lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111
lowQualScore : 111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 111 1111 4444444444444 1111 11111 777777777777777777777777777777 1111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 11 1 1 111111 55555555555555555555 444444444444444444444444444444444444444444444444444 111 11 11 22222 11 11111 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 333333333 33333333 1111111111 1 11 1 11111 222222 7777 22 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 1 55555555555555 222 9999999999999999999 1 4444444444444444 1 1 777777777777777777777777777 11 1111111 222 2 4 1
lowQualScore : 888888 3 6666 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 444 9 111 6 1 99 4444 99 5 5 5 5 0000000000000 2222 4 5 77 44444 666666666666666666666666666666 3 6666666 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2222 5 33 2 0 5 88888 111111 66666666666666666666 77 5 5 9 5 5 99 22 66 000000000000000000000000000000000000000000000000000 111 3 0 11 66 66 3 66 6 5 55 00000 44 55 00000 2 4 1 4 777 7 4 1 4 1 4 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 0 666666666 3 99 6 11111111 7 8888888888 5 5 00 777 5 3 66666 555555 6666 888 6 55 7 2 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 6 4 2 5 3 6 7 55555555555555 6 111 6 8888888888888888888 2 0 3 6 6 8888888888888888 0 6 5 3 5 444444444444444444444444444 11 5 0 4 4 6666666 0 3 3 333 6 7 0 5
lowQualScore : ...... . .... . ........................................................................................................................................................................................................................................................................................................................................................................................... .. ... . ... . . .. .... .. . . . . ............. .... . . .. ..... .............................. . ....... . ....................................................................................................................................................................... . .... . .. . . . ..... ...... .................... .. . . . . . .. .. .. ................................................... ... . . .. .. .. . .. . . .. ..... .. .. ..... . . . . ... . . . . . . . .............................................................................................................. .. . ......... . .. . ........ . .......... . . .. ... . . ..... ...... .... ... . .. . . ........................................................................................................ . . . . . . . . .............. . ... . ................... . . . . . ................ . . . . . ........................... .. . . . . ....... . . . ... . . . .
lowQualScore : 888888 1 5555 8 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99 666 3 777 7 0 00 2222 44 7 0 7 7 7777777777777 1111 3 7 99 33333 444444444444444444444444444444 6 2222222 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 6666 7 66 1 5 0 11111 666666 44444444444444444444 99 1 0 0 0 0 55 88 99 333333333333333333333333333333333333333333333333333 333 7 6 99 99 99 7 44 8 3 55 00000 55 00 00000 3 0 9 4 888 4 4 0 0 0 4 7 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 3 888888888 5 22 7 88888888 8 7777777777 0 0 44 000 0 2 55555 222222 7777 000 7 33 3 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 5 0 0 0 0 00000000000000 0 000 0 0000000000000000000 5 5 0 0 0 7777777777777777 7 0 0 2 6 555555555555555555555555555 00 7 2 1 0 2222222 8 2 2 000 0 5 0 5
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTAC------CGA------ATCATCGA-CTA------AA---AATTT---ATANTCCGAGTACTCG----T-T---AAAA--A-T--N-CNT-------TTTN--C-AGTAAA--------NT-----TTAN----AAA---T-----NC--A-C----ACA---TCAG-GT-C---GT--T-T-N----T--G--AG-TAAAA-TCA----TGT-AA--A--G-TANAAG-TCAAAC---C-GTTTT-AATTCGTTCATG-TTCANA-------------TA--AATCAT-TT-GAGTN--T--GGATGTT-GGT-CAG--TAAAACAT--CTCCGA-------AATA--CAC---TG---T--GGA--CATACT------TT--AAAAG-ATCTCATGATG---GAA-AACCGGTGAAAT----GTACAT-NATA-TGAATTAT-GAAA-TTG-AC----CAT---TC----TGT-GGAG--GGACAA-----CAA--AC--ACATAGT-T-TAT--ATTA-AAGGCCGATA-------TT-CGTCAGAATCG-----C--------C--GT---TA---AATTCT-----CT-------------C---GT---AA-----AA---------CG------------AA----C---A--------GAT-NCCGAAA-AAAAA----CANA-------AT---CTTGGTA------TTTGCTG-AC-AAAACTT-A--GAAATAGGCTGTCGACCAAA-T--TAGTTTTTT--AACAAATCG-T------AATA--T-ATGA--AATCGTACATTGAACATACAT-TGG-AAA-G-NCTTTATAAA--TA----------------T-T----------------TTT-------------TATGC-CGTAGTGC-ATTTT--GA--TCGTTGCTTGTNCGACGTTTCATTA--T-----CAAAA-G--AA-----ATTGACCGTTTA-TCT-ACT---TCTCNG-TCACGAGTCAGTGATTCAG-GCGGA-ATA--C----G------G--------T----AATT-----TGGATC--TANTTTNTAAAG-CAC-CCNTC-GTGT---AT-------ACC----T--TC-----GAAG-TTGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCA--C-TCCA-NAATTTTCTCAGAAAAAAAAAAGCATGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAATA-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGAT-GTACTTTTCATGCCAGCGTTCTTTTAAATG-G-----ACCCAAGCCTGTCTGTTGTG-T-CA-AGCTATACGCGTGTAATT-ATCTAGACCGGA---CTATACA------------TGTAATTAATTCAACTGAGCAGNTTTNTAAACGGCNATCTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAAATTAAGTTCAGATAAACAGCCTTTCGGAATTCACCGGTGAANTTCNCTGTNCGCGCGCGCTGAGGTGCATGTTCAGTGT--TG---GATTGATGACTTTGAAACACTCGTACCCTGT-AT-----GTC-GNT--C--TCTCC--TTTTT--ACC-GAGTACTCGACTATCGCTCGG-------CTAAAGTCTCCGAATACTCGACTAAGCTATCCGAGTAAAAGCTGACATCCCT
Reference ( gi|1 ) : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAA------CGA------ATCATCGAGCTA------GA---AATTT---ATACTCCGAGTACTCG----A-T---AAAAC-A-T--T-CAC-------TTTC--C-AGTAAA--------TT-----CTAA----AGA---T-----AC--ACC----ACA---TCAG-GT-CA--AT--T-T-T----T--G--AG-TAAAA-TCA----TGT-AA--A--G-TAGAAA-TGAAAC---CTGTCTT-AATTCGTTCATG-TCCATA-------------TA--AATCA--AT-GAG-A--C--GGATGTTCGGC-CAG--TAAAACAT--CTCTGATG----AGAGA--GAC---TG---T--GGAGGCATACA------TT--AAACG-ATCTCATGTTG---GAA-AACCAATGAAAT----ATACAT-TATA-TGAATTAT-GAAA-TTG-AC----CAA---TC----TGT-GAAG--GGACAA-----CAC--AC--ACATAATATTTAT--ATCA-AGTGCCAATA-------TT-CGTCAGATTCA-----G--------C--AT---CA---AATTCT-----CT-------------C---A----AA-----AA---------CG------------AA----C---A--------GAT-TCCGAAA-CAAAA----CACA-------ATC--CTTGACT------TTTACTG-AC-AAAACTT-A--GAAATGGGCTGTCAACC-AA-T--TAGTTGTTT--AATAAAATA-T------AATA-TTAATGA--AATCGTACATTGAACATACAT-TTG-AAA-G-CCTTTATAAA--TA----------------T------------------TTT-------------TATGC-TGTGGTGA-ATTTT--GA--TTGCTGCCGGTACAACATTTCATCA--T-----CAAAA-G--AA-----ATTGACCGTTTA-TCT-ACT---TCTCCG-TCACAAGGCAATGATTCAG-GCGAACATA--C----G------G--------T----AATT--G--TGGATC--TAATTTTTAAAG-CAC-CCCTC-GTGT---AT-------ACC----G--TT-----GGAA-TTGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACA--C-TCAA-GAAACTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAATATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTGAG-GTACTTTTCATGCTAGCCCACT---------------ACCAAGGCCTGTCTGTCATGAT-TA-AAATATGCTTATGTAATT-ATCTAAACCAGAGACCTATATACAACATTATATATGTCCTTGATTCAATTTAACAAATTTCTAAAAGGCTATCCAGATTGTACTTGTAAATTGGTGTTAGCCTTACAGCTCATCAGCAATATACAAAAGGAATTCCAAGCGACAAACAAAACATTTATGAACAATATGAAAAGCGGAGTGGCTCTTAGAGGAAGGACTTATGTTTAGATAATTATACGTTAAGTATATAAACATGATTAGACGATAATTGAATTAGATTGCAGAAGTAGAGCTCAGATAAACAACCTTTC-------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATGCACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTGT-AT-----GTC-GCT--C--TCCCC--TTTCT--ACC-GAGTATTCGACTATCGCCCGG-------CTAAAGCCTCCGAATACTCGACTTAGCTATCTGAGTACAAATT-ACATCCCT
gi|3 : GTCACCCACTACCCGAATACT-CGACTATCGTTC----GGTTGTAC------CGA-------TCATCCA-CTA-------A---AATTTTT-ATACTC-GAGTACTCG----T-T---AAAA--A-TAGC-CAT-------TT----C-AGTAAA--------TT-----TTAA----AGA---T-----GC--ATC-------------G-GTGCT--AT--T-T-T-------G--AG-TAAAA-TCA----TGG-AA--A--GGTA-AAG-TCAAAC---AAGTTTT-AATTCATTTATG-TTCATA-------------TG--CATCA--TT-TGA-A--TTTGGGTGTT-GAT-CAG--TAAA-CATGCCTCTGA-------AATA--CAC---TG---T--ATGTGCATAT-------TT--AAAGA-ATTTCATGGTA---CAG-AATCGATGAAAT----ATACAT-TATA-TGAATTAT-GAAA-TTG-AA----CAA---TCATTTTGT-GAAG--GGACAA-----CAA--AA--ACATA-----------TTA-AATGCCAATA-------TT-CGTCGGAATCG-----T--------C--AT---CA---AGTTCT-----CT-------------C---A----AA-----AAA--------TG------------AA----C---A--------GATGTCTAAAATCAAAT----TAG-------------CTTGATA------TTTACTG-AC-AAAACTT-A--GAAGCAGGCCGTCAACG-AA-G--TAGTTATTT--AATAAATCG-T------AATA----ATGA--AGTCGTACTTTGAACATACAT-TGT-AAC-G-CCTTTACAAA--TAC---------------T------------------TTT-------------TATGC-CGTAGTGA-ATTTT--GA--TTGTTGCCTGCACAGTATTTCATTA--T-----CAAAC-G--AA-----ATTGACAGTTTA-TAT-ATT---TCACAG-TCACACGTCAACGATTCAG-GCGAACCTT--G----G------A--------T----AATT--A--TGGATC--T-ATTTCTAAAG-CAC-ACCTC-TTGT---ATAACCAACACC----T--TC-----GAAG-TTGTGTAAATGTTCATAAAATCAA-AGTTGCATGGCGCA--CTTCAA-TAATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATGAAAATAAAT
gi|7 : ttagggatGTCAACGAGTA--------CT-CGACTATCGCTC----GGTCG--------------------CAT---ACTA-----------AATTTTTCATACTC-GAGTACTCG----T-T---AAAA--A-T--G-GCC-------TTTT--C-AGTAAA--------TT-----TTAT----AAA---T-----TCTAAAC----ATG---TCAGTGT-T----T--T-T-G----T--A--AA-TAAAA-CCA----TGTCAA--G--G-TACAAAGTAAAAC---CACTTTT-AACTCGTTTATG-TTCAAA-------------TG--CATCAT-TT-GAGTT--T--GGAT-TTTGGT-CAG--TAA--------TCCGATGCCTTCGAAATCCAC---TGCC-T--GG-----T-CA------T-------G-ATCTCGTGATG---GAA-ATCCGGTGAAATGAACGTACAT-CATT-TGAA-AAT-GAAA-TCGAAC----CAGCATTC----T-T-TAGA--GGACAA-----CAA--AC--ATACAGTG--TAT--ATTA-AAGGCCGATG-------TT-CGTTAGAATCG-----C--------C--AT---TA---GATTCT-----CT-------------C---GTT--AA-----GACCTTCAATTCA------------AA----C---ATTTTTGGTGAG-TTCACCA-CAAAAAGGCCAGATAAAAATATCTACTAGATA------TTTGCTGTTC-AAAGCTT-A--AAAATTAGCTATCGACCAAA-T--TAGATTTTA--AACAAATCG-T--------TA--TAATGA--AATCGTACATTGAACATACAT-TGG-AGA-G-ACTTTAT--A--TT----------------T------------------GTT-------------TAGGC-CGCAGAGC-AATTT--GA--
gi|8 : gatGTCAACGAGTA--------CC-CGACTATTGCTC----GGTCATA---------------------CAA-CT-------GA---AGTTTTC-ATAGTC-AAATATTCG----T-C---CAAAC-A-G--T-GTT-------TTTC--T-TGTAAA--------GT-----T--------GA---T-----A----------A-A---TTAA-GT-----GT--T-T-T----T--GTGAG-TAAAACTCG----TGT-AA--A--G-GTCACG-TCAAAT---TTGTTTA-AATCCGTTCATG-TTCATGATCAAATACATTGTA--AATCA--TTTGAG-T--TT-GGATGTCTGACTC----CAAAAT-----TC-----------ACA--G-----TG---T--GG---CGTACT------TT--AAAAG-ATTTCATGTCGTATGAACAACCGGTGAAAT----GTATAT-GATG-TGAATT-T-GAAC-TTG-------CAT---TA----TGT-GGAG--GATCAA-----CAA--ACTTGCATCATATT--------A-AAGGCTGATA-------TC-CGTCAGAATCA-----C--------C--GT---TA---AAATCT-----CT-------------C---
gi|14 : gatGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTAC------CG-------ATCATTGA-CTA------AA---TTTTT---ATAGTCC-AGTATTCA----T-T---AAAA--A-T--A-CCC-------TTTTTAC-AGTAAA--------GT-----TTAT----AAATTTT-----AA--ACA----AT----TCAGTGT------T--TAT-A----T--G--AG-TAAAA-CCA----TGT-AA--A--G-GCAAAG-TCAAAA---C-GTTTT-AATTCATTCATG-CTCAAA-------------TA--AATTAT-TT-TAGTT--T--GGATATT-AGT-CAG--T-AAACAT--gcctttgtcttcaat
gi|19 : cagtgatTACTCGAATATTGTGAATATCGCTC----GGTTATAgcttacaaaatccacagttccag
gi|17 : atTCTAGTACT-CGACTATCGCTC----ATTCGTAC------CG-------ATCATCGA-CT------------AATTT---TT--TTCTAGT-----------T---AGGA--A-C--T-CTT-------TTTG--C-AGTAAA--------GT-----TTAT----GAA---T-----TT--TAA----GCA---TT----T-GA--ATGGT-T-A----T--G--TG-TAAAA-CCA----CGT-A--------TAG-----GTAAC-----GTCAA-AA---GTTCATG-TTCTT--------------------------T-GAGTT--T--GGGTGTTC-GT-CAA--T-AAGCATGCCTTCGA----------A--AACCAATA---T--GGA--CATACT------TT--AAAAT-ATCTctgatactcatatttgcttactgttacaattattttttttaggtttaataatattttgtagtacattcttgtataaatgaagggttcaaagtcaacagttttaattctgttcatgttctaaaagatcattcgcatttgggttttggctcgttaaatcttcgtct
gi|20 : tcaCGAGTACT-CAACTATCGCTT----GAC--TAAAGTCTCCGA------GT-ACCGAG-TA-------A---AATTG---ACACCCtttgat
gi|13 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttacAGTACT-CGACTATCGCCC----GGTCGTAT------CG-------ATCATCGA-CTA------AATTTATTTT---ATAGT-CGAGTACTCGTTACA-TGTAAAAAT-AGT--C-CTT-------TTTT--C-AGTAAA--------GT-----C--------AA---T-----AC--ATTCTAAACACTTTGAA-GT-GG--GT--T-T-TTTGGT--G--AG-TAAAA-TCA----TGT-AA--A--G-------------------GTTTT-AATCCGTTCATG-TTCATA-------------TA--AATCAT-TT-GAGTT--T--GGATGTT-AGT-CAG--T-AAACAT--GCCTCA-A----AAATC--CAC---TGTTTT--GGA--CATACATGTCCTTT--AAAAG-ATATCTTGATG---GAA-Attaag
gi|15 : tcaactAGTACT-CAACTATCGCTC----G---GTGA------CCG------ATCATTGACTTA------AA---TTTTT---ATAGCCC---TATTCG----ATT---AAAACTA-C--C-CTT-------TTTA--C-AGTAAAG-------TT-----TTGAGTTGAAA---TTTTTGAA--ACC----A-A---TT----T-CA--TT--T-TGT----TACG--AGTTAACA-TTATATGTGT-AAACA--G-GACAAAGTCAAAA---C-GTTTTAAATTCATTCATGCTCTA-A-------------TAATAATTAT-TT-TAG-GTTT--GGATATT-AGT-CAGTATAAAACAT--g
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTAC------TGATAATCGATTATTCAGC--------AA---AGTTT---ATAgcttacaaaatcca
gi|11 : ctTACT-CGACTATCGCTC----GGTCGCAT------CGA-------TCATCGA-CTA-----------AATTTTTCATAGTG-GAGTACTTG----T-T---AAAA--A-T--A-AAAGTA----TTTC--C-AGTAAAGTTTATAATT-----CTAA----A-----------------C----ACT---T----GC-TG--TT--T-T-TG---T--G--AG-TAAAA-TCA----TGT-AA--AAGG-TTAAAG-TTAGAC---CGGCTTG-AATGCATTCATG-TTCAAA-------------TA--AATGA--TT-CAA-G--TTTGGATGTT-GGT-CAG--TAAA-CGTGCCTCTAA-------AATC--CAC---TG---T--TTAGGCATACT------TTAGAAATGTATTACATGTattggtaccg
gi|16 : atgtcaatgggTACT-CGACTATCGCTC----AGTCGTAC------TGA-------TAATCGA-CTATTCAGCAA---AGTTT---ATATTT----------------T---TAAAC-A-T--TTCAG-------TTTG--TGAGTAAA--------TTAATTTCTAA----A-----------------C----ACT---TCAG-TT-T----T--T-T-G----T--G--AG-TAAAA-TCA----TGT-AA--A--G-GTGAAG-TCAAAC---CGCTTTT-AATTCTTTGATG-TCAA-A-------------TA--AATgtctataaaattaagctagcattctgtgga
gi|30 : gACT-CGGCTATCGCTCCCGAGGTCGTAC------CG-------ATCATCGA-CTA------AA---TATTT---ttactgtgtttggattgtggtcggttaacatgcctctgaatgccactgttttggacatactttagaaatatatt
gi|5 : gtctagggCTCGGAGTACTTG----A-T---TAAAA-A-A--T-AACAAACCTTTTTT--C-AGTAAA--------GT-----CTAT----AAA---T-----TC----T----A-A---TCAA-TT-CAGTAT--T-T-T----T--GTGAG-TAAAA-TCA----TGA-AA--A--GGTA-AAG-TCAATC---CGGTTTT-AATTCGTTC----TTCATT-------------TG-----CG---T-G------T--GGATGTT-GGT-CAG--TAAA-CAT--GCC-GCCG----AAATC--CAC---TG---TTTGGA--CATACT------TT--AAAAG-ATCTTACGATG---GAA-ACCTGGTGAAAT----G-------ATA-TGAA--AT-TGAA-CTG--C----CAT---TC----CGT-GGAA--TGACAA-----CAA--AC--ACATA-------T--ATTA-AAGGCCGATA-------TT-CGTCAGAATCACAATTGAATTCCCTC--GT---CA---AAGTCTTCATGCTGGTGAGTTTGCCAC---A----AA-----AA---------CACCAAAT------AA----C---A--------GAT-ACCGAAA-ATAAA-------A-------ATGGGCTGGGTA------GTTGCTG-AC-AAAACTT-A--GAAATAGGCTGTCGACCAAA-T--TAGCTTTTT--AGCAA---A-T------AGTA-ATCATGA--AATCGTACATAGGA-ATACAA-TGG-ATG-G-ACCTTATGTT--TGTTTC------------T------------------TTT-------------TATGC-CGTAGCGG-AGTTT--GA--ATGTAGCTCGT---ACATTTCATTA--T-----CAAAA-GA-AA-----ATTGACCGTTTA-ca
gi|25 : atgaatatcaacgagtatggtactcgactatcgT--T-T-G----T--G--AG-TAAAA-TCA----TAT-AA--AG-G-TAT-AA-TAAAACGTATTTTTTT-AAGTCGTTCATG-TTCAAA-------------TT--AATTATGAT-GAGCA--T--AGATATT-GGT-CGG--TGA
gi|2 : cactatgct-ATCTCATGATG---GAA-AATCGGTCGAAT----ATACAT-TACA-TGAATTAT-GAAA-TTA-AG----CAT---TC----TGT-GGAG--GGACAA-----CA---AC---CATG-----TAT--ATTA-AAGGCCAATA-------TT-CGTCAGAATCA-----C--------C--ATATTTA---AATTCT-----CT-------------C---ATCTAAATCTTCAATT-------CG------------AAATAAC---A--------GAT-ACAGAAA-AAAAA-----ATA--------TC--C---------------GCTG-G---AAACTT-A--GAAATAGGTTGAAAACC-AAAT--TAGTTTTTG--AACAAATTG-C------AATA----ATGA--AATCGTACATTGAACATACAT-TGG-AAA-G-ACCTTATAAA--TA----------------TGTTTGCTTGACAAGTTTCTTT-------------TTTGC-CATAGTGC-ATTTT--GA--GTGTTGCTTGTACTACGTTTCATTA--T-----CAAAG-G--AA-----ATTGACTGTTTA-TCT-ACT---ACTCAG-CCACGAGTCAGTGATTCAG-GTGGA-AT---T----G------GCTTCTGAAT----AATT--T--TGTGTC--TATTGTGTTCAG-CAC-CCATC-ATGT---ATCAC----ACC----T--TC-----AAAG-ATGTGTTGATT--CATGAAAA--ATGG---CACGGCGCA--C-TCCATGAATTTTCTCAGAAAAAAAA-----TGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGAATGGAATGCATTTCT----GTCTCACATTGGATATTGAT-GTATTTTTCATGCCAGCGTTCTTGAAAATGAATTA--ACCCAAGCCTGTCTGTTGTGTT-CA-AGCTATACGCATGTAATTGATTT-AACCGGA
gi|6 : ----ATATATCTATAATGAATTATTGCAACTTG-ATATG-CAT---TC----TGTTGAAG--GAACAATCAACCACGTAC--ACGTAGTCTATATTCGTCAGAAT-CTTATAATTTTCTCT-CGTCAAAT--------G--------T--GT---TGGTGAATTCG-----CCA------------C---A----AA-----AA---------CACAGCCACAATAAAA----CCCCA--------GAT-CCAGAAG--AAAA----CATA-------------TTGGCTGGATAGTTTGAAA-AA-AAAACTTTAC-GAAATAGGCTGTCGACC-AA-CAATAGTTTTTTGCAGCAAAATAGC------AATA----ATGA--AATCGTACATTGAACATACTTGTTG-AAG-GATCTATATTAA--TATGCTTTGTTTGTTTTCT------------------TTT-------------TTTGCTTGTGGTGC-ATTTTTGGATGTTACTTTT--TTTGACATTT--TCAATT-----GGAGG-G--AA-----ATTGACTTTTTATTCT-ACT---T---AGTTCACGAGTCAGTGATTCAGAGTGAAAATAGGCTCCAG------A--------T----AATT-----TGAGTC--TTATTGTAATAGCCAC-TATTT-GTATAAAAC-------ACC----T--TC-----AAAG-TTGT-GTGATTTACTTGAAAA----AATCGCAC-GTACA--C-TCCA-AA------TTAGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AATacaaattaagttctaaacagctatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|23 : tgaaatgtatcatgcCAT-AATA-TGAATTAT-AAAA-TTT-GCATAGCAT---TC----T----AAGATGGAC-------CA-----------AAAATGTAT--ATTA-AAGACCGATA-------TTCCGTTAGAATCA-----T--------TTAAT----A---AATTAT-----CT-------------CGTTA----AA-----AA---------TG------------
gi|10 : GCCGATA-------TT-CGTCAGAATCA-----C--------C--A----------ATTCT-----CT-------------C---GTC--AA-----AT---------CT------------T-----C---A--------AAT-----AAA-AAAAA----AAAA-------AT----TTGGTGAA----TTCACCA-AAGAAAACCC-ACCAAAAT--------AACA-GA-T----ACTGC----AATAAAATA-TCGGTTGGATAGTTGCTGACAAA----AC-TTGATCTTAGTT-TTGGAAA-G-ACCTTATAAA--TG----------------TGTCTGCTTGATTCT----TTT-------------CATGC-CATAGTGC-ATTTT--GA--TCGTTGCTTGTACAACATTTCCTTA--TATTCATAAAA-GGAAA-----AATGATTGTGTA-TCT-ACT---TTTCAG-TCACGAGTCAGTGATTCAG-GTGGAtgaattcaaata
gi|26 : gCTG-AC-AAAACTA-A--GAAACAGACTGACGACCAAA-T--AAGTT
gi|27 : ccacaaataccccaaataagagataccgggaaaaatttcgaatggGGCTGTCAACC-AA-T--TAGTTATCT--AATAGGTCG-T------AATA----ATGA--AATCGTACCTTGAACATACGT-TGG-AAA-G-CCTATATATA--Ttcaggaacaaatcgta
gi|9 : aACATACAT-TGG-AAACA-CCTTT-TAAATTTA----------------TATG---------------TTTGCTTGTTTCATTGTATGC-C-TAGAGACATTTT--GA--TTGTTGTTTGCTCAACATTGCATGA--T-----CAAAA-T--AAAAGTTATTGAA----TA-TTT-ACT---TCTCTG-TTACAAATCGGTGATTCGG-TTGAAAGTA--T----GCCGCACG--------T----GA-T--GAATGGATTAATAATTATTATAG-CGCGCCCTC-GCGT---AT-------A
gi|4 : acagagagaactgatcatcggctggacaaatggttgcataaattgaaacaggttgttttccaatattgtccgccaacgtattttaaatagtttcgt-ATTTT--GA--TCATTGCTTGTACAACTTTTCCTTA--TATTCGTAAAA-GGAAA-----AATGATCGTTTA-TCT-ACT---TCTCAG-CCACGAGTCAGTGATTCAG-GTGGA---A--C--------------------T----AGCTCCA--TGGGTC--TATTTTATAAAG-CAC-CCATA-GTGT---AT-------AACACATG--TT-----CAAAGTTGTGTTAATTTTTACGAA---AATAATTGCACGGTGCT--C-TCAG-GAATTTTCTGGGGGGA--AAAAGCACACCCCATGTTTATTTCTCA--AAAAGAAA----GA--------GTTATTAG--ATATTGGAATGAATTTCT----GTCTTATATTGGATATTGAT-GTACTTTTCATGC-AGCGTACTTTTAAATATGAATAAACCCAAACCTGTCTGTTGTAATACA-GAACAC-----TGT------TCTAG---------CTATACA------------TGTAATTAATTCAACTGAACAGTTTTATAAACGGCGATCTAGATatgcaaccctcaaagtgaatttgaatgtcatgaaa
gi|7 : TGCTGGTTCGA--TTTCATTT--T-----CAAAT-G--A--------TGTACGTTCA-TTTCACCGGATTTCCA-TCACGAGATCATGA-CCAG-GCaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|21 : gatgtcaacgagtactcgactatcgctcggtcgcatactaaatttttcatactcgagtactcgttaaaaatggccttttcagtaaattttataaattctaaacatgtcagtgtttttgtaaataaaaccatgtcaaggtacaaagtaaaaccacttttaactcgtttatgttcaaatgcatcatttgagtttggattttggtcagtaatccgatgccttcgaaatccactCTGGTGCAATGTTTCAATA--C-----CAAAGTA--AA-----ATTG-CCGTTTA-T----CT---TCTCTG-TCACGAGTTAGTTATTCAG-TTGGA-ACT--C----G------G--------TCCCCAA--------GGA----TAG-----AACG-CACACCTTCAAAGT---A--------A------G--GT-----GG-A-T-----TAATTTCCTTGGAAA-AAT-GTT---CGGCGCATCC-TT-T-TAATTTTCTTAGAAA---AACAACATGCTCTATGTTTAttctttagaggacaacaaacatacagtgtatattaaaggccgatgttcgttagaatcgccattagattctctcgttaagaccttcaattcaaacatttttggtgagttcaccacaaaaaggccagataaaaatatctactagatatttgctgttcaaagcttaaaaattagctatcgaccaaattagattttaaacaaatcgttataatgaaatcgtacattgaacatacattggagagactttatatttgtttaggccgcagagcaatttga
gi|24 : ATTA--T-----CAAAA-G--AA-----ATTGACCGTTTA-TCT-TAT---TCTCCG-TCATAAATCAAT------G-GCTAAT-TA--T--------------------C----AATT-----T-GATC--TATTGTGTAAAC-CAC-----------------------ACC----T--TC-----GAAG-TTGTGTTAATTTTTATGAc
gi|28 : --TGGATC--TGTTGTATAAAG-CAC-CATCA-GTGT---AT-------AAC----GCATTCCTCCGAAG-TTGTGTTACTTTTCATTAAAA
gi|12 : GCGCA--C-TCCA-AGAATTTTT---AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGAT------AAA-------GAATACATTTCTG----TCTTATACTA---ATTGAATATACCTT-CATGCTATCTTTCTTTTTAA---------ACCCAAGCCTGTCTGTTGTG-T-CATAGCTATACATGTGTAATT-A
gi|20 : ataATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATatgccactgctagtctgtacatatttgtaaacggttatcctgatttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|2 : tgttctagctatacatgtgtaataaaTAATTGATTTAACCGGAACAAATTAAGTTC---TAAACAGCT-----------ATCGG---AGTTCCCTATGTGCGCGCGCTGAGGTATAT------------------TTGATGACTTTGAAACACTCATACCCTGT-CA-----GTC-CCC--C--CCCCCCCTTTTA--ACA-GCACACTCGACTATCGCTCAA-------TTAA-GCCACCAAGTACTCAACTAAGCTATCCGAGTA-AAATTGACATCCCTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|4 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgAGATAAACAGCCTTTCGGAATTCACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTTCAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTCATTTTGGGTT-GGTGGT--TTTTT--TTTTT--ACT-GAGTATTCAACTATAACTCCA-------CTAAACTATCCGAATAa
gi|12 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgtaattaattcaactgaacagttttataaacggcgatctGTATGATTGATGACTTTGAAACACTAGTACACTGT-aaaaactgacatctctaat
gi|20 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgtaaacggttatcctgatttcaccagtgatgcgcgctgaaCTTTGAGATACTTTTAC----C-AT-----GTCAGTT--CGTTTTTT--TTTTT--ACC-GAGTACTCAACTATCGCTTGA-------CTAAAGTCTCCGAGTAC-CGAcagttccc
gi|18 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgTGAAATACTTCTTCTCTGC---------CC-AGT--A--TCTCC--CTTCTTAACC-GA-TACTAGACTATAGATCGA-------CTAAAGCCTCAGAAAACTCGG-TAAGCTATCCGAGTAAAAGCTGAC-TCCCTgtaaaattgacacccttaag
gi|3 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgctCT--ACCCGAATACTCGACTATCGTTCGG-------TTa
gi|7 : ttagggatgtcacccaC-GAGTACTCGACTATCGCTCGGTCGCATACTAAATTTTTC--ATACTCGAgtaccgatcatccactaaaatttttatactcgagtactcgttaaaaatagccatttcagtaaattttaaagatgcatcggtgctattttgagtaaaatcatggaaaggtaaagtcaaacaagttttaattcatttatgttcatatgcatcatttgaatttgggtgttgatcagtaaacatgcctctgaaatacactgtatgtgcatatttaaagaatttcatggtacagaatcgatgaaatatacattatatgaattatgaaattgaacaatcattttgtgaagggacaacaaaaacatattaaatgccaatattcgtcggaatcgtcatcaagttctctcaaaaaatgaacagatgtctaaaatcaaattagcttgatatttactgacaaaacttagaagcaggccgtcaacgaagtagttatttaataaatcgtaataatgaagtcgtactttgaacatacattgtaacgcctttacaaatactttttatgccgtagtgaattttgattgttgcctgcacagtatttcattatcaaacgaaattgacagtttatatatttcacagtcacacgtcaacgattcaggcgaaccttggataattatggatctatttctaaagcacacctcttgtataaccaacaccttcgaagttgtgtaaatgttcataaaatcaaagttgcatggcgcacttcaataattttctcagaaaaagaaaaacgtgccccgtgtttattttatatttacagaaacaatgaaataagatgaaaataaat
gi|11 : gatgtcaa-GGGTACTCGACTATCGCTCGG-------gtactcgttaaaaatggccttttcagtaaattttataaattctaaacatgtcagtgtttttgtaaataaaaccatgtcaaggtacaaagtaaaaccacttttaactcgtttatgttcaaatgcatcatttgagtttggattttggtcagtaatccgatgccttcgaaatccactgcctggtcatgatctcgtgatggaaatccggtgaaatgaacgtacatcatttgaaaatgaaatcgaaccagcattctttagaggacaacaaacatacagtgtatattaaaggccgatgttcgttagaatcgccattagattctctcgttaagaccttcaattcaaacatttttggtgagttcaccacaaaaaggccagataaaaatatctactagatatttgctgttcaaagcttaaaaattagctatcgaccaaattagattttaaacaaatcgttataatgaaatcgtacattgaacatacattggagagactttatatttgtttaggccgcagagcaatttga
gi|13 : atgtcaatAGTACTCGACTATCGCCCGG-------tcgcatcgatcatcgactaaatttttcatagtggagtacttgttaaaaataaaagtatttccagtaaagtttataattctaaacacttgctgtttttgtgagtaaaatcatgtaaaaggttaaagttagaccggcttgaatgcattcatgttcaaataaatgattcaagtttggatgttggtcagtaaacgtgcctctaaaatccactgtttaggcatactttagaaatgtattacatgtgtctataaaattaagctagcattctgtgga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TACTCGAATATTGAATATCGCTCGGTTATACTGATACTCATATTTGATTACTTGTTAACAATTTTTTTTTTTAGTTTAATAATATTATTTTTAGTACATTGTATAAACTTAAGGGTAAAGTCAAACCAGTTTTAATTCGTTCA
Unaligned ( gi|31 ): TCAGTGTTTTGTAAGTGAAAACTATGTAATGGTCAAATCAAACCGGTTTTAA
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 2222 333333333333333333333333333 222222222222 000000000000000000000000000000000000 111111 33333333333333 111111111 1111111111111 333333333333 111 222222 111111 11111111111 111111 5555555555 333333333333333333 1111 1111111 3333333333333333333 11111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333 111111 000000000000000000000000 2222222222222 11 22222 11 11111 77777777777777777777777777777777777777777 4444444444444444444444444444444 11111 111 222222 1111 333333 2222 1 8888888888888888888 111 22 1111 99999999999999999999999999999999999999999 4444444444 22 33333333333333333 11 99999999999999999 444444444444 111 11 111111 1
lowQualScore : 0 0 2 5555 2 9999 3 2 777777777777777777777777777 2 3 888888 111111111111 3 1 3 1 555 44 6666 3 777777777777777777777777777777777777 2 33 33 5 2 5555 2 000000 2 55555555555555 5 1 444444444 5 2 33 6666666666666 555 1 77 3 1 3 3 44 444444444444 6 666 333 777777 888 222222 0 0 1 9999 1 99999999999 333333 4 4 4 4 3333333333 4 0 5 444444444444444444 0000 4444444 4 4 0 6666666666666666666 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 666 0 3 888 1 1 8888 3 88888 4 55 8888888 222222 4 66 9999 4 4 1 66 55 777777777777777777777777 5 7777777777777 0 55 5 66 6 5 00 3 55 00000 4 55 00000 2 4 1 4 4 0 4 99999999999999999999999999999999999999999 0 66 77 1 2 4 4 5555555555555555555555555555555 11111 9999 5 555 888888 88 8888 6 6 3 0 44 66 111111 1111 2 0 3 2 2 4 3333333333333333333 444 3 11 8 3 7777 777 8 11 8 11 33333333333333333333333333333333333333333 666 1 2 22 1 1 0 6 4 3333333333 4 00 6 44444444444444444 4 6666 2 00 33333333333333333 55 1 999999999999 1 222 3 11 3 0 4 0 0 4 3 22 222222 1 8 6 0
lowQualScore : . . . .... . .... . . ........................... . . ...... ............ . . . . ... .. .... . .................................... . .. .. . . .... . ...... . .............. . . ......... . . .. ............. ... . .. . . . . .. ............ . ... ... ...... ... ...... . . . .... . ........... ...... . . . . .......... . . . .................. .... ....... . . . ................... ..... ......................................................................................................... . ... . . ... . . .... . ..... . .. ....... ...... . .. .... . . . .. .. ........................ . ............. . .. . .. . . .. . .. ..... . .. ..... . . . . . . . ......................................... . .. .. . . . . ............................... ..... .... . ... ...... .. .... . . . . .. .. ...... .... . . . . . . ................... ... . .. . . .... ... . .. . .. ......................................... ... . . .. . . . . . .......... . .. . ................. . .... . .. ................. .. . ............ . ... . .. . . . . . . . .. ...... . . . .
