . C .
blockSeqs : . C . AGC . . A . T ATTC A . . . . . . . T . . . . . T ACTACG . . AG . . . . C . . A . . . . . A C . . . . A AACAGTCCGTAGTCAAA . . . A . A T . . . . A . ATTG . . . CTCGGATTC . . . T CT . . A . . . CCAA . G G T G T . A T . A . . . . . . . . .
blockSeqs : . . . AAC . . . . A TG A . . . . . . . . . . . . . A ACCAG . . G . . . . C . . A . . . . . A A . . . . A AACAATCCGTAGTCAA . . . . . T C . . T . . T G . T . .
blockSeqs : . . . AT . . . . T A T . . . . . . . . . . . . . T A . . A . . . . C . . A . . . . . A A . . . . A AGTCAAAA . . . . C
blockSeqs : . . . AC . . . . C A T . . . . . . . . . . . . . T G . . A . . . . C . . A . . . . . A A . . . . A AGTAA . .
blockSeqs : . . . AC . . . . C A T . . . . . . . . . . . . . T A . . G . . . . C . . A . . . . . T T . . . . T AGTAA
blockSeqs : . . AC . . . . C A T . . . . . . . . . . . . . T A . . G . . . . G . . . . . . . . A A . . . . .
blockSeqs : . AC . . . . T . G . . . . . . . . . . . . . T A . . A . . . . . . . . . . . . . . T . . . .
blockSeqs : C . . . . . . . . . . . . . . . . . . T A . . G . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . G . . .
blockSeqs : . . . . . A . . . .
blockSeqCons : AACATCCGTAGTCAAA**************
originalCons : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGG---A----------GTC---------A---TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
finalCons : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAG--GTAA-ACGGAACATCCGTAGTCAAA--------------TCAGT-GT--------GTG---AAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
Alignments
lowQualScore : 1 11111111111111 1111111 11111 2222222222222222 11111 1 11 1 22222 1 11111 11 1 1 4444444444 1 1 1 1 11 1 11 1 11111 222 1111 11 1 11 1 1 1 111 111 1 1 1 1 1 4444444444444 1 11 333333 1 1 11 1 2222 111 1 1 1 1 1 1
lowQualScore : 5 0 4 88888888888888 3333333 4 8 55 66 88888 1 3 3 55 4 4 8888 3 7 3 3 7777 3 44 1 2222222222222222 3 3 4444 44 3 0 55 4 2 4 4 1 4 4 55 4 4 66 1 4 4 777 0 77777 5 6 3 3 3 1 44 7 7 0 3 6 22222 1 1 5 1 3 6 0 99999 88 3 3 6666666666 3 0 3 0 88 999 5 33 1 0 33 3 0 33333 333 1 8888 1 7 1 33 0 3 1 5 88 5 1 5 5 7 777 0 7 999 7 3 3 3 3 2 6 8888888888888 1 1 5 77 000000 1 5 5 88 5 4444 999 1 5 5 5 5 5 5
lowQualScore : . . . .............. ....... . . .. .. ..... . . . .. . . .... . . . . .... . .. . ................ . . .... .. . . .. . . . . . . . .. . . .. . . . ... . ..... . . . . . . .. . . . . . ..... . . . . . . . ..... .. . . .......... . . . . .. ... . .. . . .. . . ..... ... . .... . . . .. . . . . .. . . . . . ... . . ... . . . . . . . ............. . . . .. ...... . . . .. . .... ... . . . . . . .
