lowQualScore : 11111111111
lowQualScore : 11 22222 33333333333 22222 222222 222 111 1 1 1 3333 2222 1 111 1 222222 11111 1 7777777777777777777777777777777777 11 3 1 4444444444444 111111 11 111 1111 11111 11111 111 6666666666666 22222222222 44444444 111 55555 555555 2222222222222 9999999999999999999 2 44444444444 2222 333 2 2 777777777777 2 1
lowQualScore : 4 1 55 3333 0 99999 44444444444 3 8 66 22222 8888 888 111111 55 8 77 000 000 0 8 4 6666 3 1 2222 0 5 77 4444 0 0 1 0 111 1 6 666666 6 8 3 77777 6 2 99 2 4 6 8 8 0 0 8 3 8 8888888888888888888888888888888888 11 33 0 8 2 0 0 0 4444444444444 666666 11 0 555 22 4444 6 1 6 66666 99 6 1 5 44444 8 5 5 5 5 000 77 5 8 1111111111111 77777777777 7 6 22222222 6 2 777 99999 7 6 7 999999 8888888888888 2222222222222222222 3 0 55555555555 1111 555 3 2 0 4 0 666666666666 3 0 6 7
lowQualScore : . . .. .... . ..... ........... . . .. ..... .... ... ...... .. . .. ... ... . . . .... . . .... . . .. .... . . . . ... . . ...... . . . ..... . . .. . . . . . . . . . . .................................. .. .. . . . . . . ............. ...... .. . ... .. .... . . . ..... .. . . . ..... . . . . . ... .. . . ............. ........... . . ........ . . ... ..... . . . ...... ............. ................... . . ........... .... ... . . . . . ............ . . . .
lowQualScore : 0 4 00 6666 7 00000 22222222222 9 9 11 22222 5555 000 333333 99 9 11 000 666 1 0 0 8888 3 4 1111 7 7 00 8888 8 8 8 8 777 7 7 000000 7 0 0 88888 7 5 22 5 7 0 0 0 8 8 0 8 0 4444444444444444444444444444444444 00 88 8 0 0 8 8 0 0000000000000 888888 00 8 000 44 2222 7 0 7 33333 22 7 0 7 33333 4 7 7 7 7 000 55 8 0 5555555555555 22222222222 0 5 77777777 7 5 555 88888 0 7 0 333333 8888888888888 5555555555555555555 0 0 00000000000 0000 000 0 5 0 0 0 555555555555 0 0 0 0
consensus : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG---TTGTGAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCCTAGNTTCAG-TTGCGTCGGGG-GTAAG-TTGA---CCCGTGCAAATTAAAT--TGGGCCTTNAAATT-GAAAAAAG-AAGAA--TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-CTT-----AAATTT-GTTTT-GTCGTGCGAGTCGGTAGTGAAT---T-TTT-ACCAATGNAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-T---------------AT----TNAACC--AC--CGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAAAATGT-----TCGCTT-A-T--TTTT--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCC--G-TTTGCTCAGGGG-ATTT-----TGG-GTTGTGC-AGTA-G-ATCGAC---TG-AANT-AAAC-AATGAG-----AATGATGAGAGAAAAAN-TTATATTCTA-TAGG-ATATTGGAAATNAATAGNCC-NT--ATTTCCACATTATTTGGAAT---T-TATTT--TTGTAA-GATTTTTTTATCATTCAAGNTCGTG-GTGTTTTNTGTGGTTGGGGGGGGGGGGGGNGGGGGAGGTACTCCTACAATCATCCTACCATAANTTNGAAGAAATNATGTCAGTTGAGTTAACTTTGTAACGCANGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
Reference ( gi|1 ) : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG--GTTGTGAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCCTAGTTTCAG-TTGCGTCGGGG-GTAAG-TTGA---CCTGTGCAAATTAAAC--TGGACCTTTAAATT-GATAAAAG-AAG-A--TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATTCACTCTGAT---GGCTTGTTTGACG-CTG-----AAATTT-GTTTT-GTCGTACGAGTCGGTAGTGAAT---T-TTT-ACCAATGCAGTT--GAACTTTTGAACAAAAGCACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-T---------------AT----TAAACC--AC--CGTCATTTGCTAT-CATGT-TTAGAAGGTGGATATAAAATGT-----TCGCTT-A-T--TTTT--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCC--G-TTTGCTCAGGGG-ATTT-----TTG-GTTGTGC-AGTA-G-ATCGAC---TG-AATT-AAACAAATGAG-----AATGATGAAAGAAAAAC-TTATATTCTATTAGAAAGATTGGAAATCAATAGTCCGGT--ATTTCCAAATGATTTTGAATTAATATATTT--TTGTAA-GATTTTTTTATCATTCAGGTCCGTGTGTG-TTTTTGT-GTTGGGGGGGGGGGGG-----------ATTCC-AC-ATCATC---TCATAATTTGG-AGAAATTATGTCA-TTGAATTA------T-ACGTATG-TTTATCAATATCCTGCATGTTAAATAACAGATAATGTATTTT
gi|2 : GGCACCAA-TCGAT-TA--C-GCACAACCAAAAG---TTGTGAAAGAAAAAT----CGCA-G-G-TCGACATCCGGTTGT-GCAAGG-----TA----GACA--CCCCTATTTTCAG-TTGCGTCGGGG-GTAAG-TTGAA--CCTGTGCAAATTAAAC--TGGGCCTT-ACATT-GAAAAAAG-AAG----TGTGATGCTCTAGCAAATTTAATTATTCTAT-AACTT-CGTG-TA-GCA-TTCACTCTGAT---GGCT-GTTTGACGGCTG-----AAATTTTGTTTT-GTCGTACGAGTCGGTAGTGAAT---T-TTTTACCAATGCAGTTTGAAACTTTTTAACAAA--CAC-GTCTCAAT-CCTTAT-CTATGTAA---TTTCAAAT-AAA-TGCT---------------AT----TAA--C--AC--CGT-ATTT-CTAT-CATGTCTTAGAAGGTG-ATATAAA-TGT------CGCTT-ATT--TTTT--CAAG-AATTTGATATAAATAAAGT----GAT-TGTGGCA-CG---GATCGCCC--G-TTTGCTCAGGGG-ATTT-----TGG-GTTGTGCAAGAA-GAATCGAC---TG--ATT-AAAC-AATGAG-----AATGATG--AGAAAAA--TTATATT-TATTAG-AAGATT-GAAATCAAT-GTCC-TT--ATTTTCCAATGATTTTGAAT---TATATTT--TTGTAAGGATTTTTTTATCATTCAAGGTCGTG-GTGTTTTTTGTGGTTGGGGGGGGGGGGGGGGGGGGAGGTATTCCTACAATCATC---TTATAATTTGGAAGAAATTATGTCAGTTGA--TA------TAATGTATGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
gi|10 : GGCACCAA-TCCACCAA--CTGTA------------ATTGTGAAAGAAAAAT----AATG-T-GATTGAAATCCGGTTGT-GTA--G-----TACTTAGACG--CCA-TAAATTCAA-CTGCGTCGGAG-CTAAA-TTGA---TCCCTGTAAATTAAAT--TTGGCCTTCAA
gi|9 : GGCACCAA-TCCACCAAATCTGT-----TAAA-----TTGTGAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GACG--CCATAAATTCAAA-CTGCGTCGGAGCTTAAA-TTGAATCCCTGGTTAAATTAAAT--TTGGCCTTtcaaacaa
gi|8 : gGGCACCAA-TCCACCAAATCTGT-----TAAA-----TTGTGAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GACG--CCATAAATTCAAA-CTGCGTCGGAGCTTAAA-TTGAATCCCTGGTTAAATTAAAT--TTGGCCTTc
gi|4 : gGCACCAA-TCGATCTA--CTGCACAACCAAAAGTTGTTG-AAAAGAAAAAT-----GCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GATC--CTCCTAGTTTCAG-TTGCGTCGGGG-GTAAA-TTGA---CCTTTGCAAA-TAAAC--TGGGCC-TTAAA-T-GAAAAAAG-AAGAA--TGTTATGCTCTAGGCAATTTAAT-ATTCTAT-GAC-ATCATGGTAAGCAATATACTCGCAT---GGCTCGTTTGACG-CTT-----AAATTT-GTTTT-GTCGTGCGAGTCGGTAGTGAAT---G-TTT-ACCAATGCTGTT--GAAC-TTTGAACAAAAACACAGTCTCAAT-C-TCATTCTATGTAAAA-TTGCGAATAAAAATG-T---------------AT----TTAA-C--AT--CGTCAGTTGCTAT-CATGTCTTAGAAGGTGGATAT-AAATA------TCGCTT-A-T--TTTT--CACGAAATTTGATATAAATAGAAT----GAT-T-T-GCAGGG---GATCGCCC--G-TTTGTTCAGGGG-ATTT-----TGG-GTTGTGC-AGTA-G-ATCGAC---TA-AAGT-Ac