lowQualScore : 7 1 7 7777 6 6666 2 7 222222222222222222222222222 1 1 888888 444444444444 1 0 1 0 444 22 4444 1 777777777777777777777777777777777777 7 77 77 3 7 7777 7 333333 7 99999999999999 3 1 999999999 3 9 88 9999999999999 222 4 33 1 0 1 1 22 888888888888 7 444 555 000000 888 888888 8 7 1 4444 6 00000000000 777777 4 4 4 4 8888888888 4 2 0 555555555555555555 6666 4444444 4 4 7 4444444444444444444 11111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 666 1 6 000 4 4 1111 4 22222 0 55 3333333 888888 4 11 4444 4 4 0 11 44 666666666666666666666666 0 5555555555555 4 22 0 11 2 3 77 4 55 00000 0 00 00000 3 4 0 4 4 7 4 88888888888888888888888888888888888888888 1 11 77 7 6 4 4 9999999999999999999999999999999 11111 4444 7 777 444444 00 6666 7 7 2 8 22 22 555555 2222 5 0 2 5 5 0 5555555555555555555 000 2 00 0 2 8888 444 0 44 0 11 00000000000000000000000000000000000000000 222 4 8 44 0 0 7 7 7 7777777777 7 77 5 55555555555555555 5 0000 0 88 22222222222222222 88 0 777777777777 0 444 2 00 2 8 6 8 8 8 2 88 666666 0 0 4 8
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA---TCATCGA-CTA------AA---ANTTT-ATANTC-GAGTACTCG-TTA------AAA--ATN---CT--T-TTTNC-AGTAAAGT---TT--AT---AAA-TTC-----AC-AC-----A---TCAG--GTT------T-TTG-T--GAGT-AAAA-TCAT----GT-A------A-A-------G---TA-AA-GTCAAACC-G-T-----TTT-AATTC-GTTCATGTTCAAA-------------TA--AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAA---AACATGCCTC-CGA---AAT--CCACTG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGTAGT--NTATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGC-------------CGT---TAAATTCT-----CTCG-T------------AA-----AA------------CG------AA----CA--------GA---TACCGAAAA--AAAAC------ANAAT-----C-TNGAT--A-TTTGCTG-ACAAAACTT-A-GAAATAGGCTGTCGACCAA-ATTAGTTNT-TT--AACAAA-T--CGTAATA------AT------GA-AATCGT--ACA----TT-GAACATA-CATTG--GAAAGA-CCTTATAAAT----ATGTCT--TT----------TT-TT-------------TATGCC-GTAGTG-CATTTT--GATCGTTGCTTGTAC-AACATTTC--ATTAT-----CAAAA-G--AA-----ATTGACCGTTTAT-CTACTTCTCNGT-CACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNCTTTTA------AATG----AACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TTCACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGT-AN-----GT--CGNT--CTCTCCTTTTT--ACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
Reference ( family-1442 ) : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-A-TCATCGA-CTA------AA---AATTT-ATANTCCGAGTACTCG-TTA------AAA--ATN---CN--T-TTTNC-AGTAAANT---TT--AN---AAA-TNC-----AC-AC-----A---TCAG--GTCG-----T-TTN-T--GAGT-AAAA-TCAT----GT-A------A-A-------G---TANAA-GTCAAACC-G-T-----TTT-AATTC-GTTCATGTTCANA-------------TA--AATCATT--TGA-GTNTGGATGTT-GG-TCAG--TAA---AACAT--CTC-CGA---AAT--ACACTG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACATAGT--TTATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGC-------------CGT---TAAATTCT-----CTCG-T------------AA-----AA------------CG------AA----CA--------GA---TNCCGAAAA--AAAAC------ANAAT-----C-TTGGT--A-TTTGCTG-ACAAAACTT-A-GAAATAGGCTGTCGACCAA-ATTAGTTTT-TT--AACAAA-T--CGTAATA---T--AT------GA-AATCGT--ACA----TT-GAACATA-CATTG--GAAAGN-CTTTATAAAT----AT------------------TT-TT-------------TATGCC-GTAGTG-CATTTT--GATCGTTGCTTGTNC-GACGTTTC--ATTAT-----CAAAA-G--AA-----ATTGACCGTTTAT-CTACTTCTCNGT-CACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TANTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-N-AATTTTCTCAGAAAAAAAAAAGCATGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCGTTCTTTTA------AATG----GACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACGCGT-GTAATT-ATCTAGACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAGCAGNTTTNTAAACGGCNATCTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAAATT----AA----GTTC-AGATAAACAGCCTTTCGGAATTCACCGGTGAANTTCNCTGTNCGCGCGCGCTGAGGTGCATGTTCAGTGT--TG---GATTGATGACTTTGAAACACTCGTACCCTGT-AT-----GT--CGNT--CTCTCCTTTTT--ACCGAGTACTCGACTATCGCTCGGCTAAAGTCTCCGAATACTCGACTAAGCTATCCGAGT-AAAAGCTGACATCCCT
gi|1 : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAACGA-A-TCATCGAGCTA------GA---AATTT-ATACTCCGAGTACTCG-ATA------AAAC-ATT---CA--C-TTTCC-AGTAAATT---CT--AA---AGA-TAC-----ACCAC-----A---TCAG--GTCAA----T-TTT-T--GAGT-AAAA-TCAT----GT-A------A-A-------G---TAGAA-ATGAAACCTG-T-----CTT-AATTC-GTTCATGTCCATA-------------TA--AATCAAT---GA-G-ACGGATGTTCGG-CCAG--TAA---AACAT--CTC-TGATGAGAG--AGACTG---T--GGAGGCATA------CATTAAACGATCTCATG----TTGGAAAACCAATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGA----C----CAATCTGT-GAAGGGACAA-CAC------ACACATAATATTTATATC----AAGTGCCAATA-------TT-CGTCAGATT-CAG-------------CAT---CAAATTCT-----CTCA--------------AA-----AA------------CG------AA----CA--------GA---TTCCGAAAC--AAAAC------ACAAT-----CCTTGAC--T-TTTACTG-ACAAAACTT-A-GAAATGGGCTGTCAACC-A-ATTAGTTGT-TT--AATAAA-A--TATAATA---TTAAT------GA-AATCGT--ACA----TT-GAACATA-CATTT--GAAAGC-CTTTATAAAT----A-------------------TT-TT-------------TATGCT-GTGGTG-AATTTT--GATTGCTGCCGGTAC-AACATTTC--ATCAT-----CAAAA-G--AA-----ATTGACCGTTTAT-CTACTTCTCCGT-CACAAGGCAATGATTCAG-GCG-AACA-TA--C----G------G--------T----AA-TTG--TGGATC--TAATTTTTAA-AG-CAC-CCCTC-GTGT---AT-------A-------CC-----GTTGGAAT----TGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACACTCA--A-G-AAACTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAAT--ATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTGA-GGTACTTTTCATGCTAGCCCACT-------------------ACCAAGGCCTG---TCTGTCATGATTA-AAATAT---GCTTAT-GTAATT-ATCTAAACCAGAGACCTATATACAACATTATATATGT--CCTTGA-TTCAATTTAACAAATTTCTAAAAGGCTATCCAGAT
gi|1 : TAATTGAATTAGATTGCAGAAGTA----GA----GCTC-AGATAAACAACCTTTC-------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATGCACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTGT-AT-----GT--CGCT--CTCCCCTTTCT--ACCGAGTATTCGACTATCGCCCGGCTAAAGCCTCCGAATACTCGACTTAGCTATCTGAGT-ACAAATT-ACATCCCTtgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgataattgaattagattgcagaagtagagctcagataaacaacctttcaccagttaacttcgctattcgtatgcgccgaggtacatgcacatgtaatgtatgactaatgactgtgaaacacttgtacactgtatgtcgctctcccctttctaccgagtattcgactatcgcccggctaaagcctccgaatactcgacttagctatctgagtacaaattacatccct
gi|10 : gtcaacgagtattcgaatactcgactatcgctcggtcgtaacgaatcatcgagctagaaatttatactccgagtactcgataaaacattcactttccagtaaattctaaagatacaccacatcaggtcaatttttgagtaaaatcatgtaaagtagaaatgaaacctgtcttaattcgttcatgtccatataaatcaatgagacggatgttcggccagtaaaacatctctgatgagagagactgtggaggcatacattaaacgatctcatgttggaaaaccaatgaaatatacattatatgaattatgaaattgaccaatctgtgaagggacaacacacacataatatttatatcaagtgccaatattcgtcagattcagcatcaaattctctcaaaaacgaacagattccgaaacaaaacacaatccttgacttttactgacaaaacttagaaatgggctgtcaaccaattagttgtttaataaaatataatattaatgaaatcgtacattgaacatacatttgaaagcctttataaatatttttatgctgtggtgaattttgattgctgccggtacaacatttcatcatcaaaagaaattgaccgtttatctacttctccgtcacaaggcaatgattcaggcgaacatacggtaattgtggatctaatttttaaagcacccctcgtgtataccgttggaattgtggtaattttcatgaaaagaatagttgcacggcacactcaagaaacttctcagaaaaagaaaaacgtgtcccatgtttagttcacatgaacagaaacaatgaaataagatgtaaataaatatattggaatgcatttctgcacgtcttgtgttggatattgaggtacttttcatgctagcccactaccaaggcctgtctgtcatgattaaaatatgcttatgtaattatctaaaccagagacctatatacaacattatatatgtccttgattcaatttaacaaatttctaaaaggctatccagattgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgaGGCCGATA-------TT-CGTCAGAAT-CAC-------------C-------AATTCT-----CTCG-T------------CA-----AA------------TC------TT----CA--------AA---T----AAAA--AAAAA------AAAAT-------TTGGTGAA-TTCAC----CAAA-------GAAA------ACCCACCAA-A--A-------T--AACAGA-TACTGCAATAAAAT--ATCGGTTGGATAGTTGCTGACAAAACTT-GATCTTAGTTTTG--GAAAGA-CCTTATAAAT----GTGTCTGCTTGATTC-----TT-TT-------------CATGCC-ATAGTG-CATTTT--GATCGTTGCTTGTAC-AACATTTC--CTTATATTCATAAAA-GGAAA-----AATGATTGTGTAT-CTACTTTTCAGT-CACGAGTCAGTGATTCAG-GTG-GA-
gi|11 : GGGTACT-CGACTATCGCTC----GGTCGCATCGA---TCATCGA-CTA------AA---TTTTTCATAGTG-GAGTACTTG-TTA------AAA--ATA---AAAGTATTTCC-AGTAAAGT---TT--AT---AAT-TCT-----AA-AC-----A---CTTGCTGTT------T-TTG-T--GAGT-AAAA-TCAT----GT-A------A-AAG-----G---TTAAA-GTTAGACC-G-G-----CTTGAATGC-ATTCATGTTCAAA-------------TA--AATGATT--CAA-GTTTGGATGTT-GG-TCAG--T-A---AACGTGCCTC-TAA---AAT--CCACTGTT-T--AGG--CATA------CTTTA-----------------------------GAAATG----T-------ATT-----ACA-TGTGTCTAT-AAAA-TTAAG---CTAG-CATTCTGT-GGA
gi|12 : atgtcaatGCGCACTCC--A-AGAATTTTT----AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGATAAA---------------GAATACATTTCT----GTCTTATACTA---ATTGAATATACCTT-CATGCTATCTTTCTTTTT------AA-------ACCCAAGCCTG---TCTGTTGTG-TCATAGCTAT---ACATGT-GTAATT-A---ATGCC-----------------ACTGC-----T--AGT---------CTGTACATATTTGTAAACGGTTATCCTGAT
gi|12 : ataTAAACGGTTATCCTGATTTCACCAGTGA-------------TGCGCGCTGAAGT--ATG----------------ATTGATGACTTTGAAACACTAGTACACTGT-ttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|13 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgAGTACT-CGACTATCGCCC----GGTCGTATCGA---TCATCGA-CTA------AATTTATTTT-ATAGTC-GAGTACTCG-TTACATGTAAAA--ATAGTCCT--T-TTTTC-AGTAAAGT---CA--AT---ACA-TTCTAA--AC-ACTTTGAA---GTGG--GTTT-----T-TTGGT--GAGT-AAAA-TCAT----GT-A------A-A-------G------------------G-T-----TTT-AATCC-GTTCATGTTCATA-------------TA--AATCATT--TGA-GTTTGGATGTT-AG-TCAG--T-A---AACATGCCTC-AAA---AAT--CCACTGTTTT--GGA--CATACATGTCCTTTAAAAGATATCTTG----ATGGAAAcagttccc
gi|14 : tcaactGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTACCGA---TCATTGA-CTA------AA---TTTTT-ATAGTCC-AGTATTCA-TTA------AAA--ATA---CCCTT-TTTAC-AGTAAAGT---TT--AT---AAA-TTTT----AA-AC-----AAT-TCAG----TG-----T-TTA-TATGAGT-AAAA-CCAT----GT-A------A-A-------G---GCAAA-GTCAAAAC-G-T-----TTT-AATTC-ATTCATGCTCAAA-------------TA--AATTATT--TTA-GTTTGGATATT-AG-TCAG--T-A---AACATG-CTTACAA---AAT--CCACAG---T--g
gi|15 : cagtgatAGTACT-CAACTATCGCTC----GGT-G-ACCGA---TCATTGA-CTT------AA---ATTTTTATAGCCC---TATTCGATTA------AAACTACC---CT--T-TTTAC-AGTAAAGT---TTTGAGTTGAAA-TTTTTGAAAC--C-----AATTTCAT--TTTG-----T-T-A-C--GAGTTAACA-TTATATGTGT-A------A-ACA-----G---GACAAAGTCAAAAC-G-T-----TTTAAATTC-ATTCATGCTCTAA-------------TAATAATTATT--TTAGGTTTGGATATT-AG-TCAGTATAA---AACATG-CTTACAA---AAT--CCAtccag
gi|16 : GTACT-CGACTATCGCTC----AGTCGTACTGA---TAATCGA-CTATTCAGCAA---AGTTT-ATATTT-----------TTA------AAC--ATTT--CA--G-TTTGTGAGTAAATTAATTT--CT---AAA----------C-AC-----T---TCAG--TTT------T-TTG-T--GAGT-AAAA-TCAT----GT-A------A-A-------G---GTGAA-GTCAAACC-GCT-----TTT-AATTC-TTTGATG-TCAAA-------------TA--AAT--TTACTGT-GTTTGGATTGT-GG-TCGG--T-T---AACATGCCTC-TGA---ATG--CCACTGTTTT--GGA--CATA------CTTTAGAA
gi|17 : TCTAGTACT-CGACTATCGCTC----ATTCGTACCG--A-TCATCGA-CT------------AATTT-TT--------TTCTAG-TTA------GGA--ACT---CT--T-TTTGC-AGTAAAGT---TT--AT---GAATTTT-----AA-GC-----A---TTTG--AATG-----G-TTA-T--GTGT-AAAA-CCAC----GT-AT-----A-G-------G---TA-AC-GTCAAA---------------A-----GTTCATGTTC-------------------------TT--TGA-GTTTGGGTGTT-CG-TCAA--T-A---AGCATGCCTT-CGA---AAA--CCAATA---T--GGA--CATA------CTTTAAAATATCTTTTG----ATatatatt
gi|18 : tcaACCCAAGTGTGCCATCTGTT----TCA-AGCTA----ACACGTGGTACTT-AT
gi|18 : aTTGAAATACTTCTTCTCTGC---------C--CAGT--ATCTCCCTTCTTAACCGA-TACTAGACTATAGATCGACTAAAGCCTCAGAAAACTCGG-TAAGCTATCCGAGT-AAAAGCTGAC-TCCCTattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcttgaaatacttcttctctgcccagtatctcccttcttaaccgatactagactatagatcgactaaagcctcagaaaactcggtaagctatccgagtaaaagctgactcccta
gi|19 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcTACTCGAATATTGTGAATATCGCTC----GGTTATACTGATACTCAT-------------------ATTT-G--CT-----TACT-G-TTA------CAA--TTA---TT--T-TTTTT-AG----GT---TT--AA---TAA-T-----------------A---T--------------T-TTG-T---AGT-ACAT-TCTT----GT-ATAAATGA-A-------GGGTTCAAA-GTCAA-CA-G-T-----TTT-AATTCTGTTCATGTTCTAA-------------AA--GATCATT--CGC-ATTTGGGTTTT-GGCTCGT--TAA------AT--CTT-CGa
gi|2 : atATCTCATG----ATGGAAAATCGGTCGAATA----TA-----CATT-----ACA-TGAAT-TAT-GAAA-TTAA----G----CATTCTGT-GGAGGGACAA-CAA------CCA-----T--GTATATT----AAAGGCCAATA-------TT-CGTCAGAAT-CAC-------------CATATTTAAATTCT-----CTCA-TCTA---------AATCTTCAATT----------CG------AAATAACA--------GA---TACAGAAAA--AAAA----------------------AT--A-TCCGCTG-G--AAACTT-A-GAAATAGGTTGAAAACCAA-ATTAGTTTT-TG--AACAAA-T--TGCAATA------AT------GA-AATCGT--ACA----TT-GAACATA-CATTG--GAAAGA-CCTTATAAAT----ATGTTTGCTTGACAAGTTTCTT-TT-------------T-TGCC-ATAGTG-CATTTT--GAGTGTTGCTTGTAC-TACGTTTC--ATTAT-----CAAAG-G--AA-----ATTGACTGTTTAT-CTACTACTCAGC-CACGAGTCAGTGATTCAG-GTG-GA-A-T---T----G------GCTTCTGAAT----AATTT---TGTGTC--TATTGTGTTC-AG-CAC-CCATC-ATGT---ATCAC----A-------CC-----TTCAAAGA----TGTGTTGA--TTCATGAAAA-A----TGGCACGGCGCACTCC--ATG-AATTTTCTCAGAAAAAAA-----ATGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGA-A-TGGAATGCATTTCT----GTCTCACATTGGATATTGA-TGTATTTTTCATGCCAGCGTTCTTGAA------AATGAATTAACCCAAGCCTG---TCTGTTGTGTTCA-AGCTAT---ACGCAT-GTAATTGATTTA-ACCGG---------------A----ACA-----AATTAAGTT---CTAAACAGCTtct
gi|2 : TAATTGATTTAACCGGAACAAATT----AA----GTTC----TAAACAG-CTATCGG-------------AGTTCCCTATGTGCGCGCGCTGAGGTATAT------------------TTGATGACTTTGAAACACTCATACCCTGT-CA-----GTCCCCCC--CCCCCCTTTTA--ACAGCACACTCGACTATCGCTCAATT-AAGCCACCAAGTACTCAACTAAGCTATCCGAGT-AAAA-TTGACATCCCTatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|20 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgCTATACATGTGTAATAAAATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATa
gi|20 : tgttctagCTTTGAGATACTTTTACCATGTCAG-----TT--CGTT--TTTT--TTTTT--ACCGAGTACTCAACTATCGCTTGACTAAAGTCTCCGAGTA--------------CCGAGT-AAAA-TTGACACCCTTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|21 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgCTGGTGC-AATGTTTC--AATAC-----CAAAGTA--AA-----ATTG-CCGTTTAT-CT---TCTCTGT-CACGAGTTAGTTATTCAG-TTG-GA-A-CT--C----G------G--------TCCCCAA-------GGAT--------------AG-AAC---------GC---AC-------A-------CC-----TTCAAAGTAAGGTGGATTAATTTCCTTGGAAA-AAT-GTT---CGGCGCA-TCCTTT-T-AATTTTCTTAGAAAAACAA---CATGCTCTATGTTTAaag
gi|22 : TACTCGAATATT--GAATATCGCTC----GGTTATACTGA------------TA-------------CTC-ATATTT-GATTACTTG-TTA------ACA--ATT---TT--T-TTTTT---TA--GT---TT--AA---TAA-T-----------------A---TTA------------T-TTT-T---AGT-ACA--TTGT----AT-A------A-ACTTAAGGG---TA-AA-GTCAAACCAG-T-----TTT-AATTC-GTTCAc
gi|23 : -----CATA-----ATA-TGAAT-TAT-AAAA-TTTG----CATAGCATTCTA--AGATGGAC---CAA------A-----AAT--GTATATT----AAAGACCGATA-------TTCCGTTAGAAT-CAT-------------T-TAA-TAAATTAT-----CTCGTT------------AA-----AA------------
gi|24 : --ATTAT-----CAAAA-G--AA-----ATTGACCGTTTAT-CTTATTCTCCGT-CATAAATCAATG-------GCT-AA-T-TA--T--------------------C----AA-TT---TG-ATC--TATTGTGTAA-AC-CAC-----------------------A-------CC-----TTCGAAGT----TGTGTTAATTTTTATGAatgtgaattcaaata
gi|25 : -----T-TTG-T--GAGT-AAAA-TCAT----AT-A------A-A-------GG--TATAA---TAAAAC-G-TATTTTTTT-AAGTC-GTTCATGTTCAAA-------------TT--AATTATGA-TGA-GCATAGATATT-GG-TCGG--TGA---
gi|26 : cactatgct------AA----GA--------GA---TACCGGGAA--AAA------------T-----T-TCG----A-ATGGCTG-ACAAAACTA-A-GAAACAGACTGACGACCAA-ATAAGTTTCAGG--AACAAA-T--CGTA
gi|27 : ccacaaataccccaaatAGGCTGTCAACCAA--TTAGTTAT-CT--AATAGG-T--CGTAATA------AT------GA-AATCGT--ACC----TT-GAACATA-CGTTG--GAAAGC-CTATATATAT----
gi|28 : ---TGGATC--TGTTGTATAA-AG-CAC-C-ATCAGTGT---AT-------AACGCATTCC-----TCCGAAGT----TGTGTTACTTTTCATTAAAA-
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTACTG--A-TAATCGA-TTATTCAGCAA---AGTTT-ATAAT
gi|3 : ctTACCCGAATACT-CGACTATCGTTC----GGTTGTACCGA---TCATCCA-CTA------AA---ATTTTTATACTC-GAGTACTCG-TTA------AAA--ATA---GC--C-ATTTC-AGTAAATT---TT--AA---AGA-TGC-----A-------------TC-G--GTGC-----TATTT-T--GAGT-AAAA-TCAT----GG-A------A-A-------GG--TA-AA-GTCAAACAAG-T-----TTT-AATTC-ATTTATGTTCATA-------------TG--CATCATT--TGA-ATTTGGGTGTT-GA-TCAG--TAA---A-CATGCCTC-TGA---AAT--ACACTG---TATGTG--CATA-------TTTAAAGAATTTCATG----GTACAGAATCGATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGAACAAT----CATTTTGT-GAAGGGACAA-CAA------AAACATA---------TT----AAATGCCAATA-------TT-CGTCGGAAT-CGT-------------CAT---CAAGTTCT-----CTCA-A------------AA-----AA------------TG------AA----CA--------GA---TGTCTAAAATCAAATT------AG--------C-TTGAT--A-TTTACTG-ACAAAACTT-A-GAAGCAGGCCGTCAACGAA-GT-AGTTAT-TT--AATAAA-T--CGTAATA------AT------GA-AGTCGT--ACT----TT-GAACATA-CATTG--TAACGC-CTTTACAAAT----AC------------------TT-TT-------------TATGCC-GTAGTG-AATTTT--GATTGTTGCCTGCAC-AGTATTTC--ATTAT-----CAAAC-G--AA-----ATTGACAGTTTAT-ATATTTCACAGT-CACACGTCAACGATTCAG-GCG-AA-C-CT--T----G------GA-------T----AA-TTA--TGGATC--TA-TTTCTAA-AG-CAC-ACCTC-TTGT---ATAACCAACA-------CC-----TTCGAAGT----TGTGTAAATGTTCATAAAAT-CAAAGTTGCATGGCGCACTTCA-A-T-AATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATGAAAATAAAT--tggtaccg
gi|30 : ttagggatgtcacccacACT-CGGCTATCGCTCCCGAGGTCGTACCGA---TCATCGA-CTA------AA---TATTT-
gi|31 : gtctaggg---TCAGT-GT-------T-TTG-T--AAGTGAAAA-CTAT----GT-A------ATG-------G---T-CAA-ATCAAACCGG-T-----TTT-AAca
gi|4 : ATTTT--GATCATTGCTTGTAC-AACTTTTC--CTTATATTCGTAAAA-GGAAA-----AATGATCGTTTAT-CTACTTCTCAGC-CACGAGTCAGTGATTCAG-GTG-GA-A-C------------------------T----AG-CTCCATGGGTC--TATTTTATAA-AG-CAC-CCATA-GTGT---AT-------A-------ACACATGTTCAAAGT----TGTGTTAATTTTTACG--AA-AATAATTGCACGGTGCTCTCA--G-G-AATTTTCT--GGGGGGAAAAAGCACACCCCATGTTTATTTCTCA-AAA-AGAAAGAGT----T---AT-----TAGAT--A-T-TGGAATGAATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATG-CAGCGTACTTTTAAATATGAATA----AACCCAAACCTG---TCTGTTGT----A-A--TACAGAACAC-T-GT------TCTAG---------------------CTATACATGT--AATTAA-TTCAACTGAACAGTTTTATAAACGGCGATCTAGAT
gi|4 : TAATTAATTCAACTG-AACAGTTTTATAAACGGCGATCTAGATAAACAGCCTTTCGGAATTCACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTTCAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTCATTTTGGGT--TGGTGGTTTTTTTTTTT--ACTGAGTATTCAACTA---------TAA---CTCC---------ACTAAACTATCCGAATAAAAAACTGACATCTCTaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|5 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgTCAACGAGTAT---GGTACT-CGACTATCGCTC----GG-AGTAC---------TTGA-TTA------AA---AA----ATA--------AC--------------AA--A-C---CT--T-TTTTC-AGTAAAGT---CT--AT---AAA-TTC------T-A------A---TCAA--TTCAGTATTT-TTG-T--GAGT-AAAA-TCAT----GA-A------A-A-------GG--TA-AA-GTCAATCC-GGT-----TTT-AATTC-GTTC----------------------T-----TCATT--TGC-GTGTGGATGTT-GG-TCAG--TAA---A-CATGCCGC-CGA---AAT--CCACTG---TTTGGA--CATA------CTTTAAAAGATCTTACG----ATGGAAACCTGGTGAAATG--------------------ATA-TGAA---AT-TGAA-CTG-----C----CATTCCGT-GGAATGACAA-CAA------ACACATA-------TATT----AAAGGCCGATA-------TT-CGTCAGAAT-CACAATTGAATTCCCTCGT---CAAAGTCTTCATGCTGG-TGAGTTTGCCACAAA-----AA------------CACCAAATAA----CA--------GA---TACCGAAAA--TAAAA------ATGGG-----C-TGGGT--A-GTTGCTG-ACAAAACTT-A-GAAATAGGCTGTCGACCAA-ATTAGCTTT-TT--AGCAAA-T--AGTAAT----C--AT------GA-AATCGT--ACA----TA-GGA-ATA-CAATG--GATGGA-CCTTATGTTT----GTTTC---------------TT-TT-------------TATGCC-GTAGCG-GAGTTT--GAATGTAGCTCGT----ACATTTC--ATTAT-----CAAAA-GA-AA-----ATTGACCGTTTAaat
gi|6 : atgaataTGAAATG----TATCATGCATATATCTATAATGAAT-TATTGCAACTTGA----TATG-CATTCTGTTGAAGGAACAATCAACCACGTACACGTAGT--CTATATTCGTCAGAATCTTATAATTTTCTCT-CGTCA-AATGTGT-------------TGG---TGAATTCG-----C-CA-C------------AA-----AAACACAGCCACAATA------AAACCCCA--------GA---T-CCAGAAG--AAAAC------ATATTGG---C-TGGAT--AGTTTGAAA-AAAAAACTTTACGAAATAGGCTGTCGACCAACAATAGTTTT-TTGCAGCAAAAT--AGCAATA------AT------GA-AATCGT--ACA----TT-GAACATA-C-TTGTTGAAGGATCTATATTAAT----ATGCTTTGTTTGTTTTC---TT-TT-------------TTTGCTTGTGGTG-CATTTTTGGAT-GTTACTTTTTTTGACATTTTCAATTG-------GAGG-G--AA-----ATTGACTTTTTATTCTACTT---AGTTCACGAGTCAGTGATTCAGAGTGAAA-A-TAGGCTCCAG------A--------T----AA-TT---TGAGTC--T-TATTGTAATAGCCAC-TATTT-GTATAAAAC-------A-------CC-----TTCAAAGT----TGTG-TGATTTACTTGAAAA-AA---TCGCAC-GTACACTCC--A---AATT-----AGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AAT
gi|7 : CGAGTACT-CGACTATCGCTC----GGTCG----------CAT--A-CTA------AA---TTTTTCATACTC-GAGTACTCG-TTA------AAA--ATG---GC--C-TTTTC-AGTAAATT---TT--AT---AAA-TTCTAA--AC-AT-----G---TCAGT-GTT------T-TTG-T--AAAT-AAAA-CCAT----GTCA------A-G-------G---TACAAAGTAAAACC-ACT-----TTT-AACTC-GTTTATGTTCAAA-------------TG--CATCATT--TGA-GTTTGGATTTT-GG-TCAG--TAATCCGATGC--CTT-CGA---AAT--CCACTGCC-T--GGT--CAT---------------GATCTCGTG----ATGGAAATCCGGTGAAATGAACGTA-----CATC-----ATT-TGAAA--AT-GAAA-TCGAAC--CAG--CATTCTTT-AGAGG-ACAA-CAA------ACATACAGT--GTATATT----AAAGGCCGATG-------TT-CGTTAGAAT-CGC-------------CAT---TAGATTCT-----CTCGTT------------AA-----GACCTTCAATT---CA------AA----CATTTTTGGTGAGTTCACCACAAA--AAGGCCAGATAAAAATATCTAC-TAGAT--A-TTTGCTGTTCAAAGCTT-A-AAAATTAGCTATCGACCAA-ATTAGATTT-TA--AACAAA-T--CGTTATA------AT------GA-AATCGT--ACA----TT-GAACATA-CATTG--GAGAGA-CTTT----AT----AT------------------TTGTT-------------TAGGCC-GCAGAG-CAATTT--GA
gi|8 : gatgtcaaCGAGTACC-CGACTATTGCTC----GGTCATAC-----------AA-CTG------AA---GTTTTCATAGTC-AAATATTCG-TCC------AAAC-AGT---GT--T-TTTCT-TGTAAAGT---TG--AT---AAA-T---------------------TAAGT-GTT------T-TTG-T--GAGT-AAAACTCGT----GT-A------A-A-------G---GTCAC-GTCAAATTTG-T-----TTA-AATCC-GTTCATGTTCATGATCAAATACATTGTA--AATCATT--TGA-GTTTGGATGTC----------TGA----------CTC-CAA---AATTCACAGTG---T--GG---CGTA------CTTTAAAAGATTTCATGTCGTATGAACAACCGGTGAAATG----TA-----TATG-----ATG-TGAAT-T-T-GAAC-TTG----------CATTATGT-GGAGGATCAA-CAA------ACTTGCA----TCATATT----AAAGGCTGATA-------TC-CGTCAGAAT-CAC-------------CGT---TAAAATCT-----CTCG-
gi|9 : gatgtcaaTTGC---ATAAA--TT---GAAACAGGTTGTTTTCCAA---TA-TTGT-CC--GCCAA-----CGTATT--------T------TA-AATAGT---------TTCGTACATA-CATTG--GAAACA-CCTTTTAAATTTATAT------------------GT-TTGCTTGTTTCATTGTATGCC--TAGAGACATTTT--GATTGTTGTTTGCTC-AACATTGC--ATGAT-----CAAAA-T--AAAAGTTATTGAA----TAT-TTACTTCTCTGT-TACAAATCGGTGATTCGG-TTG-AA-AGTA--T----GCCGCACG--------T----GA-TGAA-TGGATTAATAATTATTAT-AG-CGCGCCCTC-GCGT---ATAATGCA-A-------CC-----CTCAAAGT----GAATTTGAATGTCATGAAAcctttgtcttcaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC
Alignments
lowQualScore : 2222222222222 1 1111111 222222222222222 7777777777777777777777777777 33333333333333333 2222222 11111111 11111111111 1 222222 111111 11111111111 111111 5555555555 4444444444444444444 1111 1111111 22222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111111 1111111111111 11111 111111111 111111 888888888888888888888888888888888888888888 1111 22222 11 11111 77777777777777777777777777777777777777777 4444444444444444444444444444444 11111 111 222222 11111 333333 2222 1 777777777777777777 111 22 1111 77777777777777777777777777777777777777777 4444444444 22 44444444 11111 9999999999999999999 3333333333333 111 11 111111 11
lowQualScore : 0 0 2 5555 2 2 3 1 2 0000000000000 3 1111111 2 3 888888 000000000000000 1 555 555 4444 3 3 0000000000000000000000000000 33 33 444 5 2 5555 2 2 2 00000000000000000 1 0000000 2 2 2 00000000 44444444444 1 77 3 3 3 44 2 5 3 666 55 777777 888 222222 0 0 1 9999 1 99999999999 333333 4 4 4 4 3333333333 4 0 5 3333333333333333333 0000 4444444 4 4 0 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 0 1 4 5 3 666 66666666 9999999999999 1 22222 4 777777777 4 888 5 0 5 444444 66 1 4 2 777777777777777777777777777777777777777777 0000 5 0 5 66 6 4 3 4 00000 4 55 00000 2 4 1 4 4 0 4 99999999999999999999999999999999999999999 66 55 1 2 4 4 5555555555555555555555555555555 11111 9999 5 555 444444 88 88888 6 6 3 0 44 66 111111 1111 2 0 3 2 1 1 222222222222222222 444 3 11 8 3 7777 6 8 11 8 44 99999999999999999999999999999999999999999 6 1 1 0 6 1 3333333333 1 00 6 22222222 44444 6 0 33 6666666666666666666 1 1 3333333333333 1 222 3 11 3 0 0 0 3 22 222222 1 88 0
lowQualScore : . . . .... . . . . . ............. . ....... . . ...... ............... . ... ... .... . . ............................ .. .. ... . . .... . . . ................. . ....... . . . ........ ........... . .. . . . .. . . . ... .. ...... ... ...... . . . .... . ........... ...... . . . . .......... . . . ................... .... ....... . . . ..... ........................................................................................ .. . . . . . ... ........ ............. . ..... . ......... . ... . . . ...... .. . . . .......................................... .... . . . .. . . . . ..... . .. ..... . . . . . . . ......................................... .. .. . . . . ............................... ..... .... . ... ...... .. ..... . . . . .. .. ...... .... . . . . . . .................. ... . .. . . .... . . .. . .. ......................................... . . . . . . .......... . .. . ........ ..... . . .. ................... . . ............. . ... . .. . . . . . .. ...... . .. .
