lowQualScore : 111111 333333333333333333333333333 1111111 11 6666666666666666666666666666666666 1 1 44444444444444
lowQualScore : 3 666666 3 000000000000000000000000000 0 77777 0000000 66 11 3 55 4 4444444444444444444444444444444444 5 3 88888 2 444 0 1 2 11 6666 1 1 1 66666666666666
lowQualScore : . ...... . ........................... . ..... ....... .. .. . .. . .................................. . . ..... . ... . . . .. .... . . . ..............
lowQualScore : 6 666666 6 333333333333333333333333333 9 77777 0000000 22 33 3 00 0 5555555555555555555555555555555555 0 6 44444 9 777 6 9 7 88 1111 4 0 0 55555555555555
consensus : CTGTA-AACCAAC-----TTTTA-TTCGCGGCT-G-TTTAT-TTTCGCAA------TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGAN-TAAT-TTTCGCGA--TC-GAGCNTT-TTT--CA--T----ATN---CA--CG---ACAGACA-TTC----AA-GGACTGG---TTCGCGGCGAGAAATA-TTCGCGACGAT----GAGGTTCTCGCGAA--T---T---C---AAAATT
Reference ( gi|9 ) : CTGTA-AACCAAC-----ATTTA-TTCGCGGCT-G-TTTGT-TTTCGCTA------TTCACCTGTGGTAA-----ACTG-------GTTCGCGGTGAT-TAAT-TTTTGCGA--TC-GAGCGTT-TTT--CA--T----ATT---TA--TG---ACAGACA-TTC----AA-GGACTGG---TTCACAACGATAAATA-TTCGCGACAAT----GCGGTTCTCGCGAA--T---T---C---AAAATT
gi|12 : CTGTA-AACTAAA-----TTTTA-TTTGCAGAT-GCTTTAT-TTT-GCAA------TTCACTTGTGGATA-----ACTG-------GTTCATGGCGAG-TAAT-TTTCGCAA--TC-AAG-ACT-TTC--TG--T----AGT---AAACAA---ACAGACA-TTC----AA-GGACTGG---TTCACCACAAGAAATA-TTCACAATGAT----GAGGTT
gi|19 : aCTGCA-AACCTAT-----TTTTA-TTCGCGGC--------------G--A------TTAACCTGTGGTAA-----AATG-------GTTCGCGATGAG-TAAT-TTTCACGA--TC-GAGCCTT-TTT--C
gi|3 : attaCTGTA-AACCAAC-----ATTTA-TTCGC
gi|17 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatCTGTA-AACCAAC-----TCTTA-TT-GCGGCT-A-CTTCA-TTTTGCTA------TTTACACGTGATGT-----ACTG-------GTTCATGGTGAG-TAAT-TTTTtaa
gi|1 : CTGTA-AACACAC-----TTTTA-TTCATGACT-----------TCGCAA------TTCACCAGCAATGA-----ACTG-------GCCTGCGGAGAC-TAGT-TATCCTGAACAC-GATCATC-TTC--AA--C----ATA---CA---G---A-AGACA-TTG----AA-TGTCGGG---TGCACAGCGAGAAACA-TCCATGATCAT----GAGGTTATTAGGAAC-C---T---CAGGAAAATTcattatatatgacttttggctgtaaca
gi|4 : caactcgttgcaactcggctaaaaataaataaataaattttaaatgaattgaagtatggagaaggttgaatccctgtaacaataaaggaaggggtggctcaaattcaatataCTGTC-AACCAACTTTTCATTTAATTAAC--------TTAT-TT-CATAA------TTTACCAGTGTTAA-----ACTACCAGATAATTTGCAGTGAC-GTAT-TTTCATGA--CT-GAAATAA-TCT--CAAGC----AAG---TA--CA---AGAGACA-TTTTTAAAA-AGACTGG---TTCGCAGCAAGAAATA-TTCACGACAAC----AAGGTTCTTGTGAA--tctcacatgtgaaaaaaacttgatggtttgtagtaaa
gi|18 : gtgaatcaaatgaaaaatttaaataatgCTGTC-AACCCAC-----ATTTA-TTCGC--CT-G-Tcctcacaaaaagcaggtctggtttacagta
gi|6 : agggccactggttcgcagtgagaaatattggcgacaatgaagttctcgcgaatcttgtgaaattttcttTGTA-AACCAAC-----TTTGG-TTCATGCCT-G-TTTTA-TTTCACAA------TTCACCTGTGGTAA-----ACTG-------GTTCACAGTGAG-TAA---TTTGCAA--TT-GAGTCTT-TTT--CAT-T----ATC---TA--TG---ACAGACT-TTC----AA-GGACTGG---TTCGCAATGAGAAATA-TTTGTGATGAT----GAGGTTCTTACAAG--T---ttttcg
gi|5 : tatTGTATACCCAAC-----TTTTA-TTTCCAA-T-G-TCTTTATTTTGCTACATGTATTTATCAGTGATGACTTTAATTA-------GTTTATGGCAGC-TGAT-TTTTGCGA--CCTGTACATC-TATAACA-------ATG---CA--TG---A--GACA-TTA----AA-GGACTGG---TTCAC--TGGGAAATA-TTTACGATGAT----GAGATTCTTGCAAA--agctagaatttgtgtctttgtgtatttatatacaataaagtttgttaaa
gi|10 : tatTGTA-AACAAAC-----ATTTA-TTCGCGcatccttgaaattttctttaatatgaataaaagttggatgttcaaat
gi|3 : tggctaatttattttgcatttcatctgtggtaaagtgggtcatgaatgtatttaagcattattccatgccaatttaccacagatgtgaactggatcacgatgagaaatattcgcaaagatgctcgcgaatctcgtgaattttctcgcaGTA-AACCAAC-----TTTTA-TTCATGGCTAG-TTTAT-TTT-GCAA------TTCACCAGTGGTAT-----ACTG-------GTTAGCAGct
gi|10 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacaGGCT-AATTTAT-TTT-GCAT------TTCATCTGTGGTAA-----AGTG-------GGTC------AT-GAAT-GTAT------TT-AAGCATTATTC--CA--TGCCAATT---TA--CC---ACAGATG-T---------GAACTGG---ATCACGATGAGAAATA-TTCGCAAAGATGCTCGCGAATCTCGTGAA--T---T---acagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatgcgaataaatgttggtttacagtaa
gi|14 : tTCGCTA------TTCAA-TGTGGTAA-----GCTG-------GTTCGCGGT-AG-TAA--TTTCGTGA--TT-AAAAATC-TTT--CA--TAA--ATA---CA--TGTATACAAGTACTTC-------GGACTGG---TTAATAACGATTTGTATTTCGCAAttctcgcacgcgaataaatgtttgtttacact
gi|20 : TCGCGT------CTCACCTCTTGTAA-----ACTG-------GTTTACAGAGAG-TGAT-TTTCGCAA--T
gi|16 : tactttataA------TTTAACTGTGATGA------CGA-------GTTCGCGGCTAC-TAATATTTTGCGA--CC-CAG-GTT--------------------------------AGACA-TTT----AA-AAACAGGAATTTCA-AGCGAGAAATA-TTCGCTATCAT----GCAGTTTTt