lowQualScore : 7 0 4 55555555555555 0000000 0 0 55 33 11111 0 6 6 55 0 0 5555 6 3 6 3 1111 3 66 3 2222222222222222 3 3 9999 66 3 5 00 0 5 4 4 9 4 0 55 0 0 44 0 0 0 000 4 77777 7 7 2 2 3 0 00 3 3 7 3 7 00000 0 0 0 0 7 7 7 77777 33 3 3 0000000000 3 7 3 0 88 222 0 88 0 0 88 3 7 77777 333 0 5555 0 0 2 88 2 2 0 0 00 0 0 0 5 3 777 7 3 000 3 3 3 3 3 0 7 5555555555555 0 0 5 55 000000 0 5 5 55 5 5555 000 0 5 5 5 5 0 5
consensus : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAGGTAAACGGAAC-A-TCCGTAGTC-AAA-TCAGTGTGTGAAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
Reference ( family-1491 ) : NTAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCC-A---AATANA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AAAC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTCG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATNGTC-TT-GAT---CAGGTAAACGGAAC-A-TCCGTAGTC-AAA-TCAGTGTGTGAAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGNCAGGTCTATATTGGTAAACTAAATCGTTATAACGAC-CATAGAATTAACGTAAAATNCNGCCCTTGAAACGTGACCGTTGAANCCGCTGCAACGACAACAT-TGTTTGTA--AGT-AGCC-TGC-TCGGAT--AAAAAACTG-ATCGT-ACGCAGAACA-GCTCT-TG-C-GTATCGA--ATANGTTG-AGAGACAT--ACAC-CCGTCCAA-TGCA---AGTGATNATG---NAATATNGCTACATAAAT--ATGGAAANTTGACGATGGACGAAGTTCGAATCGTNCCCGTTTGGTCATAAAAGTTGAGTAGTT-A-GTTCGCCGTTAATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACA-TGGAAGACTCTGTGGTGTC-CTT-ATT-CTAG-TTCGCTGGGATATATTGAATCGACAACATGATGGAAANCCATTATTANTGGTAGATAAAACGTCGTCAATGTATCGANATGTCGAATATAAGTGCCACCGCTAAAGATATCTCTTCTTCTCATATAAAATACTGGTCAGCTAACNAAGNAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGGAAGACCTGATTGCCAAAAACTACAACAGATATTGTCAATGAG
gi|1 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ACCAA-TC--T-CGTAAGTCCC-A---AATGGA-A-TACA--AA-AA-CA----AGAGT-TAGGC-AAAT-ACAG-A----C-C--CCTGGAC----------A-----CACCA-G-TG-G--TG--G-GATCAG--GTGCCTAAGAGG-AGTAAGCATCCCCTATCG-AC-CGGTCACAC-CC-G--C-CGTGTG-CCC-GTTGTC-TT-GAT---GAGGTAAACGGA-----------GT----A-TCAGTGTATGAAAAACGGCTTAACAATTGCTGTGAAACACATCAGACAGCATTTAACCCAA-TGCCAGG-CTATACTGATAAAAGAAATCGTTATAACGAC-CATGGAATT--TGTAAAATGCAGTCTTT-AAACGTGACCGTTGAAACCCCTGCAACAACAAC-T-T-TTTGTA--AGT-AGTC-TG--TC-------AAAAACTT-ATCAT-ACGTAGAACAAGCTCT-TG-C-GTATCGA--ATATGTTG-AGAGACAT--ACACACCGT---A-TGCA---AGTGATCATG---GAATATTGCTACAAAAAT--ATGAGAAATTGACGATGGA-GAAATTCAAATC-TTCCTGTTTG-TCA-AAAAGTTGACTGGTT-A-GTTTGCCTTTAAAGTCAATGTTCAATAAAATATATAAGTACGAAGTAGACA-TGGAATACTCTGTGGTGTC-TTTTATTTCTAA-TTCGCTGGGATATATTGAAT-------------GAAAACCATTATTAGTAATAGATAAAACGTCGTCAATGTATCGAAATGTCGAAT-TAAATGCCACTGCT--AGATATCTCTTCTTCTCATATAAAA-ACTGGTCAGCTAACAAAGGAGCACAATTCGTGTCTA-TGGGAATTCCAATAG-ACTGTTGGAAGACCTGATTGCCAAAAACTACAA-AAATATTGTCAATGAG