lowQualScore : 7 1 7 7777 6 7 3 5 7 2222222222222 3 6666666 1 1 888888 444444444444444 0 444 444 3333 1 1 1111111111111111111111111111 77 77 777 3 7 7777 7 7 7 22222222222222222 1 7777777 7 7 9 22222222 77777777777 4 33 1 1 1 22 8 6 6 444 55 000000 888 888888 8 7 1 4444 6 00000000000 777777 4 4 4 4 8888888888 4 2 0 0000000000000000000 6666 4444444 4 4 7 22222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 8 0 4 7 6 666 11111111 2222222222222 0 88888 4 888888888 4 888 0 2 0 444444 11 8 4 0 444444444444444444444444444444444444444444 6666 0 2 0 11 2 4 9 4 00000 0 00 00000 3 0 0 4 4 7 4 88888888888888888888888888888888888888888 11 77 7 6 4 4 9999999999999999999999999999999 11111 4444 7 777 999999 00 33333 7 7 2 8 22 22 555555 2222 5 0 2 5 0 0 000000000000000000 000 2 00 0 2 8888 4 0 44 0 00 22222222222222222222222222222222222222222 7 4 0 7 7 0 7777777777 0 77 5 88888888 55555 5 8 22 2222222222222222222 0 0 2222222222222 0 444 2 00 2 8 8 8 2 44 666666 0 66 8
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-CTA------AA---ATTTT-ATANTC-GAGTACTCG-TTA------AAA--ATN---C---T--TTTTTCAGTAAA---GTTT---A-T--AA-A-TTC-----AC-G-C-----A---TCAG--GTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AA-TTC-GTTCATGTTCA------AATA-------A--ATCATT--TGAG-TTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAA--AAAAC------ANAAT-----C-TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC---------GTA-ATA---ATGAAATCGT-ACATT-GAACAT------ACATTG--GAAAGACCT-TATAAAT----A---------TGT---C-----------T-------TCTTTT----TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNCTTTTA------AATA----AACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATG-C-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTG------TCAGT--CGNT--CTCTCCTTTTT--ACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
Reference ( family-1442 ) : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-CTA------AA---ANTTT-ATANTC-GAGTACTCG-TTA------AAA--ATN---C---T--TTTTNCAGTAAA---GTTT---A-T--AA-A-TTC-----AC-A-C-----A---TCAG--GTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AA-TTC-GTTCATGTTCA------AATA-------A--ATCATT--TGAG-TTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGTAGTNT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGAAAA--AAAAC------ANAAT-----C-TNGATA-TTTGCTG-ACAAAACTT-A-GAAATAGGC--------TGTCGACCAA-A-TTA-------GTTNT-TT--AACAAA-TC---------GTA-ATA---ATGAAATCGT-ACATT-GAACAT------ACATTG--GAAAGACCT-TATAAAT----A---------TGT---C-----------T-------TTTTTT----TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNCTTTTA------AATG----AACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATG-C-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTG------TANGT--CGNT--CTCTCCTTTTT--ACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
gi|1 : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAACGAATCATCGAGCTA------GA---AATTT-ATACTCCGAGTACTCG-ATA------AAAC-ATT---C---A--CTTTCCAGTAAA---TTCT---A-A--AG-A-TAC-----ACCA-C-----A---TCAG--GTCAATTT--TT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--AG-AAATGAAACCTG-----TCTT-AA-TTC-GTTCATGTCCA------TATA-------A--ATCAAT---GAG-AC-GGATGTTCGG-CCAG--TAAAAC-AT--CTCTGATGAGAGAGAC--TG---T--GGAGGCATA------CATTAAACGATCTCATG----TTGGAAAACCAATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGA----C----CAATCTGT-GAAGGGACAA-CAC------ACACATAATATTTATATC----AAGTGCCAATA-------TT-CGTCAGATT-CAGCAT---CAAATTCTCTCA-----AA-----AA------------CGAA----CA--------GA------TTCCGAAAC--AAAAC------ACAAT-----CCTTGACT-TTTACTG-ACAAAACTT-A-GAAATGGGC--------TGTCAACCAA---TTA-------GTTGT-TT--AATAAA-AT---------ATA-ATATTAATGAAATCGT-ACATT-GAACAT------ACATTT--GAAAGCCTT-TATAAAT----A---------T----------------------------TTT----TATGC-TGTGGTG-AATTTT--GATTGCTGC-CGGTACAACA-TTTCATCAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCCG-TCACAAGGCAATGATTCAG-GCG-AACA-TA--C----G------G--------T----AA-TTG--TGGATC--TAATTTTTAA-AG-CAC-CCCTC-GTGT---AT-------A-------CC-----GTTGGAAT----TGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACACTCA--A-G-AAACTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAAT--ATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTGA-GGTACTTTTCATGCTAGCCCACT-------------------ACCAAGGCCTG---TCTGTCATGATTA-AAATAT---GCTTAT-GTAATT-ATCTAAACCAGAGACCTATATACAACATTATATATGT--CCTTGA-TTCAATTTAACAAATTTCTAAAAGGCTATCCAGAT
gi|1 : TAATTGAATTAGATTGCAGAAGTA----GA----GCTC-AGATAAACAACCTTTC--------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATG-CACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTG------TATGT--CGCT--CTCCCCTTTCT--ACCGAGTATTCGACTATCGCCCGGCTAAAGCCTCCGAATACTCGACTTAGCTATCTGAGT-ACAAATT-ACATCCCTtgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgataattgaattagattgcagaagtagagctcagataaacaacctttcaccagttaacttcgctattcgtatgcgccgaggtacatgcacatgtaatgtatgactaatgactgtgaaacacttgtacactgtatgtcgctctcccctttctaccgagtattcgactatcgcccggctaaagcctccgaatactcgacttagctatctgagtacaaattacatccct
gi|10 : gtcaacgagtattcgaatactcgactatcgctcggtcgtaacgaatcatcgagctagaaatttatactccgagtactcgataaaacattcactttccagtaaattctaaagatacaccacatcaggtcaatttttgagtaaaatcatgtaaagtagaaatgaaacctgtcttaattcgttcatgtccatataaatcaatgagacggatgttcggccagtaaaacatctctgatgagagagactgtggaggcatacattaaacgatctcatgttggaaaaccaatgaaatatacattatatgaattatgaaattgaccaatctgtgaagggacaacacacacataatatttatatcaagtgccaatattcgtcagattcagcatcaaattctctcaaaaacgaacagattccgaaacaaaacacaatccttgacttttactgacaaaacttagaaatgggctgtcaaccaattagttgtttaataaaatataatattaatgaaatcgtacattgaacatacatttgaaagcctttataaatatttttatgctgtggtgaattttgattgctgccggtacaacatttcatcatcaaaagaaattgaccgtttatctacttctccgtcacaaggcaatgattcaggcgaacatacggtaattgtggatctaatttttaaagcacccctcgtgtataccgttggaattgtggtaattttcatgaaaagaatagttgcacggcacactcaagaaacttctcagaaaaagaaaaacgtgtcccatgtttagttcacatgaacagaaacaatgaaataagatgtaaataaatatattggaatgcatttctgcacgtcttgtgttggatattgaggtacttttcatgctagcccactaccaaggcctgtctgtcatgattaaaatatgcttatgtaattatctaaaccagagacctatatacaacattatatatgtccttgattcaatttaacaaatttctaaaaggctatccagattgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgaGGCCGATA-------TT-CGTCAGAAT-CACC-------AATTCTCTCG-T---CA-----AA------------TCTT----CA--------AA------TA---AAAA--AAAA-------AAAAT-----T-TGG
gi|10 : ---AA-----AA------------T-AA----CA--------GA------TACTGCAAT--AAAAT------ATCGG-----T-TGGATA-GTTGCTG-ACAAAACTT-tgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|10 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccTTG--GAAAGACCT-TATAAAT----G---------TGT---C-----------TGCTTGATTCTTTT----CATGC-CATAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCCTTATATTCATAAAA-GGAAAA-----ATGATTGTGTA-TCTACTTTTCAG-TCACGAGTCAGTGATTCAG-GTG-GA-gatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|11 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttGGGTACT-CGACTATCGCTC----GGTCGCATCGA-TCATCGA-CTA------AA---TTTTTCATAGTG-GAGTACTTG-TTA------AAA--ATA---AAAGT--ATTTCCAGTAAA---GTTT---A-T--AA-T-TCT-----AA-A-C-----A---CTTGCTGTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------AGGTT--A--AAGTTAGACC-G-----GCTTGAA-TGC-ATTCATGTTCA------AATA-------A--ATGATT--CAAG-TTTGGATGTT-GG-TCAG--T-AAAC-GTGCCTCTAA---AATCCAC--TGTT-T--AGG--CATA------CTTTA-----------------------------GAAATG----T-------ATT-----ACA-TGTGTCTAT-AAAA-TTAAG---CTAG-CATTCTGT-GGA
gi|12 : atgtcaatGCGCACTCC--AAG-AATTTTT----AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGATAAA---------------GAATACATTTCT----GTCTTATACTA---ATTGAATATACCTT-CATGCTATCTTTCTTTT---------TA----AACCCAAGCCTG---TCTGTTGTG-TCATAGCTAT---ACATGT-GTAATT-A---ATGCC-----------------ACTGC-----T--AGT---------CTGTACATATTTGTAAACGGTTATCCTGAT
gi|12 : ataTAAACGGTTATCCTGA-TTTCACCAGTGA-------------TGCGCGCTGAAGTAT-------------------GATTGATGACTTTGAAACACTAGTACACTG------TCAGT--ttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|13 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgAGTACT-CGACTATCGCCC----GGTCGTATCGA-TCATCGA-CTA------AATTTATTTT-ATAGTC-GAGTACTCG-TTACATGTAAAA--ATAGTCC---T--TTTTTCAGTAAA---GTCA---A-T--AC-A-TTCTAA--AC-A-CTTTGAA---GTGG--GTT--TTTTGGT---GAGT-AAAA-TCAT----GT-A-A-A-------G--------------------G-----TTTT-AA-TCC-GTTCATGTTCA------TATA-------A--ATCATT--TGAG-TTTGGATGTT-AG-TCAG--T-AAAC-ATGCCTCAAA---AATCCAC--TGTTTT--GGA--CATACATGTCCTTTAAAAGATATCTTG----ATGGAAAtccc
gi|14 : tcaactGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTACCGA-TCATTGA-CTA------AA---TTTTT-ATAGTC-CAGTATTCA-TTA------AAA--ATA---CCC-T--TTTTACAGTAAA---GTTT---A-T--AA-A-TTTT----AA-A-C-----AAT-TCAGT-GTT--TAT--AT---GAGT-AAAA-CCAT----GT-A-A-A-------GG--C--A--AAGTCAAAAC-G-----TTTT-AA-TTC-ATTCATGCTCA------AATA-------A--ATTATT--TTAG-TTTGGATATT-AG-TCAG--T-AAAC-ATGCTTACAA---AATCCAC--AG---T--g
gi|15 : cagtgatAGTACT-CAACTATCGCTC----GGT-G-ACCGA-TCATTGA-CTT------AA---ATTTTTATAGCC-C--TATTCGATTA------AAACTACC---C---T--TTTTACAGTAAA---GTTTTGAG-TTGAA-A-TTTTTGAAAC---C-----AATTTCA-----T--TTT--GTTACGAGTTAACA-TTATATGTGT-A-A-ACAGG---A---C--A--AAGTCAAAAC-G-----TTTT-AAATTC-ATTCATGCTCT------AATA-------ATAATTATT--TTAGGTTTGGATATT-AG-TCAGTATAAAAC-ATGCTTACAA---AATCCAtccag
gi|16 : GTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-CTATTCAGCAA---AGTTT-ATATTT-----------TTA------AAC--ATT---T---CAGTTTGTGAGTAAATTAATTT---C-T--AA-A----------C-A-C-----T---TCAG--TTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-AG------G---T--G--AAGTCAAACC-GC----TTTT-AA-TTC-TTTGATG-TCA------AATA-------A--AT--TTACTGTG-TTTGGATTGT-GG-TCGG--T-TAAC-ATGCCTCTGA---ATGCCAC--TGTTTT--GGA--CATA------CTTTAGAA
gi|17 : TCTAGTACT-CGACTATCGCTC----ATTCGTACCGA-TCATCGA-CTA------A------TTT-TT--------TTCTAG-TTA------GGA--ACT---C---T--TTTTGCAGTAAA---GTTT---A-T--GA-ATTTT-----AA-G-C-----A---TTTGA-ATG--GTT--AT---GTGT-AAAA-CCAC----GT-ATA-G-------G---T--A--ACGTCAAA--------------A------GTTCATGTTC-------------------------TT--TGAG-TTTGGGTGTT-CG-TCAA--T-AAGC-ATGCCTTCGA---AAACCAA--TA---T--GGA--CATA------CTTTAAAATATCTTTTG----ATatatatt
gi|18 : tca----AACCCAAGTGTGCCATCTGTT----TCA-AGCTA----ACACGTGGTACTT-ATATTCACTGA---------------GTTA-A-ATCT--AAACAG-CTAAATTGAA
gi|18 : TTGAAATACTTCTTCTCTG------C---C--CAGT--ATCTCCCTTCTTAACCGA-TACTAGACTATAGATCGACTAAAGCCTCAGAAAACTCGG-TAAGCTATCCGAGT-AAAAGCTGAC-TCCCTacttcgctttcttatggtgcttgaaatacttcttctctgcccagtatctcccttcttaaccgatactagactatagatcgactaaagcctcagaaaactcggtaagctatccgagtaaaagctgactcccta
gi|19 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcTACTCGAATATTGTGAATATCGCTC----GGTTATACTGA-T-----A-CT----------------C-ATATTT-GCTTACT-G-TTA------CAA--TTA---T---T--TTTTTTAG-------GTTT---AAT--AATA-TTT------T-G-T-----A---GTAC--ATT--CTT--GT---A--T-AAA-----T----GA-A-G-G-------G---TTCA--AAGTCAA-CA-G-----TTTT-AA-TTCTGTTCATGTTCT------AAAA-------G--ATCATT--CGCA-TTTGGGTTTT-GGCTCGT--TAAAa
gi|2 : atATCTCATG----ATGGAAAATCGGTCGAATA----TA-----CATT-----ACA-TGAAT-TAT-GAAA-TTAA----G----CATTCTGT-GGAGGGACAA-CAA------CCA-----TGT--ATATT----AAAGGCCAATA-------TT-CGTCAGAAT-CACCATATTTAAATTCTCTCA-TCTAAATCTTCAATT----------CGAAATAACA--------GA------TACAGAAAA--AAAA----------------------ATA-TCCGCTG-G--AAACTT-A-GAAATAGGT--------TGAAAACCAA-A-TTA-------GTTTT-TG--AACAAA-TT---------GCA-ATA---ATGAAATCGT-ACATT-GAACAT------ACATTG--GAAAGACCT-TATAAAT----A---------TGT---TTGCTTGACAAGT-------TTCTTT----TTTGC-CATAGTG-CATTTT--GAGTGTTGC-TTGTACTACG-TTTCATTAT-----CAAAG-G--AAA-----TTGACTGTTTA-TCTACTACTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-T---T----G------GCTTCTGAAT----AATTT---TGTGTC--TATTGTGTTC-AG-CAC-CCATC-ATGT---ATCAC----A-------CC-----TTCAAAGA----TGTGTTGA--TTCATGAAAA-A----TGGCACGGCGCACTCC--ATG-AATTTTCTCAGAAAAAAAA-----TGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGA-A-TGGAATGCATTTCT----GTCTCACATTGGATATTGA-TGTATTTTTCATGCCAGCGTTCTTGAA------AATGAATTAACCCAAGCCTG---TCTGTTGTGTTCA-AGCTAT---ACGCAT-GTAATTGATTTA-ACCGG---------------A----ACA-----AATTAAGTT---CTAAACAGtcttcgtct
gi|2 : TAATTGATTTAACCGGAACAAATT----AA----GTTC----TAAACAG-CTATCGG---------AG-----TTCCCTATGTGCGCGCGCTGAGGTATAT-------------------TTGATGACTTTGAAACACTCATACCCTG------TCAGTCCCCCC--CCCCCCTTTTA--ACAGCACACTCGACTATCGCTCAATT-AAGCCACCAAGTACTCAACTAAGCTATCCGAGT--AAAATTGACATCCCTctatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|20 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgCTATACATGTGTAATAAAATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATa
gi|20 : tgttctagCTTTGAGATACTTTTACCATG------TCAGTT-CGTT--TTTT--TTTTT--ACCGAGTACTCAACTATCGCTTGACTAAAGTCTCCGAGTA--------------CCGAGT--AAAATTGACACCCTTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|21 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgC-TGGTGCAATG-TTTCAATAC-----CAAAGTA--AAA-----TTG-CCGTTTA-TCT---TCTCTG-TCACGAGTTAGTTATTCAG-TTG-GA-A-CT--C----G------G--------TCCCCAA-------GGAT--------------AG-AAC---------GC---AC-------A-------CC-----TTCAAAGTAAGGTGGATTAATTTCCTTGGAAA-AAT-GTT---CGGCGCA-TCCTTT-T-AATTTTCTTAGAAAAACAA---CATGCTCTATGTTTAaag
gi|22 : TACTCGAATATT--GAATATCGCTC----GGTTATACTGA-T-----A-C----------------TC-ATATTT-GATTACTTG-TTA------ACA--ATT---T---T--TTTTTT--T--A---GTTT---A-A--TA-A-T------------------A---TTA----TT--TTT--------AGT--ACA-TTGT----AT-A-A-ACTTAAGGG---T--A--AAGTCAAACCAG-----TTTT-AA-TTC-GTTCAc
gi|23 : -----CATA-----ATA-TGAAT-TAT-AAAA-TTTG----CATAGCATTCTA--AGATGGAC---CAA------A-----AATGT--ATATT----AAAGACCGATA-------TTCCGTTAGAAT-CATT-TAA-TAAATTATCTCGTT---AA-----AA------------
gi|24 : ATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTTATTCTCCG-TCATAAATCAAT------G-GCT-AA-T-TA--T--------------------C----AA-TT---T-GATC--TATTGTGTAA-AC-CAC-----------------------A-------CC-----TTCGAAGT----TGTGTTAATTTTTATGAatgtgaattcaaata
gi|25 : -C-----A---CTAT--GCT--TTT--GT---GAGT-AAAA-TCAT----AT-A-A-AG------G---T--A--TAAT-AAAAC-GTATTTTTTT-AA-GTC-GTTCATGTTCA------AATT-------A--ATTATGA-TGAG-CATAGATATT-GG-TCGG--TGA
gi|26 : AA----GA--------GA------TACCGGGAA--AAA------------T-----T-TCGA-A-TG-GCTG-ACAAAACTA-A-GAAACAGAC--------TGACGACCAA-A-TAA-------GTTTCAGG--AACAAA-TC---------GTA-
gi|27 : ccacaaataccccaaatAGGC--------TGTCAACCAA---TTA-------GTTAT-CT--AATAGG-TC---------GTA-ATA---ATGAAATCGT-ACCTT-GAACAT------ACGTTG--GAAAG--CC-TATATAT----A---------T
gi|28 : ---TGGATC--TGTTGTATAA-AG-CAC-C-ATCAGTGT---AT-------AACGCATTCC-----TCCGAAGT----TGTGTTACTTTTCATTAAAA-
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-TTATTCAGCAA---AGTTT-ATAATT-G-GTAC
gi|3 : ctTACCCGAATACT-CGACTATCGTTC----GGTTGTACCGA-TCATCCA-CTA------AA---ATTTTTATACTC-GAGTACTCG-TTA------AAA--ATA---G---C--CATTTCAGTAAA---TTTT---A-A--AG-A-T----------G-C-----A---TCGGT-GCT--ATT--TT---GAGT-AAAA-TCAT----GG-A-A-A-------GG--T--A--AAGTCAAACAAG-----TTTT-AA-TTC-ATTTATGTTCA------TATG-------C--ATCATT--TGAA-TTTGGGTGTT-GA-TCAG--TAAA-C-ATGCCTCTGA---AATACAC--TG---TATGTG--CATA-------TTTAAAGAATTTCATG----GTACAGAATCGATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGAACAAT----CATTTTGT-GAAGGGACAA-CAA------AAAC---------ATATT----AAATGCCAATA-------TT-CGTCGGAAT-CGTCAT---CAAGTTCTCTCA-A---AA-----AA------------TGAA----CA--------GA------TGTCTAAAATCAAATT------AG--------C-TTGATA-TTTACTG-ACAAAACTT-A-GAAGCAGGC--------CGTCAACGAA-G-T-A-------GTTAT-TT--AATAAA-TC---------GTA-ATA---ATGAAGTCGT-ACTTT-GAACAT------ACATTG--TAACGCCTT-TACAAAT----A---------C---------------------------TTTT----TATGC-CGTAGTG-AATTTT--GATTGTTGC-CTGCACAGTA-TTTCATTAT-----CAAAC-G--AAA-----TTGACAGTTTA-TATATTTCACAG-TCACACGTCAACGATTCAG-GCG-AA-C-CT--T----G------GA-------T----AA-TTA--TGGATC--TA-TTTCTAA-AG-CAC-ACCTC-TTGT---ATAACCAACA-------CC-----TTCGAAGT----TGTGTAAATGTTCATAAAAT-CAAAGTTGCATGGCGCACTTC--A-ATAATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATGAAAATAAAT--cg
gi|30 : ttagggatgtcacccacACT-CGGCTATCGCTCCCGAGGTCGTACCGA-TCATCGA-CTA------AA---TATTT-
gi|31 : gtctaggg---TCAG--TGT--TTT--GT---AAGTGAAAA-CTAT----GT-A-ATG-------G---T--C--AAATCAAACCGG-----TTTT-AA-ca
gi|4 : ATTTT--GATCATTGC-TTGTACAACT-TTTCCTTATATTCGTAAAA-GGAAAA-----ATGATCGTTTA-TCTACTTCTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-C------------------------T----AG-CTCCATGGGTC--TATTTTATAA-AG-CAC-CCATA-GTGT---AT-------A-------ACACATGTTCAAAGT----TGTGTTAATTTTTACG--AA-AATAATTGCACGGTGCTCTCA--G-G-AATTTTCT--GGGGGGAAAAAGCACACCCCATGTTTATTTCTCA-AAA-AGAAAGAGT----T---AT-----TAGAT--A-T-TGGAATGAATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATG-CAGCGTACTTTTAAATATGAATA----AACCCAAACCTG---TCTGTTGT----A-A--TACAGAACAC-T-GT------TCTAG---------------------CTATACATGT--AATTAA-TTCAACTGAACAGTTTTATAAACGGCGATCTAGAT
gi|4 : TAATTAATTCAACTG-AACAGTTTTATAAACGGCGATCTAGATAAACAGCCTTTCGGAATT-CACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTT-CAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTCATTTTGGGT--TGGTGGTTTTTTTTTTT--ACTGAGTATTCAACTA---------TAA---CTCC---------ACTAAACTATCCGAATAAAAAACTGACATCTCTaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|5 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgTCAACGAGTAT---GGTACT-CGACTATCGCTC----GG-AGTAC-------TTGA-TTA------AA---AA----ATA--------AC--------------AA--A-C---C---T--TTTTTCAGTAAA---GTCT---A-T--AA-A-TTC-----TA-ATC-----AAT-TCAGT-ATT--TTT--GT---GAGT-AAAA-TCAT----GA-A-A-A-------GG--T--A--AAGTCAATCC-GG----TTTT-AA-TTC-GTTC---------------T------------TCATT--TGCG-TGTGGATGTT-GG-TCAG--TAAA-C-ATGCCGCCGA---AATCCAC--TG---TTTGGA--CATA------CTTTAAAAGATCTTACG----ATGGAAACCTGGTGAAATG--------------------ATA-TGAA---AT-TGAA-CTG-----C----CATTCCGT-GGAATGACAA-CAA------ACAC-----AT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CACAAT---TGAATTCCCTCG-T---CA-----AAGTCTT-------CATG----CT--------GGTGAGTTTGCCACAAA--AACAC------CAAATAA---C--AGATA-----CCG-A-AAA---T-A-AAAATGGGCTGGGTAGTTGCTGACAAA-ACTTAGAAATAGGCTGT-CG--ACCAAA-TTAGCTTTTTAGCAAATA---GT--AATCATGAAATC-GTACATAGGAATACAATG--GATGGACCT-TAT--GT----T---------TGT---------------T-------TCTTTT----TATGC-CGTAGCG-GAGTTT--GAATGTAGC-TCGT---ACA-TTTCATTAT-----CAAAA-GA-AAA-----TTGACCGTTTA-aat
gi|6 : atgaataTGAAATG----TATCATGCATATATCTATAATGAAT-TATTGCAACTTGA----TATG-CATTCTGTTGAAGGAACAATCAACCACGTACACGTAGTCT--ATATTCGTCAGAATCTTATAATTTTCTCT-CGTCA-AATGTGTTGG---TGAATTCGC-CA-C---AA-----AAACACAGCCACAATAAAACCCCA--------GA------T-CCAGAAG--AAAAC------ATATTGG---C-TGGATAGTTTGAAA-AAAAAACTTTACGAAATAGGC--------TGTCGACCAACA-ATA-------GTTTT-TTGCAGCAAAATA---------GCA-ATA---ATGAAATCGT-ACATT-GAACAT------AC-TTGTTGAAGGATCTATATTAAT----ATGCTTTGTTTGT---T-----------T-------TCTTTT----TTTGCTTGTGGTG-CATTTTTGGAT-GTTACTTTTTTTGACATTTTCAAT-T-----GGAGG-G--AAA-----TTGACTTTTTATTCTACTT---AGTTCACGAGTCAGTGATTCAGAGTGAAA-A-TAGGCTCCAG------A--------T----AA-TT---TGAGTC--T-TATTGTAATAGCCAC-TATTT-GTATAAAAC-------A-------CC-----TTCAAAGT----TGTG-TGATTTACTTGAAAA-AA---TCGCAC-GTACACTCC--A---AATT-----AGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AAT
gi|7 : CGAGTACT-CGACTATCGCTC----GGTCG--------CAT--A-CTA------AA---TTTTTCATACTC-GAGTACTCG-TTA------AAA--ATG---G---C--CTTTTCAGTAAA---TTTT---A-T--AA-A-TTCTAA--AC-A-T-----G---TCAGT-GTT--TTT--GT---AAAT-AAAA-CCAT----GTCA-A-G-------G---T--ACAAAGTAAAACC-AC----TTTT-AA-CTC-GTTTATGTTCA------AATG-------C--ATCATT--TGAG-TTTGGATTTT-GG-TCAG--TAATCCGATGCCTTCGA---AATCCAC--TGCC-T--GGT--CAT---------------GATCTCGTG----ATGGAAATCCGGTGAAATGAACGTA-----CATC-----ATT-TGAAA--AT-GAAA-TCGAAC--CAG--CATTCTTT-AGAGG-ACAA-CAA------ACATACAGTGT--ATATT----AAAGGCCGATG-------TT-CGTTAGAAT-CGCCAT---TAGATTCTCTCGTT---AA-----GACCTTCAATT---CAAA----CATTTTTGGTGAGTT---CACCACAAA--AAGGCCAGATAAAAATATCTAC-TAGATA-TTTGCTGTTCAAAGCTT-A-AAAATTAGC--------TATCGACCAA-A-TTA-------GATTT-TA--AACAAA-TC---------GTT-ATA---ATGAAATCGT-ACATT-GAACAT------ACATTG--GAGAGACTT-TATA-------------------------------------------TTTGTT----TAGGC-CGCAGAG-CAATTT--GA
gi|8 : gatgtcaaCGAGTACC-CGACTATTGCTC----GGTCATAC---------AA-CTG------AA---GTTTTCATAGTC-AAATATTCG-TCC------AAAC-AGT---G---T--TTTTCTTGTAAA---GTTG---A-T--AA-A-TT-----------------A-----AGT-GTT--TTT--GT---GAGT-AAAACTCGT----GT-A-A-A-------GG--T--C--ACGTCAAATTTG-----TTTA-AA-TCC-GTTCATGTTCATGATCAAATACATTGTAA--ATCATT--TGAG-TTTGGATGTC------------------TGACTCCAA---AATTCACAGTG---T--GG---CGTA------CTTTAAAAGATTTCATGTCGTATGAACAACCGGTGAAATG----TA-----TATG-----ATG-TGAAT-T-T-GAAC-TTG----------CATTATGT-GGAGGATCAA-CAA------ACTTGCA--TC--ATATT----AAAGGCTGATA-------TC-CGTCAGAAT-CACCGT---TAAAATCTCTCG-
gi|9 : gatgtcaaTTGC---ATAAA--TT---GAAACAGGT--------TGTTTTCCAA----TA--------TTGT-CC--GCCAA---C---------GTA-TT-----TTAAATAGT----TTCGTACAT------ACATTG--GAAACACCT-TTTAAATTTATA---------TGTTTGC-----------T-------TGTTTCATTGTATGC-C-TAGAGACATTTT--GATTGTTGT-TTGCTCAACA-TTGCATGAT-----CAAAA-T--AAAAGTTATTGAA----TA-TTTACTTCTCTG-TTACAAATCGGTGATTCGG-TTG-AA-AGTA--T----GCCGCACG--------T----GA-TGAA-TGGATTAATAATTATTAT-AG-CGCGCCCTC-GCGT---ATAATGCA-A-------CC-----CTCAAAGT----GAATTTGAATGTCATGAAAcctttgtcttcaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC
Alignments
lowQualScore : 11111111111111 1 1111 11111111111 666666666666666666666666666 33333333333333333 2222222 11111111 11111111111 1 222222 111111 11111111111 111111 5555555555 4444444444444444444 1111 1111111 22222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111111 1111111111111 11111 2222222222222222 88888888888888888888888888888888888888 111111 22222 11 11111 77777777777777777777777777777777777777777 4444444444444444444444444444444 11111 111 222222 11111 333333 2222 1 777777777777777777 111 22 1111 77777777777777777777777777777777777777777 4444444444 22 44444444 11111 999999999999999999 222222222222222222 111111 11
lowQualScore : 0 0 2 5555 2 2 3 1 2 88888888888888 3 3 0000 2 2 3 3 888888 3 77 77777777777 555 555 4444 3 3 999999999999999999999999999 33 33 444 5 2 5555 2 2 2 00000000000000000 1 0000000 2 2 2 00000000 44444444444 1 77 3 3 3 44 2 5 3 666 55 777777 888 222222 0 0 1 9999 1 99999999999 333333 4 4 4 4 3333333333 4 0 5 3333333333333333333 0000 4444444 4 4 0 00000 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 55 0 1 4 5 3 666 3 66666666 9999999999999 1 00000 4 9999999999999999 8888 0 5 66 1 4 2 00000000000000000000000000000000000000 444444 5 0 5 0 5 66 6 4 3 4 00000 4 55 00000 2 4 1 4 4 0 4 99999999999999999999999999999999999999999 0 66 55 1 2 4 4 5555555555555555555555555555555 11111 9999 5 555 444444 88 88888 6 6 3 0 44 66 111111 1111 2 0 3 2 1 1 222222222222222222 444 3 11 8 3 7777 6 8 11 8 44 99999999999999999999999999999999999999999 6 1 1 0 6 1 3333333333 1 00 6 22222222 44444 6 0 33 666666666666666666 1 1 777777777777777777 44 1 3 0 0 0 3 22 222222 1 88 0
lowQualScore : . . . .... . . . . . .............. . . .... . . . . ...... . .. ........... ... ... .... . . ........................... .. .. ... . . .... . . . ................. . ....... . . . ........ ........... . .. . . . .. . . . ... .. ...... ... ...... . . . .... . ........... ...... . . . . .......... . . . ................... .... ....... . . . ..... ........................................................................................ .. . . . . . ... . ........ ............. . ..... . ................ .... . . .. . . . ...................................... ...... . . . . . .. . . . . ..... . .. ..... . . . . . . . ......................................... . .. .. . . . . ............................... ..... .... . ... ...... .. ..... . . . . .. .. ...... .... . . . . . . .................. ... . .. . . .... . . .. . .. ......................................... . . . . . . .......... . .. . ........ ..... . . .. .................. . . .................. .. . . . . . . .. ...... . .. .