gi|15 : -----ACTA-------GTTTGCAGC-ATGTAAT-TTTTGCAG--TC-AAGCCTT-TTT---G--T----AGTAGACA---G---GCAGACA-TTC----AA-GGGCTGG---TTCACGACGAGAGATA-TTCATGACAAT----AAAATTCT
gi|3 : G---ACAGACA-TTG----AA-AGACTGG---TTCCCAATAAGATATA-TTCACGACAAT----GAAATTCTCATGAA--TCTCT---C---AAAATT
gi|11 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacaAGAC--TTC----AAAGGACTGA---TTGGCGGCAAAACATA-TTCGCCACGAC----GAGGTTCCAGTGAACCT---TGC-T---AAAATTttctagcatgcgaataaatgttggtttacagtaa
gi|13 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaTT----AA-GGACTTG---TTCACAGCAATAGATA-TTTGTGATGAT----GAGGTGCTTGCAAACCT---TG--C---AAAAcctcgcgaataaacgttggtgt
gi|8 : tatgactaagattatcttaaacaaattgaaggaatg----AA-GGACTGC---CTCACAGCAAGCAACA-TTCATGATAAC----GAGTTTCTCCTGAAG-C---TCGGC---AAAATTaatttcgcacttgaataaatgttggtttacg
gi|2 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagata----AA-GGACTGG---TTTGTGGTGAGAAATG-TTTGCTATAAG----GAGATTCTTGTGAA--tcttacacacaaataaaagttggtttacattaaa
gi|18 : tattactgtaaaatcaactttaatttgtgttgacttaatctcacaatttgccagtgttaaagttaaacgagtattaatcctaaacaaatacgagagacctaaaaggaccggtttgcggggagaaatacaagagacctaaACTGG---TTCGCAGTGAGAAATA-TTGGCGACAAT----GAAGTTCTCGCGAA--T---ccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATACTGTTAACCAACTTTTATGGTAATCCAGAAGAATTTATTTCACACTTTACCAGTGATGGACTGGATCATTAACAAACACATAAAACTACTAGTTTATGGTGAGAAACATTTGTGATGATAAGGTTCCTGTGAACCTAGCAATAATTTCTCACTCACAAAGAAAAGTTGGTTAGCGGTATTTCCTCA
Unaligned ( gi|21 ): CAACTCATTGCAACTCGGCTAAAAATTAATTAATTAAATGAATTAA
Alignments
lowQualScore : 22222 111 33333333333333333333333 33333333333333
lowQualScore : 3 3 3 22 33333 3 222 444 33 2 66666 8888888 1 1 5 2 55555 33 555555 3 66666666666666666666666 2 22 88888 2 333 55 22 5555 2 0 88888888888888
lowQualScore : . . . .. ..... . ... ... .. . ..... ....... . . . . ..... .. ...... . ....................... . .. ..... . ... .. .. .... . . ..............
lowQualScore : 3 1 1 66 44444 1 999 777 77 3 77777 1111111 4 0 3 7 99999 99 333333 1 33333333333333333333333 5 99 44444 4 999 22 88 3333 5 5 44444444444444
consensus : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G--TTT-ATTTT--CGCA---A--TTCACCTGTGGTA-----AACTG-------GTTCGCGGCGAGTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTT--CA--T----A-TNCAC-G---ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
Reference ( family-14 ) : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G--TTT-ATTTT--CGCA---A--TTCACCTGTGGTA-----AACTG-------GTTCGCGGCGANTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTT--CA--T----A-TNCAC-G---ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
gi|1 : CTGTA-AA-CACACTTTT-ATTCATGACT------------T--CGCA---A--TTCACCAGCAATG-----AACTG-------GCCTGCGGAGACTA-GT-TAT--CC-TGAACAC-GATCATC-TTC--AA--C----A-TACA--G---A-AGACA-TTG----AA-TGTCGGG---TGCACA-GCGAGAAACATCCATGATCAT----GAG-GTTATTAGGAAC-C---T---CAGGAAAATT
gi|10 : caactcgttgcaactcggctaaaaataaataaataaattttaaatgaattgaagtatggagaaggttgaatccctgtaacaataaaggaaggggtggctcaaattcaatataGGCT-AA-TTT-ATTTT---GCA---T--TTCATCTGTGGTA-----AAGTG-------GGTCATG---AATGTAT-TT--------------AAGCATTATTC--CA--TGCCAA-TTTAC-C---ACAGATG-T---------GAACTGG---ATCACG-ATGAGAAATATTCGCAAAGAT----G------CTCGCGAA--T---tctcacatgtgaaaaaaacttgatggtttgtagtaaa
gi|10 : t---ACAAACA-TTT----A------------TTCGCGTGCGAGAAA-ATTCACGA-GATTCGCGAGCATCTTTGCGAA--T---ctcgtgaattttctcgcacgcgaataaatgtttgtttacact
gi|11 : tggctaatttattttgcatttcatctgtggtaaagtgggtcatgaatgtatttaagcattattccatgccaatttaccacagatgtgaactggatcacgatgagaaatAGAC--TTC----AAAGGACTGA---TTGGCG-GCAAAACATATTCGCCACGAC----GAG-GTTCCAGTGAACCT---TGC-T---AAAATTttacact
gi|11 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaA-CCAACGTTT-ATTCGCGAGG-A------ATTTT--AGCA---AGGTTCAC---TGG-A-----ACCTC-------G-TCGTGGCGAATATGT-TTTGCCGCCAA--TC-AGTCCTT-Tcctcgcgaataaacgttggtgt
gi|12 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaagacttcCTGTA-AA-CTAAATTTT-ATTTGCAGAT-GC-TTT-ATTTT---GCA---A--TTCACTTGTGGAT-----AACTG-------GTTCATGGCGAGTA-AT-TTT--CG-CAA--TC-AAGACTT-TCT---G--T----AGTAAACAA---ACAGACA-TTC----AA-GGACTGG---TTCACC-ACAAGAAATATTCACAATGAT----GAG-GTTgt
gi|13 : aTT----AA-GGACTTG---TTCACA-GCAATAGATATTTGTGATGAT----GAG-GTGCTTGCAAACCT---TG--C---AAAA
gi|14 : tatgactaagattatcttaaacaaattgaaggaatgT--CGCT---A--TTCAA-TGTGGTA-----AGCTG-------GTTCGCGGT-AGTA-A--TTT--CG-TGA--TT-AAAAATC-TTT--CA--TAA--A-TACAT-GTATACAAGTACTTC-------GGACTGG---TTaatttcgcacttgaataaatgttggtttacg