gi|14 : GCACCAAATCGATCAA--CTGCACAACCGAGAG---CTGTGAAAGAAAAAT----CA----------ACATCCAGTTGT-GCA--G-----TA----GACC--C
gi|3 : CACCAA-TCGATTTA--CTA-ACA-CCAGAAG---TTGTGAAAGAAAAAT-----GCATG-AATCGACATCCGGTC-T-GTT--G-----CA----GATC--CCC-TAGATTCAGATTGCGCCGGAA-GTAATCTTGA---CCCGTGCAAATTCA----CGGCCCTTGGATTT-GAAAAAAG-AAG-AATTTTGATGTT--AGGTAATTTAAT-ATTCTAT-TACTT-CATGGTAAGCAAAAC-CTCTG-T---GGCTCGTTTGAAG-CTATATTTAAATGT-GTTTTTGTCGTGCGAGTCGGTAGTAAATAATTATTT-ACCAATGAAGTT--GAACTTTGGAGGAAAA-CACAGTCACAAGAC-TTGTTCTGTGTAAAA-TTGC------------------------------------AACC--AC--CGCTCTTTGC-AT-CCTGTCTTAGAAGG-GGATATAACATATATGCATCACTT-A-TTATTTT--TAAAAAG--TGATATAAACAATATACACAATATAT-ACAG-GAAAAAT-GCTC--G-TTTGCTCGGGGGAATTTACATGTAG-GTAGTGC-AGTA-G-ATCAAG---TT-AATTGAAAC-AATAAG-----AGTGATG--AGAAAAAG-TTATATTCTA--ATGCATATTGGAAA
gi|5 : CACCAA-TCGACCTAA-CCGCGCAACCAAAAG---TTGTGAAA-AAAAAT----CGCA-T-GATCGACATCTGGTTGT-GCA--G-----TA----GA------------TTCAG-TTGTGTCGGGG-GTAAG-TTGG---CCCGTGCAAATCAAAT--TATGCCTTGAA--T-AACAAAAATAAGAA--AGTTGCGCTCTGAGCATTTTCAT-ATTCTATGAA--TTCATAGTAAGCAATACATTCTGATAGCGGCTCGTCAGACG-CTT-----GGATTT-GTTTC-GACGTGCGAGTCTCTACTGAAT---T-GTT-ACCTTTGAAGTT--GAACT-------AAAACCA-ACTC-CAGT-C-TTACTCTTTGTAAAA-TTGCAAAT-AAAATT-TCCCTAACAACACCCAATAGAATACACCTAACAACGCCCTTTGCTGT-CGTGT-TT------TG-----------------TCACTT-C-C--ATCT--CAAGAAA---------------------GAT-TGC-GCAGGA---AATCGCCC--GTTTTGTATAGAAG-ATTT-----TGG-GCTGTGC-AGTA-G-ATCGAC---
gi|4 : AG-TCGATCTA--CTGCACAACCCAAAcaa
gi|7 : gcaccaatcgatctactgcacaaccaaaagttgttgaaaagaaaaatgcaggatcgacatccggttgtgcagtagatcctcctagtttcagttgcgtcgggggtaaattgacctttgcaaataaactgggccttaaatgaaaaaagaagaatgttatgctctaggcaatttaatattctatgacatcatggtaagcaatatactcgcatggctcgtttgacgcttaaatttgttttgtcgtgcgagtcggtagtgaatgtttaccaatgctgttgaactttgaacaaaaacacagtctcaatctcattctatgtaaaattgcgaataaaaatgtatttaacatcgtcagttgctatcatgtcttagaaggtggatataaatatcgcttatttttcacgaaatttgatataaatagaatgatttgcaggggatcgcccgtttgttcaggggatA-TCGATTTA--CTGCACAAC-AGAAA--GTTGTGAAAGAAAAACAAAACGCA-T-TATCGACATCCAGTTCC-TAA--A-----TA----GACCAACTCCT---TTTAG---AC-TAGTGG-GTAAG-ATGG---CCCATGCAAGTAAAAAAATG---CCATAAATC-GAAAAAAG-ACG-AA-CGTGATACTCTAGGCAATTTAAT-Aaaagta
gi|12 : A----GACC--CTC-TAGATTCAG-TAGCGTAGGTC-GTAAT-TTGA---ACCATACAAATTAAAT--TGGGCCTT--AATTCGACAAAAATAAGAA--TGTGACGCTCTGGCTTATTTGAT-ATCATAT-AA--TTCATgccc
gi|13 : AAG-AA-----TATGATGTTGCAGGCAATTTGAT-ATTCTAT-GA-TTTCATGGTAAGCAATACACACTGAT---GGCTCGTTTGACG-CTT-----GAATTT-GTTT
gi|15 : CTCGGAT---GGCTCGTTTGACG-CTT-----ACATTT-GTTTT-GTCGTGC
gi|16 : ---T-TTT-ACCAATGAAGTT--GAACTTTTGGAGGAAAACACAGTC
gi|6 : -ACCAATGCAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAAATTGCAAAT-AAAATG-T---------------AT----TTAAC---AC--CGCCATTTGCTATTCATGTCTTAGAAGGTGGATATAAAATGC------CGCTTTA-T--TTTTTCCTAGAA-TTTGATACAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCC--G-TTTGCTCAGGGG-ATTT-----TGG-GTTGTGC-AGTAAG-ATCGAC---TG-AAGT-AAA--------------ACGATGAGA------C-CTAT-TTTTGATGGA--TATTGGAAATGAATAAACC-ATAAATTTCCACAGTATTTGGAA--AAT-TGTTTTGTTGTAA-
gi|4 : ----GGT-TGT-GCAGTA---GATCCTCCTAG-TT---TCAG-------------TTGCGTCG-GG-GGTA-A-ATTGACCTTTGCAAAT-AAAC---TGGGCCTTAAATGAAAAAAGAAGAATGTTATGCTCTAcga
gi|4 : gcaccaatcgatctactgcacaaccaaaagttgttgaaaagaaaaatgcaggatcgacatcc-ACTT-----TTG-GTTGTGC-AGTA-G-ATCGAT---TG-ggcaatttaatattctatgacatcatggtaagcaatatactcgcatggctcgtttgacgcttaaatttgttttgtcgtgcgagtcggtagtgaatgtttaccaatgctgttgaactttgaacaaaaacacagtctcaatctcattctatgtaaaattgcgaataaaaatgtatttaacatcgtcagttgctatcatgtcttagaaggtggatataaatatcgcttatttttcacgaaatttgatataaatagaatgatttgcaggggatcgcccgtttgttcaggggattttgggttgtgcagtagatcgactaaagta
gi|11 : gcac--ATATCCACATTATTTGGAATT----TATTT--TT---------TTTTTAT--------TTCG-----G-TTTGTGT-GTTGAGGGGGGGGGGGGTGAA------ACTCC-AC-ATCATCCTACCATAAGTTCG-AGAAATAATGTCA-TTGAGTTAACTTTGT-ACGCAGG-TTtgttgaaaagaaaaatgcaggatcgacatccggttgtgcagtagatcctcctagtttcagttgcgtcgggggtaaattgacctttgcaaataaactgggccttaaatgaaaaaagaagaatgttatgctctaggcaatttaatattctatgacatcatggtaagcaatatactcgcatggctcgtttgacgcttaaatttgttttgtcgtgcgagtcggtagtgaatgtttaccaatgctgttgaactttgaacaaaaacacagtctcaatctcattctatgtaaaattgcgaataaaaatgtatttaacatcgtcagttgctatcatgtcttagaaggtggatataaatatcgcttatttttcacgaaatttgatataaatagaatgatttgcaggggatcgcccgtttgttcaggggattttgggttgtgcagtagatcgactaaagta
Alignments
lowQualScore : 11 22222222222 22222 1111 11 11 1 1 22 111 11111 11111 3333333333 1111 1111 111 11111 11 111 333333 2222222 1 3333 111 1 11111 1 1 2 66666666666 2222 3333 2 2 666666666666
lowQualScore : 4 1 55 3333 3 4 55 66666666666 2 8 55 00000 7777 2222 7 66 8 44 8 55 55 8 11 0 0 5 8 5 1 55 5 5 00 5 3 000 5 44444 5 5 33333 5 1 77 5 0 6 6 6 1 6 3 6 3 55 1 3 2 3 6 2 2 6 7777777777 4444 666 99 6 99 3 3 5 3 4444 6 1 6 6 111 6 6 66666 6 6 6 0 1 8 22 0 2 555 1 6 111111 3 2 1 7 1 0000000 8 3 2 0 1111 777 0 6 99999 3 7 4 3 77777777777 0 8888 0000 1 1 3 1 3 222222222222 0 1 7 4
lowQualScore : . . .. .... . . .. ........... . . .. ..... .... .... . .. . .. . .. .. . .. . . . . . . .. . . .. . . ... . ..... . . ..... . . .. . . . . . . . . . . .. . . . . . . . . .......... .... ... .. . .. . . . . .... . . . . ... . . ..... . . . . . . .. . . ... . . ...... . . . . . ....... . . . . .... ... . . ..... . . . . ........... . .... .... . . . . . ............ . . . .