lowQualScore : 7 1 7 7777 6 7 3 5 7 33333333333333 3 0 9999 4 1 1 1 888888 1 33 44444444444 444 444 3333 1 1 666666666666666666666666666 77 77 777 3 7 7777 7 7 7 22222222222222222 1 7777777 7 7 9 22222222 77777777777 4 33 1 1 1 22 8 6 6 444 55 000000 888 888888 8 7 1 4444 6 00000000000 777777 4 4 4 4 8888888888 4 2 0 5555555555555555555 6666 4444444 4 4 7 22222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 8 0 4 7 6 666 1 11111111 2222222222222 0 22222 4 4444444444444444 9999 2 0 11 8 4 0 66666666666666666666666666666666666666 444444 0 4 0 2 0 11 2 4 9 4 00000 0 00 00000 3 0 0 4 4 7 4 88888888888888888888888888888888888888888 1 11 77 7 6 4 4 9999999999999999999999999999999 11111 4444 7 777 999999 00 33333 7 7 2 8 22 22 555555 2222 5 0 2 5 0 0 888888888888888888 000 2 00 0 2 8888 4 0 44 0 00 22222222222222222222222222222222222222222 7 4 0 7 7 0 7777777777 0 77 5 88888888 55555 5 8 22 222222222222222222 0 0 222222222222222222 66 4 2 8 8 8 2 44 666666 0 66 8
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-CTA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAA---AGTTT---A-T--AA-A-TTCT----AC-GC-----A---TCAG--GTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AA-TTC-GTTCATGTTCA------AATA-------A--ATCATT--TGAG-TTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C-TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNCTTT----TG------AATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
Reference ( family-1442 ) : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-CTA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAA---AGTTT---A-T--AA-A-TTC-----AC-GC-----A---TCAG--GTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AA-TTC-GTTCATGTTCA------AATA-------A--ATCATT--TGAG-TTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------ANA--AT-----C-TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------CT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNCTTT----TA------AATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCTCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
gi|1 : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAACGAATCATCGAGCTA------GA---AATTT-ATACTCCGAGTACTCG-AT-A------AA-AC-ATT---C---A--CTTTCCAGTAA---ATTCT---A-A--AG-A-TAC-----ACCAC-----A---TCAG--GTCAATTT--TT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--AG-AAATGAAACCTG-----TCTT-AA-TTC-GTTCATGTCCA------TATA-------A--ATCAAT---GAG-AC-GGATGTTCGG-CCAG--TAAAAC-AT--CTCTGATGAGAGAGAC--TG---T--GGAGGCATA------CATTAAACGATCTCATG----TTGGAAAACCAATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGA----C----CAATCTGT-GAAGGGACAA-CAC------ACACATAATATTTATATC----AAGTGCCAATA-------TT-CGTCAGATT-CAGCAT---CAAATTCTCTCA-----AA-----AA------------CGAA----CA--------GA------TTCCGAAACAAAAC------ACA--AT-----CCTTGACT-TTTACTG-ACAAAACTT-A-GAAATGGGC--------TGTCAACCAA---TTA-------GTTGT-TT--AATAAA-AT----------------ATAATATTAATGAAATCGTACATT-GAACATACATTT--GAAAGCCTT-TATAAAT----A---------T--------------------------T------TT-TATGC-TGTGGTG-AATTTT--GATTGCTGC-CGGTACAACA-TTTCATCAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCCG-TCACAAGGCAATGATTCAG-GCG-AACA-TA--C----G------G--------T----AA-TTG--TGGATC--TAATTTTTAA-AG-CAC-CCCTC-GTGT---AT-------A-------CC-----GTTGGAAT----TGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACACTCA--A-G-AAACTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAAT--ATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTGA-GGTACTTTTCATGCTAGCCCACT-------------------ACCAAGGCCTG---TCTGTCATGATTA-AAATAT---GCTTAT-GTAATT-ATCTAAACCAGAGACCTATATACAACATTATATATGT--CCTTGA-TTCAATTTAACAAATTTCTAAAAGGCTATCCAGAT
gi|1 : TAATTGAATTAGATTGCAGAAGTA----GA----GCTC-AGATAAACAACCTTTC--------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATGCACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTGTA-T------GT--CGCT--CTCCCCTTTCTACCGAGTATTCGACTATCGCCCGGCTAAAGCCTCCGAATACTCGACTTAGCTATCTGAGT-ACAAATT-ACATCCCTtgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgataattgaattagattgcagaagtagagctcagataaacaacctttcaccagttaacttcgctattcgtatgcgccgaggtacatgcacatgtaatgtatgactaatgactgtgaaacacttgtacactgtatgtcgctctcccctttctaccgagtattcgactatcgcccggctaaagcctccgaatactcgacttagctatctgagtacaaattacatccct
gi|10 : gtcaacgagtattcgaatactcgactatcgctcggtcgtaacgaatcatcgagctagaaatttatactccgagtactcgataaaacattcactttccagtaaattctaaagatacaccacatcaggtcaatttttgagtaaaatcatgtaaagtagaaatgaaacctgtcttaattcgttcatgtccatataaatcaatgagacggatgttcggccagtaaaacatctctgatgagagagactgtggaggcatacattaaacgatctcatgttggaaaaccaatgaaatatacattatatgaattatgaaattgaccaatctgtgaagggacaacacacacataatatttatatcaagtgccaatattcgtcagattcagcatcaaattctctcaaaaacgaacagattccgaaacaaaacacaatccttgacttttactgacaaaacttagaaatgggctgtcaaccaattagttgtttaataaaatataatattaatgaaatcgtacattgaacatacatttgaaagcctttataaatatttttatgctgtggtgaattttgattgctgccggtacaacatttcatcatcaaaagaaattgaccgtttatctacttctccgtcacaaggcaatgattcaggcgaacatacggtaattgtggatctaatttttaaagcacccctcgtgtataccgttggaattgtggtaattttcatgaaaagaatagttgcacggcacactcaagaaacttctcagaaaaagaaaaacgtgtcccatgtttagttcacatgaacagaaacaatgaaataagatgtaaataaatatattggaatgcatttctgcacgtcttgtgttggatattgaggtacttttcatgctagcccactaccaaggcctgtctgtcatgattaaaatatgcttatgtaattatctaaaccagagacctatatacaacattatatatgtccttgattcaatttaacaaatttctaaaaggctatccagattgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgaGGCCGATA-------TT-CGTCAGAAT-CACC-------AATTCTCTCG-T---CA-----AA------------TCTT----CA--------AA------TA----AAAAAAAA------AAA--AT-----T-TGG
gi|10 : ---AA-----AA------------T-AA----CA--------GA------TACTGCAATAAAAT------ATC--GG-----T-TGGATA-GTTGCTG-ACAAAACTT-tgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|10 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccTTG--GAAAGACCT-TATAAAT----G---------TGT------------CTGCTTGATTCTT------TT-CATGC-CATAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCCTTATATTCATAAAA-GGAAAA-----ATGATTGTGTA-TCTACTTTTCAG-TCACGAGTCAGTGATTCAG-GTG-GA-gatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|11 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttGGGTACT-CGACTATCGCTC----GGTCGCATCGA-TCATCGA-CTA------AA---TTTTTCATAGTG-GAGTACTTG-TT-A------AA-A--ATA---AAAGT--ATTTCCAGTAA---AGTTT---A-T--AA-T-TCT-----AA-AC-----A---CTTGCTGTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------AGGTT--A--AAGTTAGACC-G-----GCTTGAA-TGC-ATTCATGTTCA------AATA-------A--ATGATT--CAAG-TTTGGATGTT-GG-TCAG--T-AAAC-GTGCCTCTAA---AATCCAC--TGTT-T--AGG--CATA------CTTTA-----------------------------GAAATG----T-------ATT-----ACA-TGTGTCTAT-AAAA-TTAAG---CTAG-CATTCTGT-GGA
gi|12 : atgtcaatGCGCACTCC--AAG-AATTTTT----AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGATAAA---------------GAATACATTTCT----GTCTTATACTA---ATTGAATATACCTT-CATGCTATCTTTCTTT----T---------TAAACCCAAGCCTG---TCTGTTGTG-TCATAGCTAT---ACATGT-GTAATT-A---ATGCC-----------------ACTGC-----T--AGT---------CTGTACATATTTGTAAACGGTTATCCTGAT
gi|12 : ataTAAACGGTTATCCTGA-TTTCACCAGTGA-------------TGCGCGCTGAAGTAT------------------GATTGATGACTTTGAAACACTAGTACACTGTC-A------GT--ttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|13 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgAGTACT-CGACTATCGCCC----GGTCGTATCGA-TCATCGA-CTA------AATTTATTTT-ATAGTC-GAGTACTCG-TT-ACATGTAAA-A--ATAGTCC---T--TTTTTCAGTAA---AGTCA---A-T--AC-A-TTCTAA--AC-ACTTTGAA---GTGG--GTT--TTTTGGT---GAGT-AAAA-TCAT----GT-A-A-A-------G--------------------G-----TTTT-AA-TCC-GTTCATGTTCA------TATA-------A--ATCATT--TGAG-TTTGGATGTT-AG-TCAG--T-AAAC-ATGCCTCAAA---AATCCAC--TGTTTT--GGA--CATACATGTCCTTTAAAAGATATCTTG----ATGGAAAtccc
gi|14 : tcaactGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTACCGA-TCATTGA-CTA------AA---TTTTT-ATAGTC-CAGTATTCA-TT-A------AA-A--ATA---CCC-T--TTTTACAGTAA---AGTTT---A-T--AA-A-TTTT----AA-AC-----AAT-TCAGT-GTT--TAT--AT---GAGT-AAAA-CCAT----GT-A-A-A-------GG--C--A--AAGTCAAAAC-G-----TTTT-AA-TTC-ATTCATGCTCA------AATA-------A--ATTATT--TTAG-TTTGGATATT-AG-TCAG--T-AAAC-ATGCTTACAA---AATCCAC--AG---T--g
gi|15 : cagtgatAGTACT-CAACTATCGCTC----GGT-G-ACCGA-TCATTGA-CTT------AA---ATTTTTATAGCC-C--TATTCGATT-A------AA-ACTACC---C---T--TTTTACAGTAA---AGTTTTGAG-TTGAA-A-TTTTTGAAAC--C-----AATTTCA-----T--TTT--GTTACGAGTTAACA-TTATATGTGT-A-A-ACAGG---A---C--A--AAGTCAAAAC-G-----TTTT-AAATTC-ATTCATGCTCT------AATA-------ATAATTATT--TTAGGTTTGGATATT-AG-TCAGTATAAAAC-ATGCTTACAA---AATCCAtccag
gi|16 : GTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-CTATTCAGCAA---AGTTT-ATATTT-----------TT-A------AA-C--ATT---T---CAGTTTGTGAGTAAATTAATTT---C-T--AA-----------AC-AC-----T---TCAG--TTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-AG------G---T--G--AAGTCAAACC-GC----TTTT-AA-TTC-TTTGATG-TCA------AATA-------A--AT--TTACTGTG-TTTGGATTGT-GG-TCGG--T-TAAC-ATGCCTCTGA---ATGCCAC--TGTTTT--GGA--CATA------CTTTAGAA
gi|17 : TCTAGTACT-CGACTATCGCTC----ATTCGTACCGA-TCATCGA-CT--------A---ATTTT-TT--TC----TA---G-TT-A------GG-A--ACT---C---T--TTTTGCAGTAA---AGTTT---A-T--GA-ATTTT-----AA-GC-----A---TTTGA-ATG--GTT--AT---GTGT-AAAA-CCAC----GT-ATA-G-------G---T--A--ACGTCAAA--------------A------GTTCATGTTC-------------------------TT--TGAG-TTTGGGTGTT-CG-TCAA--T-AAGC-ATGCCTTCGA---AAACCAA--TA---T--GGA--CATA------CTTTAAAATATCTTTTG----ATatatatt
gi|18 : tcaAACCCAAGTGTGCCATCTGTT----TCA-AGCTA----ACACGTGGTACTT-ATATTCACTGA---------------GTTA-A-ATCT--AAACAG-CTAAATTGAA
gi|18 : TTGAAATACTTCTTCTCTGCCCA------GT----AT--CTCCCTTCTTAACCGA-TACTAGACTATAGATCGACTAAAGCCTCAGAAAACTCGG-TAAGCTATCCGAGT-AAAAGCTGAC-TCCCTacttcgctttcttatggtgcttgaaatacttcttctctgcccagtatctcccttcttaaccgatactagactatagatcgactaaagcctcagaaaactcggtaagctatccgagtaaaagctgactcccta
gi|19 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcTACTCGAATATTGTGAATATCGCTC----GGTTATACTGA-T-----A-CT----------------C-ATATTT-GCTTACT-G-TT-A------CA-A--TTA---T---T--TTTTTTAG-------GTTT---AAT--AATA-TTT------T-GT-----A---GTAC--ATT--CTT--GT---A--T-AAA-----T----GA-A-G-G-------G---TTCA--AAGTCAA-CA-G-----TTTT-AA-TTCTGTTCATGTTCT------AAAA-------G--ATCATT--CGCA-TTTGGGTTTT-GGCTCGT--TAAAa
gi|2 : atATCTCATG----ATGGAAAATCGGTCGAATA----TA-----CATT-----ACA-TGAAT-TAT-GAAA-TTAA----G----CATTCTGT-GGAGGGACAA-CAA------CCA-----TGT--ATATT----AAAGGCCAATA-------TT-CGTCAGAAT-CACCATATTTAAATTCTCTCA-TCTAAATCTTCAATT----------CGAAATAACA--------GA------TACAGAAAAAAAA------------------------ATA-TCCGCTG-G--AAACTT-A-GAAATAGGT--------TGAAAACCAA-A-TTA-------GTTTT-TG--AACAAA-TT----------------GCAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGTTTGCTTGACAAGTT-------TCTT------TT-T-TGC-CATAGTG-CATTTT--GAGTGTTGC-TTGTACTACG-TTTCATTAT-----CAAAG-G--AAA-----TTGACTGTTTA-TCTACTACTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-T---T----G------GCTTCTGAAT----AATTT---TGTGTC--TATTGTGTTC-AG-CAC-CCATC-ATGT---ATCAC----A-------CC-----TTCAAAGA----TGTGTTGA--TTCATGAAAA-A----TGGCACGGCGCACTCC--ATG-AATTTTCTCAGAAAAAAAA-----TGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGA-A-TGGAATGCATTTCT----GTCTCACATTGGATATTGA-TGTATTTTTCATGCCAGCGTTCTTGAAAATG------AATTAACCCAAGCCTG---TCTGTTGTGTTCA-AGCTAT---ACGCAT-GTAATTGATTTA-ACCGG---------------A----ACA-----AATTAAGTT---CTAAACAGtcttcgtct
gi|2 : TAATTGATTTAACCGGAACAAATT----AA----GTTC----TAAACAG-CTATCGG---------AG-----TTCCCTATGTGCGCGCGCTGAGGTATAT------------------TTGATGACTTTGAAACACTCATACCCTGTC-A------GTCCCCCC--CCCCCCTTTTAACAGCACACTCGACTATCGCTCAATT-AAGCCACCAAGTACTCAACTAAGCTATCCGAGT--AAAATTGACATCCCTctatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|20 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgCTATACATGTGTAATAAAATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATa
gi|20 : tgttctagCTTTGAGATACTTTTACCATGTC-A------GTT-CGTT--TTTT--TTTTTACCGAGTACTCAACTATCGCTTGACTAAAGTCTCCGAGTA--------------CCGAGT--AAAATTGACACCCTTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|21 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgC-TGGTGCAATG-TTTCAATAC-----CAAAGTA--AAA-----TTG-CCGTTTA-TCT---TCTCTG-TCACGAGTTAGTTATTCAG-TTG-GA-A-CT--C----G------G--------TCCCCAA-------GGAT--------------AG-AAC---------GC---AC-------A-------CC-----TTCAAAGTAAGGTGGATTAATTTCCTTGGAAA-AAT-GTT---CGGCGCA-TCCTTT-T-AATTTTCTTAGAAAAACAA---CATGCTCTATGTTTAaag
gi|22 : TACTCGAATATT--GAATATCGCTC----GGTTATACTGA-T-----A-C----------------TC-ATATTT-GATTACTTG-TT-A------AC-A--ATT---T---T--TTTTTT--T-----AGTTT---A-A--TA-A-T-----------------A---TTA----TT--TTT--------AGT--ACA-TTGT----AT-A-A-ACTTAAGGG---T--A--AAGTCAAACCAG-----TTTT-AA-TTC-GTTCAc
gi|23 : -----CATA-----ATA-TGAAT-TAT-AAAA-TTTG----CATAGCATTCTA--AGATGGAC---CAA------A-----AATGT--ATATT----AAAGACCGATA-------TTCCGTTAGAAT-CATT-TAA-TAAATTATCTCGTT---AA-----AA------------
gi|24 : ATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTTATTCTCCG-TCATAAATCAATG-------GCT-AA-T-TA--T--------------------C----AA-TT---TG-ATC--TATTGTGTAA-AC-CAC-----------------------A-------CC-----TTCGAAGT----TGTGTTAATTTTTATGAatgtgaattcaaata
gi|25 : C-----A---CTAT--GCT--TTT--GT---GAGT-AAAA-TCAT----AT-A-A-AG------G---T--A--TAAT-AAAAC-GTATTTTTTT-AA-GTC-GTTCATGTTCA------AATT-------A--ATTATGA-TGAG-CATAGATATT-GG-TCGG--TGA
gi|26 : AA----GA--------GA------TACCGGGAAAAA--------------T-----T-TCGA-A-TG-GCTG-ACAAAACTA-A-GAAACAGAC--------TGACGACCAA-A-TAA-------GTTTCAGG--AACAAA-TC----------------GTA
gi|27 : ccacaaataccccaaatGGC--------TGTCAACCAA---TTA-------GTTAT-CT--AATAGG-TC----------------GTAATA---ATGAAATCGTACCTT-GAACATACGTTG--GAAAG--CC-TATATAT----A---------T
gi|28 : a---TGGATC--TGTTGTATAA-AG-CAC-C-ATCAGTGT---AT-------AACGCATTCC-----TCCGAAGT----TGTGTTACTTTTCATTAAAA-
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-TTATTCAGCAA---AGTTT-ATAATT-G-GTAC
gi|3 : ctTACCCGAATACT-CGACTATCGTTC----GGTTGTACCGA-TCATCCA-CTA------AA---ATTTTTATACTC-GAGTACTCG-TT-A------AA-A--ATA---G---C--CATTTCAGTAA---ATTTT---A-A--AG-A-T----------GC-----A---TCGGT-GCT--ATT--TT---GAGT-AAAA-TCAT----GG-A-A-A-------GG--T--A--AAGTCAAACAAG-----TTTT-AA-TTC-ATTTATGTTCA------TATG-------C--ATCATT--TGAA-TTTGGGTGTT-GA-TCAG--TAAA-C-ATGCCTCTGA---AATACAC--TG---TATGTG--CATA-------TTTAAAGAATTTCATG----GTACAGAATCGATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGAACAAT----CATTTTGT-GAAGGGACAA-CAA------AAAC---------ATATT----AAATGCCAATA-------TT-CGTCGGAAT-CGTCAT---CAAGTTCTCTCA-A---AA-----AA------------TGAA----CA--------GA------TGTCT---AAAATC------AAATTAG-----C-TTGATA-TTTACTG-ACAAAACTT-A-GAAGCAGGC--------CGTCAACGAA-G-T-A-------GTTAT-TT--AATAAA-TC----------------GTAATA---ATGAAGTCGTACTTT-GAACATACATTG--TAACGCCTT-TACAAAT----A----------------------------------CTT------TT-TATGC-CGTAGTG-AATTTT--GATTGTTGC-CTGCACAGTA-TTTCATTAT-----CAAAC-G--AAA-----TTGACAGTTTA-TATATTTCACAG-TCACACGTCAACGATTCAG-GCG-AA-C-CT--T----G------GA-------T----AA-TTA--TGGATC--TA-TTTCTAA-AG-CAC-ACCTC-TTGT---ATAACCAACA-------CC-----TTCGAAGT----TGTGTAAATGTTCATAAAAT-CAAAGTTGCATGGCGCACTTC--A-ATAATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATGAAAATAAAT--cg
gi|30 : ttagggatgtcacccacACT-CGGCTATCGCTCCCGAGGTCGTACCGA-TCATCGA-CTA------AAT--ATTTC-A
gi|31 : gtctaggg---TCAG--TGT--TTT--GT---AAGTGAAAA-CTAT----GT-A-ATG-------G---T--C--AAATCAAACCGG-----TTTT-AA-
gi|4 : ATTTT--GATCATTGC-TTGTACAACT-TTTCCTTATATTCGTAAAA-GGAAAA-----ATGATCGTTTA-TCTACTTCTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-C------------------------T----AG-CTCCATGGGTC--TATTTTATAA-AG-CAC-CCATA-GTGT---AT-------A-------ACACATGTTCAAAGT----TGTGTTAATTTTTACG--AA-AATAATTGCACGGTGCTCTCA--G-G-AATTTTCT--GGGGGGAAAAAGCACACCCCATGTTTATTTCTCA-AAA-AGAAAGAGT----T---AT-----TAGAT--A-T-TGGAATGAATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATG-CAGCGTACTTT----TAAATATGAATAAACCCAAACCTG---TCTGTTGT----A-A--TACAGAACAC-T-GT------TCTAG---------------------CTATACATGT--AATTAA-TTCAACTGAACAGTTTTATAAACGGCGATCTAGAT
gi|4 : TAATTAATTCAACTG-AACAGTTTTATAAACGGCGATCTAGATAAACAGCCTTTCGGAATT-CACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTTCAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTC-ATTTTGGGT--TGGTGGTTTTTTTTTTTACTGAGTATTCAACTA---------TAA---CTCC---------ACTAAACTATCCGAATAAAAAACTGACATCTCTaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|5 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgTCAACGAGTAT---GGTACT-CGACTATCGCTC----GG-AGTAC-------TTGA-TTA------AA---A-------------AATA--------A------CA-A--A-C---C---T--TTTTTCAGTAA---AGTCT---A-T--AA-A-TTCT----AA-TC-----AAT-TCAGT-ATT--TTT--GT---GAGT-AAAA-TCAT----GA-A-A-A-------GG--T--A--AAGTCAATCC-GG----TTTT-AA-TTC-GTTC---------------T------------TCATT--TGCG-TGTGGATGTT-GG-TCAG--TAAA-C-ATGCCGCCGA---AATCCAC--TG---TTTGGA--CATA------CTTTAAAAGATCTTACG----ATGGAAACCTGGTGAAATG--------------------ATA-TGAA---AT-TGAA-CTG-----C----CATTCCGT-GGAATGACAA-CAA------ACACA-----T--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CACAAT---TGAATTCCCTCG-T---CA-----AAGTCTT-------CATG----CT--------GGTGAGTTTGCCACAAAAACAC------CAA--ATAA---C--AGATA-----CCG-A-AAA---T-A-AAAATGGGCTGGGTAGTTGCTGACAAA-ACTTAGAAATAGGCTGT-CG--ACCAAA-TTAGCTTTTTAGCAAATAGTAATC---ATGAAATCGTACATA-GGA-ATACAATG--GATGGACCT-TAT--GT----T---------TGT-------------T-------TCTT------TT-TATGC-CGTAGCG-GAGTTT--GAATGTAGC-TCGT---ACA-TTTCATTAT-----CAAAA-GA-AAA-----TTGACCGTTTA-aat
gi|6 : atgaataTGAAATG----TATCATGCATATATCTATAATGAAT-TATTGCAACTTGA----TATG-CATTCTGTTGAAGGAACAATCAACCACGTACACGTAGTCT--ATATTCGTCAGAATCTTATAATTTTCTCT-CGTCA-AATGTGTTGG---TGAATTCGC-CA-C---AA-----AAACACAGCCACAATAAAACCCCA--------GA------T-CCAGAAGAAAAC------ATA--TTGG---C-TGGATAGTTTGAAA-AAAAAACTTTACGAAATAGGC--------TGTCGACCAACA-ATA-------GTTTT-TTGCAGCAAAATA----------------GCAATA---ATGAAATCGTACATT-GAACATAC-TTGTTGAAGGATCTATATTAAT----ATGCTTTGTTTGT------------TT-------TCTT------TT-TTTGCTTGTGGTG-CATTTTTGGAT-GTTACTTTTTTTGACATTTTCAAT-T-----GGAGG-G--AAA-----TTGACTTTTTATTCTACTT---AGTTCACGAGTCAGTGATTCAGAGTGAAA-A-TAGGCTCCAG------A--------T----AA-TT---TGAGTC--T-TATTGTAATAGCCAC-TATTT-GTATAAAAC-------A-------CC-----TTCAAAGT----TGTG-TGATTTACTTGAAAA-AA---TCGCAC-GTACACTCC--A---AATT-----AGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AAT
gi|7 : CGAGTACT-CGACTATCGCTC----GGTCG--------CAT--A-CTA------AA---TTTTTCATACTC-GAGTACTCG-TT-A------AA-A--ATG---G---C--CTTTTCAGTAA---ATTTT---A-T--AA-A-TTCTAA--AC-AT-----G---TCAGT-GTT--TTT--GT---AAAT-AAAA-CCAT----GTCA-A-G-------G---T--ACAAAGTAAAACC-AC----TTTT-AA-CTC-GTTTATGTTCA------AATG-------C--ATCATT--TGAG-TTTGGATTTT-GG-TCAG--TAATCCGATGCCTTCGA---AATCCAC--TGCC-T--GGT--CAT---------------GATCTCGTG----ATGGAAATCCGGTGAAATGAACGTA-----CATC-----ATT-TGAAA--AT-GAAA-TCGAAC--CAG--CATTCTTT-AGAGG-ACAA-CAA------ACATACAGTGT--ATATT----AAAGGCCGATG-------TT-CGTTAGAAT-CGCCAT---TAGATTCTCTCGTT---AA-----GACCTTCAATT---CAAA----CATTTTTGGTGAGTT---CACCACAAAAAGGCCAGATAAAA--ATATCTAC-TAGATA-TTTGCTGTTCAAAGCTT-A-AAAATTAGC--------TATCGACCAA-A-TTA-------GATTT-TA--AACAAA-TC----------------GTTATA---ATGAAATCGTACATT-GAACATACATTG--GAGAGACTT-TATA-----------------------------------------TTTG------TT-TAGGC-CGCAGAG-CAATTT--GA
gi|8 : gatgtcaaCGAGTACC-CGACTATTGCTC----GGTCATAC---------AA-CTG------AA---GTTTTCATAGTC-AAATATTCG-TCCA------AACA--GTG---T---T--TTTCTT-GTAA---AGTTG---A-T--AA-A-TTA-----A--GT---------------GTT--TTT--GT---GAGT-AAAACTCGT----GT-A-A-A-------GG--T--C--ACGTCAAATTTG-----TTTA-AA-TCC-GTTCATGTTCATGATCAAATACATTGTAA--ATCATT--TGAG-TTTGGATGTC------------------TGACTCCAA---AATTCACAGTG---T--GG---CGTA------CTTTAAAAGATTTCATGTCGTATGAACAACCGGTGAAATG----TA-----TATG-----ATG-TGAAT-T-T-GAAC-TTG----------CATTATGT-GGAGGATCAA-CAA------ACTTGCA-T-C--ATATT----AAAGGCTGATA-------TC-CGTCAGAAT-CACCGT---TAAAATCTCTCG-
gi|9 : gatgtcaaTTGC---ATAAA--TT---GAAACAGGT--------TGTTTTCCAA----TA--------TTGT-CC--GCCAA---C----------------GTATT-----TTAAATAGT---TTCGTACATACATTG--GAAACACCT-TTTAAATTTATA---------TGT------------TT-------GCTTGTTTCATTGTATGC-C-TAGAGACATTTT--GATTGTTGT-TTGCTCAACA-TTGCATGAT-----CAAAA-T--AAAAGTTATTGAA----TA-TTTACTTCTCTG-TTACAAATCGGTGATTCGG-TTG-AA-AGTA--T----GCCGCACG--------T----GA-TGAA-TGGATTAATAATTATTAT-AG-CGCGCCCTC-GCGT---ATAATGCA-A-------CC-----CTCAAAGT----GAATTTGAATGTCATGAAAcctttgtcttcaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111 1 1111 11111111111 555555555555555555555555555 33333333333333333 2222222 11111111 11111111111 1 222222 111111 11111111111 111111 5555555555 4444444444444444444 1111 1111111 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111111111 11111 2222222222222222 77777777777777777777777777777777777777 111111 22222 11 11111 77777777777777777777777777777777777777777 4444444444444444444444444444444 11111 111 222222 11111 333333 2222 1 66666666666666 111 22 1111 77777777777777777777777777777777777777777 4444444444 22 44444444 11111 999999999999999999 222222222222222222 111111 11
lowQualScore : 0 0 2 5555 2 2 3 1 2 88888888888888 3 3 0000 2 2 3 3 888888 3 77 77777777777 55555555 3 555555555555555555555555555 33 33 444 5 2 5555 2 2 2 00000000000000000 1 0000000 2 2 2 00000000 44444444444 1 77 3 3 3 44 2 5 3 666 55 777777 888 222222 0 0 1 9999 1 99999999999 333333 4 4 4 4 3333333333 4 0 5 3333333333333333333 0000 4444444 4 4 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55 0 1 4 5 3 666 3 66666666 9999999999999 1 00000 4 9999999999999999 8888 0 5 66 1 4 2 66666666666666666666666666666666666666 444444 5 0 5 0 5 66 6 4 3 4 00000 4 55 00000 2 4 1 4 4 0 4 99999999999999999999999999999999999999999 0 66 55 1 2 4 4 5555555555555555555555555555555 11111 9999 5 555 444444 88 88888 6 6 3 0 44 66 111111 1111 2 0 3 2 1 1 88888888888888 444 3 11 8 3 7777 6 8 11 8 44 99999999999999999999999999999999999999999 6 1 1 0 6 1 3333333333 1 00 6 22222222 44444 6 0 33 666666666666666666 1 1 777777777777777777 44 1 3 0 0 0 3 22 222222 1 88 0
lowQualScore : . . . .... . . . . . .............. . . .... . . . . ...... . .. ........... ........ . ........................... .. .. ... . . .... . . . ................. . ....... . . . ........ ........... . .. . . . .. . . . ... .. ...... ... ...... . . . .... . ........... ...... . . . . .......... . . . ................... .... ....... . . . ..... .......................................................................................... .. . . . . . ... . ........ ............. . ..... . ................ .... . . .. . . . ...................................... ...... . . . . . .. . . . . ..... . .. ..... . . . . . . . ......................................... . .. .. . . . . ............................... ..... .... . ... ...... .. ..... . . . . .. .. ...... .... . . . . . . .............. ... . .. . . .... . . .. . .. ......................................... . . . . . . .......... . .. . ........ ..... . . .. .................. . . .................. .. . . . . . . .. ...... . .. .