gi|10 : cAAA-GGCAA-AGTATA-------A-T----GATCGATGAACTGTGGATCAA-TC--T-TGCAAGTCCC-A---AATAGATA-TACA--GGGAA-CA----CGAGT-TAGGC-AAAC-ATAG------C-C--CCTGGAC----------A-----CGCCA-G-AG-G--TG--G-GATCAG--ACACCTgagctccagcattgctttaatatcaacttcagagtattttgtgtgtagaatcaaagtggggtttaataaaataatttttagaatggttgatcactagatatgaatatttcctttttccatttttgttgaagaagcaactggctataatattgaaaagtattgtctttgatttatcattcgaaataatctcgtgcaa
gi|11 : tataCGCAGAACA-GCTCT-CGTT-GTAT-GATCGTCAGTTGAAAAGACATTAAAAC-CCACCTAATTGCAAACAGTGATAATGAGATAATAGAGCTACACAAGTAGATGCAAA
gi|12 : catc-------A-C----AA-------AAAGTA-ATCAAATCATT-AATCAATCCC-A---ATAAAA-A-TACA--AC-AA-TATAAAAGAAT-TAGCC-AAAC-ACGGAA----C-T--ACTGGAC----------ACCAG-CATCA-G-A
gi|13 : tag-ATA-------AGC----GA-------ACAGTG-ATCA--TC--T-T-TA--TCCT-ACTAAGCAAA-T-TA-A--AA-AT-TA----AGAGT-TGGGC-AAG--AT-G-A----C-C--CTAGGAC----------ACTACGCACAA-G-AA-A--TG--G-AAaaatga
gi|14 : aCCGCTG--ACGACATCACCTATTTATATCAGT-AGCCCTGCCTCGAATGGAATAAACTGTATCACCACGCAGAACA-GCTTTGTG-CTGTATagtccca
gi|15 : C-A--C-CGTGAG-CCC-ATTGTT-TT-GAT---CACGTAAACAGAGTAA-TAGGTAGTCAAAA-ACAGTGCCT-AAAAACGGCTTAACAATactttcgaaaaacat
gi|16 : t--TG--G-GACCGG--G-GTCTGGGAGG-AGTAAG-------TGTCG-AC-CGCCCACAT---------------------TCATC-TT-CAT---CAGGTAAACGTAGT-A-GCTGTAATC-tgagatg
gi|17 : CCATAGTC-AAAATCAATGTATAAAGAACAGCCAAGCAATGGTAATGCAACACGCCTGACGGCAggttggtttg
gi|18 : CGG-A----C-T--TCTGGAC----------G-----CATCT-G-AG-TATTG--A-TAT--G--GTGCCTCAGAAG-AGTAAGCATCCC
gi|19 : AA-GGCAA-AG-ACA---------C----GA-------ATAGTG-ATCAA-TC--TCCGCATG-CCC-ATTCAATATC-A-CACtca
gi|2 : atgttGCAATAG-ATA-------AAC----GA-------ACAGTG-ATCAAATC--T--GTAAGTCCCTG---AATATA-AATACA--AA-AA-CA----AGAGT-TGGGCCAAAC-ACGG-A----A-C--CC-GGAC----------A-----TACCAAG-AG-A--TG--A-GAT-AG--GT-CCTAGGAAG-GGTAAG-ATCCCCTGTT--AC-CGGTC-CACACC-G--C-CGTCAA-TCC--TAGTC-TTTGAT---C-GGTAA-CGGAAC-AATCCGTAGTC-AA--TCAGTGTGTGAATAACGGCCTAACAATGGTTATGAA-CACATCAACCAGCATTTGACTCAAATGGCAGGTCAATATTGGTAA-CTAA-TTGTTATAATGACGCATA-AATTAACG-AAAATTCTGCCCTTGAAACGTGACTGTTGAACCCACTGCAACAACAACAT-TGTCTGTA--AGTAAGCC-TGC-TCGGATTCAAAAAACTG-ATCGT-ACGCAGAACA-GCTC--TG-C-GTAT-GA--ATAAGTTG-AGAGACAT--ACAC-CCATCCAA-TGCA---GGTGATGATG---GAATATTGCTGCATAAAT--ATGGAAAGTTGA
gi|2 : AAAGTTGAGTAGTT-A-GTTCGCCGT-AATGTCAATGTTCAATAAAATATCCAAGTACGAAGCAGACAATGGAAGACTCTGTGGTGTCGCTT-ATT-CTAGTTTCGTT-GGATATATTGAATCGACAACATGATGGAAATCCATTATTATTGG-AGATAAAA--TCGT-A----ATCGATATATCGAATATAAG-GCCACCGCTAAAGAT-TTTCTTCTTTTCATgtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|2 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggATATAAAATA--GGTCAGCTA--TAAGCAGCACAATTCGTGCCCATTGGGAATTCCAACAGAACTGTTGG-AGACCTGA-TGCCAAAAACTACAACAGATA-TGTCAATGAGgagaagcctttgtgaatgatctggcctaatataagaatataaaataggtcagctataagcagcacaattcgtgcccattgggaattccaacagaactgttggagacctgatgccaaaaactacaacagatatgtcaatgaga