lowQualScore : 0 4 00 6666 2 0 55 88888888888 5 0 55 00000 7777 9999 5 11 0 44 0 44 00 2 00 5 7 6 7 7 4 11 0 7 00 0 5 000 7 33333 7 7 33333 7 0 99 0 7 7 7 7 7 7 2 7 3 00 0 2 5 2 7 5 5 7 3333333333 2222 888 22 7 22 5 2 7 7 2222 7 0 7 7 777 7 7 77777 7 7 7 8 0 0 55 2 5 000 0 5 555555 0 5 0 3 0 1111111 8 0 5 0 2222 000 0 7 33333 3 3 0 3 00000000000 7 3333 0000 0 0 7 0 3 333333333333 7 0 3 0
consensus : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCCTAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCCTT-AAATT-GA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GT--A-TTTCCACATNATTTNG-AATTA---TATTT--TTGTAA-GATTTTTTTATCATTCAGG-CCGTG-GTGTTTT-TGT-GTTGGGGGGGGGGGGGG-GGG------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGAGTTA--T-TGT-ACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
Reference ( family-1355 ) : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCCTAGNTTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCCTTNAAATT-GA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGNAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTNAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAANT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTA-TAG-GATATTGGAAATNAATAGNCC-NT--A-TTTCCACATTATTTGG-AATT----TATTT--TTGTAA-GATTTTTTTATCATTCAAGNTCGTG-GTGTTTTNTGTGGTTGGGGGGGGGGGGGGNGGGGGAGGTACTCCTACAATCATCCTACCATAANTTNGAAGAAATNATGTCAGTTGAGTTAACTTTGTAACGCANGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
gi|1 : GGCACCAA-TCGATCTA--CTGCACAACCAAAAGGTTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCCTAGTTTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCTGTG--CAAATTAAACTGGACCTTTAAATT-GA-TAAAAGAAGA--TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATTCACTCTGAT---GGCTTGTTTGACG-C-----TGAAATTT-G-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACAAAAGCACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTAAACCACCGTCATTTGCTAT-CATGT-TTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TTGGTTGTGC-AGTA-G-ATCGACTGAATT-AAACAAATGAGAATGATGAAAGAAAAACTTATATTCTATTAGAAAGATTGGAAATCAATAGTCCGGT--A-TTTCCAAATGATTTTG-AATTAATATATTT--TTGTAA-GATTTTTTTATCATTCAGGTCCGTGTGTGTTTT-TGT-GTTGGGGGGGGGGGGG-----------ATTCC-AC-ATCATC---TCATAATTTGG-AGAAATTATGTCA-TTGAATTA--T-----ACGTATG-TTTATCAATATCCTGCATGTTAAATAACAGATAATGTATTTT
gi|10 : GGCACCAA-TCCACCAA--CTGTA---------A-TTGT--GAAAGAAAAAT----AATG-T-GATTGAAATCCGGTTGT-GTA--G-----TACTTAGACG--CCA-TAAATTC-AA-CTGCGTCGGAG-CTAA-ATTGA--TCCCTG--TAAATTAAATTTGGCCTTCAA
gi|11 : --A-TATCCACATTATTTGG-AATT----TATTT-----------TTTTTTTAT--TTC--------G-G---TTTGTGT-GTTGAGGGGGGGGGGGGTGAA------ACTCC-AC-ATCATCCTACCATAAGTTCG-AGAAATAATGTCA-TTGAGTTAACTTTGT-ACGCAGGTTtcaaacaa
gi|12 : A----GACC--CTC-TAGATTC-AG-TAGCGTAGGTC-GTAA-TTTGA--ACCATA--CAAATTAAATTGGGCCTT--AATTCGACAAAAATAAGAA-TGTGACGCTCTGGCTTATTTGAT-ATCATAT-AA--TTCAT
gi|13 : AAGAA-TATGATGTTGCAGGCAATTTGAT-ATTCTAT-GA-TTTCATGGTAAGCAATACACACTGAT---GGCTCGTTTGACG-C-----TTGAATTT-G-TTT
gi|14 : GCACCAAATCGATCAA--CTGCACAACCGAGAG-CTGT--GAAAGAAAA--------------ATCAACATCCAGTTGT-GCA--G-----TA----GACC--C
gi|15 : CTCGGAT---GGCTCGTTTGACG-C-----TTACATTT-G-TTTTGTCGTGC
gi|16 : --T--TTT-ACCAATGAAGTT--GAACTTTTGGAGGAAAACACAGTC
gi|2 : GGCACCAA-TCGAT-TA--C-GCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-G-TCGACATCCGGTTGT-GCAAGG-----TA----GACA--CCCCTATTTTC-AG-TTGCGTCGGGG-GTAA-GTTGAA-CCTGTG--CAAATTAAACTGGGCCTT-ACATT-GA-AAAAAGAAG---TGTGATGCTCTAGCAAATTTAATTATTCTAT-AACTT-CGTG-TA-GCATT-CACTCTGAT---GGCT-GTTTGACGGC-----TGAAATTTTG-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTTTACCAATGCAGTTTGAAACTTTTTAACAAA--CAC-GTCTCAAT-CCTTAT-CTATGTAA---TTTCAAAT-AAA-TGCTATTAA--CACCGT-ATTT-CTAT-CATGTCTTAGAAGGTG-ATATAA-A-TG---T------CGCT----T-ATT--TTT-T--CAAG-AATTTGATATAAATAAAGT----GAT-TGTGGCA-CG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGCAAGAA-GAATCGACTG-ATT-AAAC-AATGAGAATGATGAG---AAAAATTATATT-TATTAG-AAGATT-GAAATCAAT-GTCC-TT--ATTTTCCA-ATGATTTTG-AATTA---TATTT--TTGTAAGGATTTTTTTATCATTCAAGGTCGTG-GTGTTTTTTGTGGTTGGGGGGGGGGGGGGGGGGGGAGGTATTCCTACAATCATCTT---ATAATTTGGAAGAAATTATGTCAGTTGA--------TATAATGTATGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
gi|3 : CACCAA-TCGATTTA--CTA-ACA-CCAGAAG-TTGT--GAAAGAAAAAT-----GCATG-AATCGACATCCGGTC-T-GTT--G-----CA----GA-T--CCCCTAGATTC-AGATTGCGCCGGAA-GTAATCTTGA--CCCGTG--CAAATTCA--CGGCCCTTGGATTT-GA-AAAAAGAAGAATTTTGATG--TTAGGTAATTTAAT-ATTCTAT-TAC-TTCATGGTAAGCAAAAC-CTCTG-T---GGCTCGTTTGAAG-CTATATTTAAATGT-GTTTTTGTCGTGCGAGTCGGTAGTAAATAATTATTT-ACCAATGAAGTT--GAAC-TTTGGAGGAAAACACAGTCACAAGAC-TTGTTCTGTGTAAAA-TTGC-----------------AACCACCGCTCTTTGC-AT-CCTGTCTTAGAAGG-GGATATAA-CATA---TATGCATCACT----T-A-TTATTT-T--TAAAAAG--TGATATAAACAATATACACAATATAT-ACAG-GAAAAAT-GCTCG-TTTGCTCGGGGGAATTTACATGTAGGTAGTGC-AGTA-G-ATCAAGTTAATTGAAAC-AATAAGAGTGAT--GAGAAAAAGTTATATTCTA-ATG-CATATTGGAAA
gi|4 : GCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGTTGAAAAGAAAAAT-----GCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GATC--CTCCTAGTTTC-AG-TTGCGTCGGGG-GTAA-ATTGA--CCTTTG--CAAAT-AAACTGGGCCTTAAA--T-GA-AAAAAGAAGAA-TGTTATGCTCTAGGCAATTTAAT-ATTCTAT-GACAT-CATGGTAAGCAATATACTCGCAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--G--TTT-ACCAATGCTGTT--GAAC-TTTGAACAAAAACACAGTCTCAAT-C-TCATTCTATGTAAAA-TTGCGAATAAAAATG-TATTTAA-CATCGTCAGTTGCTAT-CATGTCTTAGAAGGTGGATAT-A-AATA---------TCGCT----T-A-T--TTT-T--CACGAAATTTGATATAAATAGAAT----GAT-T-T-GCAGGG---GATCGCCCG-TTTGTTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTAAAGT-A
gi|5 : CACCAA-TCGACCTAA-CCGCGCAACCAAAAG-TTGT--GAAA-AAAAAT----CGCA-T-GATCGACATCTGGTTGT-GCA--G-----TA----GA------------TTC-AG-TTGTGTCGGGG-GTAA-GTTGG--CCCGTG--CAAATCAAATTATGCCTTGAA--T-AACAAAAATAAGAA-AGTTGCGCTCTGAGCATTTTCAT-ATTCTATGAA--TTCATAGTAAGCAATACATTCTGATAGCGGCTCGTCAGACG-C-----TTGGATTT-G-TTTCGACGTGCGAGTCTCTACTGAAT--T--GTT-ACCTTTGAAGTT--GAACT--------AAAAC-CAACTCCAGT-C-TTACTCTTTGTAAAA-TTGCAAAT-AAAATT-TCCCTAACAACACCCA------A---------TAGAA--TACACCTAACAACGCCCT-----TTGCTGTCGT-G-T--TTTGT--C----ACTTCCATCTCAAGAAA------GAT-TGC-GCAGGA---AATCGCCCGTTTTGTATAGAAG-ATTT-----TGGGCTGTGC-AGTA-G-ATCGAC
gi|6 : -ACCAATGCAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAAATTGCAAAT-AAAATG-TATTTAAC-ACCGCCATTTGCTATTCATGTCTTAGAAGGTGGATATAA-AATG---C------CGCT----TTA-T--TTT-TTCCTAGAA-TTTGATACAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTAAG-ATCGACTGAAGT-AAA---------ACGATGAGA------CCTATTTTTGA-T-G-GATATTGGAAATGAATAAACC-ATAAA-TTTCCACAGTATTTGGAAAAT----TGTTTTGTTGTAA-caa
gi|7 : A-TCGATTTA--CTGCACAACAGAAAG-TTGT--GAAAGAAAAACAAAACGCA-T-TATCGACATCCAGTTCC-TAA--A-----TA----GACCAACTCCT---TTT-AG---AC-TAGTGG-GTAA-GATGG--CCCATG--CAAGTAAAAAAATGCCAT-AAATC-GA-AAAAAGACGAA-CGTGATACTCTAGGCAATTTAAT-Acga
gi|8 : GGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCATAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCCTTgccc
gi|9 : gGGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCATAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCCTTc
Alignments
lowQualScore : 11 22222222222 22222 11111111111 11 11 22 111 11111 11111 1 3333333333 1111 1111 111 11111 11 111 11111 2222222 11 111 1 1 444444444444 1 22 4444444 1 1 3333 1 1 4444444444
lowQualScore : 4 1 55 3333 3 4 55 66666666666 2 8 55 00000 7777 66666666666 1 8 4 8 55 55 8 11 0 0 4 5 6 5 3 5 5 5 00 5 3 000 5 44444 5 5 33333 5 0 77 5 88 6 6 6 1 6 3 6 7 0 1 3 2 3 6 2 2 6 7777777777 4444 666 99 6 99 3 3 5 3 4444 6 1 6 6 111 6 6 66666 6 6 6 0 0 8 22 0 2 555 1 6 33333 1 2 7 2222222 8 1 1 33 777 7 2 0 6 3 000000000000 3 00 3333333 3 3 6666 3 3 5555555555 7 1
lowQualScore : . . .. .... . . .. ........... . . .. ..... .... ........... . . . . .. .. . .. . . . . . . . . . . .. . . ... . ..... . . ..... . . .. . .. . . . . . . . . . . . . . . . . . .......... .... ... .. . .. . . . . .... . . . . ... . . ..... . . . . . . .. . . ... . . ..... . . . ....... . . . .. ... . . . . . ............ . .. ....... . . .... . . .......... . .