lowQualScore : 7 1 7 7777 6 7 3 5 7 33333333333333 3 0 9999 4 1 1 1 888888 1 33 44444444444 66666666 1 666666666666666666666666666 77 77 777 3 7 7777 7 7 7 22222222222222222 1 7777777 7 7 9 22222222 77777777777 4 33 1 1 1 22 8 6 6 444 55 000000 888 888888 8 7 1 4444 6 00000000000 777777 4 4 4 4 8888888888 4 2 0 5555555555555555555 6666 4444444 4 4 7 22222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 8 0 4 7 6 666 1 11111111 2222222222222 0 22222 4 4444444444444444 9999 2 0 11 8 4 0 99999999999999999999999999999999999999 444444 0 4 0 2 0 11 2 4 9 4 00000 0 00 00000 3 0 0 4 4 7 4 88888888888888888888888888888888888888888 1 11 77 7 6 4 4 9999999999999999999999999999999 11111 4444 7 777 999999 00 33333 7 7 2 8 22 22 555555 2222 5 0 2 5 0 0 55555555555555 000 2 00 0 2 8888 4 0 44 0 00 22222222222222222222222222222222222222222 7 4 0 7 7 0 7777777777 0 77 5 88888888 55555 5 8 22 222222222222222222 0 0 222222222222222222 66 4 2 8 8 8 2 44 666666 0 66 8
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-CTA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---A-T--AA-ATTCT----AAACA---T--CA----G--GTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AA-TTC-GTTCATGTTCA------AATA-------A--ATCATT--TGAG-TTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNCTTT-AAA--TGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
Reference ( family-1442 ) : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-CTA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---A-T--AA-ATTCT----ACGCA---T--CA----G--GTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AA-TTC-GTTCATGTTCA------AATA-------A--ATCATT--TGAG-TTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNCTTT------TGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
gi|1 : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAACGAATCATCGAGCTA------GA---AATTT-ATACTCCGAGTACTCG-AT-A------AA-AC-ATT---C---A--CTTTCCAGTAAATTCT---A-A--AG-ATACA----CCACA---T--CA----G--GTCAATTT--TT---GAGT-AAAA-TCAT----GT-A-A-A-------G---T--AG-AAATGAAACCTG-----TCTT-AA-TTC-GTTCATGTCCA------TATA-------A--ATCAAT---GAG-AC-GGATGTTCGG-CCAG--TAAAAC-AT--CTCTGATGAGAGAGAC--TG---T--GGAGGCATA------CATTAAACGATCTCATG----TTGGAAAACCAATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGA----C----CAATCTGT-GAAGGGACAA-CAC------ACACATAATATTTATATC----AAGTGCCAATA-------TT-CGTCAGATT-CAGCAT---CAAATTCTCTCA-----AA-----AA------------CGAA----CA--------GA------TTCCGAAACAAAAC------ACA--AT-----CC--TTGACT-TTTACTG-ACAAAACTT-A-GAAATGGGC--------TGTCAACCAA---TTA-------GTTGT-TT--AATAAA-AT----------------ATAATATTAATGAAATCGTACATT-GAACATACATTT--GAAAGCCTT-TATAAAT----A---------T--------------------------T------TT-TATGC-TGTGGTG-AATTTT--GATTGCTGC-CGGTACAACA-TTTCATCAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCCG-TCACAAGGCAATGATTCAG-GCG-AACA-TA--C----G------G--------T----AA-TTG--TGGATC--TAATTTTTAA-AG-CAC-CCCTC-GTGT---AT-------A-------CC-----GTTGGAAT----TGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACACTCA--A-G-AAACTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAAT--ATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTGA-GGTACTTTTCATGCTAGCCCACT---------------ACCAAGGCCTG---TCTGTCATGATTA-AAATAT---GCTTAT-GTAATT-ATCTAAACCAGAGACCTATATACAACATTATATATGT--CCTTGA-TTCAATTTAACAAATTTCTAAAAGGCTATCCAGAT
gi|1 : TAATTGAATTAGATTGCAGAAGTA----GA----GCTC-AGATAAACAACCTTTC--------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATGCACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTGTA-T------GT--CGCT--CTCCCCTTTCTACCGAGTATTCGACTATCGCCCGGCTAAAGCCTCCGAATACTCGACTTAGCTATCTGAGT-ACAAATT-ACATCCCTtgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgataattgaattagattgcagaagtagagctcagataaacaacctttcaccagttaacttcgctattcgtatgcgccgaggtacatgcacatgtaatgtatgactaatgactgtgaaacacttgtacactgtatgtcgctctcccctttctaccgagtattcgactatcgcccggctaaagcctccgaatactcgacttagctatctgagtacaaattacatccct
gi|10 : gtcaacgagtattcgaatactcgactatcgctcggtcgtaacgaatcatcgagctagaaatttatactccgagtactcgataaaacattcactttccagtaaattctaaagatacaccacatcaggtcaatttttgagtaaaatcatgtaaagtagaaatgaaacctgtcttaattcgttcatgtccatataaatcaatgagacggatgttcggccagtaaaacatctctgatgagagagactgtggaggcatacattaaacgatctcatgttggaaaaccaatgaaatatacattatatgaattatgaaattgaccaatctgtgaagggacaacacacacataatatttatatcaagtgccaatattcgtcagattcagcatcaaattctctcaaaaacgaacagattccgaaacaaaacacaatccttgacttttactgacaaaacttagaaatgggctgtcaaccaattagttgtttaataaaatataatattaatgaaatcgtacattgaacatacatttgaaagcctttataaatatttttatgctgtggtgaattttgattgctgccggtacaacatttcatcatcaaaagaaattgaccgtttatctacttctccgtcacaaggcaatgattcaggcgaacatacggtaattgtggatctaatttttaaagcacccctcgtgtataccgttggaattgtggtaattttcatgaaaagaatagttgcacggcacactcaagaaacttctcagaaaaagaaaaacgtgtcccatgtttagttcacatgaacagaaacaatgaaataagatgtaaataaatatattggaatgcatttctgcacgtcttgtgttggatattgaggtacttttcatgctagcccactaccaaggcctgtctgtcatgattaaaatatgcttatgtaattatctaaaccagagacctatatacaacattatatatgtccttgattcaatttaacaaatttctaaaaggctatccagattgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgaGGCCGATA-------TT-CGTCAGAAT-CACC-------AATTCTCTCG-T---CA-----AA------------TCTT----CA--------AA------TA----AAAAAAAA------AAA--AT-----T---TGG
gi|10 : ---AA-----AA------------T-AA----CA--------GA------TACTGCAATAAAAT------A-----T-----CGGTTGGATA-GTTGCTG-ACAAAACTT-tgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|10 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccTTG--GAAAGACCT-TATAAAT----G---------TGT------------CTGCTTGATTCTT------TT-CATGC-CATAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCCTTATATTCATAAAA-GGAAAA-----ATGATTGTGTA-TCTACTTTTCAG-TCACGAGTCAGTGATTCAG-GTG-GA-gatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|11 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttGGGTACT-CGACTATCGCTC----GGTCGCATCGA-TCATCGA-CTA------AA---TTTTTCATAGTG-GAGTACTTG-TT-A------AA-A--ATA---AAAGT--ATTTCCAGTAAAGTTT---A-T--AA--TTCT----AAACA---C--TT----GCTGTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-A-------AGGTT--A--AAGTTAGACC-G-----GCTTGAA-TGC-ATTCATGTTCA------AATA-------A--ATGATT--CAAG-TTTGGATGTT-GG-TCAG--T-AAAC-GTGCCTCTAA---AATCCAC--TGTT-T--AGG--CATA------CTTTA-----------------------------GAAATG----T-------ATT-----ACA-TGTGTCTAT-AAAA-TTAAG---CTAG-CATTCTGT-GGA
gi|12 : atgtcaatGCGCACTCC--AAG-AATTTTT----AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGATAAA---------------GAATACATTTCT----GTCTTATACTA---ATTGAATATACCTT-CATGCTATCTTTCTTT------T---TAAACCCAAGCCTG---TCTGTTGTG-TCATAGCTAT---ACATGT-GTAATT-A---ATGCC-----------------ACTGC-----T--AGT---------CTGTACATATTTGTAAACGGTTATCCTGAT
gi|12 : ataTAAACGGTTATCCTGA-TTTCACCAGTGA-------------TGCGCGCTGAAGTAT------------------GATTGATGACTTTGAAACACTAGTACACTGTC-A------GT--ttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|13 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgAGTACT-CGACTATCGCCC----GGTCGTATCGA-TCATCGA-CTA------AATTTATTTT-ATAGTC-GAGTACTCG-TT-ACATGTAAA-A--ATAGTCC---T--TTTTTCAGTAAAGTCA---A-T--AC-ATTCT----AAACACTTT--GAAGTGG--GTT--TTTTGGT---GAGT-AAAA-TCAT----GT-A-A-A-------G--------------------G-----TTTT-AA-TCC-GTTCATGTTCA------TATA-------A--ATCATT--TGAG-TTTGGATGTT-AG-TCAG--T-AAAC-ATGCCTCAAA---AATCCAC--TGTTTT--GGA--CATACATGTCCTTTAAAAGATATCTTG----ATGGAAAtccc
gi|14 : tcaactGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTACCGA-TCATTGA-CTA------AA---TTTTT-ATAGTC-CAGTATTCA-TT-A------AA-A--ATA---CCC-T--TTTTACAGTAAAGTTT---A-T--AA-ATTTT----AAACAAT-T--CA----GT-GTT--TAT--AT---GAGT-AAAA-CCAT----GT-A-A-A-------GG--C--A--AAGTCAAAAC-G-----TTTT-AA-TTC-ATTCATGCTCA------AATA-------A--ATTATT--TTAG-TTTGGATATT-AG-TCAG--T-AAAC-ATGCTTACAA---AATCCAC--AG---T--g
gi|15 : cagtgatAGTACT-CAACTATCGCTC----GGT-G-ACCGA-TCATTGA-CTT------AA---ATTTTTATAGCC-C--TATTCGATT-A------AA-ACTACC---C---T--TTTTACAGTAAAGTTTTGAG-TTGAA-ATTTTTGAAAC-CAATTT--CA---------T--TTT--GTTACGAGTTAACA-TTATATGTGT-A-A-ACAGG---A---C--A--AAGTCAAAAC-G-----TTTT-AAATTC-ATTCATGCTCT------AATA-------ATAATTATT--TTAGGTTTGGATATT-AG-TCAGTATAAAAC-ATGCTTACAA---AATCCAtccag
gi|16 : GTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-CTATTCAGCAA---AGTTT-ATATTT-----------TT-A------AA-C--ATT---T---CAGTTTGTGAGTAAA---T-----T--AA-TTTCT----AAACACT-T--CA----G--TTT--TTT--GT---GAGT-AAAA-TCAT----GT-A-A-AG------G---T--G--AAGTCAAACC-GC----TTTT-AA-TTC-TTTGATG-TCA------AATA-------A--AT--TTACTGTG-TTTGGATTGT-GG-TCGG--T-TAAC-ATGCCTCTGA---ATGCCAC--TGTTTT--GGA--CATA------CTTTAGAA
gi|17 : TCTAGTACT-CGACTATCGCTC----ATTCGTACCGA-TCATCGA-CT--------A---ATTTT-TT--TC----TA---G-TT-A------GG-A--ACT---C---T--TTTTGCAGTAAAGTTT---A-T--GA-ATTTT----AAGCA---T--TT----GA-ATG--GTT--AT---GTGT-AAAA-CCAC----GT-ATA-G-------G---T--A--ACGTCAAA--------------A------GTTCATGTTC-------------------------TT--TGAG-TTTGGGTGTT-CG-TCAA--T-AAGC-ATGCCTTCGA---AAACCAA--TA---T--GGA--CATA------CTTTAAAATATCTTTTG----ATatatatt
gi|18 : tcaAACCCAAGTGTGCCATCTGTT----TCA-AGCTA----ACACGTGGTACTT-ATATTCACTGA---------------GTTA-A-ATCT--AAACAG-CTAAATTGAA
gi|18 : TTGAAATACTTCTTCTCTGCCCA------GT----AT--CTCCCTTCTTAACCGA-TACTAGACTATAGATCGACTAAAGCCTCAGAAAACTCGG-TAAGCTATCCGAGT-AAAAGCTGAC-TCCCTacttcgctttcttatggtgcttgaaatacttcttctctgcccagtatctcccttcttaaccgatactagactatagatcgactaaagcctcagaaaactcggtaagctatccgagtaaaagctgactcccta
gi|19 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcTACTCGAATATTGTGAATATCGCTC----GGTTATACTGA-T-----A-CT----------------C-ATATTT-GCTTACT-G-TT-A------CA-A--TTA---T---T--TTTTTTAG----GTTT---AAT--AATATTTT------GTA---G--TA----C--ATT--CTT--GT---A--T-AAA-----T----GA-A-G-G-------G---TTCA--AAGTCAA-CA-G-----TTTT-AA-TTCTGTTCATGTTCT------AAAA-------G--ATCATT--CGCA-TTTGGGTTTT-GGCTCGT--TAAAa
gi|2 : atATCTCATG----ATGGAAAATCGGTCGAATA----TA-----CATT-----ACA-TGAAT-TAT-GAAA-TTAA----G----CATTCTGT-GGAGGGACAA-CAA------CCA-----TGT--ATATT----AAAGGCCAATA-------TT-CGTCAGAAT-CACCATATTTAAATTCTCTCA-TCTAAATCTTCAATT----------CGAAATAACA--------GA------TACAGAAAAAAAA--------------------------ATA-TCCGCTG-G--AAACTT-A-GAAATAGGT--------TGAAAACCAA-A-TTA-------GTTTT-TG--AACAAA-TT----------------GCAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGTTTGCTTGACAAGTT-------TCTT------TT-T-TGC-CATAGTG-CATTTT--GAGTGTTGC-TTGTACTACG-TTTCATTAT-----CAAAG-G--AAA-----TTGACTGTTTA-TCTACTACTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-T---T----G------GCTTCTGAAT----AATTT---TGTGTC--TATTGTGTTC-AG-CAC-CCATC-ATGT---ATCAC----A-------CC-----TTCAAAGA----TGTGTTGA--TTCATGAAAA-A----TGGCACGGCGCACTCC--ATG-AATTTTCTCAGAAAAAAAA-----TGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGA-A-TGGAATGCATTTCT----GTCTCACATTGGATATTGA-TGTATTTTTCATGCCAGCGTTCTTGAAAA--TGAATTAACCCAAGCCTG---TCTGTTGTGTTCA-AGCTAT---ACGCAT-GTAATTGATTTA-ACCGG---------------A----ACA-----AATTAAGTT---CTAAACAGtcttcgtct
gi|2 : TAATTGATTTAACCGGAACAAATT----AA----GTTC----TAAACAG-CTATCGG---------AG-----TTCCCTATGTGCGCGCGCTGAGGTATAT------------------TTGATGACTTTGAAACACTCATACCCTGTC-A------GTCCCCCC--CCCCCCTTTTAACAGCACACTCGACTATCGCTCAATT-AAGCCACCAAGTACTCAACTAAGCTATCCGAGT--AAAATTGACATCCCTctatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|20 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgCTATACATGTGTAATAAAATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATa
gi|20 : tgttctagCTTTGAGATACTTTTACCATGTC-A------GTT-CGTT--TTTT--TTTTTACCGAGTACTCAACTATCGCTTGACTAAAGTCTCCGAGTA--------------CCGAGT--AAAATTGACACCCTTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|21 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgC-TGGTGCAATG-TTTCAATAC-----CAAAGTA--AAA-----TTG-CCGTTTA-TCT---TCTCTG-TCACGAGTTAGTTATTCAG-TTG-GA-A-CT--C----G------G--------TCCCCAA-------GGAT--------------AG-AAC---------GC---AC-------A-------CC-----TTCAAAGTAAGGTGGATTAATTTCCTTGGAAA-AAT-GTT---CGGCGCA-TCCTTT-T-AATTTTCTTAGAAAAACAA---CATGCTCTATGTTTAaag
gi|22 : TACTCGAATATT--GAATATCGCTC----GGTTATACTGA-T-----A-C----------------TC-ATATTT-GATTACTTG-TT-A------AC-A--ATT---T---T--TTTTTT--T--AGTTT---A-A--TA-AT-----------A---T--TA--------TT--TTT--------AGT--ACA-TTGT----AT-A-A-ACTTAAGGG---T--A--AAGTCAAACCAG-----TTTT-AA-TTC-GTTCAc
gi|23 : -----CATA-----ATA-TGAAT-TAT-AAAA-TTTG----CATAGCATTCTA--AGATGGAC---CAA------A-----AATGT--ATATT----AAAGACCGATA-------TTCCGTTAGAAT-CATT-TAA-TAAATTATCTCGTT---AA-----AA------------
gi|24 : ATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTTATTCTCCG-TCATAAATCAATG-------GCT-AA-T-TA--T--------------------C----AA-TT---TG-ATC--TATTGTGTAA-AC-CAC-----------------------A-------CC-----TTCGAAGT----TGTGTTAATTTTTATGAatgtgaattcaaata
gi|25 : CA---C--TA----T--GCT--TTT--GT---GAGT-AAAA-TCAT----AT-A-A-AG------G---T--A--TAAT-AAAAC-GTATTTTTTT-AA-GTC-GTTCATGTTCA------AATT-------A--ATTATGA-TGAG-CATAGATATT-GG-TCGG--TGA
gi|26 : AA----GA--------GA------TACCGGGAAAAA--------------T-----T---TCGA-A-TG-GCTG-ACAAAACTA-A-GAAACAGAC--------TGACGACCAA-A-TAA-------GTTTCAGG--AACAAA-TC----------------GTA
gi|27 : ccacaaataccccaaatGGC--------TGTCAACCAA---TTA-------GTTAT-CT--AATAGG-TC----------------GTAATA---ATGAAATCGTACCTT-GAACATACGTTG--GAAAG--CC-TATATAT----A---------T
gi|28 : a---TGGATC--TGTTGTATAA-AG-CAC-C-ATCAGTGT---AT-------AACGCATTCC-----TCCGAAGT----TGTGTTACTTTTCATTAAAA-
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-TTATTCAGCAA---AGTTT-ATAATT-G-GTAC
gi|3 : ctTACCCGAATACT-CGACTATCGTTC----GGTTGTACCGA-TCATCCA-CTA------AA---ATTTTTATACTC-GAGTACTCG-TT-A------AA-A--ATA---G---C--CATTTCAGTAAATTTT---A-A--AG-AT---------GCA---T--CG----GT-GCT--ATT--TT---GAGT-AAAA-TCAT----GG-A-A-A-------GG--T--A--AAGTCAAACAAG-----TTTT-AA-TTC-ATTTATGTTCA------TATG-------C--ATCATT--TGAA-TTTGGGTGTT-GA-TCAG--TAAA-C-ATGCCTCTGA---AATACAC--TG---TATGTG--CATA-------TTTAAAGAATTTCATG----GTACAGAATCGATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGAACAAT----CATTTTGT-GAAGGGACAA-CAA------AAAC---------ATATT----AAATGCCAATA-------TT-CGTCGGAAT-CGTCAT---CAAGTTCTCTCA-A---AA-----AA------------TGAA----CA--------GA------TGTCT---AAAATC------AAATTAG-----C---TTGATA-TTTACTG-ACAAAACTT-A-GAAGCAGGC--------CGTCAACGAA-G-T-A-------GTTAT-TT--AATAAA-TC----------------GTAATA---ATGAAGTCGTACTTT-GAACATACATTG--TAACGCCTT-TACAAAT----A----------------------------------CTT------TT-TATGC-CGTAGTG-AATTTT--GATTGTTGC-CTGCACAGTA-TTTCATTAT-----CAAAC-G--AAA-----TTGACAGTTTA-TATATTTCACAG-TCACACGTCAACGATTCAG-GCG-AA-C-CT--T----G------GA-------T----AA-TTA--TGGATC--TA-TTTCTAA-AG-CAC-ACCTC-TTGT---ATAACCAACA-------CC-----TTCGAAGT----TGTGTAAATGTTCATAAAAT-CAAAGTTGCATGGCGCACTTC--A-ATAATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATGAAAATAAAT--cg
gi|30 : ttagggatgtcacccacACT-CGGCTATCGCTCCCGAGGTCGTACCGA-TCATCGA-CTA------AAT--ATTTC-A
gi|31 : gtctaggg---T--CA----G--TGT--TTT--GT---AAGTGAAAA-CTAT----GT-A-ATG-------G---T--C--AAATCAAACCGG-----TTTT-AA-
gi|4 : ATTTT--GATCATTGC-TTGTACAACT-TTTCCTTATATTCGTAAAA-GGAAAA-----ATGATCGTTTA-TCTACTTCTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-C------------------------T----AG-CTCCATGGGTC--TATTTTATAA-AG-CAC-CCATA-GTGT---AT-------A-------ACACATGTTCAAAGT----TGTGTTAATTTTTACG--AA-AATAATTGCACGGTGCTCTCA--G-G-AATTTTCT--GGGGGGAAAAAGCACACCCCATGTTTATTTCTCA-AAA-AGAAAGAGT----T---AT-----TAGAT--A-T-TGGAATGAATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATG-CAGCGTACTTTTAAATATGAATAAACCCAAACCTG---TCTGTTGT----A-A--TACAGAACAC-T-GT------TCTAG---------------------CTATACATGT--AATTAA-TTCAACTGAACAGTTTTATAAACGGCGATCTAGAT
gi|4 : TAATTAATTCAACTG-AACAGTTTTATAAACGGCGATCTAGATAAACAGCCTTTCGGAATT-CACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTTCAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTC-ATTTTGGGT--TGGTGGTTTTTTTTTTTACTGAGTATTCAACTA---------TAA---CTCC---------ACTAAACTATCCGAATAAAAAACTGACATCTCTaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|5 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgTCAACGAGTAT---GGTACT-CGACTATCGCTC----GG-AGTAC-------TTGA-TTA------AA---A-------------AATA--------A------CA-A--A-C---C---T--TTTTTCAGTAAAGTCT---A-T--AA-ATTCT----AATCAAT-T--CA----GT-ATT--TTT--GT---GAGT-AAAA-TCAT----GA-A-A-A-------GG--T--A--AAGTCAATCC-GG----TTTT-AA-TTC-GTTC---------------T------------TCATT--TGCG-TGTGGATGTT-GG-TCAG--TAAA-C-ATGCCGCCGA---AATCCAC--TG---TTTGGA--CATA------CTTTAAAAGATCTTACG----ATGGAAACCTGGTGAAATG--------------------ATA-TGAA---AT-TGAA-CTG-----C----CATTCCGT-GGAATGACAA-CAA------ACACA-----T--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CACAAT---TGAATTCCCTCG-T---CA-----AAGTCTT-------CATG----CT--------GGTGAGTTTGCCACAAAAACAC------CAA--ATAA---C----AGATA-----CCG-A-AAA---T-A-AAAATGGGCTGGGTAGTTGCTGACAAA-ACTTAGAAATAGGCTGT-CG--ACCAAA-TTAGCTTTTTAGCAAATAGTAATC---ATGAAATCGTACATA-GGA-ATACAATG--GATGGACCT-TAT--GT----T---------TG-------------TT-------TCTT------TT-TATGC-CGTAGCG-GAGTTT--GAATGTAGC-TCGT---ACA-TTTCATTAT-----CAAAA-GA-AAA-----TTGACCGTTTA-aat
gi|6 : atgaataTGAAATG----TATCATGCATATATCTATAATGAAT-TATTGCAACTTGA----TATG-CATTCTGTTGAAGGAACAATCAACCACGTACACGTAGTCT--ATATTCGTCAGAATCTTATAATTTTCTCT-CGTCA-AATGTGTTGG---TGAATTCGC-CA-C---AA-----AAACACAGCCACAATAAAACCCCA--------GA------T-CCAGAAGAAAAC------ATA--TTGG---C---TGGATAGTTTGAAA-AAAAAACTTTACGAAATAGGC--------TGTCGACCAACA-ATA-------GTTTT-TTGCAGCAAAATA----------------GCAATA---ATGAAATCGTACATT-GAACATAC-TTGTTGAAGGATCTATATTAAT----ATGCTTTGTTTGT------------TT-------TCTT------TT-TTTGCTTGTGGTG-CATTTTTGGAT-GTTACTTTTTTTGACATTTTCAAT-T-----GGAGG-G--AAA-----TTGACTTTTTATTCTACTT---AGTTCACGAGTCAGTGATTCAGAGTGAAA-A-TAGGCTCCAG------A--------T----AA-TT---TGAGTC--T-TATTGTAATAGCCAC-TATTT-GTATAAAAC-------A-------CC-----TTCAAAGT----TGTG-TGATTTACTTGAAAA-AA---TCGCAC-GTACACTCC--A---AATT-----AGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AAT
gi|7 : CGAGTACT-CGACTATCGCTC----GGTCG--------CAT--A-CTA------AA---TTTTTCATACTC-GAGTACTCG-TT-A------AA-A--ATG---G---C--CTTTTCAGTAAATTTT---A-T--AA-ATTCT----AAACA---TGTCA----GT-GTT--TTT--GT---AAAT-AAAA-CCAT----GTCA-A-G-------G---T--ACAAAGTAAAACC-AC----TTTT-AA-CTC-GTTTATGTTCA------AATG-------C--ATCATT--TGAG-TTTGGATTTT-GG-TCAG--TAATCCGATGCCTTCGA---AATCCAC--TGCC-T--GGT--CAT---------------GATCTCGTG----ATGGAAATCCGGTGAAATGAACGTA-----CATC-----ATT-TGAAA--AT-GAAA-TCGAAC--CAG--CATTCTTT-AGAGG-ACAA-CAA------ACATACAGTGT--ATATT----AAAGGCCGATG-------TT-CGTTAGAAT-CGCCAT---TAGATTCTCTCGTT---AA-----GACCTTCAATT---CAAA----CATTTTTGGTGAGTT---CACCACAAAAAGGCCAGATAAAA--ATATCTAC---TAGATA-TTTGCTGTTCAAAGCTT-A-AAAATTAGC--------TATCGACCAA-A-TTA-------GATTT-TA--AACAAA-TC----------------GTTATA---ATGAAATCGTACATT-GAACATACATTG--GAGAGACTT-TATA-----------------------------------------TTTG------TT-TAGGC-CGCAGAG-CAATTT--GA
gi|8 : gatgtcaaCGAGTACC-CGACTATTGCTC----GGTCATAC---------AA-CTG------AA---GTTTTCATAGTC-AAATATTCG-TCCA------AACA--GTG---T---T--TTTCTT-GTAAAGTTG---A-T--AA-ATT----------A-------A----GT-GTT--TTT--GT---GAGT-AAAACTCGT----GT-A-A-A-------GG--T--C--ACGTCAAATTTG-----TTTA-AA-TCC-GTTCATGTTCATGATCAAATACATTGTAA--ATCATT--TGAG-TTTGGATGTC------------------TGACTCCAA---AATTCACAGTG---T--GG---CGTA------CTTTAAAAGATTTCATGTCGTATGAACAACCGGTGAAATG----TA-----TATG-----ATG-TGAAT-T-T-GAAC-TTG----------CATTATGT-GGAGGATCAA-CAA------ACTTGCA-T-C--ATATT----AAAGGCTGATA-------TC-CGTCAGAAT-CACCGT---TAAAATCTCTCG-
gi|9 : gatgtcaaTTGC---ATAAA--TT---GAAACAGGT--------TGTTTTCCAA----TA--------TTGT-CC--GCCAA---C----------------GTATT-----TTAAATAGT---TTCGTACATACATTG--GAAACACCT-TTTAAATTTATA---------TGT------------TT-------GCTTGTTTCATTGTATGC-C-TAGAGACATTTT--GATTGTTGT-TTGCTCAACA-TTGCATGAT-----CAAAA-T--AAAAGTTATTGAA----TA-TTTACTTCTCTG-TTACAAATCGGTGATTCGG-TTG-AA-AGTA--T----GCCGCACG--------T----GA-TGAA-TGGATTAATAATTATTAT-AG-CGCGCCCTC-GCGT---ATAATGCA-A-------CC-----CTCAAAGT----GAATTTGAATGTCATGAAAcctttgtcttcaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111111 1 1111 11111111111 3333333333333333 33333333333333333 2222222 11111111 11111111 1 222222 111111 11111111111 111111 5555555555 4444444444444444444 1111 1111111 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111111111 11111 2222222222222222 77777777777777777777777777777777777777 111111 22222 11 11111 77777777777777777777777777777777777777777 4444444444444444444444444444444 11111 111 222222 11111 333333 2222 1 5555555555555555 111 22 1111 77777777777777777777777777777777777777777 4444444444 22 44444444 11111 999999999999999999 222222222222222222 111111 11
lowQualScore : 0 0 2 5555 2 2 3 1 2 2 8888888888888 0 3 0000 2 2 3 3 888888 3 77 77777777777 888 44 3 6666666 7777777777777777 444 33 33 444 2 2 2 5555 2 2 2 00000000000000000 1 0000000 5 2 00000000 55555555 1 77 3 3 3 44 2 5 3 666 55 777777 888 222222 0 0 1 9999 1 99999999999 333333 4 4 4 4 3333333333 4 0 5 3333333333333333333 0000 4444444 4 4 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55 0 1 4 5 3 666 3 66666666 9999999999999 1 00000 4 9999999999999999 8888 0 5 66 1 4 2 66666666666666666666666666666666666666 444444 5 0 5 0 5 66 6 4 3 4 00000 4 55 00000 2 4 1 4 4 0 4 99999999999999999999999999999999999999999 0 66 55 1 2 4 4 5555555555555555555555555555555 11111 9999 5 555 444444 88 88888 6 6 3 0 44 66 111111 1111 2 0 3 2 1 1 8888888888888888 444 3 11 8 3 7777 6 8 11 8 44 99999999999999999999999999999999999999999 6 1 1 0 6 1 3333333333 1 00 6 22222222 44444 6 0 33 666666666666666666 1 1 777777777777777777 44 1 3 0 0 0 3 22 222222 1 88 0
lowQualScore : . . . .... . . . . . . ............. . . .... . . . . ...... . .. ........... ... .. . ....... ................ ... .. .. ... . . . .... . . . ................. . ....... . . ........ ........ . .. . . . .. . . . ... .. ...... ... ...... . . . .... . ........... ...... . . . . .......... . . . ................... .... ....... . . . ..... .......................................................................................... .. . . . . . ... . ........ ............. . ..... . ................ .... . . .. . . . ...................................... ...... . . . . . .. . . . . ..... . .. ..... . . . . . . . ......................................... . .. .. . . . . ............................... ..... .... . ... ...... .. ..... . . . . .. .. ...... .... . . . . . . ................ ... . .. . . .... . . .. . .. ......................................... . . . . . . .......... . .. . ........ ..... . . .. .................. . . .................. .. . . . . . . .. ...... . .. .