gi|15 : ACTA-------GTTTGCAGCATGTA-AT-TTT--TG-CAG--TC-AAGCCTT-TTTG-TAG-T----A-GACA--G---GCAGACA-TTC----AA-GGGCTGG---TTCACG-ACGAGAGATATTCATGACAAT----AAA-ATTCTaataacgatttgtatttcgcaa
gi|16 : ---A--TTTAACTGTGATG-----A-CGA-------GTTCGCGGCTACTA-ATATTT--TG-CGA--CC-CAG-GTT-----------------------------AGACA-TTT----AA-AAACAGGAATTTCA-A-GCGAGAAATATTCGCTATCAT----GCA-GTTTT
gi|17 : CTGTA-AA-CCAACTCTT-ATT-GCGGCT-A--CTTCATTTT---GCT---A--TTTACACGTGATG-----TACTG-------GTTCATGGTGAGTA-AT-TTT--
gi|18 : ACTGG---TTCGCA-GTGAGAAATATTGGCGACAAT----GAA-GTTCTCGCGAA--T---tcattatatatgacttttggctgtaaca
gi|19 : agggccCTGCA-AA-CCTATTTTT-ATTCGCGGC-------------------G---A--TTAACCTGTGGTA-----AAATG-------GTTCGCGATGAGTA-AT-TTT--CA-CGA--TC-GAGCCTT-TTT--Ccttgtgaaattttcttacaggcgaataaatgtgggttgacagttttcg
gi|2 : attaCTGTA-AAATCAACTTTA-ATTTGTG-TT-GA-CTT-AATCT--CACA---A--TTTGCCAGTGTTA-----AA----------GTTAA--ACGAGTA-----TT------AA--TC---------CTA--AA--C----A-AATAC-G---AGAGACC-TAA----AA-GGACCGG---TTTGCG-GGGAGAAATA
gi|2 : tattaAC-A---AGAGACC-TAA----AA-GGACTGG---TTTGTG-GTGAGAAATGTTTGCTATAAG----GAG-ATTCTTGTGAA--caagagacctaaaaggactggtttgtggtgagaaatgtttgctataaggagattcttgtgaaccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|20 : tattactgtaaaatcaactttaatttgtgttgacttaatctcacaatttgccagtgttaaagttaaacgagtattaatcctaaacaaatacgagagacctaaaaggaccggtttgcggggagaaat--TTT-ATAT---CGCG---T--CTCACCTCTTGTA-----AACTG-------GTTTACAGAGAGTG-AT-TTT--CG-CAA--Tccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|3 : tacGTA-AA-CCAACTTTT-ATTCATGGCTAG--TTT-ATTTT---GCA---A--TTCACCAGTGGTA-----TACTG-------GTTAGCAGt
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaataca-G---ACAGACA-TTG----AA-AGACTGG---TTCCCA-ATAAGATATATTCACGACAAT----GAA-ATTCTCATGAA--TCTCT---C---AAAATTacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatgcgaataaatgttggtttacagtaa
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacaCTGTA-AA-CCAACATTT-ATTCGCttctagcatgcgaataaatgttggtttacagtaa
gi|4 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatCTGTC-AA-CCAACTTTTCATTTA--ATT-AA-CTT-ATTT---CATA---A--TTTACCAGTGTTA-----AACTACCAGATAATTTGCAGTGACGT-AT-TTT--CA-TGA--CT-GAAATAA-TCT--CAAGC----A-AGTAC-A---AGAGACA-TTTTTAAAA-AGACTGG---TTCGCA-GCAAGAAATATTCACGACAAC----AAG-GTTCTTGTGAA--taa
gi|5 : gtgaatcaaatgaaaaatttaaataatgTGTATAC-CCAACTTTT-ATTTCCAA-T-GTCTTT-ATTTTGCTACATGTA--TTTATCAGTGATGACTTTAATTA-------GTTTATGGCAGCTG-AT-TTT--TG-CGA--CCTGTACATC-TATAACA-------A-TGCAT-G-----AGACA-TTA----AA-GGACTGG---TTCAC---TGGGAAATATTTACGATGAT----GAG-ATTCTTGCAAA--cctcacaaaaagcaggtctggtttacagta
gi|6 : tatTGTA-AA-CCAACTTTG-GTTCATGCCT-G--TTT-TATTT--CACA---A--TTCACCTGTGGTA-----AACTG-------GTTCACAGTGAGTA-AT-TT----G-CAA--TT-GAGTCTT-TTT--CAT-T----A-TCTAT-G---ACAGACT-TTC----AA-GGACTGG---TTCGCA-ATGAGAAATATTTGTGATGAT----GAG-GTTCTTACAAG--T---catccttgaaattttctttaatatgaataaaagttggatgttcaaat
gi|8 : tat----AA-GGACTGC---CTCACA-GCAAGCAACATTCATGATAAC----GAG-TTTCTCCTGAAG-C---TCGGC---AAAATTagctagaatttgtgtctttgtgtatttatatacaataaagtttgttaaa
gi|8 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagataTGTA-AA-CCAACTTTT-ATTTGTGtcttacacacaaataaaagttggtttacattaaa
gi|9 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagataaaggactgcctcacagcaagcaacattcatgataacgagtttctcctgaagctcggcaaaatttcttacaCTGTA-AA-CCAACATTT-ATTCGCGGCT-G--TTT-GTTTT--CGCT---A--TTCACCTGTGGTA-----AACTG-------GTTCGCGGTGATTA-AT-TTT--TG-CGA--TC-GAGCGTT-TTT--CA--T----A-TTTAT-G---ACAGACA-TTC----AA-GGACTGG---TTCACA-ACGATAAATATTCGCGACAAT----GCG-GTTCTCGCGAA--T---T---C---AAAATTttaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATACTGTTAACCAACTTTTATGGTAATCCAGAAGAATTTATTTCACACTTTACCAGTGATGGACTGGATCATTAACAAACACATAAAACTACTAGTTTATGGTGAGAAACATTTGTGATGATAAGGTTCCTGTGAACCTAGCAATAATTTCTCACTCACAAAGAAAAGTTGGTTAGCGGTATTTCCTCA
Unaligned ( gi|21 ): CAACTCATTGCAACTCGGCTAAAAATTAATTAATTAAATGAATTAA
Alignments
lowQualScore : 222222 111 33333333333333333333333 33333333333333
lowQualScore : 3 3 3 22 333333 3 222 444 33 2 66666 8888888 1 2 5 2 55555 33 555555 3 66666666666666666666666 4 22 88888 2 333 55 22 5555 2 0 88888888888888
lowQualScore : . . . .. ...... . ... ... .. . ..... ....... . . . . ..... .. ...... . ....................... . .. ..... . ... .. .. .... . . ..............