lowQualScore : 0 4 00 6666 2 0 55 88888888888 5 0 55 00000 7777 55555555555 2 0 0 0 44 00 2 00 5 7 0 0 0 0 2 0 0 7 00 0 5 000 7 33333 7 7 33333 7 7 99 0 33 7 7 7 7 7 2 7 5 8 0 2 5 2 7 5 5 7 3333333333 2222 888 22 7 22 5 2 7 7 2222 7 0 7 7 777 7 7 77777 7 7 7 8 6 0 55 2 5 000 0 5 22222 0 5 3 8888888 8 0 0 88 555 0 5 0 7 3 000000000000 3 00 3333333 3 3 3333 3 3 7777777777 3 0
consensus : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TCGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GT--A-TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
Reference ( family-1355 ) : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TTGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GT--A-TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-AGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGAGTTA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
gi|1 : GGCACCAA-TCGATCTA--CTGCACAACCAAAAGGTTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGTTTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCTGTG--CAAATTAAACTGGACCTTTAAA-TTGA-TAAAAGAAG-A-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATTCACTCTGAT---GGCTTGTTTGACG-C-----TGAAATTT-G-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACAAAAGCACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTAAACCACCGTCATTTGCTAT-CATGT-TTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TTGGTTGTGC-AGTA-G-ATCGACTGAATT-AAACAAATGAGAATGATGAAAGAAAAACTTATATTCTATTAGAAAGATTGGAAATCAATAGTCCGGT--A-TTTCCAAATGATTTTG--AATTAATATATTTTTGTAA-GATTTTTTTATCATTC-AGGTCCGTGTGTG-TTTTTGT-GTT-----GGGGGGGGGGGGG-------ATTCC-AC-ATCATC---TCATAATTTGG-AGAAATTATGTCA-TTGA---A---TTATACGTATG-TTTATCAATATCCTGCATGTTAAATAACAGATAATGTATTTT
gi|10 : GGCACCAA-TCCACCAA--CTGTA---------A-TTGT--GAAAGAAAAAT----AATG-T-GATTGAAATCCGGTTGT-GTA--G-----TACTTAGACG--CCA----TAAATTC-AA-CTGCGTCGGAG-CTAA-ATTGA--TCCCTG--TAAATTAAATTTGGCC-TTCAA-TCAA-ACAA
gi|11 : --A-TATCCACATTATTTGG--AAT---T-TATTTTT---------TTTTTAT--TTC-GG------------TTTGTGT-GTTGAGGGGGGGGGGGGTGAA-------ACTCC-AC-ATCATCCTACCATAAGTTCG-AGAAATAATGTCA-TTGAGTTAACTTTGTACGCAGGTT
gi|12 : A----GACC--CTC----TAGATTC-AG-TAGCGTAGGTC-GTAA-TTTGA--ACCATA--CAAATTAAATTGGGCC-TTAAT-TCGACAAAAATAAGAA-TGTGACGCTCTGGCTTATTTGAT-ATCATAT-AA--TTCAT
gi|13 : AAGAA-TATGATGTTGCAGGCAATTTGAT-ATTCTAT-GA-TTTCATGGTAAGCAATACACACTGAT---GGCTCGTTTGACG-C-----TTGAATTT-G-TTT
gi|14 : GCACCAAATCGATCAA--CTGCACAACCGAGAG-CTGT--GAAAGAAAA--------------ATCAACATCCAGTTGT-GCA--G-----TA----GACC--C
gi|15 : CTCGGAT---GGCTCGTTTGACG-C-----TTACATTT-G-TTTTGTCGTGC
gi|16 : --T--TTT-ACCAATGAAGTT--GAACTTTTGGAGGAAAACACAGTC
gi|2 : GGCACCAA-TCGAT-TA--C-GCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-G-TCGACATCCGGTTGT-GCAAGG-----TA----GACA--CCCC---TATTTTC-AG-TTGCGTCGGGG-GTAA-GTTGAA-CCTGTG--CAAATTAAACTGGGCC-TTACA-TTGA-AAAAAGAAG---TGTGATGCTCTAGCAAATTTAATTATTCTAT-AACTT-CGTG-TA-GCATT-CACTCTGAT---GGCT-GTTTGACGGC-----TGAAATTTTG-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTTTACCAATGCAGTTTGAAACTTTTTAAC--AAACAC-GTCTCAAT-CCTTAT-CTATGTAA---TTTCAAAT-AAA-TGCTATT-AAC-ACCGT-ATTT-CTAT-CATGTCTTAGAAGGTG-ATATAA-A-TG---T------CGCT----T-ATT--TTT-T--CAAG-AATTTGATATAAATAAAGT----GAT-TGTGGCA-CG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGCAAGAA-GAATCGACTG-ATT-AAAC-AATGAGAATGATGAG---AAAAATTATATT-TATTAG-AAGATT-GAAATCAAT-GTCC-TT--ATTTTCCA-ATGATTTTG--AAT---TATATTTTTGTAAGGATTTTTTTATCATTCAAGG-TCGTG-GTGTTTTTTGTGGTTG-GGGGGGGGGGGGGGGGGGGAGGTATTCCTACAATCATCTT---ATAATTTGGAAGAAATTATGTCAGTTGA--TA---T--AATGTATGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
gi|3 : CACCAA-TCGATTTA--CTA-ACA-CCAGAAG-TTGT--GAAAGAAAAAT-----GCATG-AATCGACATCCGGTC-T-GTT--G-----CA----GA-T--CCCC---TAGATTC-AGATTGCGCCGGAA-GTAATCTTGA--CCCGTG--CAAATTCA--CGGCCC-TTGGATTTGA-AAAAAGAAGAATTTTGATG--TTAGGTAATTTAAT-ATTCTAT-TAC-TTCATGGTAAGCAAAAC-CTCTG-T---GGCTCGTTTGAAG-CTATATTTAAATGT-GTTTTTGTCGTGCGAGTCGGTAGTAAATAATTATTT-ACCAATGAAGTT--GAAC-TTTGGAGGAAAACACAGTCACAAGAC-TTGTTCTGTGTAAAA-TTGC-----------------AACCACCGCTCTTTGC-AT-CCTGTCTTAGAAGG-GGATATAA-CATA---TATGCATCACT----T-A-TTATTT-T--TAAAAAG--TGATATAAACAATATACACAATATAT-ACAG-GAAAAAT-GCTCG-TTTGCTCGGGGGAATTTACATGTAGGTAGTGC-AGTA-G-ATCAAGTTAATTGAAAC-AATAAGAGTGAT--GAGAAAAAGTTATATTCTAAT-G-CATATTGGAAA
gi|4 : GCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGTTGAAAAGAAAAAT-----GCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GATC--CTCC---TAGTTTC-AG-TTGCGTCGGGG-GTAA-ATTGA--CCTTTG--CAAAT-AAACTGGGCC-TTAAA-T-GA-AAAAAGAAGAA-TGTTATGCTCTAGGCAATTTAAT-ATTCTAT-GACAT-CATGGTAAGCAATATACTCGCAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--G--TTT-ACCAATGCTGTT--GAAC-TTTGAACAAAAACACAGTCTCAAT-C-TCATTCTATGTAAAA-TTGCGAATAAAAATG-TATTTAA-CATCGTCAGTTGCTAT-CATGTCTTAGAAGGTGGATAT-A-AATA---------TCGCT----T-A-T--TTT-T--CACGAAATTTGATATAAATAGAAT----GAT-T-T-GCAGGG---GATCGCCCG-TTTGTTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTAAAGT-A
gi|5 : CACCAA-TCGACCTAA-CCGCGCAACCAAAAG-TTGT--GAAA-AAAAAT----CGCA-T-GATCGACATCTGGTTGT-GCA--G-----TA----GA---------------TTC-AG-TTGTGTCGGGG-GTAA-GTTGG--CCCGTG--CAAATCAAATTATGCC-TTGAA-TAAC-AAAAATAAGAA-AGTTGCGCTCTGAGCATTTTCAT-ATTCTATGAA--TTCATAGTAAGCAATACATTCTGATAGCGGCTCGTCAGACG-C-----TTGGATTT-G-TTTCGACGTGCGAGTCTCTACTGAAT--T--GTT-ACCTTTGAAGTT--GAACT--------AAAAC-CAACTCCAGT-C-TTACTCTTTGTAAAA-TTGCAAAT-AAAATT-TCCCTAACAACACCCA------A---------TAGAA--TACACCTAACAACGCCCT-----TTGCTGTCGT-G-T--TTTGT--C----ACTTCCATCTCAAGAAA------GAT-TGC-GCAGGA---AATCGCCCGTTTTGTATAGAAG-ATTT-----TGGGCTGTGC-AGTA-G-ATCGAC
gi|6 : -ACCAATGCAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAAATTGCAAAT-AAAATG-TATTTAAC-ACCGCCATTTGCTATTCATGTCTTAGAAGGTGGATATAA-AATG---C------CGCT----TTA-T--TTT-TTCCTAGAA-TTTGATACAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTAAG-ATCGACTGAAGT-AAA---------ACGATGAGA------CCTATTTTTGAT--G-GATATTGGAAATGAATAAACC-ATAAA-TTTCCACAGTATTTGGAAAAT---TGTTTTGTTGTAA-caa
gi|7 : A-TCGATTTA--CTGCACAACAGAAAG-TTGT--GAAAGAAAAACAAAACGCA-T-TATCGACATCCAGTTCC-TAA--A-----TA----GACCAACTCCTTTTAGACT--AG-T--------GG-GTAA-GATGG--CCCATG--CAAGTAAAAAAATGCC-ATAAA-TCGA-AAAAAGACGAA-CGTGATACTCTAGGCAATTTAAT-Acga
gi|8 : GGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCA---TAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCC-TTgccc
gi|9 : gGGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCA---TAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCC-TTc
Alignments
lowQualScore : 11 22222222222 22222 11111111111 11 11 22 111 11111 11111 1 3333333333 1111 1111 111 11111 11 111 11111 11 22 11 111 1 444444444444444 1 22 4444444 1 1 3333 1 1 4444444444
lowQualScore : 4 1 55 3333 3 4 55 66666666666 2 8 55 00000 7777 66666666666 1 8 4 8 55 55 8 11 0 0 4 5 5 5 3 5 5 5 00 5 3 000 5 44444 5 5 33333 5 0 77 5 88 6 6 6 1 6 3 6 7 0 1 3 2 3 6 2 2 6 7777777777 4444 666 99 6 99 3 3 5 3 4444 6 1 6 6 111 6 6 66666 6 6 6 0 0 8 22 0 2 555 1 6 33333 1 2 7 77 33 8 1 1 33 777 7 2 0 6 444444444444444 3 00 3333333 3 3 6666 3 3 2222222222 7 1
lowQualScore : . . .. .... . . .. ........... . . .. ..... .... ........... . . . . .. .. . .. . . . . . . . . . . .. . . ... . ..... . . ..... . . .. . .. . . . . . . . . . . . . . . . . . .......... .... ... .. . .. . . . . .... . . . . ... . . ..... . . . . . . .. . . ... . . ..... . . . .. .. . . . .. ... . . . . ............... . .. ....... . . .... . . .......... . .