lowQualScore : 7 1 7 7777 6 7 3 5 7 7 2222222222222 7 0 9999 4 1 1 1 888888 1 33 44444444444 555 22 1 7777777 7777777777777777 777 77 77 777 7 7 7 7777 7 7 7 22222222222222222 1 7777777 3 9 22222222 22222222 4 33 1 1 1 22 8 6 6 444 55 000000 888 888888 8 7 1 4444 6 00000000000 777777 4 4 4 4 8888888888 4 2 0 5555555555555555555 6666 4444444 4 4 7 22222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 8 0 4 7 6 666 1 11111111 2222222222222 0 22222 4 4444444444444444 9999 2 0 11 8 4 0 99999999999999999999999999999999999999 444444 0 4 0 2 0 11 2 4 9 4 00000 0 00 00000 3 0 0 4 4 7 4 88888888888888888888888888888888888888888 1 11 77 7 6 4 4 9999999999999999999999999999999 11111 4444 7 777 999999 00 33333 7 7 2 8 22 22 555555 2222 5 0 2 5 0 0 5555555555555555 000 2 00 0 2 8888 4 0 44 0 00 22222222222222222222222222222222222222222 7 4 0 7 7 0 7777777777 0 77 5 88888888 55555 5 8 22 222222222222222222 0 0 222222222222222222 66 4 2 8 8 8 2 44 666666 0 66 8
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---AT--AA-ATTCT--A-AACA---T--CA----G--GT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
Reference ( family-1442 ) : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---AT--AA-ATTCT--A-AACA---T--CA----G--GT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
gi|1 : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAACGAATCATCGAGC-TA------GA---AATTT-ATACTCCGAGTACTCG-AT-A------AA-AC-ATT---C---A--CTTTCCAGTAAATTCT---AA--AG-ATACA--C-CACA---T--CA----G--GT---CAATTT--TT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--AG-AAATGAAACCTG-----TCTT-AATTC-GTTCATGTCCA------TATA-------AATCAAT---GA-GAC-GGATGTTCGG-CCAG--TAAAAC-AT--CTCTGATGAGAGAGAC--TG---T--GGAGGCATA------CATTAAACGATCTCATG----TTGGAAAACCAATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGA----C----CAATCTGT-GAAGGGACAA-CAC------ACACATAATATTTATATC----AAGTGCCAATA-------TT-CGTCAGATT-CAGCAT---CAAATTCTCTCA-----AA-----AA------------CGAA----CA--------GA------TTCCGAAACAAAAC------ACA--AT-----CC--TTGACT-TTTACTG-ACAAAACTT-A-GAAATGGGC--------TGTCAACCAA---TTA-------GTTGT-TT--AATAAA-AT----------------ATAATATTAATGAAATCGTACATT-GAACATACATTT--GAAAGCCTT-TATAAAT----A---------T--------------------------T------TT-TATGC-TGTGGTG-AATTTT--GATTGCTGC-CGGTACAACA-TTTCATCAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCCG-TCACAAGGCAATGATTCAG-GCG-AACA-TA--C----G------G--------T----AA-TTG--TGGATC--TAATTTTTAA-AG-CAC-CCCTC-GTGT---AT-------A-------CC-----GTTGGAAT----TGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACACTCA--A-G-AAACTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAAT--ATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTGA-GGTACTTTTCATGCTAGCCCAC-T---------------ACCAAGGCCTG---TCTGTCATGATTA-AAATAT---GCTTAT-GTAATT-ATCTAAACCAGAGACCTATATACAACATTATATATGT--CCTTGA-TTCAATTTAACAAATTTCTAAAAGGCTATCCAGAT
gi|1 : TAATTGAATTAGATTGCAGAAGTA----GA----GCTC-AGATAAACAACCTTTC--------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATGCACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTGTA-T------GT--CGCT--CTCCCCTTTCTACCGAGTATTCGACTATCGCCCGGCTAAAGCCTCCGAATACTCGACTTAGCTATCTGAGT-ACAAATT-ACATCCCTtgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgataattgaattagattgcagaagtagagctcagataaacaacctttcaccagttaacttcgctattcgtatgcgccgaggtacatgcacatgtaatgtatgactaatgactgtgaaacacttgtacactgtatgtcgctctcccctttctaccgagtattcgactatcgcccggctaaagcctccgaatactcgacttagctatctgagtacaaattacatccct
gi|10 : gtcaacgagtattcgaatactcgactatcgctcggtcgtaacgaatcatcgagctagaaatttatactccgagtactcgataaaacattcactttccagtaaattctaaagatacaccacatcaggtcaatttttgagtaaaatcatgtaaagtagaaatgaaacctgtcttaattcgttcatgtccatataaatcaatgagacggatgttcggccagtaaaacatctctgatgagagagactgtggaggcatacattaaacgatctcatgttggaaaaccaatgaaatatacattatatgaattatgaaattgaccaatctgtgaagggacaacacacacataatatttatatcaagtgccaatattcgtcagattcagcatcaaattctctcaaaaacgaacagattccgaaacaaaacacaatccttgacttttactgacaaaacttagaaatgggctgtcaaccaattagttgtttaataaaatataatattaatgaaatcgtacattgaacatacatttgaaagcctttataaatatttttatgctgtggtgaattttgattgctgccggtacaacatttcatcatcaaaagaaattgaccgtttatctacttctccgtcacaaggcaatgattcaggcgaacatacggtaattgtggatctaatttttaaagcacccctcgtgtataccgttggaattgtggtaattttcatgaaaagaatagttgcacggcacactcaagaaacttctcagaaaaagaaaaacgtgtcccatgtttagttcacatgaacagaaacaatgaaataagatgtaaataaatatattggaatgcatttctgcacgtcttgtgttggatattgaggtacttttcatgctagcccactaccaaggcctgtctgtcatgattaaaatatgcttatgtaattatctaaaccagagacctatatacaacattatatatgtccttgattcaatttaacaaatttctaaaaggctatccagattgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgaGGCCGATA-------TT-CGTCAGAAT-CACC-------AATTCTCTCG-T---CA-----AA------------TCTT----CA--------AA------TA----AAAAAAAA------AAA--AT-----T---TGG
gi|10 : ---AA-----AA------------T-AA----CA--------GA------TACTGCAATAAAAT------A-----T-----CGGTTGGATA-GTTGCTG-ACAAAACTT-tgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|10 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccTTG--GAAAGACCT-TATAAAT----G---------TGT------------CTGCTTGATTCTT------TT-CATGC-CATAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCCTTATATTCATAAAA-GGAAAA-----ATGATTGTGTA-TCTACTTTTCAG-TCACGAGTCAGTGATTCAG-GTG-GA-gatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|11 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttGGGTACT-CGACTATCGCTC----GGTCGCATCGA-TCATCGA-C-TA------AA---TTTTTCATAGTG-GAGTACTTG-TT-A------AA-A--ATA---AAAGT--ATTTCCAGTAAAGTTT---AT--AA--TTCT--A-AACA---C--TT----GCTGT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------AGGTT--A--AAGTTAGACC-G-----GCTTGAATGC-ATTCATGTTCA------AATA-------AATGATT--CAA-GTTTGGATGTT-GG-TCAG--T-AAAC-GTGCCTCTAA---AATCCAC--TGTT-T--AGG--CATA------CTTTA-----------------------------GAAATG----T-------ATT-----ACA-TGTGTCTAT-AAAA-TTAAG---CTAG-CATTCTGT-GGA
gi|12 : atgtcaatGCGCACTCC--AAG-AATTTTT----AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGATAAA---------------GAATACATTTCT----GTCTTATACTA---ATTGAATATACCTT-CATGCTATCTTTC-TTT------T---TAAACCCAAGCCTG---TCTGTTGTG-TCATAGCTAT---ACATGT-GTAATT-A---ATGCC-----------------ACTGC-----T--AGT---------CTGTACATATTTGTAAACGGTTATCCTGAT
gi|12 : ataTAAACGGTTATCCTGA-TTTCACCAGTGA-------------TGCGCGCTGAAGTAT------------------GATTGATGACTTTGAAACACTAGTACACTGTC-A------GT--ttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|13 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgAGTACT-CGACTATCGCCC----GGTCGTATCGA-TCATCGA-C-TA------AATTTATTTT-ATAGTC-GAGTACTCG-TT-ACATGTAAA-A--ATAGTCC---T--TTTTTCAGTAAAGTCA---AT--AC-ATTCT--A-AACACTTT--GAAGTGG--GT---T--TTTTGGT---GAG-T-AAAA-TCA----TGT-A-A-A-------G--------------------G-----TTTT-AATCC-GTTCATGTTCA------TATA-------AATCATT--TGA-GTTTGGATGTT-AG-TCAG--T-AAAC-ATGCCTCAAA---AATCCAC--TGTTTT--GGA--CATACATGTCCTTTAAAAGATATCTTG----ATGGAAAtccc
gi|14 : tcaactGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTACCGA-TCATTGA-C-TA------AA---TTTTT-ATAGTC-CAGTATTCA-TT-A------AA-A--ATA---CCC-T--TTTTACAGTAAAGTTT---AT--AA-ATTTT--A-AACAAT-T--CA----GT-GT---T--TAT--AT---GAG-T-AAAA-CCA----TGT-A-A-A-------GG--C--A--AAGTCAAAAC-G-----TTTT-AATTC-ATTCATGCTCA------AATA-------AATTATT--TTA-GTTTGGATATT-AG-TCAG--T-AAAC-ATGCTTACAA---AATCCAC--AG---T--g
gi|15 : cagtgatAGTACT-CAACTATCGCTC----GGT-G-ACCGA-TCATTGA-CTTA------AA---TTTTT-ATAGCC---CTATTCGATT-A------AA-ACTACC---C---T--TTTTACAGTAAAGTTTTGAGTTGAA-ATTTTTGA-AAC-------CA----A--TTTCAT--TTT--GTTACGAGTT-AACA-TTATATGTGT-A-A-ACAGG---A---C--A--AAGTCAAAAC-G-----TTTTAAATTC-ATTCATGCTCT------AATAAT-----AATTATT--TTAGGTTTGGATATT-AG-TCAGTATAAAAC-ATGCTTACAA---AATCCAtccag
gi|16 : GTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-C-TATTCAGCAA---AGTTT-ATATTT-----------TT-A------AA-C--ATT---T---CAGTTTGTGAGTAAA-T------T--AA-TTTCT--A-AACACT-T--CA----G--TT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-AG------G---T--G--AAGTCAAACC-GC----TTTT-AATTC-TTTGATG-TCA------AATA-------AAT--TTACTGT-GTTTGGATTGT-GG-TCGG--T-TAAC-ATGCCTCTGA---ATGCCAC--TGTTTT--GGA--CATA------CTTTAGAA
gi|17 : TCTAGTACT-CGACTATCGCTC----ATTCGTACCGA-TCATCGA-C-T--------A---ATTTT-TT--TC----TA---G-TT-A------GG-A--ACT---C---T--TTTTGCAGTAAAGTTT---AT--GA-ATTTT--A-AGCA---T--TT----GA-AT---G--GTT--AT---GTG-T-AAAA-CCA----CGT-ATA-G-------G---T--A--ACGTCAAA--------------A-----GTTCATGTTC-----------------------TT--TGA-GTTTGGGTGTT-CG-TCAA--T-AAGC-ATGCCTTCGA---AAACCAA--TA---T--GGA--CATA------CTTTAAAATATCTTTTG----ATatatatt
gi|18 : tcaAACCCAAGTGTGCCATCTGTT----TCA-AGCTA----ACACGTGGTACTT-ATATTCACTGA---------------GTTA-A-ATCT--AAACAG-CTAAATTGAA
gi|18 : TTGAAATACTTCTTCTCTGCCCA------GT----AT--CTCCCTTCTTAACCGA-TACTAGACTATAGATCGACTAAAGCCTCAGAAAACTCGG-TAAGCTATCCGAGT-AAAAGCTGAC-TCCCTacttcgctttcttatggtgcttgaaatacttcttctctgcccagtatctcccttcttaaccgatactagactatagatcgactaaagcctcagaaaactcggtaagctatccgagtaaaagctgactcccta
gi|19 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcTACTCGAATATTGTGAATATCGCTC----GGTTATACTGA-T-----A-C-----------------TC-ATATTT-GCTTACT-G-TT-A------CA-A--TTA---T---T--TTTTTTAG----GTTTA--AT--AATATTTT--GTAGTA------CA--------T---T--CTT--GT-----A-T-AA-----A----TGA-A-G-G-------G---TTCA--AAGTC-AACA-G-----TTTT-AATTCTGTTCATGTTCT------AAAA-------GATCATT--CGC-ATTTGGGTTTT-GGCTCGT--TAAAa
gi|2 : atATCTCATG----ATGGAAAATCGGTCGAATA----TA-----CATT-----ACA-TGAAT-TAT-GAAA-TTAA----G----CATTCTGT-GGAGGGACAA-CAA------CCA-----TGT--ATATT----AAAGGCCAATA-------TT-CGTCAGAAT-CACCATATTTAAATTCTCTCA-TCTAAATCTTCAATT----------CGAAATAACA--------GA------TACAGAAAAAAAA--------------------------ATA-TCCGCTG-G--AAACTT-A-GAAATAGGT--------TGAAAACCAA-A-TTA-------GTTTT-TG--AACAAA-TT----------------GCAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGTTTGCTTGACAAGTT-------TCTT------TT-T-TGC-CATAGTG-CATTTT--GAGTGTTGC-TTGTACTACG-TTTCATTAT-----CAAAG-G--AAA-----TTGACTGTTTA-TCTACTACTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-T---T----G------GCTTCTGAAT----AATTT---TGTGTC--TATTGTGTTC-AG-CAC-CCATC-ATGT---ATCAC----A-------CC-----TTCAAAGA----TGTGTTGA--TTCATGAAAA-A----TGGCACGGCGCACTCC--ATG-AATTTTCTCAGAAAAAAAA-----TGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGA-A-TGGAATGCATTTCT----GTCTCACATTGGATATTGA-TGTATTTTTCATGCCAGCGTTC-TTGAAA--ATGAATTAACCCAAGCCTG---TCTGTTGTGTTCA-AGCTAT---ACGCAT-GTAATTGATTTA-ACCGG---------------A----ACA-----AATTAAGTT---CTAAACAGtcttcgtct
gi|2 : TAATTGATTTAACCGGAACAAATT----AA----GTTC----TAAACAG-CTATCGG---------AG-----TTCCCTATGTGCGCGCGCTGAGGTATAT------------------TTGATGACTTTGAAACACTCATACCCTGTC-A------GTCCCCCC--CCCCCCTTTTAACAGCACACTCGACTATCGCTCAATT-AAGCCACCAAGTACTCAACTAAGCTATCCGAGT--AAAATTGACATCCCTctatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|20 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgCTATACATGTGTAATAAAATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATa
gi|20 : tgttctagCTTTGAGATACTTTTACCATGTC-A------GTT-CGTT--TTTT--TTTTTACCGAGTACTCAACTATCGCTTGACTAAAGTCTCCGAGTA--------------CCGAGT--AAAATTGACACCCTTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|21 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgC-TGGTGCAATG-TTTCAATAC-----CAAAGTA--AAA-----TTG-CCGTTTA-TCT---TCTCTG-TCACGAGTTAGTTATTCAG-TTG-GA-A-CT--C----G------G--------TCCCCAA-------GGAT--------------AG-AAC---------GC---AC-------A-------CC-----TTCAAAGTAAGGTGGATTAATTTCCTTGGAAA-AAT-GTT---CGGCGCA-TCCTTT-T-AATTTTCTTAGAAAAACAA---CATGCTCTATGTTTAaag
gi|22 : TACTCGAATATT--GAATATCGCTC----GGTTATACTGA-T-----A-C-----------------TC-ATATTT-GATTACTTG-TT-A------AC-A--ATT---T---T--TTTTTT--T--AGTTT--------A-AT-------AATA---T--TA--------T---T--TTT--------AG-T--ACA-TTG----TAT-A-A-ACTTAAGGG---T--A--AAGTCAAACCAG-----TTTT-AATTC-GTTCAc
gi|23 : -----CATA-----ATA-TGAAT-TAT-AAAA-TTTG----CATAGCATTCTA--AGATGGAC---CAA------A-----AATGT--ATATT----AAAGACCGATA-------TTCCGTTAGAAT-CATT-TAA-TAAATTATCTCGTT---AA-----AA------------
gi|24 : ATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTTATTCTCCG-TCATAAATCAATG-------GCT-AA-T-TA--T--------------------C----AA-TT---TG-ATC--TATTGTGTAA-AC-CAC-----------------------A-------CC-----TTCGAAGT----TGTGTTAATTTTTATGAatgtgaattcaaata
gi|25 : CA---C--TA----T--GC---T--TTT--GT---GAG-T-AAAA-TCA----TAT-A-A-AG------G---T--A--TAAT-AAAAC-GTATTTTTTT-AAGTC-GTTCATGTTCA------AATT-------AATTATGA-TGA-GCATAGATATT-GG-TCGG--TGA
gi|26 : AA----GA--------GA------TACCGGGAAAAA--------------T-----T---TCGA-A-TG-GCTG-ACAAAACTA-A-GAAACAGAC--------TGACGACCAA-A-TAA-------GTTTCAGG--AACAAA-TC----------------GTA
gi|27 : ccacaaataccccaaatGGC--------TGTCAACCAA---TTA-------GTTAT-CT--AATAGG-TC----------------GTAATA---ATGAAATCGTACCTT-GAACATACGTTG--GAAAG--CC-TATATAT----A---------T
gi|28 : a---TGGATC--TGTTGTATAA-AG-CAC-C-ATCAGTGT---AT-------AACGCATTCC-----TCCGAAGT----TGTGTTACTTTTCATTAAAA-
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-T-TATTCAGCAA---AGTTT-ATAATT-G-GTAC
gi|3 : ctTACCCGAATACT-CGACTATCGTTC----GGTTGTACCGA-TCATCCA-C-TA------AA---ATTTTTATACTC-GAGTACTCG-TT-A------AA-A--ATA---G---C--CATTTCAGTAAATTTT---AA--AG-AT--------GCA---T--CG----GT-GC---T--ATT--TT---GAG-T-AAAA-TCA----TGG-A-A-A-------GG--T--A--AAGTCAAACAAG-----TTTT-AATTC-ATTTATGTTCA------TATG-------CATCATT--TGA-ATTTGGGTGTT-GA-TCAG--TAAA-C-ATGCCTCTGA---AATACAC--TG---TATGTG--CATA-------TTTAAAGAATTTCATG----GTACAGAATCGATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGAACAAT----CATTTTGT-GAAGGGACAA-CAA------AAAC---------ATATT----AAATGCCAATA-------TT-CGTCGGAAT-CGTCAT---CAAGTTCTCTCA-A---AA-----AA------------TGAA----CA--------GA------TGTCT---AAAATC------AAATTAG-----C---TTGATA-TTTACTG-ACAAAACTT-A-GAAGCAGGC--------CGTCAACGAA-G-T-A-------GTTAT-TT--AATAAA-TC----------------GTAATA---ATGAAGTCGTACTTT-GAACATACATTG--TAACGCCTT-TACAAAT----A----------------------------------CTT------TT-TATGC-CGTAGTG-AATTTT--GATTGTTGC-CTGCACAGTA-TTTCATTAT-----CAAAC-G--AAA-----TTGACAGTTTA-TATATTTCACAG-TCACACGTCAACGATTCAG-GCG-AA-C-CT--T----G------GA-------T----AA-TTA--TGGATC--TA-TTTCTAA-AG-CAC-ACCTC-TTGT---ATAACCAACA-------CC-----TTCGAAGT----TGTGTAAATGTTCATAAAAT-CAAAGTTGCATGGCGCACTTC--A-ATAATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATGAAAATAAAT--cg
gi|30 : ttagggatgtcacccacACT-CGGCTATCGCTCCCGAGGTCGTACCGA-TCATCGA-C-TA------AAT--ATTTC-A
gi|31 : gtctaggg---T--CA----G--TG---T--TTT--GT---AAG-TGAAAA-CTA----TGT-A-ATG-------G---T--C--AAATCAAACCGG-----TTTT-AA
gi|4 : ATTTT--GATCATTGC-TTGTACAACT-TTTCCTTATATTCGTAAAA-GGAAAA-----ATGATCGTTTA-TCTACTTCTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-C------------------------T----AG-CTCCATGGGTC--TATTTTATAA-AG-CAC-CCATA-GTGT---AT-------A-------ACACATGTTCAAAGT----TGTGTTAATTTTTACG--AA-AATAATTGCACGGTGCTCTCA--G-G-AATTTTCT--GGGGGGAAAAAGCACACCCCATGTTTATTTCTCA-AAA-AGAAAGAGT----T---AT-----TAGAT--A-T-TGGAATGAATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATG-CAGCGTACTTTT-AAATATGAATAAACCCAAACCTG---TCTGTTGT----A-A--TACAGAACAC-T-GT------TCTAG---------------------CTATACATGT--AATTAA-TTCAACTGAACAGTTTTATAAACGGCGATCTAGAT
gi|4 : TAATTAATTCAACTG-AACAGTTTTATAAACGGCGATCTAGATAAACAGCCTTTCGGAATT-CACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTTCAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTC-ATTTTGGGT--TGGTGGTTTTTTTTTTTACTGAGTATTCAACTA---------TAA---CTCC---------ACTAAACTATCCGAATAAAAAACTGACATCTCTaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|5 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgTCAACGAGTAT---GGTACT-CGACTATCGCTC----GG-AGTAC-------TTGA-T-TA------AA---A-------------AATA--------A------CA-A--A-C---C---T--TTTTTCAGTAAAGTCT---AT--AA-ATTCT--A-ATCAAT-T--CA----GT-AT---T--TTT--GT---GAG-T-AAAA-TCA----TGA-A-A-A-------GG--T--A--AAGTCAATCC-GG----TTTT-AATTC-GTTC---------------T----------TCATT--TGC-GTGTGGATGTT-GG-TCAG--TAAA-C-ATGCCGCCGA---AATCCAC--TG---TTTGGA--CATA------CTTTAAAAGATCTTACG----ATGGAAACCTGGTGAAATG--------------------ATA-TGAA---AT-TGAA-CTG-----C----CATTCCGT-GGAATGACAA-CAA------ACACA-----T--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CACAAT---TGAATTCCCTCG-T---CA-----AAGTCTT-------CATG----CT--------GGTGAGTTTGCCACAAAAACAC------CAA--ATAA---C----AGATA-----CCG-A-AAA---T-A-AAAATGGGCTGGGTAGTTGCTGACAAA-ACTTAGAAATAGGCTGT-CG--ACCAAA-TTAGCTTTTTAGCAAATAGTAATC---ATGAAATCGTACATA-GGA-ATACAATG--GATGGACCT-TAT--GT----T---------TG-------------TT-------TCTT------TT-TATGC-CGTAGCG-GAGTTT--GAATGTAGC-TCGT---ACA-TTTCATTAT-----CAAAA-GA-AAA-----TTGACCGTTTA-aat
gi|6 : atgaataTGAAATG----TATCATGCATATATCTATAATGAAT-TATTGCAACTTGA----TATG-CATTCTGTTGAAGGAACAATCAACCACGTACACGTAGTCT--ATATTCGTCAGAATCTTATAATTTTCTCT-CGTCA-AATGTGTTGG---TGAATTCGC-CA-C---AA-----AAACACAGCCACAATAAAACCCCA--------GA------T-CCAGAAGAAAAC------ATA--TTGG---C---TGGATAGTTTGAAA-AAAAAACTTTACGAAATAGGC--------TGTCGACCAACA-ATA-------GTTTT-TTGCAGCAAAATA----------------GCAATA---ATGAAATCGTACATT-GAACATAC-TTGTTGAAGGATCTATATTAAT----ATGCTTTGTTTGT------------TT-------TCTT------TT-TTTGCTTGTGGTG-CATTTTTGGAT-GTTACTTTTTTTGACATTTTCAAT-T-----GGAGG-G--AAA-----TTGACTTTTTATTCTACTT---AGTTCACGAGTCAGTGATTCAGAGTGAAA-A-TAGGCTCCAG------A--------T----AA-TT---TGAGTC--T-TATTGTAATAGCCAC-TATTT-GTATAAAAC-------A-------CC-----TTCAAAGT----TGTG-TGATTTACTTGAAAA-AA---TCGCAC-GTACACTCC--A---AATT-----AGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AAT
gi|7 : CGAGTACT-CGACTATCGCTC----GGTCG--------CAT--A-C-TA------AA---TTTTTCATACTC-GAGTACTCG-TT-A------AA-A--ATG---G---C--CTTTTCAGTAAATTTT---AT--AA-ATTCT--A-AACA---TGTCA----GT-GT---T--TTT--GT---AAA-T-AAAA-CCA----TGTCA-A-G-------G---T--ACAAAGTAAAACC-AC----TTTT-AACTC-GTTTATGTTCA------AATG-------CATCATT--TGA-GTTTGGATTTT-GG-TCAG--TAATCCGATGCCTTCGA---AATCCAC--TGCC-T--GGT--CAT---------------GATCTCGTG----ATGGAAATCCGGTGAAATGAACGTA-----CATC-----ATT-TGAAA--AT-GAAA-TCGAAC--CAG--CATTCTTT-AGAGG-ACAA-CAA------ACATACAGTGT--ATATT----AAAGGCCGATG-------TT-CGTTAGAAT-CGCCAT---TAGATTCTCTCGTT---AA-----GACCTTCAATT---CAAA----CATTTTTGGTGAGTT---CACCACAAAAAGGCCAGATAAAA--ATATCTAC---TAGATA-TTTGCTGTTCAAAGCTT-A-AAAATTAGC--------TATCGACCAA-A-TTA-------GATTT-TA--AACAAA-TC----------------GTTATA---ATGAAATCGTACATT-GAACATACATTG--GAGAGACTT-TATA-----------------------------------------TTTG------TT-TAGGC-CGCAGAG-CAATTT--GA
gi|8 : gatgtcaaCGAGTACC-CGACTATTGCTC----GGTCATAC---------AA-C-TG------AA---GTTTTCATAGTC-AAATATTCG-TCCA------AACA--GTG---T---T--TTTCTT-GTAAAGTTG---AT--AA-ATT----A-AGT----------------GT---T--TTT--GT---GAG-T-AAAACTCG----TGT-A-A-A-------GG--T--C--ACGTCAAATTTG-----TTTA-AATCC-GTTCATGTTCATGATCAAATACATTGTAAATCATT--TGA-GTTTGGATGTC------------------TGACTCCAA---AATTCACAGTG---T--GG---CGTA------CTTTAAAAGATTTCATGTCGTATGAACAACCGGTGAAATG----TA-----TATG-----ATG-TGAAT-T-T-GAAC-TTG----------CATTATGT-GGAGGATCAA-CAA------ACTTGCA-T-C--ATATT----AAAGGCTGATA-------TC-CGTCAGAAT-CACCGT---TAAAATCTCTCG-
gi|9 : gatgtcaaTTGC---ATAAA--TT---GAAACAGGT--------TGTTTTCCAA----TA--------TTGT-CC--GCCAA---C----------------GTATT-----TTAAATAGT---TTCGTACATACATTG--GAAACACCT-TTTAAATTTATA---------TGT------------TT-------GCTTGTTTCATTGTATGC-C-TAGAGACATTTT--GATTGTTGT-TTGCTCAACA-TTGCATGAT-----CAAAA-T--AAAAGTTATTGAA----TA-TTTACTTCTCTG-TTACAAATCGGTGATTCGG-TTG-AA-AGTA--T----GCCGCACG--------T----GA-TGAA-TGGATTAATAATTATTAT-AG-CGCGCCCTC-GCGT---ATAATGCA-A-------CC-----CTCAAAGT----GAATTTGAATGTCATGAAAcctttgtcttcaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111111 1 1111 11111111111 3333333333333333 33333333333333333 2222222 11111111 11111111 1 222222 111111 11111111111 111111 5555555555 4444444444444444444 1111 1111111 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111111111 11111 2222222222222222 77777777777777777777777777777777777777 111111 22222 11 11111 77777777777777777777777777777777777777777 4444444444444444444444444444444 11111 111 222222 11111 333333 2222 1 5555555555555555 111 22 1111 77777777777777777777777777777777777777777 4444444444 22 44444444 11111 999999999999999999 222222222222222222 111111 11
lowQualScore : 0 0 2 5555 2 2 3 1 2 2 8888888888888 0 3 0000 2 2 3 3 888888 3 77 77777777777 888 44 3 6666666 7777777777777777 444 33 33 444 2 2 2 5555 2 2 2 00000000000000000 1 0000000 5 2 00000000 55555555 1 77 3 3 3 44 2 5 3 666 55 777777 888 222222 0 0 1 9999 1 99999999999 333333 4 4 4 4 3333333333 4 0 5 3333333333333333333 0000 4444444 4 4 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55 0 1 4 5 3 666 3 66666666 9999999999999 1 00000 4 9999999999999999 8888 0 5 66 1 4 2 66666666666666666666666666666666666666 444444 5 0 5 0 5 66 6 4 3 4 00000 4 55 00000 2 4 1 4 4 0 4 99999999999999999999999999999999999999999 0 66 55 1 2 4 4 5555555555555555555555555555555 11111 9999 5 555 444444 88 88888 6 6 3 0 44 66 111111 1111 2 0 3 2 1 1 8888888888888888 444 3 11 8 3 7777 6 8 11 8 44 99999999999999999999999999999999999999999 6 1 1 0 6 1 3333333333 1 00 6 22222222 44444 6 0 33 666666666666666666 1 1 777777777777777777 44 1 3 0 0 0 3 22 222222 1 88 0
lowQualScore : . . . .... . . . . . . ............. . . .... . . . . ...... . .. ........... ... .. . ....... ................ ... .. .. ... . . . .... . . . ................. . ....... . . ........ ........ . .. . . . .. . . . ... .. ...... ... ...... . . . .... . ........... ...... . . . . .......... . . . ................... .... ....... . . . ..... .......................................................................................... .. . . . . . ... . ........ ............. . ..... . ................ .... . . .. . . . ...................................... ...... . . . . . .. . . . . ..... . .. ..... . . . . . . . ......................................... . .. .. . . . . ............................... ..... .... . ... ...... .. ..... . . . . .. .. ...... .... . . . . . . ................ ... . .. . . .... . . .. . .. ......................................... . . . . . . .......... . .. . ........ ..... . . .. .................. . . .................. .. . . . . . . .. ...... . .. .