lowQualScore : 3 1 1 66 444444 1 999 777 77 3 22222 1111111 4 7 3 7 99999 99 333333 1 33333333333333333333333 3 99 44444 4 999 22 88 3333 5 5 44444444444444
consensus : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G-T--TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTT--CA--T----A-TNCAC-G---ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
Reference ( family-14 ) : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G-T--TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTT--CA--T----A-TNCAC-G---ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
gi|1 : CTGTA-AA-CACACTTTT-ATTCATGACT-------------T--CGCA---A--TTCACCAGCAATGA-----ACTG-------GCCTGCGGAGA-CTA-GT-TAT--CC-TGAACAC-GATCATC-TTC--AA--C----A-TACA--G---A-AGACA-TTG----AA-TGTCGGG---TGCACA-GCGAGAAACATCCATGATCAT----GAG-GTTATTAGGAAC-C---T---CAGGAAAATT
gi|10 : caactcgttgcaactcggctaaaaataaataaataaattttaaatgaattgaagtatggagaaggttgaatccctgtaacaataaaggaaggggtggctcaaattcaatataGGCT-AAT--TT-ATTTT---GCA---T--TTCATCTGTGGTAA-----AGTG-------GGTCATG---A-ATGTAT-TT--------------AAGCATTATTC--CA--TGCCAA-TTTAC-C---ACAGATG-T---------GAACTGG---ATCACG-ATGAGAAATATTCGCAAAGAT----G------CTCGCGAA--T---tctcacatgtgaaaaaaacttgatggtttgtagtaaa
gi|10 : t---ACAAACA-TTT----A------------TTCGCGTGCGAGAAA-ATTCACGA-GATTCGCGAGCATCTTTGCGAA--T---ctcgtgaattttctcgcacgcgaataaatgtttgtttacact
gi|11 : tggctaatttattttgcatttcatctgtggtaaagtgggtcatgaatgtatttaagcattattccatgccaatttaccacagatgtgaactggatcacgatgagaaatAGAC--TTC----AAAGGACTGA---TTGGCG-GCAAAACATATTCGCCACGAC----GAG-GTTCCAGTGAACCT---TGC-T---AAAATTttacact
gi|11 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaA-CCAACGTTT-ATTCGCGAGG-A-------ATTTT--AGCA---AGGTTCAC---TGG-AA-----CCTC-------G-TCGTGGCGA-ATATGT-TTTGCCGCCAA--TC-AGTCCTT-Tcctcgcgaataaacgttggtgt
gi|12 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaagacttcCTGTA-AA-CTAAATTTT-ATTTGCAGAT-GCT--TT-ATTTT---GCA---A--TTCACTTGTGGATA-----ACTG-------GTTCATGGCGA-GTA-AT-TTT--CG-CAA--TC-AAGACTT-TCT---G--T----AGTAAACAA---ACAGACA-TTC----AA-GGACTGG---TTCACC-ACAAGAAATATTCACAATGAT----GAG-GTTgt
gi|13 : aTT----AA-GGACTTG---TTCACA-GCAATAGATATTTGTGATGAT----GAG-GTGCTTGCAAACCT---TG--C---AAAA
gi|14 : tatgactaagattatcttaaacaaattgaaggaatgT--CGCT---A--TTCAA-TGTGGTAA-----GCTG-------GTTCGCGGT-A-GTA-A--TTT--CG-TGA--TT-AAAAATC-TTT--CA--TAA--A-TACAT-GTATACAAGTACTTC-------GGACTGG---TTaatttcgcacttgaataaatgttggtttacg
gi|15 : -----ACTA-------GTTTGCAGCAT-GTA-AT-TTT--TG-CAG--TC-AAGCCTT-TTTG-TAG-T----A-GACA--G---GCAGACA-TTC----AA-GGGCTGG---TTCACG-ACGAGAGATATTCATGACAAT----AAA-ATTCTaataacgatttgtatttcgcaa
gi|16 : ---A--TTTAACTGTGATGA------CGA-------GTTCGCGGCTA-CTA-ATATTT--TG-CGA--CC-CAG-GTT-----------------------------AGACA-TTT----AA-AAACAGGAATTTCA-A-GCGAGAAATATTCGCTATCAT----GCA-GTTTT
gi|17 : CTGTA-AA-CCAACTCTT-ATT-GCGGCT-A-C--TTCATTTT---GCT---A--TTTACACGTGATGT-----ACTG-------GTTCATGGTGA-GTA-AT-TTT--
gi|18 : ACTGG---TTCGCA-GTGAGAAATATTGGCGACAAT----GAA-GTTCTCGCGAA--T---tcattatatatgacttttggctgtaaca
gi|19 : agggccCTGCA-AA-CCTATTTTT-ATTCGCGGC--------------------G---A--TTAACCTGTGGTAA-----AATG-------GTTCGCGATGA-GTA-AT-TTT--CA-CGA--TC-GAGCCTT-TTT--Ccttgtgaaattttcttacaggcgaataaatgtgggttgacagttttcg
gi|2 : attaCTGTA-AAATCAACTTTA-ATTTGTG-TT-GAC--TT-AATCT--CACA---A--TTTGCCAGTGTTAA-----A----------GTTAA--ACGA-GTA-----TT------AA--TC---------CTA--AA--C----A-AATAC-G---AGAGACC-TAA----AA-GGACCGG---TTTGCG-GGGAGAAATA
gi|2 : tattaAC-A---AGAGACC-TAA----AA-GGACTGG---TTTGTG-GTGAGAAATGTTTGCTATAAG----GAG-ATTCTTGTGAA--caagagacctaaaaggactggtttgtggtgagaaatgtttgctataaggagattcttgtgaaccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|20 : tattactgtaaaatcaactttaatttgtgttgacttaatctcacaatttgccagtgttaaagttaaacgagtattaatcctaaacaaatacgagagacctaaaaggaccggtttgcggggagaaat-T--TT-ATAT---CGCG---T--CTCACCTCTTGTAA-----ACTG-------GTTTACAGAGA-GTG-AT-TTT--CG-CAA--Tccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|3 : tacGTA-AA-CCAACTTTT-ATTCATGGCTAG-T--TT-ATTTT---GCA---A--TTCACCAGTGGTAT-----ACTG-------GTTAGCAGt
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaataca-G---ACAGACA-TTG----AA-AGACTGG---TTCCCA-ATAAGATATATTCACGACAAT----GAA-ATTCTCATGAA--TCTCT---C---AAAATTacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatgcgaataaatgttggtttacagtaa
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacaCTGTA-AA-CCAACATTT-ATTCGCttctagcatgcgaataaatgttggtttacagtaa