lowQualScore : 0 4 00 6666 2 0 55 88888888888 5 0 55 00000 7777 55555555555 2 0 0 0 44 00 2 00 5 7 0 0 4 0 2 0 0 7 00 0 5 000 7 33333 7 7 33333 7 7 99 0 33 7 7 7 7 7 2 7 5 8 0 2 5 2 7 5 5 7 3333333333 2222 888 22 7 22 5 2 7 7 2222 7 0 7 7 777 7 7 77777 7 7 7 8 6 0 55 2 5 000 0 5 22222 0 5 3 00 88 8 0 0 88 555 0 5 0 7 000000000000000 3 00 3333333 3 3 3333 3 3 0000000000 3 0
consensus : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TCGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GTA--TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
Reference ( family-1355 ) : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TCGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GTA--TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
gi|1 : GGCACCAA-TCGATCTA--CTGCACAACCAAAAGGTTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGTTTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCTGTG--CAAATTAAACTGGACCTTTAAA-TTGA-TAAAAGAAG-A-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATTCACTCTGAT---GGCTTGTTTGACG-C-----TGAAATTT-G-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACAAAAGCACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTAAACCACCGTCATTTGCTAT-CATGT-TTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TTGGTTGTGC-AGTA-G-ATCGACTGAATT-AAACAAATGAGAATGATGAAAGAAAAACTTATATTCTATTAGAAAGATTGGAAATCAATAGTCCGGTA--TTTCCAAATGATTTTG--AATTAATATATTTTTGTAA-GATTTTTTTATCATTC-AGGTCCGTGTGTG-TTTTTGT-GTT-----GGGGGGGGGGGGG-------ATTCC-AC-ATCATC---TCATAATTTGG-AGAAATTATGTCA-TTGA---A---TTATACGTATG-TTTATCAATATCCTGCATGTTAAATAACAGATAATGTATTTT
gi|10 : GGCACCAA-TCCACCAA--CTGTA---------A-TTGT--GAAAGAAAAAT----AATG-T-GATTGAAATCCGGTTGT-GTA--G-----TACTTAGACG--CCA----TAAATTC-AA-CTGCGTCGGAG-CTAA-ATTGA--TCCCTG--TAAATTAAATTTGGCC-TTCAA-TCAA-ACAA
gi|11 : A--TATCCACATTATTTGG--AAT---T-TATTTTT---------TTTTTAT--TTC-GG------------TTTGTGT-GTTGAGGGGGGGGGGGGTGAA-------ACTCC-AC-ATCATCCTACCATAAGTTCG-AGAAATAATGTCA-TTGAGTTAACTTTGTACGCAGGTT
gi|12 : A----GACC--CTC----TAGATTC-AG-TAGCGTAGGTC-GTAA-TTTGA--ACCATA--CAAATTAAATTGGGCC-TTAAT-TCGACAAAAATAAGAA-TGTGACGCTCTGGCTTATTTGAT-ATCATAT-AA--TTCAT
gi|13 : AAGAA-TATGATGTTGCAGGCAATTTGAT-ATTCTAT-GA-TTTCATGGTAAGCAATACACACTGAT---GGCTCGTTTGACG-C-----TTGAATTT-G-TTT
gi|14 : GCACCAAATCGATCAA--CTGCACAACCGAGAG-CTGT--GAAAGAAAA--------------ATCAACATCCAGTTGT-GCA--G-----TA----GACC--C
gi|15 : CTCGGAT---GGCTCGTTTGACG-C-----TTACATTT-G-TTTTGTCGTGC
gi|16 : --T--TTT-ACCAATGAAGTT--GAACTTTTGGAGGAAAACACAGTC
gi|2 : GGCACCAA-TCGAT-TA--C-GCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-G-TCGACATCCGGTTGT-GCAAGG-----TA----GACA--CCCC---TATTTTC-AG-TTGCGTCGGGG-GTAA-GTTGAA-CCTGTG--CAAATTAAACTGGGCC-TTACA-TTGA-AAAAAGAAG---TGTGATGCTCTAGCAAATTTAATTATTCTAT-AACTT-CGTG-TA-GCATT-CACTCTGAT---GGCT-GTTTGACGGC-----TGAAATTTTG-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTTTACCAATGCAGTTTGAAACTTTTTAAC--AAACAC-GTCTCAAT-CCTTAT-CTATGTAA---TTTCAAAT-AAA-TGCTATT-AAC-ACCGT-ATTT-CTAT-CATGTCTTAGAAGGTG-ATATAA-A-TG---T------CGCT----T-ATT--TTT-T--CAAG-AATTTGATATAAATAAAGT----GAT-TGTGGCA-CG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGCAAGAA-GAATCGACTG-ATT-AAAC-AATGAGAATGATGAG---AAAAATTATATT-TATTAG-AAGATT-GAAATCAAT-GTCC-TTAT-TTTCCA-ATGATTTTG--AAT---TATATTTTTGTAAGGATTTTTTTATCATTCAAGG-TCGTG-GTGTTTTTTGTGGTTG-GGGGGGGGGGGGGGGGGGGAGGTATTCCTACAATCATCTT---ATAATTTGGAAGAAATTATGTCAGTTGA--TA---T--AATGTATGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
gi|3 : CACCAA-TCGATTTA--CTA-ACA-CCAGAAG-TTGT--GAAAGAAAAAT-----GCATG-AATCGACATCCGGTC-T-GTT--G-----CA----GA-T--CCCC---TAGATTC-AGATTGCGCCGGAA-GTAATCTTGA--CCCGTG--CAAATTCA--CGGCCC-TTGGATTTGA-AAAAAGAAGAATTTTGATG--TTAGGTAATTTAAT-ATTCTAT-TAC-TTCATGGTAAGCAAAAC-CTCTG-T---GGCTCGTTTGAAG-CTATATTTAAATGT-GTTTTTGTCGTGCGAGTCGGTAGTAAATAATTATTT-ACCAATGAAGTT--GAAC-TTTGGAGGAAAACACAGTCACAAGAC-TTGTTCTGTGTAAAA-TTGC-----------------AACCACCGCTCTTTGC-AT-CCTGTCTTAGAAGG-GGATATAA-CATA---TATGCATCACT----T-A-TTATTT-T--TAAAAAG--TGATATAAACAATATACACAATATAT-ACAG-GAAAAAT-GCTCG-TTTGCTCGGGGGAATTTACATGTAGGTAGTGC-AGTA-G-ATCAAGTTAATTGAAAC-AATAAGAGTGAT--GAGAAAAAGTTATATTCTAAT-G-CATATTGGAAA
gi|4 : GCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGTTGAAAAGAAAAAT-----GCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GATC--CTCC---TAGTTTC-AG-TTGCGTCGGGG-GTAA-ATTGA--CCTTTG--CAAAT-AAACTGGGCC-TTAAA-T-GA-AAAAAGAAGAA-TGTTATGCTCTAGGCAATTTAAT-ATTCTAT-GACAT-CATGGTAAGCAATATACTCGCAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--G--TTT-ACCAATGCTGTT--GAAC-TTTGAACAAAAACACAGTCTCAAT-C-TCATTCTATGTAAAA-TTGCGAATAAAAATG-TATTTAA-CATCGTCAGTTGCTAT-CATGTCTTAGAAGGTGGATAT-A-AATA---------TCGCT----T-A-T--TTT-T--CACGAAATTTGATATAAATAGAAT----GAT-T-T-GCAGGG---GATCGCCCG-TTTGTTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTAAAGT-A
gi|5 : CACCAA-TCGACCTAA-CCGCGCAACCAAAAG-TTGT--GAAA-AAAAAT----CGCA-T-GATCGACATCTGGTTGT-GCA--G-----TA----GA---------------TTC-AG-TTGTGTCGGGG-GTAA-GTTGG--CCCGTG--CAAATCAAATTATGCC-TTGAA-TAAC-AAAAATAAGAA-AGTTGCGCTCTGAGCATTTTCAT-ATTCTATGAA--TTCATAGTAAGCAATACATTCTGATAGCGGCTCGTCAGACG-C-----TTGGATTT-G-TTTCGACGTGCGAGTCTCTACTGAAT--T--GTT-ACCTTTGAAGTT--GAACT--------AAAAC-CAACTCCAGT-C-TTACTCTTTGTAAAA-TTGCAAAT-AAAATT-TCCCTAACAACACCCA------A---------TAGAA--TACACCTAACAACGCCCT-----TTGCTGTCGT-G-T--TTTGT--C----ACTTCCATCTCAAGAAA------GAT-TGC-GCAGGA---AATCGCCCGTTTTGTATAGAAG-ATTT-----TGGGCTGTGC-AGTA-G-ATCGAC
gi|6 : -ACCAATGCAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAAATTGCAAAT-AAAATG-TATTTAAC-ACCGCCATTTGCTATTCATGTCTTAGAAGGTGGATATAA-AATG---C------CGCT----TTA-T--TTT-TTCCTAGAA-TTTGATACAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTAAG-ATCGACTGAAGT-AAA---------ACGATGAGA------CCTATTTTTGAT--G-GATATTGGAAATGAATAAACC-ATAAATTTCCACAGTATTTGGAAAAT---TGTTTTGTTGTAA-caa
gi|7 : A-TCGATTTA--CTGCACAACAGAAAG-TTGT--GAAAGAAAAACAAAACGCA-T-TATCGACATCCAGTTCC-TAA--A-----TA----GACCAACTCCTTTTAGACT--AG-T--------GG-GTAA-GATGG--CCCATG--CAAGTAAAAAAATGCC-ATAAA-TCGA-AAAAAGACGAA-CGTGATACTCTAGGCAATTTAAT-Acga
gi|8 : GGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCA---TAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCC-TTgccc
gi|9 : gGGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCA---TAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCC-TTc
Alignments
lowQualScore : 11 22222222222 22222 11111111111 11 11 22 111 11111 11111 1 3333333333 1111 1111 111 11111 11 111 11111 11 22 11 111 1 444444444444444 1 22 4444444 1 1 3333 1 1 4444444444
lowQualScore : 4 1 55 3333 3 4 55 66666666666 2 8 55 00000 7777 66666666666 1 8 4 8 55 55 8 11 0 0 4 5 5 5 3 5 5 5 00 5 3 000 5 44444 5 5 33333 5 0 77 5 88 6 6 6 1 6 3 6 7 0 1 3 2 3 6 2 2 6 7777777777 4444 666 99 6 99 3 3 5 3 4444 6 1 6 6 111 6 6 66666 6 6 6 0 0 8 22 0 2 555 1 6 33333 1 2 7 77 33 8 1 1 33 777 7 2 0 6 444444444444444 3 00 3333333 3 3 6666 3 3 2222222222 7 1
lowQualScore : . . .. .... . . .. ........... . . .. ..... .... ........... . . . . .. .. . .. . . . . . . . . . . .. . . ... . ..... . . ..... . . .. . .. . . . . . . . . . . . . . . . . . .......... .... ... .. . .. . . . . .... . . . . ... . . ..... . . . . . . .. . . ... . . ..... . . . .. .. . . . .. ... . . . . ............... . .. ....... . . .... . . .......... . .