lowQualScore : 7 1 7 7777 6 7 3 5 7 7 2222222222222 7 0 9999 4 1 1 1 888888 1 33 44444444444 555 22 1 7777777 7777777777777777 777 77 77 777 7 7 7 7777 7 7 7 22222222222222222 1 7777777 3 9 22222222 22222222 4 33 1 1 1 22 8 6 6 444 55 000000 888 888888 8 7 1 4444 6 00000000000 777777 4 4 4 4 8888888888 4 2 0 5555555555555555555 6666 4444444 4 4 7 22222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 8 0 4 7 6 666 1 11111111 2222222222222 0 22222 4 4444444444444444 9999 2 0 11 8 4 0 99999999999999999999999999999999999999 444444 0 4 0 2 0 11 2 4 9 4 00000 0 00 00000 3 0 0 4 4 7 4 88888888888888888888888888888888888888888 1 11 77 7 6 4 4 9999999999999999999999999999999 11111 4444 7 777 999999 00 33333 7 7 2 8 22 22 555555 2222 5 0 2 5 0 0 5555555555555555 000 2 00 0 2 8888 4 0 44 0 00 22222222222222222222222222222222222222222 7 4 0 7 7 0 7777777777 0 77 5 88888888 55555 5 8 22 222222222222222222 0 0 222222222222222222 66 4 2 8 8 8 2 44 666666 0 66 8
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---AT--AA-ATTCT--A-AACA---T--CA----G--GT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
Reference ( family-1442 ) : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---AT--AA-ATTCT--A-AACA---T--CA----G--GT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
gi|1 : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAACGAATCATCGAGC-TA------GA---AATTT-ATACTCCGAGTACTCG-AT-A------AA-AC-ATT---C---A--CTTTCCAGTAAATTCT---AA--AG-ATACA--C-CACA---T--CA----G--GT---CAATTT--TT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--AG-AAATGAAACCTG-----TCTT-AATTC-GTTCATGTCCA------TATA-------AATCAAT---GA-GAC-GGATGTTCGG-CCAG--TAAAAC-AT--CTCTGATGAGAGAGAC--TG---T--GGAGGCATA------CATTAAACGATCTCATG----TTGGAAAACCAATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGA----C----CAATCTGT-GAAGGGACAA-CAC------ACACATAATATTTATATC----AAGTGCCAATA-------TT-CGTCAGATT-CAGCAT---CAAATTCTCTCA-----AA-----AA------------CGAA----CA--------GA------TTCCGAAACAAAAC------ACA--AT-----CC--TTGACT-TTTACTG-ACAAAACTT-A-GAAATGGGC--------TGTCAACCAA---TTA-------GTTGT-TT--AATAAA-AT----------------ATAATATTAATGAAATCGTACATT-GAACATACATTT--GAAAGCCTT-TATAAAT----A---------T--------------------------T------TT-TATGC-TGTGGTG-AATTTT--GATTGCTGC-CGGTACAACA-TTTCATCAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCCG-TCACAAGGCAATGATTCAG-GCG-AACA-TA--C----G------G--------T----AA-TTG--TGGATC--TAATTTTTAA-AG-CAC-CCCTC-GTGT---AT-------A-------CC-----GTTGGAAT----TGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACACTCA--A-G-AAACTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAAT--ATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTGA-GGTACTTTTCATGCTAGCCCAC-T---------------ACCAAGGCCTG---TCTGTCATGATTA-AAATAT---GCTTAT-GTAATT-ATCTAAACCAGAGACCTATATACAACATTATATATGT--CCTTGA-TTCAATTTAACAAATTTCTAAAAGGCTATCCAGAT
gi|1 : TAATTGAATTAGATTGCAGAAGTA----GA----GCTC-AGATAAACAACCTTTC--------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATGCACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTGTA-T------GT--CGCT--CTCCCCTTTCTACCGAGTATTCGACTATCGCCCGGCTAAAGCCTCCGAATACTCGACTTAGCTATCTGAGT-ACAAATT-ACATCCCTtgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgataattgaattagattgcagaagtagagctcagataaacaacctttcaccagttaacttcgctattcgtatgcgccgaggtacatgcacatgtaatgtatgactaatgactgtgaaacacttgtacactgtatgtcgctctcccctttctaccgagtattcgactatcgcccggctaaagcctccgaatactcgacttagctatctgagtacaaattacatccct
gi|10 : gtcaacgagtattcgaatactcgactatcgctcggtcgtaacgaatcatcgagctagaaatttatactccgagtactcgataaaacattcactttccagtaaattctaaagatacaccacatcaggtcaatttttgagtaaaatcatgtaaagtagaaatgaaacctgtcttaattcgttcatgtccatataaatcaatgagacggatgttcggccagtaaaacatctctgatgagagagactgtggaggcatacattaaacgatctcatgttggaaaaccaatgaaatatacattatatgaattatgaaattgaccaatctgtgaagggacaacacacacataatatttatatcaagtgccaatattcgtcagattcagcatcaaattctctcaaaaacgaacagattccgaaacaaaacacaatccttgacttttactgacaaaacttagaaatgggctgtcaaccaattagttgtttaataaaatataatattaatgaaatcgtacattgaacatacatttgaaagcctttataaatatttttatgctgtggtgaattttgattgctgccggtacaacatttcatcatcaaaagaaattgaccgtttatctacttctccgtcacaaggcaatgattcaggcgaacatacggtaattgtggatctaatttttaaagcacccctcgtgtataccgttggaattgtggtaattttcatgaaaagaatagttgcacggcacactcaagaaacttctcagaaaaagaaaaacgtgtcccatgtttagttcacatgaacagaaacaatgaaataagatgtaaataaatatattggaatgcatttctgcacgtcttgtgttggatattgaggtacttttcatgctagcccactaccaaggcctgtctgtcatgattaaaatatgcttatgtaattatctaaaccagagacctatatacaacattatatatgtccttgattcaatttaacaaatttctaaaaggctatccagattgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgaGGCCGATA-------TT-CGTCAGAAT-CACC-------AATTCTCTCG-T---CA-----AA------------TCTT----CA--------AA------TA----AAAAAAAA------AAA--AT-----T---TGG
gi|10 : ---AA-----AA------------T-AA----CA--------GA------TACTGCAATAAAAT------A-----T-----CGGTTGGATA-GTTGCTG-ACAAAACTT-tgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|10 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccTTG--GAAAGACCT-TATAAAT----G---------TGT------------CTGCTTGATTCTT------TT-CATGC-CATAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCCTTATATTCATAAAA-GGAAAA-----ATGATTGTGTA-TCTACTTTTCAG-TCACGAGTCAGTGATTCAG-GTG-GA-gatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|11 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttGGGTACT-CGACTATCGCTC----GGTCGCATCGA-TCATCGA-C-TA------AA---TTTTTCATAGTG-GAGTACTTG-TT-A------AA-A--ATA---AAAGT--ATTTCCAGTAAAGTTT---AT--AA--TTCT--A-AACA---C--TT----GCTGT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------AGGTT--A--AAGTTAGACC-G-----GCTTGAATGC-ATTCATGTTCA------AATA-------AATGATT--CAA-GTTTGGATGTT-GG-TCAG--T-AAAC-GTGCCTCTAA---AATCCAC--TGTT-T--AGG--CATA------CTTTA-----------------------------GAAATG----T-------ATT-----ACA-TGTGTCTAT-AAAA-TTAAG---CTAG-CATTCTGT-GGA
gi|12 : atgtcaatGCGCACTCC--AAG-AATTTTT----AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGATAAA---------------GAATACATTTCT----GTCTTATACTA---ATTGAATATACCTT-CATGCTATCTTTC-TTT------T---TAAACCCAAGCCTG---TCTGTTGTG-TCATAGCTAT---ACATGT-GTAATT-A---ATGCC-----------------ACTGC-----T--AGT---------CTGTACATATTTGTAAACGGTTATCCTGAT
gi|12 : ataTAAACGGTTATCCTGA-TTTCACCAGTGA-------------TGCGCGCTGAAGTAT------------------GATTGATGACTTTGAAACACTAGTACACTGTC-A------GT--ttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|13 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgAGTACT-CGACTATCGCCC----GGTCGTATCGA-TCATCGA-C-TA------AATTTATTTT-ATAGTC-GAGTACTCG-TT-ACATGTAAA-A--ATAGTCC---T--TTTTTCAGTAAAGTCA---AT--AC-ATTCT--A-AACACTTT--GAAGTGG--GT---T--TTTTGGT---GAG-T-AAAA-TCA----TGT-A-A-A-------G--------------------G-----TTTT-AATCC-GTTCATGTTCA------TATA-------AATCATT--TGA-GTTTGGATGTT-AG-TCAG--T-AAAC-ATGCCTCAAA---AATCCAC--TGTTTT--GGA--CATACATGTCCTTTAAAAGATATCTTG----ATGGAAAtccc
gi|14 : tcaactGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTACCGA-TCATTGA-C-TA------AA---TTTTT-ATAGTC-CAGTATTCA-TT-A------AA-A--ATA---CCC-T--TTTTACAGTAAAGTTT---AT--AA-ATTTT--A-AACAAT-T--CA----GT-GT---T--TAT--AT---GAG-T-AAAA-CCA----TGT-A-A-A-------GG--C--A--AAGTCAAAAC-G-----TTTT-AATTC-ATTCATGCTCA------AATA-------AATTATT--TTA-GTTTGGATATT-AG-TCAG--T-AAAC-ATGCTTACAA---AATCCAC--AG---T--g
gi|15 : cagtgatAGTACT-CAACTATCGCTC----GGT-G-ACCGA-TCATTGA-CTTA------AA---TTTTT-ATAGCC---CTATTCGATT-A------AA-ACTACC---C---T--TTTTACAGTAAAGTTTTGAGTTGAA-ATTTTTGA-AAC-------CA----A--TTTCAT--TTT--GTTACGAGTT-AACA-TTATATGTGT-A-A-ACAGG---A---C--A--AAGTCAAAAC-G-----TTTTAAATTC-ATTCATGCTCT------AATAAT-----AATTATT--TTAGGTTTGGATATT-AG-TCAGTATAAAAC-ATGCTTACAA---AATCCAtccag
gi|16 : GTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-C-TATTCAGCAA---AGTTT-ATATTT-----------TT-A------AA-C--ATT---T---CAGTTTGTGAGTAAA-T------T--AA-TTTCT--A-AACACT-T--CA----G--TT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-AG------G---T--G--AAGTCAAACC-GC----TTTT-AATTC-TTTGATG-TCA------AATA-------AAT--TTACTGT-GTTTGGATTGT-GG-TCGG--T-TAAC-ATGCCTCTGA---ATGCCAC--TGTTTT--GGA--CATA------CTTTAGAA
gi|17 : TCTAGTACT-CGACTATCGCTC----ATTCGTACCGA-TCATCGA-C-T--------A---ATTTT-TT--TC----TA---G-TT-A------GG-A--ACT---C---T--TTTTGCAGTAAAGTTT---AT--GA-ATTTT--A-AGCA---T--TT----GA-AT---G--GTT--AT---GTG-T-AAAA-CCA----CGT-ATA-G-------G---T--A--ACGTCAAA--------------A-----GTTCATGTTC-----------------------TT--TGA-GTTTGGGTGTT-CG-TCAA--T-AAGC-ATGCCTTCGA---AAACCAA--TA---T--GGA--CATA------CTTTAAAATATCTTTTG----ATatatatt
gi|18 : tcaAACCCAAGTGTGCCATCTGTT----TCA-AGCTA----ACACGTGGTACTT-ATATTCACTGA---------------GTTA-A-ATCT--AAACAG-CTAAATTGAA
gi|18 : TTGAAATACTTCTTCTCTGCCCA------GT----AT--CTCCCTTCTTAACCGA-TACTAGACTATAGATCGACTAAAGCCTCAGAAAACTCGG-TAAGCTATCCGAGT-AAAAGCTGAC-TCCCTacttcgctttcttatggtgcttgaaatacttcttctctgcccagtatctcccttcttaaccgatactagactatagatcgactaaagcctcagaaaactcggtaagctatccgagtaaaagctgactcccta
gi|19 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcTACTCGAATATTGTGAATATCGCTC----GGTTATACTGA-T-----A-C-----------------TC-ATATTT-GCTTACT-G-TT-A------CA-A--TTA---T---T--TTTTTTAG----GTTTA--AT--AATATTTT--GTAGTA------CA--------T---T--CTT--GT-----A-T-AA-----A----TGA-A-G-G-------G---TTCA--AAGTC-AACA-G-----TTTT-AATTCTGTTCATGTTCT------AAAA-------GATCATT--CGC-ATTTGGGTTTT-GGCTCGT--TAAAa
gi|2 : atATCTCATG----ATGGAAAATCGGTCGAATA----TA-----CATT-----ACA-TGAAT-TAT-GAAA-TTAA----G----CATTCTGT-GGAGGGACAA-CAA------CCA-----TGT--ATATT----AAAGGCCAATA-------TT-CGTCAGAAT-CACCATATTTAAATTCTCTCA-TCTAAATCTTCAATT----------CGAAATAACA--------GA------TACAGAAAAAAAA--------------------------ATA-TCCGCTG-G--AAACTT-A-GAAATAGGT--------TGAAAACCAA-A-TTA-------GTTTT-TG--AACAAA-TT----------------GCAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGTTTGCTTGACAAGTT-------TCTT------TT-T-TGC-CATAGTG-CATTTT--GAGTGTTGC-TTGTACTACG-TTTCATTAT-----CAAAG-G--AAA-----TTGACTGTTTA-TCTACTACTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-T---T----G------GCTTCTGAAT----AATTT---TGTGTC--TATTGTGTTC-AG-CAC-CCATC-ATGT---ATCAC----A-------CC-----TTCAAAGA----TGTGTTGA--TTCATGAAAA-A----TGGCACGGCGCACTCC--ATG-AATTTTCTCAGAAAAAAAA-----TGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGA-A-TGGAATGCATTTCT----GTCTCACATTGGATATTGA-TGTATTTTTCATGCCAGCGTTC-TTGAAA--ATGAATTAACCCAAGCCTG---TCTGTTGTGTTCA-AGCTAT---ACGCAT-GTAATTGATTTA-ACCGG---------------A----ACA-----AATTAAGTT---CTAAACAGtcttcgtct
gi|2 : TAATTGATTTAACCGGAACAAATT----AA----GTTC----TAAACAG-CTATCGG---------AG-----TTCCCTATGTGCGCGCGCTGAGGTATAT------------------TTGATGACTTTGAAACACTCATACCCTGTC-A------GTCCCCCC--CCCCCCTTTTAACAGCACACTCGACTATCGCTCAATT-AAGCCACCAAGTACTCAACTAAGCTATCCGAGT--AAAATTGACATCCCTctatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|20 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgCTATACATGTGTAATAAAATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATa
gi|20 : tgttctagCTTTGAGATACTTTTACCATGTC-A------GTT-CGTT--TTTT--TTTTTACCGAGTACTCAACTATCGCTTGACTAAAGTCTCCGAGTA--------------CCGAGT--AAAATTGACACCCTTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|21 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgC-TGGTGCAATG-TTTCAATAC-----CAAAGTA--AAA-----TTG-CCGTTTA-TCT---TCTCTG-TCACGAGTTAGTTATTCAG-TTG-GA-A-CT--C----G------G--------TCCCCAA-------GGAT--------------AG-AAC---------GC---AC-------A-------CC-----TTCAAAGTAAGGTGGATTAATTTCCTTGGAAA-AAT-GTT---CGGCGCA-TCCTTT-T-AATTTTCTTAGAAAAACAA---CATGCTCTATGTTTAaag
gi|22 : TACTCGAATATT--GAATATCGCTC----GGTTATACTGA-T-----A-C-----------------TC-ATATTT-GATTACTTG-TT-A------AC-A--ATT---T---T--TTTTTT--T--AGTTT--------A-AT-------AATA---T--TA--------T---T--TTT--------AG-T--ACA-TTG----TAT-A-A-ACTTAAGGG---T--A--AAGTCAAACCAG-----TTTT-AATTC-GTTCAc
gi|23 : -----CATA-----ATA-TGAAT-TAT-AAAA-TTTG----CATAGCATTCTA--AGATGGAC---CAA------A-----AATGT--ATATT----AAAGACCGATA-------TTCCGTTAGAAT-CATT-TAA-TAAATTATCTCGTT---AA-----AA------------
gi|24 : ATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTTATTCTCCG-TCATAAATCAATG-------GCT-AA-T-TA--T--------------------C----AA-TT---TG-ATC--TATTGTGTAA-AC-CAC-----------------------A-------CC-----TTCGAAGT----TGTGTTAATTTTTATGAatgtgaattcaaata
gi|25 : CA---C--TA----T--GC---T--TTT--GT---GAG-T-AAAA-TCA----TAT-A-A-AG------G---T--A--TAAT-AAAAC-GTATTTTTTT-AAGTC-GTTCATGTTCA------AATT-------AATTATGA-TGA-GCATAGATATT-GG-TCGG--TGA
gi|26 : AA----GA--------GA------TACCGGGAAAAA--------------T-----T---TCGA-A-TG-GCTG-ACAAAACTA-A-GAAACAGAC--------TGACGACCAA-A-TAA-------GTTTCAGG--AACAAA-TC----------------GTA
gi|27 : ccacaaataccccaaatGGC--------TGTCAACCAA---TTA-------GTTAT-CT--AATAGG-TC----------------GTAATA---ATGAAATCGTACCTT-GAACATACGTTG--GAAAG--CC-TATATAT----A---------T
gi|28 : a---TGGATC--TGTTGTATAA-AG-CAC-C-ATCAGTGT---AT-------AACGCATTCC-----TCCGAAGT----TGTGTTACTTTTCATTAAAA-
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-T-TATTCAGCAA---AGTTT-ATAATT-G-GTAC
gi|3 : ctTACCCGAATACT-CGACTATCGTTC----GGTTGTACCGA-TCATCCA-C-TA------AA---ATTTTTATACTC-GAGTACTCG-TT-A------AA-A--ATA---G---C--CATTTCAGTAAATTTT---AA--AG-AT--------GCA---T--CG----GT-GC---T--ATT--TT---GAG-T-AAAA-TCA----TGG-A-A-A-------GG--T--A--AAGTCAAACAAG-----TTTT-AATTC-ATTTATGTTCA------TATG-------CATCATT--TGA-ATTTGGGTGTT-GA-TCAG--TAAA-C-ATGCCTCTGA---AATACAC--TG---TATGTG--CATA-------TTTAAAGAATTTCATG----GTACAGAATCGATGAAATA----TA-----CATT-----ATA-TGAAT-TAT-GAAA-TTGAACAAT----CATTTTGT-GAAGGGACAA-CAA------AAAC---------ATATT----AAATGCCAATA-------TT-CGTCGGAAT-CGTCAT---CAAGTTCTCTCA-A---AA-----AA------------TGAA----CA--------GA------TGTCT---AAAATC------AAATTAG-----C---TTGATA-TTTACTG-ACAAAACTT-A-GAAGCAGGC--------CGTCAACGAA-G-T-A-------GTTAT-TT--AATAAA-TC----------------GTAATA---ATGAAGTCGTACTTT-GAACATACATTG--TAACGCCTT-TACAAAT----A----------------------------------CTT------TT-TATGC-CGTAGTG-AATTTT--GATTGTTGC-CTGCACAGTA-TTTCATTAT-----CAAAC-G--AAA-----TTGACAGTTTA-TATATTTCACAG-TCACACGTCAACGATTCAG-GCG-AA-C-CT--T----G------GA-------T----AA-TTA--TGGATC--TA-TTTCTAA-AG-CAC-ACCTC-TTGT---ATAACCAACA-------CC-----TTCGAAGT----TGTGTAAATGTTCATAAAAT-CAAAGTTGCATGGCGCACTTC--A-ATAATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATGAAAATAAAT--cg
gi|30 : ttagggatgtcacccacACT-CGGCTATCGCTCCCGAGGTCGTACCGA-TCATCGA-C-TA------AAT--ATTTC-A
gi|31 : gtctaggg---T--CA----G--TG---T--TTT--GT---AAG-TGAAAA-CTA----TGT-A-ATG-------G---T--C--AAATCAAACCGG-----TTTT-AA
gi|4 : ATTTT--GATCATTGC-TTGTACAACT-TTTCCTTATATTCGTAAAA-GGAAAA-----ATGATCGTTTA-TCTACTTCTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-C------------------------T----AG-CTCCATGGGTC--TATTTTATAA-AG-CAC-CCATA-GTGT---AT-------A-------ACACATGTTCAAAGT----TGTGTTAATTTTTACG--AA-AATAATTGCACGGTGCTCTCA--G-G-AATTTTCT--GGGGGGAAAAAGCACACCCCATGTTTATTTCTCA-AAA-AGAAAGAGT----T---AT-----TAGAT--A-T-TGGAATGAATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATG-CAGCGTACTTTT-AAATATGAATAAACCCAAACCTG---TCTGTTGT----A-A--TACAGAACAC-T-GT------TCTAG---------------------CTATACATGT--AATTAA-TTCAACTGAACAGTTTTATAAACGGCGATCTAGAT
gi|4 : TAATTAATTCAACTG-AACAGTTTTATAAACGGCGATCTAGATAAACAGCCTTTCGGAATT-CACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTTCAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTC-ATTTTGGGT--TGGTGGTTTTTTTTTTTACTGAGTATTCAACTA---------TAA---CTCC---------ACTAAACTATCCGAATAAAAAACTGACATCTCTaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|5 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgTCAACGAGTAT---GGTACT-CGACTATCGCTC----GG-AGTAC-------TTGA-T-TA------AA---A-------------AATA--------A------CA-A--A-C---C---T--TTTTTCAGTAAAGTCT---AT--AA-ATTCT--A-ATCAAT-T--CA----GT-AT---T--TTT--GT---GAG-T-AAAA-TCA----TGA-A-A-A-------GG--T--A--AAGTCAATCC-GG----TTTT-AATTC-GTTC---------------T----------TCATT--TGC-GTGTGGATGTT-GG-TCAG--TAAA-C-ATGCCGCCGA---AATCCAC--TG---TTTGGA--CATA------CTTTAAAAGATCTTACG----ATGGAAACCTGGTGAAATG--------------------ATA-TGAA---AT-TGAA-CTG-----C----CATTCCGT-GGAATGACAA-CAA------ACACA-----T--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CACAAT---TGAATTCCCTCG-T---CA-----AAGTCTT-------CATG----CT--------GGTGAGTTTGCCACAAAAACAC------CAA--ATAA---C----AGATA-----CCG-A-AAA---T-A-AAAATGGGCTGGGTAGTTGCTGACAAA-ACTTAGAAATAGGCTGT-CG--ACCAAA-TTAGCTTTTTAGCAAATAGTAATC---ATGAAATCGTACATA-GGA-ATACAATG--GATGGACCT-TAT--GT----T---------TG-------------TT-------TCTT------TT-TATGC-CGTAGCG-GAGTTT--GAATGTAGC-TCGT---ACA-TTTCATTAT-----CAAAA-GA-AAA-----TTGACCGTTTA-aat
gi|6 : atgaataTGAAATG----TATCATGCATATATCTATAATGAAT-TATTGCAACTTGA----TATG-CATTCTGTTGAAGGAACAATCAACCACGTACACGTAGTCT--ATATTCGTCAGAATCTTATAATTTTCTCT-CGTCA-AATGTGTTGG---TGAATTCGC-CA-C---AA-----AAACACAGCCACAATAAAACCCCA--------GA------T-CCAGAAGAAAAC------ATA--TTGG---C---TGGATAGTTTGAAA-AAAAAACTTTACGAAATAGGC--------TGTCGACCAACA-ATA-------GTTTT-TTGCAGCAAAATA----------------GCAATA---ATGAAATCGTACATT-GAACATAC-TTGTTGAAGGATCTATATTAAT----ATGCTTTGTTTGT------------TT-------TCTT------TT-TTTGCTTGTGGTG-CATTTTTGGAT-GTTACTTTTTTTGACATTTTCAAT-T-----GGAGG-G--AAA-----TTGACTTTTTATTCTACTT---AGTTCACGAGTCAGTGATTCAGAGTGAAA-A-TAGGCTCCAG------A--------T----AA-TT---TGAGTC--T-TATTGTAATAGCCAC-TATTT-GTATAAAAC-------A-------CC-----TTCAAAGT----TGTG-TGATTTACTTGAAAA-AA---TCGCAC-GTACACTCC--A---AATT-----AGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AAT
gi|7 : CGAGTACT-CGACTATCGCTC----GGTCG--------CAT--A-C-TA------AA---TTTTTCATACTC-GAGTACTCG-TT-A------AA-A--ATG---G---C--CTTTTCAGTAAATTTT---AT--AA-ATTCT--A-AACA---TGTCA----GT-GT---T--TTT--GT---AAA-T-AAAA-CCA----TGTCA-A-G-------G---T--ACAAAGTAAAACC-AC----TTTT-AACTC-GTTTATGTTCA------AATG-------CATCATT--TGA-GTTTGGATTTT-GG-TCAG--TAATCCGATGCCTTCGA---AATCCAC--TGCC-T--GGT--CAT---------------GATCTCGTG----ATGGAAATCCGGTGAAATGAACGTA-----CATC-----ATT-TGAAA--AT-GAAA-TCGAAC--CAG--CATTCTTT-AGAGG-ACAA-CAA------ACATACAGTGT--ATATT----AAAGGCCGATG-------TT-CGTTAGAAT-CGCCAT---TAGATTCTCTCGTT---AA-----GACCTTCAATT---CAAA----CATTTTTGGTGAGTT---CACCACAAAAAGGCCAGATAAAA--ATATCTAC---TAGATA-TTTGCTGTTCAAAGCTT-A-AAAATTAGC--------TATCGACCAA-A-TTA-------GATTT-TA--AACAAA-TC----------------GTTATA---ATGAAATCGTACATT-GAACATACATTG--GAGAGACTT-TATA-----------------------------------------TTTG------TT-TAGGC-CGCAGAG-CAATTT--GA
gi|8 : gatgtcaaCGAGTACC-CGACTATTGCTC----GGTCATAC---------AA-C-TG------AA---GTTTTCATAGTC-AAATATTCG-TCCA------AACA--GTG---T---T--TTTCTT-GTAAAGTTG---AT--AA-ATT----A-AGT----------------GT---T--TTT--GT---GAG-T-AAAACTCG----TGT-A-A-A-------GG--T--C--ACGTCAAATTTG-----TTTA-AATCC-GTTCATGTTCATGATCAAATACATTGTAAATCATT--TGA-GTTTGGATGTC------------------TGACTCCAA---AATTCACAGTG---T--GG---CGTA------CTTTAAAAGATTTCATGTCGTATGAACAACCGGTGAAATG----TA-----TATG-----ATG-TGAAT-T-T-GAAC-TTG----------CATTATGT-GGAGGATCAA-CAA------ACTTGCA-T-C--ATATT----AAAGGCTGATA-------TC-CGTCAGAAT-CACCGT---TAAAATCTCTCG-
gi|9 : gatgtcaaTTGC---ATAAA--TT---GAAACAGGT--------TGTTTTCCAA----TA--------TTGT-CC--GCCAA---C----------------GTATT-----TTAAATAGT---TTCGTACATACATTG--GAAACACCT-TTTAAATTTATA---------TGT------------TT-------GCTTGTTTCATTGTATGC-C-TAGAGACATTTT--GATTGTTGT-TTGCTCAACA-TTGCATGAT-----CAAAA-T--AAAAGTTATTGAA----TA-TTTACTTCTCTG-TTACAAATCGGTGATTCGG-TTG-AA-AGTA--T----GCCGCACG--------T----GA-TGAA-TGGATTAATAATTATTAT-AG-CGCGCCCTC-GCGT---ATAATGCA-A-------CC-----CTCAAAGT----GAATTTGAATGTCATGAAAcctttgtcttcaat
blockSeqs : G CCGA C . C C . T TTCAGCAAAG C G GAG C T A C CATGTA C CT AAAAGT TGA TG T TTTTGA CTTTGAAGTGGG TCA . TG TAC T G C TATG C T T CTTAAGGGTA C GTATTT G T ATGATCAA ACATTGTA G AC G . C TA A A G . AG TTTT G CATGTC T TCGT A TATCATG ATATCT A C T C AGCTAG T T CCACGTACACGTAGTCT CGTC ATTTTCT C G ATATT TTAAGACCTTCAATTCAAACATTTTTGGTGAGTTCACCACAAAAAGGCCAGATAAAAATATCTACTA GT T T C A TAC A TGGGTAGT ACTTAGAAATAG T TTGC A AGCTTTTTAGCAAATA A C TT A A A ATGTTTGCTTGACAAGTT GTTTCA G T A TG C T A T ATTCA T GA AGTTA T T A T A A AGTATGCCGCACGTGATGAA AA AT G G T C CATCAGTGTATAACGCATT ACATG AAGG . AAG TTTT TC GAGCA C C G AA AA AGAA . G A T C T T TTTTAAATATGAATA CCA G GT T G CAGA G G AA G TA CACTGAGTTAAATCTAAACAG A T G G A TATAAACGGC T TA T TGATTTC TGAAC C GT ATGTTCAGTGTTG G A ATTTTGGGTTGGTGG CT A A G AA CTCAAC A AA
blockSeqs : . . C . C C . . TTCAGCAAAG T G GAG C C . . . . . AGTCCT A . . TTTGT ATTCAGTG . . . . . . . . . . . CAGGACA A GC A . AA AAT C A . . . . A A . . . TTTT A . T . A AACGTA T . . . . GCATAG . . ACATACAGTGT . . . . TAA CAAAAACACAGCCACAATAAAACCCCAGATCCAGAAGAAAACATATTGGCTG G T . C A A A . CAATA T AGG . . A . . A . A ATGCTTTGTTTGTTT . . . . . T . A . ATTCG . GA . T . A . . . ATTGGCTTCTGAATAATTT . AT G G . . ACCTCTTGTATAACCAACA . . . TAA AAG TT AAACG C C A GA AA AT . G . T C G T TTGAAAATGAATT . G G . G T G . AC . TT GCTATACATGTAATTAA C G C . T AA A . C GGAATTC TGA A TC AT C T AGTCCCCCC CC A G A GT CTCGG A A
blockSeqs : . . C . C T . . AATTTAT C G CAG T C . . . . . ACCCT . . . TCTA ATTCAGTA . . . . . . . . . . . AGGTTA A AG . . AT A T . . . . . G A . . . TTT A . A . C TA T . . . . AACAAT . . ACTTGCATC . . . . AT TCAAAGTCTTCATGCTGGTGAGTTTGCCACAAAAACACCAAATAACA T T . C A A A . ATTA A TG . . A . . C . T GTGTCTGCTTGAT . . . . . T . G . . . A . C . T . . . ATAGGCTCCAGATAATT . GT G A . . GCCCTCGCGTATAATGCAA . . . TG ATG TC AAGCA C G G GA . . . . . . . G A TTTTTA . G . . G T A . AA . TC ACCGGAACAAATTAAG C A A . GG . . . . A C AGTTCGTT TT T G G GT AC A .
blockSeqs : . . C . C T . . AATAT C G GCT T C . . . . . TTCAG . . . TCTA TGTCAGTG . . . . . . . . . . . GTTCA C AG . . AA A T . . . . . A A . . . TAT A . A . T TA A . . . . AACCAG . . CCATGT . . . . AT TCTAAATCTTCAATTCGAAATAACAGATACAGAAAAAAAA T T . A A A G . ATAA A CT . . C . . A . A TTATATGTTT . . . . . C . A . . . . . C . C . . . ACTCGGTCCCCAA . AT T C . . CCATCATGTATCACA . . . . AAT T CA . . . . . . . . . . . . . . . . TGCCACTGCTAGT . G T C CAGTAT . T . . . . . .
blockSeqs : . . T . A C . . AATT . T GAT C T . . . . . CCT . . . TTTA CTTGCTG . . . . . . . . . . . GTACA C GG . . TA A C . . . . . A A . . . TTT G . A . A TA T . . . . ATATG . . AAATGT . . . . GG AAAAATGAACAGATGTCTAAAATCAAATTAGCTT T C . C A A A . ATTA G TT . . A . . A . A TTGTT . . . . . T . A . . . . . A . A . . . CCTTGGATAATTA . AA T A . . TATTTGTATAAAACA . . . . GG . . . . . G C
blockSeqs : . . C . C C . . AATT . T GAG C C . . . . . TCT . . . TCTA CTTCAGT . . . . . . . . . . . GGCA C GG . . AA A T . . . . . A G . . . CCT A . G . . T C . . . . AG . . ACACAT . . . . AT TCAAATCTTCAAATAAAAAAAAAAAAATTTG T A . T G A T . TTA T CG . . A . . A . A A . . . . . T . T . . . . . C . A . . . ACTAGCTCCA . A T G . . CCATAGTGTATA . . . A . .
blockSeqs : . . T . A C . . AATT . T GAG C C . . . . . ATT . . . TTTA TTTGAA . . . . . . . . . . . GGTG A AC . . TA A C . . . . . . C . . . T T . A . . G . . . . C . . AAAC . . . . GT . T . . . . A . GTA T TA . . . . . A . . . . . . . . . . T . . . . . C . A . . . TTATCAATT . T T T . . GCACA . .
blockSeqs : . . T . C C . . AAAT . A AAA C C . . . . . TTT . . . TCTA TCGGTG . . . . . . . . . . . GGTA C TG . . AA T C . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . TA G CC . . . . . . . . . . . . . . T . T . . . . . . . . . A . .
blockSeqs : . . T . C C . . AATT . C GG C . . . . . . AGC . . . TCTA CTATG . . . . . . . . . . . GGTA C G . . AT G C . . . . . . . . . . T . . . . . .
blockSeqs : . . C . C T . . AAGT . C AA T . . . . . . CCT . . . TA TCAGT . . . . . . . . . . . GGTA C G . . AA G C . . . . . . . . .
blockSeqs : . . C . . . . . AAT . G C . . . . . . . GGC . . . . CAAT . . . . . . . . . . . GGTC C G . . . . . . . . . . .
blockSeqs : . . . . . . . . AAA . . . . . . . . . . GTT . . . . TTA . . . . . . . . . . . GTA T G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . CA . . . . . . . . . . . GTC . G . .
blockSeqs : . . . . . . . . . . G . . . . . . . . . . . G . . .
blockSeqCons : GAG* ** CTTCAGTG******** ** *** TTT*** A** ACAG****** ACACGT************* ATTA********* A*** ATTGCTTGT***************************** CCATCTGTATAACACA*************** ATN*** ** G* CGCCGNAATTAATCAG************************* AGTNCCT*********** G***** A*
originalCons : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---AT--AA-ATTCT--A-AACA---T--CA----G--GT---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TG---T--GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGA----C----CATTCTGT-GGAGGGACAA-CAA------ACACGCAGTGT--ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A---------TGT------------TT-------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CAC-CCNTC-GTGT---AT-------A-------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCC--A-G-AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAAAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTANACCGG---------------ACTATACATGT--AATTAA-TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A------GT--CGNT--CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTACTCGACTAAGCTATCCGAGT-AAAAATTGACATCCCT
finalCons : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTCGAG-TACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---AT--AA-ATTCT--A-AACACTTCAGTG--------T---T--TTT--GT---GAG-T-AAAA-TCA----TGT-A-A-A-------G---T--A--AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCAC--TGTTT---GGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAATG----TA-----CATN-----ATA-TGAAT-TAT-GAAA-TTGACAG------CATTCTGT-GGAGGGACAA-CAAACACGT-------------ATATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAAATTA---------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAATATTGCTTGT-----------------------------TCTT------TT-TATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AAA-----TTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------T----AA-TT---TGGATC--TATTTTNTAA-AG-CACCCATCTGTATAACACA---------------CC-----TTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCCATN---AATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATGAA--TAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTGA-TGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTACGCCGNAATTAATCAG-------------------------TTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTCAGTNCCT-----------CTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGTAG-----TAAGCTATCCGAGTA-AAAATTGACATCCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 11111111111111 1 1111 11111111111 22222222222 2222222 11111111 11111111 1 111 111111 111111111111 111111 444444444 3333333333333333333333333333 1111 1111111 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111111111 11111 2222222222222222 7777777777777777777777777777 22222 11 11111 8888888888888888888888888888 222 33333333333 11111 222222 11 11111 4444444444444444 2222 1 5555555555555555 111 22 1111 444444444444444444444444444444444444444444444444 4444444444 22 44444444 11111 999999999999999999 333333333333 11111 777777777777777777777 11
lowQualScore : 0 0 2 5555 2 2 3 1 2 2 88888888888888 0 3 0000 2 2 3 3 888888 3 77 77777777777 888 3 44 6 999999 2 44 88 4444 444 33 2 444 2 2 2 5555 2 2 2 22222222222 2 1 0000000 5 2 00000000 55555555 1 77 3 3 3 44 2 5 3 666 000 888 222222 0 0 1 9999 1 555555555555 333333 4 66 4 4 4 222222222 4 1 5 3333333333333333333333333333 0000 4444444 4 4 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55 0 1 4 5 3 666 3 66666666 9999999999999 1 00000 4 9999999999999999 8888 0 5 66 1 4 2 3333333333333333333333333333 0 0 5 0 5 66 6 4 3 4 00000 4 55 00000 2 4 1 4 4 0 4 0000000000000000000000000000 5 222 1 66 55 55 1 4 22222222222 33333 4 66 9999 777777 3 55 88 88888 6 6 3 0 2222222222222222 1111 2 0 3 2 1 1 8888888888888888 444 1 44 6 1 3333 3 6 666666666666666666666666666666666666666666666666 6 1 1 0 6 1 3333333333 1 00 6 22222222 44444 6 0 33 666666666666666666 1 1 111111111111 77777 3 6 1 3 0 1 777777777777777777777 88 0
lowQualScore : . . . .... . . . . . . .............. . . .... . . . . ...... . .. ........... ... . .. . ...... . .. .. .... ... .. . ... . . . .... . . . ........... . . ....... . . ........ ........ . .. . . . .. . . . ... ... ... ...... . . . .... . ............ ...... . .. . . . ......... . . . ............................ .... ....... . . . ..... .......................................................................................... .. . . . . . ... . ........ ............. . ..... . ................ .... . . .. . . . ............................ . . . . . .. . . . . ..... . .. ..... . . . . . . . ............................ . ... . .. .. .. . . ........... ..... . .. .... ...... . .. .. ..... . . . . ................ .... . . . . . . ................ ... . .. . . .... . . ................................................ . . . . . . .......... . .. . ........ ..... . . .. .................. . . ............ ..... . . . . . . ..................... .. .