gi|4 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatCTGTC-AA-CCAACTTTTCATTTA--ATT-AAC--TT-ATTT---CATA---A--TTTACCAGTGTTAA-----ACTACCAGATAATTTGCAGTGACGTA--T-TTT--CA-TGA--CT-GAAATAA-TCT--CAAGC----A-AGTAC-A---AGAGACA-TTTTTAAAA-AGACTGG---TTCGCA-GCAAGAAATATTCACGACAAC----AAG-GTTCTTGTGAA--taa
gi|5 : gtgaatcaaatgaaaaatttaaataatgTGTATAC-CCAACTTTT-ATTTCCAA-T-G-TCTTT-ATTTTGCTACATGTA--TTTATCAGTGATGACTTTAATTA-------GTTTATGGCAG-CTG-AT-TTT--TG-CGA--CCTGTACATC-TATAACA-------A-TGCAT-G---A--GACA-TTA----AA-GGACTGG---TTCAC---TGGGAAATATTTACGATGAT----GAG-ATTCTTGCAAA--cctcacaaaaagcaggtctggtttacagta
gi|6 : tatTGTA-AA-CCAACTTTG-GTTCATGCCT-G-T--TT-TATTT--CACA---A--TTCACCTGTGGTAA-----ACTG-------GTTCACAGTGA-GTA-AT-TT----G-CAA--TT-GAGTCTT-TTT--CAT-T----A-TCTAT-G---ACAGACT-TTC----AA-GGACTGG---TTCGCA-ATGAGAAATATTTGTGATGAT----GAG-GTTCTTACAAG--T---catccttgaaattttctttaatatgaataaaagttggatgttcaaat
gi|8 : tat----AA-GGACTGC---CTCACA-GCAAGCAACATTCATGATAAC----GAG-TTTCTCCTGAAG-C---TCGGC---AAAATTagctagaatttgtgtctttgtgtatttatatacaataaagtttgttaaa
gi|8 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagataTGTA-AA-CCAACTTTT-ATTTGTGtcttacacacaaataaaagttggtttacattaaa
gi|9 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagataaaggactgcctcacagcaagcaacattcatgataacgagtttctcctgaagctcggcaaaatttcttacaCTGTA-AA-CCAACATTT-ATTCGCGGCT-G-T--TT-GTTTT--CGCT---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGTGA-TTA-AT-TTT--TG-CGA--TC-GAGCGTT-TTT--CA--T----A-TTTAT-G---ACAGACA-TTC----AA-GGACTGG---TTCACA-ACGATAAATATTCGCGACAAT----GCG-GTTCTCGCGAA--T---T---C---AAAATTttaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATACTGTTAACCAACTTTTATGGTAATCCAGAAGAATTTATTTCACACTTTACCAGTGATGGACTGGATCATTAACAAACACATAAAACTACTAGTTTATGGTGAGAAACATTTGTGATGATAAGGTTCCTGTGAACCTAGCAATAATTTCTCACTCACAAAGAAAAGTTGGTTAGCGGTATTTCCTCA
Unaligned ( gi|21 ): CAACTCATTGCAACTCGGCTAAAAATTAATTAATTAAATGAATTAA
Alignments
lowQualScore : 222222 111 33333333333333333333333 33333333333333
lowQualScore : 3 3 3 22 333333 3 222 444 33 2 66666 8888888 1 2 5 2 55555 33 555555 3 66666666666666666666666 4 22 88888 2 333 55 22 5555 2 0 88888888888888
lowQualScore : . . . .. ...... . ... ... .. . ..... ....... . . . . ..... .. ...... . ....................... . .. ..... . ... .. .. .... . . ..............
lowQualScore : 3 1 1 66 444444 1 999 777 77 3 22222 1111111 4 7 3 7 99999 99 333333 1 33333333333333333333333 3 99 44444 4 999 22 88 3333 5 5 44444444444444
consensus : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G-T--TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTT--CA--T----A-TNCAC-G---ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
Reference ( family-14 ) : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G-T--TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTT--CA--T----A-TNCAC-G---ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
gi|1 : CTGTA-AA-CACACTTTT-ATTCATGACT-------------T--CGCA---A--TTCACCAGCAATGA-----ACTG-------GCCTGCGGAGA-CTA-GT-TAT--CC-TGAACAC-GATCATC-TTC--AA--C----A-TACA--G---A-AGACA-TTG----AA-TGTCGGG---TGCACA-GCGAGAAACATCCATGATCAT----GAG-GTTATTAGGAAC-C---T---CAGGAAAATT
gi|10 : caactcgttgcaactcggctaaaaataaataaataaattttaaatgaattgaagtatggagaaggttgaatccctgtaacaataaaggaaggggtggctcaaattcaatataGGCT-AAT--TT-ATTTT---GCA---T--TTCATCTGTGGTAA-----AGTG-------GGTCATG---A-ATGTAT-TT--------------AAGCATTATTC--CA--TGCCAA-TTTAC-C---ACAGATG-T---------GAACTGG---ATCACG-ATGAGAAATATTCGCAAAGAT----G------CTCGCGAA--T---tctcacatgtgaaaaaaacttgatggtttgtagtaaa
gi|10 : t---ACAAACA-TTT----A------------TTCGCGTGCGAGAAA-ATTCACGA-GATTCGCGAGCATCTTTGCGAA--T---ctcgtgaattttctcgcacgcgaataaatgtttgtttacact
gi|11 : tggctaatttattttgcatttcatctgtggtaaagtgggtcatgaatgtatttaagcattattccatgccaatttaccacagatgtgaactggatcacgatgagaaatAGAC--TTC----AAAGGACTGA---TTGGCG-GCAAAACATATTCGCCACGAC----GAG-GTTCCAGTGAACCT---TGC-T---AAAATTttacact
gi|11 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaA-CCAACGTTT-ATTCGCGAGG-A-------ATTTT--AGCA---AGGTTCAC---TGG-AA-----CCTC-------G-TCGTGGCGA-ATATGT-TTTGCCGCCAA--TC-AGTCCTT-Tcctcgcgaataaacgttggtgt
gi|12 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaagacttcCTGTA-AA-CTAAATTTT-ATTTGCAGAT-GCT--TT-ATTTT---GCA---A--TTCACTTGTGGATA-----ACTG-------GTTCATGGCGA-GTA-AT-TTT--CG-CAA--TC-AAGACTT-TCT---G--T----AGTAAACAA---ACAGACA-TTC----AA-GGACTGG---TTCACC-ACAAGAAATATTCACAATGAT----GAG-GTTgt
gi|13 : aTT----AA-GGACTTG---TTCACA-GCAATAGATATTTGTGATGAT----GAG-GTGCTTGCAAACCT---TG--C---AAAA