lowQualScore : 0 4 00 6666 2 0 55 88888888888 5 0 55 00000 7777 55555555555 2 0 0 0 44 00 2 00 5 7 0 0 4 0 2 0 0 7 00 0 5 000 7 33333 7 7 33333 7 7 99 0 33 7 7 7 7 7 2 7 5 8 0 2 5 2 7 5 5 7 3333333333 2222 888 22 7 22 5 2 7 7 2222 7 0 7 7 777 7 7 77777 7 7 7 8 6 0 55 2 5 000 0 5 22222 0 5 3 00 88 8 0 0 88 555 0 5 0 7 000000000000000 3 00 3333333 3 3 3333 3 3 0000000000 3 0
consensus : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TCGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GTA--TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
Reference ( family-1355 ) : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TCGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GTA--TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
gi|1 : GGCACCAA-TCGATCTA--CTGCACAACCAAAAGGTTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGTTTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCTGTG--CAAATTAAACTGGACCTTTAAA-TTGA-TAAAAGAAG-A-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATTCACTCTGAT---GGCTTGTTTGACG-C-----TGAAATTT-G-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACAAAAGCACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTAAACCACCGTCATTTGCTAT-CATGT-TTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TTGGTTGTGC-AGTA-G-ATCGACTGAATT-AAACAAATGAGAATGATGAAAGAAAAACTTATATTCTATTAGAAAGATTGGAAATCAATAGTCCGGTA--TTTCCAAATGATTTTG--AATTAATATATTTTTGTAA-GATTTTTTTATCATTC-AGGTCCGTGTGTG-TTTTTGT-GTT-----GGGGGGGGGGGGG-------ATTCC-AC-ATCATC---TCATAATTTGG-AGAAATTATGTCA-TTGA---A---TTATACGTATG-TTTATCAATATCCTGCATGTTAAATAACAGATAATGTATTTT
gi|10 : GGCACCAA-TCCACCAA--CTGTA---------A-TTGT--GAAAGAAAAAT----AATG-T-GATTGAAATCCGGTTGT-GTA--G-----TACTTAGACG--CCA----TAAATTC-AA-CTGCGTCGGAG-CTAA-ATTGA--TCCCTG--TAAATTAAATTTGGCC-TTCAA-TCAA-ACAA
gi|11 : A--TATCCACATTATTTGG--AAT---T-TATTTTT---------TTTTTAT--TTC-GG------------TTTGTGT-GTTGAGGGGGGGGGGGGTGAA-------ACTCC-AC-ATCATCCTACCATAAGTTCG-AGAAATAATGTCA-TTGAGTTAACTTTGTACGCAGGTT
gi|12 : A----GACC--CTC----TAGATTC-AG-TAGCGTAGGTC-GTAA-TTTGA--ACCATA--CAAATTAAATTGGGCC-TTAAT-TCGACAAAAATAAGAA-TGTGACGCTCTGGCTTATTTGAT-ATCATAT-AA--TTCAT
gi|13 : AAGAA-TATGATGTTGCAGGCAATTTGAT-ATTCTAT-GA-TTTCATGGTAAGCAATACACACTGAT---GGCTCGTTTGACG-C-----TTGAATTT-G-TTT
gi|14 : GCACCAAATCGATCAA--CTGCACAACCGAGAG-CTGT--GAAAGAAAA--------------ATCAACATCCAGTTGT-GCA--G-----TA----GACC--C
gi|15 : CTCGGAT---GGCTCGTTTGACG-C-----TTACATTT-G-TTTTGTCGTGC
gi|16 : --T--TTT-ACCAATGAAGTT--GAACTTTTGGAGGAAAACACAGTC
gi|2 : GGCACCAA-TCGAT-TA--C-GCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-G-TCGACATCCGGTTGT-GCAAGG-----TA----GACA--CCCC---TATTTTC-AG-TTGCGTCGGGG-GTAA-GTTGAA-CCTGTG--CAAATTAAACTGGGCC-TTACA-TTGA-AAAAAGAAG---TGTGATGCTCTAGCAAATTTAATTATTCTAT-AACTT-CGTG-TA-GCATT-CACTCTGAT---GGCT-GTTTGACGGC-----TGAAATTTTG-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTTTACCAATGCAGTTTGAAACTTTTTAAC--AAACAC-GTCTCAAT-CCTTAT-CTATGTAA---TTTCAAAT-AAA-TGCTATT-AAC-ACCGT-ATTT-CTAT-CATGTCTTAGAAGGTG-ATATAA-A-TG---T------CGCT----T-ATT--TTT-T--CAAG-AATTTGATATAAATAAAGT----GAT-TGTGGCA-CG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGCAAGAA-GAATCGACTG-ATT-AAAC-AATGAGAATGATGAG---AAAAATTATATT-TATTAG-AAGATT-GAAATCAAT-GTCC-TTAT-TTTCCA-ATGATTTTG--AAT---TATATTTTTGTAAGGATTTTTTTATCATTCAAGG-TCGTG-GTGTTTTTTGTGGTTG-GGGGGGGGGGGGGGGGGGGAGGTATTCCTACAATCATCTT---ATAATTTGGAAGAAATTATGTCAGTTGA--TA---T--AATGTATGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
gi|3 : CACCAA-TCGATTTA--CTA-ACA-CCAGAAG-TTGT--GAAAGAAAAAT-----GCATG-AATCGACATCCGGTC-T-GTT--G-----CA----GA-T--CCCC---TAGATTC-AGATTGCGCCGGAA-GTAATCTTGA--CCCGTG--CAAATTCA--CGGCCC-TTGGATTTGA-AAAAAGAAGAATTTTGATG--TTAGGTAATTTAAT-ATTCTAT-TAC-TTCATGGTAAGCAAAAC-CTCTG-T---GGCTCGTTTGAAG-CTATATTTAAATGT-GTTTTTGTCGTGCGAGTCGGTAGTAAATAATTATTT-ACCAATGAAGTT--GAAC-TTTGGAGGAAAACACAGTCACAAGAC-TTGTTCTGTGTAAAA-TTGC-----------------AACCACCGCTCTTTGC-AT-CCTGTCTTAGAAGG-GGATATAA-CATA---TATGCATCACT----T-A-TTATTT-T--TAAAAAG--TGATATAAACAATATACACAATATAT-ACAG-GAAAAAT-GCTCG-TTTGCTCGGGGGAATTTACATGTAGGTAGTGC-AGTA-G-ATCAAGTTAATTGAAAC-AATAAGAGTGAT--GAGAAAAAGTTATATTCTAAT-G-CATATTGGAAA
gi|4 : GCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGTTGAAAAGAAAAAT-----GCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GATC--CTCC---TAGTTTC-AG-TTGCGTCGGGG-GTAA-ATTGA--CCTTTG--CAAAT-AAACTGGGCC-TTAAA-T-GA-AAAAAGAAGAA-TGTTATGCTCTAGGCAATTTAAT-ATTCTAT-GACAT-CATGGTAAGCAATATACTCGCAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--G--TTT-ACCAATGCTGTT--GAAC-TTTGAACAAAAACACAGTCTCAAT-C-TCATTCTATGTAAAA-TTGCGAATAAAAATG-TATTTAA-CATCGTCAGTTGCTAT-CATGTCTTAGAAGGTGGATAT-A-AATA---------TCGCT----T-A-T--TTT-T--CACGAAATTTGATATAAATAGAAT----GAT-T-T-GCAGGG---GATCGCCCG-TTTGTTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTAAAGT-A
gi|5 : CACCAA-TCGACCTAA-CCGCGCAACCAAAAG-TTGT--GAAA-AAAAAT----CGCA-T-GATCGACATCTGGTTGT-GCA--G-----TA----GA---------------TTC-AG-TTGTGTCGGGG-GTAA-GTTGG--CCCGTG--CAAATCAAATTATGCC-TTGAA-TAAC-AAAAATAAGAA-AGTTGCGCTCTGAGCATTTTCAT-ATTCTATGAA--TTCATAGTAAGCAATACATTCTGATAGCGGCTCGTCAGACG-C-----TTGGATTT-G-TTTCGACGTGCGAGTCTCTACTGAAT--T--GTT-ACCTTTGAAGTT--GAACT--------AAAAC-CAACTCCAGT-C-TTACTCTTTGTAAAA-TTGCAAAT-AAAATT-TCCCTAACAACACCCA------A---------TAGAA--TACACCTAACAACGCCCT-----TTGCTGTCGT-G-T--TTTGT--C----ACTTCCATCTCAAGAAA------GAT-TGC-GCAGGA---AATCGCCCGTTTTGTATAGAAG-ATTT-----TGGGCTGTGC-AGTA-G-ATCGAC
gi|6 : -ACCAATGCAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAAATTGCAAAT-AAAATG-TATTTAAC-ACCGCCATTTGCTATTCATGTCTTAGAAGGTGGATATAA-AATG---C------CGCT----TTA-T--TTT-TTCCTAGAA-TTTGATACAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTAAG-ATCGACTGAAGT-AAA---------ACGATGAGA------CCTATTTTTGAT--G-GATATTGGAAATGAATAAACC-ATAAATTTCCACAGTATTTGGAAAAT---TGTTTTGTTGTAA-caa