gi|20 : gcaatagataaacgaacagtgatcaaatctgtaagtccctgaatataaatacaaaaacaagagttgggccaaacacggaacccggacataccaagagatgagataggtcctaggaagggtaagatcccctgttaccggtccacaccgccgtcaatcctagtctttgatcggtaacggaacaatccgtagtcaatcagtgtgtgaataacggcctaacaatggttatgaacacatcaaccagcatttgactcaaatggcaggtcaatattggtaactaattgttataatgacgcataaattaacgaaaattctgcccttgaaacgtgactgttgaacccactgcaacaacaacattgtctgtaagtaagcctgctcggattcaaaaaactgatcgtacgcagaacagctctgcgtatgaataagttgagagacatacacccatccaatgcaggtgatgatggaatattgctgcataaatatggaaagttgagtagttagttcgccgtaatgtcaatgttcaataaaatatccaagtacgaagcagacaatggaagactctgtggtgtcgcttattctagtttcgttggatatattgaatcgacaacatgatggaaatccattattattggagataaaatcgtaatcgatatatcgaatataaggccaccgctaaagattttcttcttttcatgagaagcctttgtgaatgatctggcctaatataagaTGCTG-AC-CGGTCACAC-CC-G--C-CGTGAA-TCC-AAAACC-CT-AAG---TAACTAAAC-AAAC-A-a
gi|21 : TAAA-GGAAACAA-ATA-------A-C----GA-------ACAGTG-ATCGA-TT--T-CGTA
gi|22 : ataATCAG--ATGTCTAAGAGG-AGTAAGCATTCCCTGTtaa
gi|23 : TCT-TG-C-GTATCGA--ATATGTTG-AAAGACAT--A
gi|3 : TAAA-GGCAA-AG-ATA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGTAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAGGTAAACGGAAC-AGTCCGTAGTC-AAA-TCAGTGTGTGAAAAACGGCTTAACAATGGTTATGAAACACACCAGACAGCATTTGACTCAA-TGATAGGT-TATATTGGTAAACTAAATTGTAATAACGAC-CATAGAAT
gi|4 : tgTAAA-GGCAA-AG-ACA-------A-C----GA-------ACAGTG-ATCAA-TC--T-CGCAAGTCCT-A---AATATA-A-TACA--AA-AA-CA----AGAGT-TGGGC-AATC-ACGG-A----C-C--CCTGGAC----------A-----CACCA-G-AG-G--TG--G-GATCAG--GTGCCTAGGAGG-AGTAAGCATCCCCTGTTG-AC-CGGTCACAC-CC-G--C-CGTGAG-CCC-ATAGTC-TT-GAT---CAGGTAAACGGAAC-AGTCCGTAGTC-AAA-TCAGTGTGTctataatatgtgtaattatagttatcttatt
gi|5 : gTG---TAATATGGCT-TATAAAT--ATGGA--TTTGACGATGGACGAAGT--GAATCGTGCCCGTTTGGTCATAAAAGT-GAGTAGTTTACGTTTGCCGTTAATGTCATTGTTCATTAAATTATCCAAGTACGAAGCAGA----AGAAGAC-CTTTGGTGTC-CTT-ATT-CTAG-TTCA-TGGGATA
gi|6 : -A-TGTA--AA-AT-CA----AGAGC-AGGATTAAAC-ACA--A----C-C--AC-AGAA----------A-----CAT---G-AG-A--TG--ACGAGTAA--GTGTCTAAAAACCAGTAA-CATTCCATTCTG-AC-ATGCCACAT-CC-A--T-CCTGAG-CCC-TCTGTC--T-GAT---CA-GTAATCGctaaatgcgaatacaaaggtattataatgtat
gi|7 : agaggtgcattatgtaatgttaaaattgataaagataaacaaagactgatgatgtattat-A-TACA--AA-TATCC----AGATA-AGGAC-ACAC-ACGG-AAATAT-C--CCTTAAC----------A-----CACCA-GAAG-G--CT--G-AATCCG--GTGCCTAGG-GG-AGAAGACGGCCCTGGTCA-AC-TGGGCACAC-CCTGCCC-CGCAAG-CCT-ATAA-C-GT-GATTGGCGGGTA
gi|8 : ctacacacacGAGTGTGGGT-AAACGATGG-A----CAT--TCTGG-T----------A-----TACCA-G-AGAG--TG--G-GAACAGTGGTGCCTGGGAGG-A-TAAAGATCCCCTGTCGTACATGGTC-CAC-AC-G--CACGTGAGACCCAATTGTCATT-GAT---CAGGT
gi|9 : TAAACGGCAA-AG-ATACATGATCG-CAGTTGA-------ACTGTG-ATCAC-TC--T-TGCAAGTCCC-----AATAGA-A-TACAGGAA-AA-CG----A-AG--TAGGC---AC-ATAG-A----T-CCGCCTGGACAGATATTCCTA-----CGCCA-G-AG-G--TGCCG-GATgtaatacgaagtaattcg