gi|14 : tatgactaagattatcttaaacaaattgaaggaatgT--CGCT---A--TTCAA-TGTGGTAA-----GCTG-------GTTCGCGGT-A-GTA-A--TTT--CG-TGA--TT-AAAAATC-TTT--CA--TAA--A-TACAT-GTATACAAGTACTTC-------GGACTGG---TTaatttcgcacttgaataaatgttggtttacg
gi|15 : -----ACTA-------GTTTGCAGCAT-GTA-AT-TTT--TG-CAG--TC-AAGCCTT-TTTG-TAG-T----A-GACA--G---GCAGACA-TTC----AA-GGGCTGG---TTCACG-ACGAGAGATATTCATGACAAT----AAA-ATTCTaataacgatttgtatttcgcaa
gi|16 : ---A--TTTAACTGTGATGA------CGA-------GTTCGCGGCTA-CTA-ATATTT--TG-CGA--CC-CAG-GTT-----------------------------AGACA-TTT----AA-AAACAGGAATTTCA-A-GCGAGAAATATTCGCTATCAT----GCA-GTTTT
gi|17 : CTGTA-AA-CCAACTCTT-ATT-GCGGCT-A-C--TTCATTTT---GCT---A--TTTACACGTGATGT-----ACTG-------GTTCATGGTGA-GTA-AT-TTT--
gi|18 : ACTGG---TTCGCA-GTGAGAAATATTGGCGACAAT----GAA-GTTCTCGCGAA--T---tcattatatatgacttttggctgtaaca
gi|19 : agggccCTGCA-AA-CCTATTTTT-ATTCGCGGC--------------------G---A--TTAACCTGTGGTAA-----AATG-------GTTCGCGATGA-GTA-AT-TTT--CA-CGA--TC-GAGCCTT-TTT--Ccttgtgaaattttcttacaggcgaataaatgtgggttgacagttttcg
gi|2 : attaCTGTA-AAATCAACTTTA-ATTTGTG-TT-GAC--TT-AATCT--CACA---A--TTTGCCAGTGTTAA-----A----------GTTAA--ACGA-GTA-----TT------AA--TC---------CTA--AA--C----A-AATAC-G---AGAGACC-TAA----AA-GGACCGG---TTTGCG-GGGAGAAATA
gi|2 : tattaAC-A---AGAGACC-TAA----AA-GGACTGG---TTTGTG-GTGAGAAATGTTTGCTATAAG----GAG-ATTCTTGTGAA--caagagacctaaaaggactggtttgtggtgagaaatgtttgctataaggagattcttgtgaaccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|20 : tattactgtaaaatcaactttaatttgtgttgacttaatctcacaatttgccagtgttaaagttaaacgagtattaatcctaaacaaatacgagagacctaaaaggaccggtttgcggggagaaat-T--TT-ATAT---CGCG---T--CTCACCTCTTGTAA-----ACTG-------GTTTACAGAGA-GTG-AT-TTT--CG-CAA--Tccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|3 : tacGTA-AA-CCAACTTTT-ATTCATGGCTAG-T--TT-ATTTT---GCA---A--TTCACCAGTGGTAT-----ACTG-------GTTAGCAGt
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaataca-G---ACAGACA-TTG----AA-AGACTGG---TTCCCA-ATAAGATATATTCACGACAAT----GAA-ATTCTCATGAA--TCTCT---C---AAAATTacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatgcgaataaatgttggtttacagtaa
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacaCTGTA-AA-CCAACATTT-ATTCGCttctagcatgcgaataaatgttggtttacagtaa
gi|4 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatCTGTC-AA-CCAACTTTTCATTTA--ATT-AAC--TT-ATTT---CATA---A--TTTACCAGTGTTAA-----ACTACCAGATAATTTGCAGTGACGTA--T-TTT--CA-TGA--CT-GAAATAA-TCT--CAAGC----A-AGTAC-A---AGAGACA-TTTTTAAAA-AGACTGG---TTCGCA-GCAAGAAATATTCACGACAAC----AAG-GTTCTTGTGAA--taa
gi|5 : gtgaatcaaatgaaaaatttaaataatgTGTATAC-CCAACTTTT-ATTTCCAA-T-G-TCTTT-ATTTTGCTACATGTA--TTTATCAGTGATGACTTTAATTA-------GTTTATGGCAG-CTG-AT-TTT--TG-CGA--CCTGTACATC-TATAACA-------A-TGCAT-G---A--GACA-TTA----AA-GGACTGG---TTCAC---TGGGAAATATTTACGATGAT----GAG-ATTCTTGCAAA--cctcacaaaaagcaggtctggtttacagta
gi|6 : tatTGTA-AA-CCAACTTTG-GTTCATGCCT-G-T--TT-TATTT--CACA---A--TTCACCTGTGGTAA-----ACTG-------GTTCACAGTGA-GTA-AT-TT----G-CAA--TT-GAGTCTT-TTT--CAT-T----A-TCTAT-G---ACAGACT-TTC----AA-GGACTGG---TTCGCA-ATGAGAAATATTTGTGATGAT----GAG-GTTCTTACAAG--T---catccttgaaattttctttaatatgaataaaagttggatgttcaaat
gi|8 : tat----AA-GGACTGC---CTCACA-GCAAGCAACATTCATGATAAC----GAG-TTTCTCCTGAAG-C---TCGGC---AAAATTagctagaatttgtgtctttgtgtatttatatacaataaagtttgttaaa
gi|8 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagataTGTA-AA-CCAACTTTT-ATTTGTGtcttacacacaaataaaagttggtttacattaaa
gi|9 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagataaaggactgcctcacagcaagcaacattcatgataacgagtttctcctgaagctcggcaaaatttcttacaCTGTA-AA-CCAACATTT-ATTCGCGGCT-G-T--TT-GTTTT--CGCT---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGTGA-TTA-AT-TTT--TG-CGA--TC-GAGCGTT-TTT--CA--T----A-TTTAT-G---ACAGACA-TTC----AA-GGACTGG---TTCACA-ACGATAAATATTCGCGACAAT----GCG-GTTCTCGCGAA--T---T---C---AAAATTttaaa
blockSeqs : T A C GC GTCT C GCT TGT GG T CTTTA CCAGATA C C T A GCCGC . TGTACA A CATAAATACATGTAT C AC TTTAA A AAT GT AG TCGC C CCTTGCT
blockSeqs : . . . AG AAT . A . . T . . C . T . CG . AAGCA . CATGCCAATTTACC C G T . . G CG . . GCTCGGC
blockSeqs : . . . GA GCT . C . . T . . T . . . CG . AGTCC . CAAGCAAGTACA C A C . . G TG . . CCTTGC
blockSeqs : . . . GC GAC . C . . T . . C . . . TG . AAGAC . GTAGTAAACAA C A C . . C TG . . TCTCTC
blockSeqs : . . . GC AGT . C . . C . . C . . . TG . AAAAA . GTAGTAGACAG C A T . . A CA . . TTC
blockSeqs : . . . GC AAC . C . . T . . T . . . CA . AAGCC . AACAATGCATG G A C . . G TC . .