lowQualScore : 7 1 7 7777 6 7 3 5 7 7 33333333333333 7 0 9999 4 1 1 1 888888 1 33 44444444444 555 1 22 2 888888 0 22 88 4444 777 77 7 777 7 7 7 7777 7 7 7 11111111111 7 1 7777777 3 9 22222222 22222222 4 33 1 1 1 22 8 6 6 444 222 888 888888 8 7 1 4444 6 000000000000 777777 4 33 4 4 4 999999999 4 4 0 9999999999999999999999999999 6666 4444444 4 4 7 22222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 8 0 4 7 6 666 1 11111111 2222222222222 0 22222 4 4444444444444444 9999 2 0 11 8 4 0 4444444444444444444444444444 2 4 0 2 0 11 2 4 9 4 00000 0 00 00000 3 0 0 4 4 7 4 1111111111111111111111111111 0 888 4 11 22 11 0 4 99999999999 11111 4 11 4444 777777 0 33 00 33333 7 7 2 8 2222222222222222 2222 5 0 2 5 0 0 5555555555555555 000 0 22 7 0 3333 7 7 555555555555555555555555555555555555555555555555 7 4 0 7 7 0 7777777777 0 77 5 88888888 55555 5 8 22 222222222222222222 0 0 222222222222 88888 2 4 4 2 8 0 000000000000000000000 66 8
consensus : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---A-T--AA-ATTCT--A-AAC--ACTT-C--AGTG---TT--TTTG-T---GAG-T-AAAA-TCA----TGT-A-A-A----G---T--A-AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCACTG-TTTGGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAAT----GTA-----CATN-----ATA-TGAAT-TAT-GAAA-TT-G-A--CA-G-CATTCTGT-GGAGGGACAA-CAA------AC--A-----CGT-A-------TATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A----T---TGCTTG------TT-CTTTTTATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AA-----ATTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------TAA-TT---TGGATC--T-ATT-TTNTAA-AGCACCCATCG-T-GTATAAC--AC-A--CCTTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCCANGAATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATG-AAATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTG-ATGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTA-ACCG----GA--------------AT-TA-----ATC---AGTTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A----------GT--NCCTCTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGT-----A----CT--A---AGCTATCCGAGT-AAAAATTGACATCCCT
Reference ( family-1442 ) : GTCGACGAGTACTCGAGTACT-CGACTATCGCTC----GGTCGTACCGA-TCATCGA-C-TA------AA---ATTTT-ATANTC-GAGTACTCG-TT-A------AA-A--ATN---C---T--TTTTTCAGTAAAGTTT---A-T--AA-ATTCT--A-AAC--ACTT-C--AGTG---TT--TTTG-T---GAG-T-AAAA-TCA----TGT-A-A-A----G---T--A-AAGTCAAACC-G-----TTTT-AATTC-GTTCATGTTCA------AATA-------AATCATT--TGA-GTTTGGATGTT-GG-TCAG--TAAAAC-ATGCCTCCGA---AATCCACTG-TTTGGA--CATA------CTTTAAAAGATCTCATG----ATGGAAAACCGGTGAAAT----GTA-----CATN-----ATA-TGAAT-TAT-GAAA-TT-G-A--CA-G-CATTCTGT-GGAGGGACAA-CAA------AC--A-----CGT-A-------TATT----AAAGGCCGATA-------TT-CGTCAGAAT-CGCCGT---TAAATTCTCTCG-T---AA-----AA------------CGAA----CA--------GA------TACCGNAAAAAAAC------AAA--AT-----C---TNGATA-TTTGCTG-ACAAAACTT-A-GAAACGGGC--------TGTCGACCAA-A-TTA-------GTTNT-TN--AACAAA-TC----------------GTAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A----T---TGCTTG------TT-CTTTTTATGC-CGTAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCATTAT-----CAAAA-G--AA-----ATTGACCGTTTA-TCTACTTCTCNG-TCACGAGTCAGTGATTCAG-GCG-GA-A-TA--C----G------G--------TAA-TT---TGGATC--T-ATT-TTNTAA-AGCACCCATC--T-GTATAAC--AC-A--CCTTCGAAGT----TGTGTTAATTTTCATGAAAA-AATAGTTGCACGGCGCACTCCATNAATTTTCTCAGAAAAAAAAAAGCGTGCCCCATGTTTATTTCACATAAACAGAAACAATGAAATAAGATG--AATAAAT--A-A-TGGAATGCATTTCT----GTCTTATATTGGATATTG-ATGTACTTTTCATGCCAGCNTNC-TTT-AA--ATGAATAAACCCAAGCCTG---TCTGTTGTG-TCA-AGCTAT---ACACGT-GTAATT-ATCTACGCCG----NA--------------AT-TA-----ATC---AGTTCAACTGAACAGATTTNTAAACGGCTATCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGATTTAACCGGAACAANTT----AA----GNTC-AGATAAACAGCCTTTCGGA-TT-CACCAGTGAACTTCGCTATTCGTGCGCGCTGAGGTACATGC-CA-TGT--TG---GACTGATGACTTTGAAACACTTGTACCCTGTC-A----------GT--NCCTCTCCCCTTTTTACCGAGTACTCGACTATCGCTCGACTAAAGCCTCCGAGT-----A----GT--A---AGCTATCCGAGT-AAAAATTGACATCCCT
gi|1 : GTCAACGAGTATTCGAATACT-CGACTATCGCTC----GGTCGTAACGAATCATCGAGC-TA------GA---AATTT-ATACTCCGAGTACTCG-AT-A------AA-AC-ATT---C---A--CTTTCCAGTAAATTCT---A-A--AG-ATAC-----ACC--ACAT-C--AG-G---TCAATTTT-T---GAG-T-AAAA-TCA----TGT-A-A-A----G---T--AGAAATGAAACCTG-----TCTT-AATTC-GTTCATGTCCA------TATA-------AATCAAT---GA-GAC-GGATGTTCGG-CCAG--TAAAAC-AT--CTCTGATGAGAGAGACTG-T--GGAGGCATA------CATTAAACGATCTCATG----TTGGAAAACCAATGAAAT----ATA-----CATT-----ATA-TGAAT-TAT-GAAA-TT-G-A--C----CAATCTGT-GAAGGGACAA-CAC------AC--A-----CAT-AATATTTATATC----AAGTGCCAATA-------TT-CGTCAGATT-CAGCAT---CAAATTCTCTCA-----AA-----AA------------CGAA----CA--------GA------TTCCGAAACAAAAC------ACA--AT-----CC--TTGACT-TTTACTG-ACAAAACTT-A-GAAATGGGC--------TGTCAACCAA---TTA-------GTTGT-TT--AATAAA-AT----------------ATAATATTAATGAAATCGTACATT-GAACATACATTT--GAAAGCCTT-TATAAAT----A----T---T-----------------TTTATGC-TGTGGTG-AATTTT--GATTGCTGC-CGGTACAACA-TTTCATCAT-----CAAAA-G--AA-----ATTGACCGTTTA-TCTACTTCTCCG-TCACAAGGCAATGATTCAG-GCG-AACA-TA--C----G------G--------TAA-TTG--TGGATC--T-AAT-TTTTAA-AGCACCCCTCG-T-GTAT--------A--CCGTTGGAAT----TGTGGTAATTTTCATGAAAAGAATAGTTGCACGGCACACTCAAGAAA-CTTCTCAGAAAAAGAAAAACGTGTCCCATGTTTAGTTCACATGAACAGAAACAATGAAATAAGATGTAAATAAAT--ATATTGGAATGCATTTCTGCACGTCTTGTGTTGGATATTG-AGGTACTTTTCATGCTAGCCCAC-T---------------ACCAAGGCCTG---TCTGTCATGATTA-AAATAT---GCTTAT-GTAATT-ATCTAAACCA----GAGACCTATATACAACAT-TATATATGTCCTTGATTCAATTTAACAAATTTCTAAAAGGCTATCCAGAT
gi|1 : TAATTGAATTAGATTGCAGAAGTA----GA----GCTC-AGATAAACAACCTTTC--------ACCAGTTAACTTCGCTATTCGTATGCGCCGAGGTACATGCACA-TGTAATGTATGACTAATGACTGTGAAACACTTGTACACTGTA-T----------GT--CGCTCTCCCCTTTCTACCGAGTATTCGACTATCGCCCGGCTAAAGCCTCCGAAT-----A----CTCGACTTAGCTATCTGAGT-ACAAATT-ACATCCCTtgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgataattgaattagattgcagaagtagagctcagataaacaacctttcaccagttaacttcgctattcgtatgcgccgaggtacatgcacatgtaatgtatgactaatgactgtgaaacacttgtacactgtatgtcgctctcccctttctaccgagtattcgactatcgcccggctaaagcctccgaatactcgacttagctatctgagtacaaattacatccct
gi|10 : gtcaacgagtattcgaatactcgactatcgctcggtcgtaacgaatcatcgagctagaaatttatactccgagtactcgataaaacattcactttccagtaaattctaaagatacaccacatcaggtcaatttttgagtaaaatcatgtaaagtagaaatgaaacctgtcttaattcgttcatgtccatataaatcaatgagacggatgttcggccagtaaaacatctctgatgagagagactgtggaggcatacattaaacgatctcatgttggaaaaccaatgaaatatacattatatgaattatgaaattgaccaatctgtgaagggacaacacacacataatatttatatcaagtgccaatattcgtcagattcagcatcaaattctctcaaaaacgaacagattccgaaacaaaacacaatccttgacttttactgacaaaacttagaaatgggctgtcaaccaattagttgtttaataaaatataatattaatgaaatcgtacattgaacatacatttgaaagcctttataaatatttttatgctgtggtgaattttgattgctgccggtacaacatttcatcatcaaaagaaattgaccgtttatctacttctccgtcacaaggcaatgattcaggcgaacatacggtaattgtggatctaatttttaaagcacccctcgtgtataccgttggaattgtggtaattttcatgaaaagaatagttgcacggcacactcaagaaacttctcagaaaaagaaaaacgtgtcccatgtttagttcacatgaacagaaacaatgaaataagatgtaaataaatatattggaatgcatttctgcacgtcttgtgttggatattgaggtacttttcatgctagcccactaccaaggcctgtctgtcatgattaaaatatgcttatgtaattatctaaaccagagacctatatacaacattatatatgtccttgattcaatttaacaaatttctaaaaggctatccagattgtacttgtaaattggtgttagccttacagctcatcagcaatatacaaaaggaattccaagcgacaaacaaaacatttatgaacaatatgaaaagcggagtggctcttagaggaaggacttatgtttagataattatacgttaagtatataaacatgattagacgaGGCCGATA-------TT-CGTCAGAAT-CACC-------AATTCTCTCG-T---CA-----AA------------TCTT----CA--------AA------TA----AAAAAAAA------AAA--AT-----T---TGG
gi|10 : ---AA-----AA------------T-AA----CA--------GA------TACTGCAATAAAAT------A-----T-----CGGTTGGATA-GTTGCTG-ACAAAACTT-tgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|10 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccTTG--GAAAGACCT-TATAAAT----G----TGTCTGCTTGA-----TT-CTTTTCATGC-CATAGTG-CATTTT--GATCGTTGC-TTGTACAACA-TTTCCTTATATTCATAAAA-GGAAA-----AATGATTGTGTA-TCTACTTTTCAG-TCACGAGTCAGTGATTCAG-GTG-GA-gatcttagttttggaaagaccttataaatgtgtctgcttgattcttttcatgccatagtgcattttgatcgttgcttgtacaacatttccttatattcataaaaggaaaaatgattgtgtatctacttttcagtcacgagtcagtgattcaggtgga
gi|11 : ggccgatattcgtcagaatcaccaattctctcgtcaaatcttcaaataaaaaaaaaaaaatttggtgaattcaccaaagaaaacccaccaaaataacagatactgcaataaaatatcggttggatagttgctgacaaaacttgatcttagttGGGTACT-CGACTATCGCTC----GGTCGCATCGA-TCATCGA-C-TA------AA---TTTTTCATAGTG-GAGTACTTG-TT-A------AA-A--ATA---AAAGT--ATTTCCAGTAAAGTTT---A-T--AA--TTCT--A-AAC--ACTTGC----TG---TT--TTTG-T---GAG-T-AAAA-TCA----TGT-A-A-A----AGGTT--A-AAGTTAGACC-G-----GCTTGAATGC-ATTCATGTTCA------AATA-------AATGATT--CAA-GTTTGGATGTT-GG-TCAG--T-AAAC-GTGCCTCTAA---AATCCACTG-TTTAGG--CATA------CTTTA-----------------------------GAAAT----GT-------ATT-----ACA-TGTGTCTAT-AAAA-TT-A-AGCTA-G-CATTCTGT-GGA
gi|12 : atgtcaatGCGCACTCCAAGAATTTTT----AAAGAAAAGAGCATGCCCCATATTTATTTCGCATAAA-------AATGAAATAAGATA--AA-------------GAATACATTTCT----GTCTTATACTA---ATTGAATATAC-CTTCATGCTATCTTTC-TTT------T---TAAACCCAAGCCTG---TCTGTTGTG-TCATAGCTAT---ACATGT-GTAATT-A---ATGCC---------------------AC-TG-----CT----AGT----CTGTACATATTTGTAAACGGTTATCCTGAT
gi|12 : ataTAAACGGTTATCCTGA-TTTCACCAGTGA-------------TGCGCGCTGAAGTAT------------------GATTGATGACTTTGAAACACTAGTACACTGTC-A----------GT--TCCttcaccagtgatgcgcgctgaagtatgattgatgactttgaaacactagtacactgtcagttccc
gi|13 : atagcgcactccaagaatttttaaagaaaagagcatgccccatatttatttcgcataaaaatgaaataagataaagaatacatttctgtcttatactaattgaatataccttcatgctatctttctttttaaacccaagcctgtctgttgtgtcatagctatacatgtgtaattaatgccactgctagtctgtacatatttgAGTACT-CGACTATCGCCC----GGTCGTATCGA-TCATCGA-C-TA------AATTTATTTT-ATAGTC-GAGTACTCG-TT-ACATGTAAA-A--ATAGTCC---T--TTTTTCAGTAAAGTCA---A-T--AC-ATTCT--A-AAC--ACTT-TGAAGTGGGTTT--TTTGGT---GAG-T-AAAA-TCA----TGT-A-A-A----G-------------------G-----TTTT-AATCC-GTTCATGTTCA------TATA-------AATCATT--TGA-GTTTGGATGTT-AG-TCAG--T-AAAC-ATGCCTCAAA---AATCCACTGTTTTGGA--CATACATGTCCTTTAAAAGATATCTTG----ATGGAAAc
gi|14 : tcaactGTTGACGAGTATTCAAGTACT-CAACTATCGCTC----G--TGTACCGA-TCATTGA-C-TA------AA---TTTTT-ATAGTC-CAGTATTCA-TT-A------AA-A--ATA---CCC-T--TTTTACAGTAAAGTTT---A-T--AA-ATTTT--A-AAC--AATT-C--AGTG---TT--TATA-T---GAG-T-AAAA-CCA----TGT-A-A-A----GG--C--A-AAGTCAAAAC-G-----TTTT-AATTC-ATTCATGCTCA------AATA-------AATTATT--TTA-GTTTGGATATT-AG-TCAG--T-AAAC-ATGCTTACAA---AATCCACAG-TTg
gi|15 : cagtgatAGTACT-CAACTATCGCTC----GGT-G-ACCGA-TCATTGA-CTTA------AA---TTTTT-ATAGCC---CTATTCGATT-A------AA-ACTACC---C---T--TTTTACAGTAAAGTTTTGAG-TTGAA-ATTTTTGA-AACCAATTT-C--A-------T--TTTG-TTACGAGTT-AACA-TTATATGTGT-A-A-ACAGGA---C--A-AAGTCAAAAC-G-----TTTTAAATTC-ATTCATGCTCT------AATAAT-----AATTATT--TTAGGTTTGGATATT-AG-TCAGTATAAAAC-ATGCTTACAA---AATCCAccag
gi|16 : GTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-C-TATTCAGCAA---AGTTT-ATATTT-----------TT-A------AA-C--ATT---T---CAGTTTGTGAGTAAA-T-------T--AA-TTTCT--A-AAC--ACTT-C--AGT----TT--TTTG-T---GAG-T-AAAA-TCA----TGT-A-A-AG---G---T--G-AAGTCAAACC-GC----TTTT-AATTC-TTTGATG-TCA------AATA-------AAT--TTACTGT-GTTTGGATTGT-GG-TCGG--T-TAAC-ATGCCTCTGA---ATGCCACTGTTTTGGA--CATA------CTTTAGAA
gi|17 : TCTAGTACT-CGACTATCGCTC----ATTCGTACCGA-TCATCGA-C-T--------A---ATTTT-TT--TC----TA---G-TT-A------GG-A--ACT---C---T--TTTTGCAGTAAAGTTT---A-T--GA-ATTTT--A-AGC--ATTT-G--AATG---GT--TATG-T-----G-T-AAAA-CCA----CGT-ATA-G----G---T--A-ACGTCAAA--------------A-----GTTCATGTTC-----------------------TT--TGA-GTTTGGGTGTT-CG-TCAA--T-AAGC-ATGCCTTCGA---AAACCAATA---TGGA--CATA------CTTTAAAATATCTTTTG----ATatatatt
gi|18 : tcaAACCCAAGTGTGCCATCTGTT----TCA-AGCTA----ACACGTGGTACTT-ATATTCACTGAGTTAA--------------ATCTA-----AAC---AGCTAAATTGAA
gi|18 : TTGAAATACTTCTTCTCTGCCCA----------GT--A--TCTCCCTTCTTAACCGA-TACTAGACTATAGATCGACTAAAGCCTCAGAAA-----ACTCGGT--A---AGCTATCCGAGT-AAAAGCTGAC-TCCCTacttcgctttcttatggtgcttgaaatacttcttctctgcccagtatctcccttcttaaccgatactagactatagatcgactaaagcctcagaaaactcggtaagctatccgagtaaaagctgactcccta
gi|19 : aacccaagtgtgccatctgtttcaagctaacacgtggtacttatattcactgagttaaatctaaacagctaaattgaaacttcgctttcttatggtgcTACTCGAATATTGTGAATATCGCTC----GGTTATACTGA-T-----A-C-T----------------C-ATATTT-GCTTACT-G-TT-A------CA-A--TTA---T---T--TTTTTTAG----GTTT---AAT--AATATTTT--GTAGT--AC---------A---TT--CTTG-T---A---T-AAA---------TGA-A-G-G----G---TTCA-AAGTCAA-CA-G-----TTTT-AATTCTGTTCATGTTCT------AAAA-------GATCATT--CGC-ATTTGGGTTTT-GGCTCGT--TAAAa
gi|2 : atATCTCATG----ATGGAAAATCGGTCGAAT----ATA-----CATT-----ACA-TGAAT-TAT-GAAA-TT-A-A-----G-CATTCTGT-GGAGGGACAA-CAA------CC--A-----TGT-A-------TATT----AAAGGCCAATA-------TT-CGTCAGAAT-CACCATATTTAAATTCTCTCA-TCTAAATCTTCAATT----------CGAAATAACA--------GA------TACAGAAAAAAAA--------------------------ATA-TCCGCTG-G--AAACTT-A-GAAATAGGT--------TGAAAACCAA-A-TTA-------GTTTT-TG--AACAAA-TT----------------GCAATA---ATGAAATCGTACATT-GAACATACATTG--GAAAGACCT-TATAAAT----A----TGTTTGCTTGACAAGTTT-CTTTTT-TGC-CATAGTG-CATTTT--GAGTGTTGC-TTGTACTACG-TTTCATTAT-----CAAAG-G--AA-----ATTGACTGTTTA-TCTACTACTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-T---T----G------GCTTCTGAATAATTT---TGTGTC--T-ATT-GTGTTC-AGCACCCATCA-T-GTAT--C--AC-A--CCTTCAAAGA----TGTGTTGA--TTCATGAAAA-A----TGGCACGGCGCACTCCATGAATTTTCTCAGAAAAAAAA-----TGGTCCATGCTTATTTCACATAAACAAAAACAATAAAATAAGATGAAAATAAATAGA-A-TGGAATGCATTTCT----GTCTCACATTGGATATTG-ATGTATTTTTCATGCCAGCGTTC-TTGAAA--ATGAATTAACCCAAGCCTG---TCTGTTGTGTTCA-AGCTAT---ACGCAT-GTAATTGATTTA-ACCG----GA--------------AC-AA-----ATTA--AGTT---CTAAACAGtcttcgtct
gi|2 : TAATTGATTTAACCGGAACAAATT----AA----GTTC----TAAACAG-CTATCGG---------AG-----TTCCCTATGTGCGCGCGCTGAGGTATAT------------------TTGATGACTTTGAAACACTCATACCCTGTC-A----------GTCCCCCCCCCCCCTTTTAACAGCACACTCGACTATCGCTCAATT-AAGCCACCAAGTACTCAA----CT--A---AGCTATCCGAGT--AAAATTGACATCCCTctatcggagttccctatgtgcgcgcgctgaggtatatttgatgactttgaaacactcataccctgtcagtccccccccccccttttaacagcacactcgactatcgctcaattaagccaccaagtactcaactaagctatccgagtaaaattgacatcccta
gi|20 : atctcatgatggaaaatcggtcgaatatacattacatgaattatgaaattaagcattctgtggagggacaacaaccatgtatattaaaggccaatattcgtcagaatcaccatatttaaattctctcatctaaatcttcaattcgaaataacagatacagaaaaaaaaatatccgctggaaacttagaaataggttgaaaaccaaattagtttttgaacaaattgcaataatgaaatcgtacattgaacatacattggaaagaccttataaatatgtttgcttgacaagtttcttttttgccatagtgcattttgagtgttgcttgtactacgtttcattatcaaaggaaattgactgtttatctactactcagccacgagtcagtgattcaggtggaattggcttctgaataattttgtgtctattgtgttcagcacccatcatgtatcacaccttcaaagatgtgttgattcatgaaaaatggcacggcgcactccatgaattttctcagaaaaaaaatggtccatgcttatttcacataaacaaaaacaataaaataagatgaaaataaatagaatggaatgcatttctgtctcacattggatattgatgtatttttcatgccagcgttcttgaaaatgaattaacccaagcctgtctgttgtgttcaagctatacgcatgTGT--TCT-AGCTAT---ACATGT-GTAAT------------------------------------A-----A-----AATTCAATTAAGCAAATTTCTAAACGGCTATCTAGATa
gi|20 : CTTTGAGATACTTTTACCATGTC-A----------GT--TCGTTTTTT-TTTTTACCGAGTACTCAACTATCGCTTGACTAAAGTCTCCGAGT-----A------------------CCGAGT--AAAATTGACACCCTTaagcagcctttctctatctgtgtgctttgagatacttttaccatgtcagttcgtttttttttttaccgagtactcaactatcgcttgactaaagtctccgagtaccgagtaaaattgacacccttaag
gi|21 : tgttctagctatacatgtgtaataaaattcaattaagcaaatttctaaacggctatctagataagcagcctttctctatctgtgtgC-TGGTGCAATG-TTTCAATAC-----CAAAGTA--AA-----ATTG-CCGTTTA-TCT---TCTCTG-TCACGAGTTAGTTATTCAG-TTG-G------------------------------AA-CT---CGG---------T-CCCCAA-GG------------ATAGAACGCAC-A--CCTTCAAAGTAAGGTGGATTAATTTCCTTGGAAA-AAT-GTT---CGGCGCATCCTTTTAATTTTCTTAGAAAAACAA---CATGCTCTATGTTTAaag
gi|22 : TACTCGAATATT--GAATATCGCTC----GGTTATACTGA-T-----A-C-----------------TC-ATATTT-GATTACTTG-TT-A------AC-A--ATT---T---T--TTTTTT--T--AGTTTA--A-T--AATATTAT----------TTT-T--AGTA----C--ATTG-T-----A-T-AAAC-TTA--------A-G-G----G---T--A-AAGTCAAACCAG-----TTTT-AATTC-GTTCAc
gi|23 : -----CATA-----ATA-TGAAT-TAT-AAAA-TTTGCA--TA-G-CATTCTA--AGATGGAC---CAA------AA--A-----TGT-A-------TATT----AAAGACCGATA-------TTCCGTTAGAAT-CATT-TAA-TAAATTATCTCGTT---AA-----AA------------
gi|24 : ATTAT-----CAAAA-G--AA-----ATTGACCGTTTA-TCTTATTCTCCG-TCATAAATCAAT------G-GCT-AA-T-TA--T--------------------CAA-TT---T-GATC--T-ATT-GTGTAA-A-C-----------------C--AC-A--CCTTCGAAGT----TGTGTTAATTTTTATGAatgtgaattcaaata
gi|25 : TG---CT--TTTG-T---GAG-T-AAAA-TCA----TAT-A-A-AG---G---T--A-TAAT-AAAAC-GTATTTTTTT-AAGTC-GTTCATGTTCA------AATT-------AATTATGA-TGA-GCATAGATATT-GG-TCGG--TGA
gi|26 : cactaAA----GA--------GA------TACCGGGAAAAA--------------T-----T---TCGA-A-TG-GCTG-ACAAAACTA-A-GAAACAGAC--------TGACGACCAA-A-TAA-------GTTTCAGG--AACAAA-TC----------------GTA
gi|27 : ccacaaataccccaaatGGC--------TGTCAACCAA---TTA-------GTTAT-CT--AATAGG-TC----------------GTAATA---ATGAAATCGTACCTT-GAACATACGTTG--GAAAG--CC-TATATAT----A----T---
gi|28 : a---TGGATC--T-GTT-GTATAA-AGCACC-ATCAGT-GTATAAC--GC-ATTCCTCCGAAGT----TGTGTTACTTTTCATTAAAA-
gi|29 : AGTACT-CGACTATCGCTC----AGTCGTACTGA-TAATCGA-T-TATTCAGCAA---AGTTT-ATAATT-G-GTAC
gi|3 : ctTACCCGAATACT-CGACTATCGTTC----GGTTGTACCGA-TCATCCA-C-TA------AA---ATTTTTATACTC-GAGTACTCG-TT-A------AA-A--ATA---G---C--CATTTCAGTAAATTTT---A-A--AG-AT--------GC--A--T-C--GGTG---CT--ATTT-T---GAG-T-AAAA-TCA----TGG-A-A-A----GG--T--A-AAGTCAAACAAG-----TTTT-AATTC-ATTTATGTTCA------TATG-------CATCATT--TGA-ATTTGGGTGTT-GA-TCAG--TAAA-C-ATGCCTCTGA---AATACACTG-TATGTG--CATA-------TTTAAAGAATTTCATG----GTACAGAATCGATGAAAT----ATA-----CATT-----ATA-TGAAT-TAT-GAAA-TT-G-AA-CA-ATCATTTTGT-GAAGGGACAA-CAA------AA--A-----C---A-------TATT----AAATGCCAATA-------TT-CGTCGGAAT-CGTCAT---CAAGTTCTCTCA-A---AA-----AA------------TGAA----CA--------GA------TGTCT---AAAATC------AAATTAG-----C---TTGATA-TTTACTG-ACAAAACTT-A-GAAGCAGGC--------CGTCAACGAA-G-T-A-------GTTAT-TT--AATAAA-TC----------------GTAATA---ATGAAGTCGTACTTT-GAACATACATTG--TAACGCCTT-TACAAAT----A-----------------------CTTTTTATGC-CGTAGTG-AATTTT--GATTGTTGC-CTGCACAGTA-TTTCATTAT-----CAAAC-G--AA-----ATTGACAGTTTA-TATATTTCACAG-TCACACGTCAACGATTCAG-GCG-AA-C-CT--T----G------GA-------TAA-TTA--TGGATC--T-ATT-T-CTAA-AGCACACCTC--TTGTATAACCAAC-A--CCTTCGAAGT----TGTGTAAATGTTCATAAAAT-CAAAGTTGCATGGCGCACTTCAATAATTTTCTCAGAAAAAGAAAAACGTGCCCCGTGTTTATTTTATATTTACAGAAACAATGAAATAAGATG--A--AAAT--A-A-cg
gi|30 : ttagggatgtcacccacACT-CGGCTATCGCTCCCGAGGTCGTACCGA-TCATCGA-C-TA------AAT--ATTTC-Aat
gi|31 : gtctagggT-C--AGTG---TT--TT-G-T---AAG-TGAAAA-CTA----TGT-A-ATG----G---T--C-AAATCAAACCGG-----TTTT-AA
gi|4 : ATTTT--GATCATTGC-TTGTACAACT-TTTCCTTATATTCGTAAAA-GGAAA-----AATGATCGTTTA-TCTACTTCTCAG-CCACGAGTCAGTGATTCAG-GTG-GA-A-C------------------------TAG-CTCCATGGGTC--T-ATT-TTATAA-AGCACCCATAG-T-GTATAAC--AC-A--TGTTCAAAGT----TGTGTTAATTTTTACGAAAA---TAATTGCACGGTGCTCTC-AGGAATTTTCT--GGGGGGAAAAAGCACACCCCATGTTTATTTCTCA-AAA-AGAAAGAGT----TA---T-----TAGAT--A-T-TGGAATGAATTTCT----GTCTTATATTGGATATTG-ATGTACTTTTCATG-CAGCGTACTTTT-AAATATGAATAAACCCAAACCTG---TCTGTTGT----A-A--TACAGAACAC-T-GT------TCTA-GCTA----TAC-------------ATGTA-----ATT---AATTCAACTGAACAGTTTTATAAACGGCGATCTAGAT
gi|4 : TAATTAATTCAACTG-AACAGTTTTATAAACGGCGATCTAGATAAACAGCCTTTCGGAATT-CACCAATGAACTTCACTGTTCGTGTGCACTGAGGTGCATGTTCAGTGT--TG---GACTGATGACTTTGAAACACATGTACCCTGTC-ATTTTGGGTTGGT--GGTTTT--TTTTTTTACTGAGTATTCAACTATAACTCCACTAAA------------------------------CTATCCGAATAAAAAACTGACATCTCTaaacagcctttcggaattcaccaatgaacttcactgttcgtgtgcactgaggtgcatgttcagtgttggactgatgactttgaaacacatgtaccctgtcattttgggttggtggtttttttttttactgagtattcaactataactccactaaactatccgaataaaaaactgacatctctaat
gi|5 : attttgatcattgcttgtacaacttttccttatattcgtaaaaggaaaaatgatcgtttatctacttctcagccacgagtcagtgattcaggtggaactagctccatgggtctattttataaagcacccatagtgtataacacatgttcaaagttgtgttaatttttacgaaaataattgcacggtgctctcaggaattttctggggggaaaaagcacaccccatgtttatttctcaaaaagaaagagttattagatattggaatgaatttctgtcttatattggatattgatgtacttttcatgcagcgtacttttaaatatgaataaacccaaacctgtctgttgtaatacagaacactgttctagctatacatgTCAACGAGTAT---GGTACT-CGACTATCGCTC----GG-AGTAC-------TTGA-T-TA------AA---A-------------AATA--------A------CA-A--A-C---C---T--TTTTTCAGTAAAGTCT---A-T--AA-ATTCT--A-ATC--AATT-C--AGTA---TT--TTTG-T---GAG-T-AAAA-TCA----TGA-A-A-A----GG--T--A-AAGTCAATCC-GG----TTTT-AATTC-GTTC---------------T----------TCATT--TGC-GTGTGGATGTT-GG-TCAG--TAAA-C-ATGCCGCCGA---AATCCACTG-TTTGGA--CATA------CTTTAAAAGATCTTACG----ATGGAAACCTGGTGAAAT----G----------------ATA-TGAA---AT-TGAA-CT-G----C----CATTCCGT-GGAATGACAA-CAA------AC--A-----CAT-A-------TATT----AAAGGCCGATA-------TT-CGTCAGAAT-CACAAT---TGAATTCCCTCG-T---CA-----AAGTCTT-------CATG----CT--------GGTGAGTTTGCCACAAAAACAC------CAA--ATAA---C----AGATA-----CCG-A-AAA---T-A-AAAATGGGCTGGGTAGTTGCTGACAAA-ACTTAGAAATAGGCTGT-CG--ACCAAA-TTAGCTTTTTAGCAAATAGTAATC---ATGAAATCGTACATA-GGA-ATACAATG--GATGGACCT-TA------------------TGTTTGT-----TT-CTTTTTATGC-CGTAGCG-GAGTTT--GAATGTAGC-TCGT---ACA-TTTCATTAT-----CAAAA-GA-AA-----ATTGACCGTTTA-aat
gi|6 : atgaataTGAAAT----GTATCATGCATATATCTATAATGAAT-TATTGCAACTT-G-A--TATG-CATTCTGTTGAAGGAACAATCAACCACGTAC--A-----CGT-AGTCTA--TATTCGTCAGAATCTTATAATTTTCTCT-CGTCA-AATGTGTTGG---TGAATTCGC-CA-C---AA-----AAACACAGCCACAATAAAACCCCA--------GA------T-CCAGAAGAAAAC------ATA--TTGG---C---TGGATAGTTTGAAA-AAAAAACTTTACGAAATAGGC--------TGTCGACCAACA-ATA-------GTTTT-TTGCAGCAAAATA----------------GCAATA---ATGAAATCGTACATT-GAACATAC-TTGTTGAAGGATCTATATTAAT----ATGCTT---TGTTTGTT----TT-CTTTTTTTGCTTGTGGTG-CATTTTTGGAT-GTTACTTTTTTTGACATTTTCAAT-T-----GGAGG-G--AA-----ATTGACTTTTTATTCTACTT---AGTTCACGAGTCAGTGATTCAGAGTGAAA-A-TAGGCTCCAG------A--------TAA-TT---TGAGTC--T--TA-TTGTAATAGCCACTATT--T-GTATAAA--AC-A--CCTTCAAAGT----TGTG-TGATTTACTTGAAAA-AA---TCGCAC-GTACACTCCA--AATT-----AGAAAAAAA-------GTTCCACGCTTATGTCATATAAACCAAAA-AAT
gi|7 : CGAGTACT-CGACTATCGCTC----GGTCG--------CAT--A-C-TA------AA---TTTTTCATACTC-GAGTACTCG-TT-A------AA-A--ATG---G---C--CTTTTCAGTAAATTTT---A-T--AA-ATTCT--A-AAC--ATGT-C--AGTG---TT--TTTG-T---AAA-T-AAAA-CCA----TGTCA-A-G----G---TACA-AAGTAAAACC-AC----TTTT-AACTC-GTTTATGTTCA------AATG-------CATCATT--TGA-GTTTGGATTTT-GG-TCAG--TAATCCGATGCCTTCGA---AATCCACTG-CCTGGT--CAT---------------GATCTCGTG----ATGGAAATCCGGTGAAATGAACGTA-----CATC-----ATT-TGAA--AAT-GAAA-TC-G-AACCA-G-CATTCTTT-AGA-GGACAA-CAA------AC--ATACAGTGT-A-------TATT----AAAGGCCGATG-------TT-CGTTAGAAT-CGCCAT---TAGATTCTCTCGTT---AA-----GACCTTCAATT---CAAA----CATTTTTGGTGAGTT---CACCACAAAAAGGCCAGATAAAA--ATATCTAC---TAGATA-TTTGCTGTTCAAAGCTT-A-AAAATTAGC--------TATCGACCAA-A-TTA-------GATTT-TA--AACAAA-TC----------------GTTATA---ATGAAATCGTACATT-GAACATACATTG--GAGAGACTT-TATA------------------TTTG------------TTTAGGC-CGCAGAG-CAATTT--GA
gi|8 : gatgtcaaCGAGTACC-CGACTATTGCTC----GGTCATAC---------AA-C-TG------AA---GTTTTCATAGTC-AAATATTCG-TCCA------AACA--GTG---T---T--TTTCTT-GTAAAGTTG---A-T--AA-ATT-----------A-------AGTG---TT--TTTG-T---GAG-T-AAAACTCG----TGT-A-A-A----GG--T--C-ACGTCAAATTTG-----TTTA-AATCC-GTTCATGTTCATGATCAAATACATTGTAAATCATT--TGA-GTTTGGATGTC------------------TGACTCCAA---AATTCACAG-TGTGG---CGTA------CTTTAAAAGATTTCATGTCGTATGAACAACCGGTGAAAT----GTA-----TATG-----ATG-TGAAT-T-T-GAAC-TT-G---------CATTATGT-GGAGGATCAA-CAA------ACTTG-----CATCA-------TATT----AAAGGCTGATA-------TC-CGTCAGAAT-CACCGT---TAAAATCTCTCG-
gi|9 : gatgtcaaTTGC---ATAAA--TT---GAAACAGGT--------TGTTTTCCAA----TA--------TTGT-CC--GCCAA---C----------------GTATT-----TTAAATAGT---TTCGTACATACATTG--GAAACACCT-TTTAAATTTATA----TGTTTGCTTG------TTTCATTGTATGC-C-TAGAGACATTTT--GATTGTTGT-TTGCTCAACA-TTGCATGAT-----CAAAA-T--AAAAGTTATTGAA----TA-TTTACTTCTCTG-TTACAAATCGGTGATTCGG-TTG-AA-AGTA--T----GCCGCACG--------TGA-TGAA-TGGATTAATAATTATTATAG-CGCGCCC-TCG-C-GTATAAT--GCAA--CCCTCAAAGT----GAATTTGAATGTCATGAAAcctttgtcttcaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATGCATTATGAATATCAACGAGTATGGTAC