gi|7 : A-TCGATTTA--CTGCACAACAGAAAG-TTGT--GAAAGAAAAACAAAACGCA-T-TATCGACATCCAGTTCC-TAA--A-----TA----GACCAACTCCTTTTAGACT--AG-T--------GG-GTAA-GATGG--CCCATG--CAAGTAAAAAAATGCC-ATAAA-TCGA-AAAAAGACGAA-CGTGATACTCTAGGCAATTTAAT-Acga
gi|8 : GGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCA---TAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCC-TTgccc
gi|9 : gGGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA-C--GCCA---TAAATTCAAA-CTGCGTCGGAGCTTAA-ATTGAATCCC-TGGTTAAATTAAATTTGGCC-TTc
blockSeqs : A A AT ACAA A . TG AAAACGCAT G G AG TTACT CTTA CCAACTCCTTT A A A C TC AT C GT . T C C A T T G CT T A AGC G TATAT T T AATTA T TG T GG A C A A A A C T C T T G T T C G C TATGCAT GTCG AT TA G TC A A A G ACAC A G G C AAA T A ACATG A A A G C G AGA A C TAGA G G A T AA C T G AA . A G G C AAGGTCGTGGTGT G GA GGGAGGT T A CTAC A G GTTAACTTTG T A
blockSeqs : . A AT ACAA A . . AATGT G G . TTACT . CACCCC A A . C A AT A GT . . C . A . . . CA T A . . . . . T . . T GG . . . G . A . T C C T G T . C G . CCCTT . TA . . . A A G A . . A . G . . . . . . . . C G A G T TGC T G . A T C G T . . G G . . GG . G . . . TT . . TAT T
blockSeqs : . T A ACAA A . . CGCAG G . . . . TCCTCC T . . . T A G . . . T . A . . . T T A . . . . . T . . T CA . . . A . A . T A C G G T . C C . T . A . . . A A A A . . G . G . . . . . . . . . . . C . GG T . . . T G . . . . .
blockSeqs : . T . GCAA A . . GCATG G . . . . CGCCA A . . . G . G . . . T . A . . . C T A . . . . . G . . T CA . . . A . . . . . C T . . . C G . T . A . . . T . C G . . G . C . . . . . . . .
blockSeqs : . T . ACAA A . . CGCAT G . . . . CCCTC T . . . A . T . . . A . A . . . . . . . . . . . T . . . C . . . . . . . . . . . . . . . . . C . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . ACA A . . AAAGT C . . . . TCCCC A . . . G . G . . . C . A . . . . . . . . . . . . . .
blockSeqs : . T . A . . . AAAGT T . . . . CGCCA A . . . G . A . . . . . . . .
blockSeqs : . A . . . . . GCAG T . . . . CGCCA A . . . A . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . A . . . .
blockSeqs : .
blockSeqCons : CGCCA****** C* T*********
originalCons : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACC--CCCC---TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TCGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AACTTTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATG---T-----TCGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GTA--TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
finalCons : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GACGCCA------TAGATTC-AG-TTGCGTCGGGG-GTAA-GTTGA--CCCGTG--CAAATTAAATTGGGCC-TTAAA-TCGA-AAAAAGAAGAA-TGTGATGCTCTAGGCAATTTAAT-ATTCTAT-AAC-TTCATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAACCACCGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAA-AATGT---------CGCT----T-A-T--TTT-T--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GTA--TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
Alignments
lowQualScore : 11 22222222222 22222 1111 333333333 11 11 11 111 11111 11111 111 555555555555555555555 22222222 111111 1111 111 11111 11 111 11111 2222222 11 111 1 444444444444444 1 22 4444444 1 1 3333 1 1 4444444444
lowQualScore : 4 1 55 3333 3 4 55 66666666666 2 8 55 00000 7777 0000 000000000 1 8 4 8 55 55 8 11 0 0 4 00 5 0 5 5 1 3 5 3 000 5 44444 5 5 33333 5 0 77 5 88 6 6 6 1 6 3 6 7 555 666666666666666666666 1 6 1 3 2 3 3 11111111 111111 99 99 4444 6 1 6 6 111 6 6 66666 6 6 6 0 0 8 22 0 2 555 1 6 33333 1 2 7 2222222 8 1 1 33 777 7 2 0 6 444444444444444 3 00 3333333 3 3 6666 3 3 2222222222 7 1
lowQualScore : . . .. .... . . .. ........... . . .. ..... .... .... ......... . . . . .. .. . .. . . . .. . . . . . . . . ... . ..... . . ..... . . .. . .. . . . . . . . . ... ..................... . . . . . . . ........ ...... .. .. .... . . . . ... . . ..... . . . . . . .. . . ... . . ..... . . . ....... . . . .. ... . . . . ............... . .. ....... . . .... . . .......... . .
lowQualScore : 0 4 00 6666 2 0 55 88888888888 5 0 55 00000 7777 1111 444444444 2 0 0 0 44 00 2 00 5 7 0 44 0 1 0 0 1 0 7 5 000 7 33333 7 7 33333 7 7 99 0 33 7 7 7 7 7 2 7 5 888 777777777777777777777 0 7 0 2 5 2 2 22222222 000000 22 00 2222 7 0 7 7 777 7 7 77777 7 7 7 8 6 0 55 2 5 000 0 5 22222 0 5 3 8888888 8 0 0 88 555 0 5 0 7 000000000000000 3 00 3333333 3 3 3333 3 3 0000000000 3 0
consensus : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GA--CNCCN--------TAGATTC-AG-TTGCGTCGGGG-GTAAG-TTGA--CCCGTG--CAAATTAAATTGGGCCTT-AAATC-GA-AAAAAGAAGAATGT-GATGCTCTAGGCAATTTAAT-ATTCTATGACTT-CATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAAC--CAC---------------------CGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAAAAT------G-TCGCTT-A-T--TTTT--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GT--A-TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
Reference ( family-1355 ) : GGCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GA--CGCCA--------TAGATTC-AG-TTGCGTCGGGG-GTAAG-TTGA--CCCGTG--CAAATTAAATTGGGCCTT-AAATC-GA-AAAAAGAAGAATGT-GATGCTCTAGGCAATTTAAT-ATTCTATAACTT-CATGGTAAGCAATACACTCTGAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACGAAAACACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTTAAC--CAC---------------------CGCCATTTGCTAT-CATGTCTTAGAAGGTGGATATAAAAT------G-TCGCTT-A-T--TTTT--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTGAATT-AAAC-AATGAGAATGATGAGAGAAAAANTTATATTCTATTAG-AANATTGGAAATCAATAGTCC-GT--A-TTTCCACATNATTTNG--AAT---TATATTTTTGTAA-GATTTTTTTATCATTC-GGG-CCGTG-GTG-TTTTTGT-GTTG-GGGGGGGGGGGGGGGG-------ATTCC-AC-ATCATCCT-CCATAATTTGG-AGAAATTATGTCA-TTGA--TA---TTGTACGTATGTTTTATCAATATCCNGCATGTTAAATAACAGATAATGTATTTT