blockSeqs : . . . AT AC . C . . A . . T . . . CG . GAGCC . CATTATCTATG G C C . . A CA . .
blockSeqs : . . . CC GT . C . . T . . C . . . CA . GAAAT . AACAAATACG C C T . . A TA . .
blockSeqs : . . . GC GT . . . . A . . A . . . TG . GAGTC . CATATTTATG G A A . . G CA . .
blockSeqs : . . . T A . . . . A . . T . . . TG . GAGCG . . C A A . . G CA . .
blockSeqs : . . . A . . . . . A . . C . . . G . CAGG . C A G . . A TG . .
blockSeqs : . . . . . . T . . T . . . . . . . . T A . . A TG . .
blockSeqs : . . . T . . T . . . . . . A C . . A TA . .
blockSeqs : . . . . . . . . . . C . . A CA . .
blockSeqs : . . . . . A G . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : GT**** ** CGTAAATACG*************
originalCons : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G-T--TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTT--CA--T----A-TNCAC-G---ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
finalCons : CTGTA-AA-CCAACTTTT-ATTCGCGGCTGT----TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC-GAGCNTT-TTTCGTAAATACG-------------ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATACTGTTAACCAACTTTTATGGTAATCCAGAAGAATTTATTTCACACTTTACCAGTGATGGACTGGATCATTAACAAACACATAAAACTACTAGTTTATGGTGAGAAACATTTGTGATGATAAGGTTCCTGTGAACCTAGCAATAATTTCTCACTCACAAAGAAAAGTTGGTTAGCGGTATTTCCTCA
Unaligned ( gi|21 ): CAACTCATTGCAACTCGGCTAAAAATTAATTAATTAAATGAATTAA
Alignments
lowQualScore : 222222 111 33333333333333333333333333333333333333333333 33333333333333
lowQualScore : 3 3 3 22 333333 3 222 444 33 2 66666 8888888 1 2 5 2 77777 33 66666666666666666666666666666666666666666666 2 99999 2 333 55 22 5555 2 0 88888888888888
lowQualScore : . . . .. ...... . ... ... .. . ..... ....... . . . . ..... .. ............................................ . ..... . ... .. .. .... . . ..............
lowQualScore : 3 1 1 66 444444 1 999 777 77 3 22222 1111111 4 7 0 5 55555 77 66666666666666666666666666666666666666666666 5 11111 4 999 22 88 3333 5 5 44444444444444
consensus : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G-T--TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC--GAG-CNT----TTT-TC---G--TAA--AT--ACG-----ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
Reference ( family-14 ) : CTGTA-AA-CCAACTTTT-ATTCGCGGCT-G-T--TT-ATTTT--CGCA---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGCGA-GTA-AT-TTT--CG-CGA--TC--GAG-CNT----TTT-TC---G--TAA--AT--ACG-----ACAGACA-TTC----AA-GGACTGG---TTCGCG-GCGAGAAATATTCGCGACGAT----GAG-GTTCTCGCGAA--T---T---C---AAAATT
gi|1 : CTGTA-AA-CACACTTTT-ATTCATGACT-------------T--CGCA---A--TTCACCAGCAATGA-----ACTG-------GCCTGCGGAGA-CTA-GT-TAT--CC-TGAACAC--GAT-CAT----CTT---------CAAC-AT--ACA-----GAAGACA-TTG----AA-TGTCGGG---TGCACA-GCGAGAAACATCCATGATCAT----GAG-GTTATTAGGAAC-C---T---CAGGAAAATT
gi|10 : caactcgttgcaactcggctaaaaataaataaataaattttaaatgaattgaagtatggagaaggttgaatccctgtaacaataaaggaaggggtggctcaaattcaatataGGCT-AAT--TT-ATTTT---GCA---T--TTCATCTGTGGTAA-----AGTG-------GGTCATG---A-ATGTAT-TT---------------AAG-CAT----TAT-TCCATG--CCA--ATTTACC-----ACAGATG-T---------GAACTGG---ATCACG-ATGAGAAATATTCGCAAAGAT----G------CTCGCGAA--T---tctcacatgtgaaaaaaacttgatggtttgtagtaaa
gi|10 : t-----ACAAACA-TTT----A------------TTCGCGTGCGAGAAA-ATTCACGA-GATTCGCGAGCATCTTTGCGAA--T---ctcgtgaattttctcgcacgcgaataaatgtttgtttacact
gi|11 : tggctaatttattttgcatttcatctgtggtaaagtgggtcatgaatgtatttaagcattattccatgccaatttaccacagatgtgaactggatcacgatgagaaat-CAT----TTA-TC---T--TAA--AC--AAGTAAA-AAAGAC--TTC----AAAGGACTGA---TTGGCG-GCAAAACATATTCGCCACGAC----GAG-GTTCCAGTGAACCT---TGC-T---AAAATTttacact
gi|11 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatA-CCAACGTTT-ATTCGCGAGG-A-------ATTTT--AGCA---AGGTTCAC---TGG-AA-----CCTC-------G-TCGTGGCGA-ATATGT-TTTGCCGCCAA--TC--AGT-CCT----TTcctcgcgaataaacgttggtgt
gi|12 : caactttaattcctgacgactttattttgctatgtacaagtgatgatccatttatcatttatcttaaacaagtaaaaaagacttcCTGTA-AA-CTAAATTTT-ATTTGCAGAT-GCT--TT-ATTTT---GCA---A--TTCACTTGTGGATA-----ACTG-------GTTCATGGCGA-GTA-AT-TTT--CG-CAA--TC--AAGACTT----TCTGTA---G--TAA--AC--A-A-----ACAGACA-TTC----AA-GGACTGG---TTCACC-ACAAGAAATATTCACAATGAT----GAG-GTTgt
gi|13 : aTT----AA-GGACTTG---TTCACA-GCAATAGATATTTGTGATGAT----GAG-GTGCTTGCAAACCT---TG--C---AAAA
gi|14 : tatgactaagattatcttaaacaaattgaaggaatgT--CGCT---A--TTCAA-TGTGGTAA-----GCTG-------GTTCGCGGT-A-GTA-A--TTT--CG-TGA--TT--AAA-AAT----CTT-TC---A--TAA--AT--ACATGTATACAAGTACTTC-------GGACTGG---TTaatttcgcacttgaataaatgttggtttacg
gi|15 : -----ACTA-------GTTTGCAGCAT-GTA-AT-TTT--TG-CAG--TC--AAG-CCT----TTT-TGTA-G--TAG--AC--A-G-----GCAGACA-TTC----AA-GGGCTGG---TTCACG-ACGAGAGATATTCATGACAAT----AAA-ATTCTaataacgatttgtatttcgcaa
gi|16 : ---A--TTTAACTGTGATGA------CGA-------GTTCGCGGCTA-CTA-ATATTT--TG-CGA--CC--CAG--GT----T------------------------------AGACA-TTT----AA-AAACAGGAATTTCA-A-GCGAGAAATATTCGCTATCAT----GCA-GTTTT
gi|17 : CTGTA-AA-CCAACTCTT-ATT-GCGGCT-A-C--TTCATTTT---GCT---A--TTTACACGTGATGT-----ACTG-------GTTCATGGTGA-GTA-AT-TTT--
gi|18 : ACTGG---TTCGCA-GTGAGAAATATTGGCGACAAT----GAA-GTTCTCGCGAA--T---tcattatatatgacttttggctgtaaca
gi|19 : agggccCTGCA-AA-CCTATTTTT-ATTCGCGGC--------------------G---A--TTAACCTGTGGTAA-----AATG-------GTTCGCGATGA-GTA-AT-TTT--CA-CGA--TC--GAG-CCT----TTT-TC---cttgtgaaattttcttacaggcgaataaatgtgggttgacagttttcg
gi|2 : attaCTGTA-AAATCAACTTTA-ATTTGTG-TT-GAC--TT-AATCT--CACA---A--TTTGCCAGTGTTAA-----A----------GTTAA--ACGA-GTA-----TT------AA--TCCTAAA-C-------------------AA--AT--ACG-----AGAGACC-TAA----AA-GGACCGG---TTTGCG-GGGAGAAATA
gi|2 : tattaAA--AT--ACA-----AGAGACC-TAA----AA-GGACTGG---TTTGTG-GTGAGAAATGTTTGCTATAAG----GAG-ATTCTTGTGAA--caagagacctaaaaggactggtttgtggtgagaaatgtttgctataaggagattcttgtgaaccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|20 : tattactgtaaaatcaactttaatttgtgttgacttaatctcacaatttgccagtgttaaagttaaacgagtattaatcctaaacaaatacgagagacctaaaaggaccggtttgcggggag-T--TT-ATAT---CGCG---T--CTCACCTCTTGTAA-----ACTG-------GTTTACAGAGA-GTG-AT-TTT--CG-CAA--Tccatatgaaagttcctcacatcaaataaaatttggtttacagtatttttgcttgt
gi|3 : tacGTA-AA-CCAACTTTT-ATTCATGGCTAG-T--TT-ATTTT---GCA---A--TTCACCAGTGGTAT-----ACTG-------GTTAGCAGt
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacaG-----ACAGACA-TTG----AA-AGACTGG---TTCCCA-ATAAGATATATTCACGACAAT----GAA-ATTCTCATGAA--TCTCT---C---AAAATTacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatgcgaataaatgttggtttacagtaa
gi|3 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacaCTGTA-AA-CCAACATTT-ATTCGCttctagcatgcgaataaatgttggtttacagtaa
gi|4 : aaagataaatcccatgaattttcaatgaggatgtgaagttcgaaaacaaaacatctcagctttaatacagtaaaccaacttttattcatggctagtttattttgcaattcaccagtggtatactggttagcagacagacagacattgaaagactggttcccaataagatatattcacgacaatgaaattctcatgaatctctcaaaattttctagcatCTGTC-AA-CCAACTTTTCATTTA--ATT-AAC--TT-ATTT---CATA---A--TTTACCAGTGTTAA-----ACTACCAGATAATTTGCAGTGACGTA--T-TTT--CA-TGA--CT--GAA-ATA----ATC-TCAA-G--CAA--GT--ACA-----AGAGACA-TTTTTAAAA-AGACTGG---TTCGCA-GCAAGAAATATTCACGACAAC----AAG-GTTCTTGTGAA--taa
gi|5 : gtgaatcaaatgaaaaatttaaataatgTGTATAC-CCAACTTTT-ATTTCCAA-T-G-TCTTT-ATTTTGCTACATGTA--TTTATCAGTGATGACTTTAATTA-------GTTTATGGCAG-CTG-AT-TTT--TG-CGA--CCT-GTA-CAT----CT-------A--TAACAAT--GCA-----TGAGACA-TTA----AA-GGACTGG---TTCAC---TGGGAAATATTTACGATGAT----GAG-ATTCTTGCAAA--cctcacaaaaagcaggtctggtttacagta
gi|6 : tatTGTA-AA-CCAACTTTG-GTTCATGCCT-G-T--TT-TATTT--CACA---A--TTCACCTGTGGTAA-----ACTG-------GTTCACAGTGA-GTA-AT-TT----G-CAA--TT--GAG-TCT----TTT-TC---AT-TAT--CT--ATG-----ACAGACT-TTC----AA-GGACTGG---TTCGCA-ATGAGAAATATTTGTGATGAT----GAG-GTTCTTACAAG--T---catccttgaaattttctttaatatgaataaaagttggatgttcaaat
gi|8 : tatTA-AT-TTT--C--TTA--TC--CAA-GATAATCTTT-TA---GAACAA--AT--GCG-------AGATA--------AA-GGACTGC---CTCACA-GCAAGCAACATTCATGATAAC----GAG-TTTCTCCTGAAG-C---TCGGC---AAAATTagctagaatttgtgtctttgtgtatttatatacaataaagtttgttaaa
gi|8 : gcaatagatttattttctgatttaccaatgatggatacTGTA-AA-CCAACTTTT-ATTTGTGtcttacacacaaataaaagttggtttacattaaa
gi|9 : gcaatagatttattttctgatttaccaatgatggatactaattttcttatccaagataatcttttagaacaaatgcgagataaaggactgcctcacagcaagcaacattcatgataacgagtttctcctgaagctcggcaaaatttcttacaCTGTA-AA-CCAACATTT-ATTCGCGGCT-G-T--TT-GTTTT--CGCT---A--TTCACCTGTGGTAA-----ACTG-------GTTCGCGGTGA-TTA-AT-TTT--TG-CGA--TC--GAG-CGT----TTT-TC---A--TAT--TT--ATG-----ACAGACA-TTC----AA-GGACTGG---TTCACA-ACGATAAATATTCGCGACAAT----GCG-GTTCTCGCGAA--T---T---C---AAAATTttaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATACTGTTAACCAACTTTTATGGTAATCCAGAAGAATTTATTTCACACTTTACCAGTGATGGACTGGATCATTAACAAACACATAAAACTACTAGTTTATGGTGAGAAACATTTGTGATGATAAGGTTCCTGTGAACCTAGCAATAATTTCTCACTCACAAAGAAAAGTTGGTTAGCGGTATTTCCTCA
Unaligned ( gi|21 ): CAACTCATTGCAACTCGGCTAAAAATTAATTAATTAAATGAATTAA