gi|1 : GGCACCAA-TCGATCTA--CTGCACAACCAAAAGGTTGT--GAAAGAAAAAT----CGCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GA--CCCCCC-------TAGTTTC-AG-TTGCGTCGGGG-GTAAG-TTGA--CCTGTG--CAAATTAAACTGGACCTTTAAATT-GA-TAAAAGAAGA-TGT-GATGCTCTAGGCAATTTAAT-ATTCTATAACTTTCATGGTAAGCAATTCACTCTGAT---GGCTTGTTTGACG-C-----TGAAATTT-G-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTT-ACCAATGCAGTT--GAACTTTTGAACAAAAGCACAGTCTCAAT-C-TTATTCTATGTAAAA-TTGCAAAT-AAAATG-TATTAAAC--CAC---------------------CGTCATTTGCTAT-CATGT-TTAGAAGGTGGATATAAAAT------GTTCGCTT-A-T--TTTT--CAAGAAATTTGATATAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TTGGTTGTGC-AGTA-G-ATCGACTGAATT-AAACAAATGAGAATGATGAAAGAAAAACTTATATTCTATTAGAAAGATTGGAAATCAATAGTCCGGT--A-TTTCCAAATGATTTTG--AATTAATATATTTTTGTAA-GATTTTTTTATCATTC-AGGTCCGTGTGTG-TTTTTGT-GTT-----GGGGGGGGGGGGG-------ATTCC-AC-ATCATC---TCATAATTTGG-AGAAATTATGTCA-TTGA---A---TTATACGTATG-TTTATCAATATCCTGCATGTTAAATAACAGATAATGTATTTT
gi|10 : GGCACCAA-TCCACCAA--CTGTA---------A-TTGT--GAAAGAAAAAT----AATG-T-GATTGAAATCCGGTTGT-GTA--G-----TACTTAGA--CGCCA--------TAAATTC-AA-CTGCGTCGGAG-CTAAA-TTGA--TCCCTG--TAAATTAAATTTGGCCTT-CAATC-AA-ACAA
gi|11 : --A-TATCCACATTATTTGG--AAT---T-TATTTTT---------TTTTTAT--TTC-GG------------TTTGTGT-GTTGAGGGGGGGGGGGGTGAA-------ACTCC-AC-ATCATCCTACCATAAGTTCG-AGAAATAATGTCA-TTGAGTTAACTTTGTACGCAGGTT
gi|12 : A----GA--CCCTC--------TAGATTC-AG-TAGCGTAGGTC-GTAAT-TTGA--ACCATA--CAAATTAAATTGGGCCTT-AATTC-GACAAAAATAAGAATGT-GACGCTCTGGCTTATTTGAT-ATCATATAA-TT-CAT
gi|13 : AAGAATAT-GATGTTGCAGGCAATTTGAT-ATTCTATGATTT-CATGGTAAGCAATACACACTGAT---GGCTCGTTTGACG-C-----TTGAATTT-G-TTT
gi|14 : GCACCAAATCGATCAA--CTGCACAACCGAGAG-CTGT--GAAAGAAAA--------------ATCAACATCCAGTTGT-GCA--G-----TA----GA--C
gi|15 : CTCGGAT---GGCTCGTTTGACG-C-----TTACATTT-G-TTTTGTCGTGCcc
gi|16 : --T--TTT-ACCAATGAAGTT--GAACTTTTGGAGGAAAACACAGTC
gi|2 : GGCACCAA-TCGAT-TA--C-GCACAACCAAAAG-TTGT--GAAAGAAAAAT----CGCA-G-G-TCGACATCCGGTTGT-GCAAGG-----TA----GA--CACCCC-------TATTTTC-AG-TTGCGTCGGGG-GTAAG-TTGAA-CCTGTG--CAAATTAAACTGGGCCTT-ACATT-GA-AAAAAGAAG--TGT-GATGCTCTAGCAAATTTAATTATTCTATAACTT-CGTG-TA-GCATT-CACTCTGAT---GGCT-GTTTGACGGC-----TGAAATTTTG-TTTTGTCGTACGAGTCGGTAGTGAAT--T--TTTTACCAATGCAGTTTGAAACTTTTTAAC--AAACAC-GTCTCAAT-CCTTAT-CTATGTAA---TTTCAAAT-AAA-TGCTATT-AAC---AC---------------------CGT-ATTT-CTAT-CATGTCTTAGAAGGTG-ATATAAA-T------G-TCGCTT-ATT--TTTT--CAAG-AATTTGATATAAATAAAGT----GAT-TGTGGCA-CG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGCAAGAA-GAATCGACTG-ATT-AAAC-AATGAGAATGATGAG---AAAAATTATATT-TATTAG-AAGATT-GAAATCAAT-GTCC-TT--ATTTTCCA-ATGATTTTG--AAT---TATATTTTTGTAAGGATTTTTTTATCATTCAAGG-TCGTG-GTGTTTTTTGTGGTTG-GGGGGGGGGGGGGGGGGGGAGGTATTCCTACAATCATCTT---ATAATTTGGAAGAAATTATGTCAGTTGA--TA---T--AATGTATGTTTTATCAATATTCAGCATGTTAAATAACAGATAATGTATTTT
gi|3 : CACCAA-TCGATTTA--CTA-ACA-CCAGAAG-TTGT--GAAAGAAAAAT-----GCATG-AATCGACATCCGGTC-T-GTT--G-----CA----GA--TCCCC--------TAGATTC-AGATTGCGCCGGAA-GTAATCTTGA--CCCGTG--CAAATTCA--CGGCCCTT-GGATTTGA-AAAAAGAAGAATTTTGATGTT--AGGTAATTTAAT-ATTCTATTACTT-CATGGTAAGCAAAAC-CTCTG-T---GGCTCGTTTGAAG-CTATATTTAAATGT-GTTTTTGTCGTGCGAGTCGGTAGTAAATAATTATTT-ACCAATGAAGTT--GAAC-TTTGGAGGAAAACACAGTCACAAGAC-TTGTTCTGTGTAAAA-TTGC-----------------AAC--CAC---------------------CGCTCTTTGC-AT-CCTGTCTTAGAAGG-GGATATAACATATATGCA-TCACTT-A-TTATTTT--TAAAAAG--TGATATAAACAATATACACAATATAT-ACAG-GAAAAAT-GCTCG-TTTGCTCGGGGGAATTTACATGTAGGTAGTGC-AGTA-G-ATCAAGTTAATTGAAAC-AATAAGAGTGAT--GAGAAAAAGTTATATTCTAAT-G-CATATTGGAAA
gi|4 : GCACCAA-TCGATCTA--CTGCACAACCAAAAG-TTGTTGAAAAGAAAAAT-----GCA-G-GATCGACATCCGGTTGT-GCA--G-----TA----GATCCTCC---------TAGTTTC-AG-TTGCGTCGGGG-GTAAA-TTGA--CCTTTG--CAAAT-AAACTGGGCCTT-AAAT--GA-AAAAAGAAGAATGT-TATGCTCTAGGCAATTTAAT-ATTCTATGACAT-CATGGTAAGCAATATACTCGCAT---GGCTCGTTTGACG-C-----TTAAATTT-G-TTTTGTCGTGCGAGTCGGTAGTGAAT--G--TTT-ACCAATGCTGTT--GAAC-TTTGAACAAAAACACAGTCTCAAT-C-TCATTCTATGTAAAA-TTGCGAATAAAAATG-TATTTAA---CAT---------------------CGTCAGTTGCTAT-CATGTCTTAGAAGGTGGATAT-AAAT------A-TCGCTT-A-T--TTTT--CACGAAATTTGATATAAATAGAAT----GAT-T-T-GCAGGG---GATCGCCCG-TTTGTTCAGGGG-ATTT-----TGGGTTGTGC-AGTA-G-ATCGACTAAAGT-A
gi|5 : CACCAA-TCGACCTAA-CCGCGCAACCAAAAG-TTGT--GAAA-AAAAAT----CGCA-T-GATCGACATCTGGTTGT-GCA--G-----TA----GA-------------------TTC-AG-TTGTGTCGGGG-GTAAG-TTGG--CCCGTG--CAAATCAAATTATGCCTT-GAATA-AC-AAAAATAAGAAAGT-TGCGCTCTGAGCATTTTCAT-ATTCTATGAATT-CATAGTAAGCAATACATTCTGATAGCGGCTCGTCAGACG-C-----TTGGATTT-G-TTTCGACGTGCGAGTCTCTACTGAAT--T--GTT-ACCTTTGAAGTT--GAACT--------AAAAC-CAACTCCAGT-C-TTACTCTTTGTAAAA-TTGCAAAT-AAAATT-TCCCTAACAACACCCAATAGAATACACCTAACAACGCCCTTTGCTGT-CGTGTTT------------------T------G-TCACTT-C-C--ATCT--CAAGAAA---------------------GAT-TGC-GCAGGA---AATCGCCCGTTTTGTATAGAAG-ATTT-----TGGGCTGTGC-AGTA-G-ATCGAC
gi|6 : -ACCAATGCAGTT--GAACTTTTGAACAAAAACACAGTCTCAAT-C-TTATTCTATGTAAAAATTGCAAAT-AAAATG-TATTTAAC---AC---------------------CGCCATTTGCTATTCATGTCTTAGAAGGTGGATATAAAAT------G-CCGCTTTA-T--TTTTTCCTAGAA-TTTGATACAAATAAAGT----GAT-TGT-GCAGCG---GATCGCCCG-TTTGCTCAGGGG-ATTT-----TGGGTTGTGC-AGTAAG-ATCGACTGAAGT-AAA---------ACGATGAGA------CCTATTTTTGAT--G-GATATTGGAAATGAATAAACC-ATAAA-TTTCCACAGTATTTGGAAAAT---TGTTTTGTTGTAA-caa
gi|7 : A-TCGATTTA--CTGCACAACAGAAAG-TTGT--GAAAGAAAAACAAAACGCA-T-TATCGACATCCAGTTCC-TAA--A-----TA----GA--C--CAACTCCTTTTAGACT--AG-T--------GG-GTAAG-ATGG--CCCATG--CAAGTAAAAAAATGCCAT-AAATC-GA-AAAAAGACGAACGT-GATACTCTAGGCAATTTAAT-Acga
gi|8 : GGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA--CGCCA--------TAAATTCAAA-CTGCGTCGGAGCTTAAA-TTGAATCCC-TGGTTAAATTAAATTTGGCCTT-gccc
gi|9 : gGGCACCAA-TCCACCAAATCTGT-----TAAA---TTGT--GAAAGAAAAAT-----AAA-GTGATTGAAATCCGGTTTTGGTA--GTTACTTA----GA--CGCCA--------TAAATTCAAA-CTGCGTCGGAGCTTAAA-TTGAATCCC-TGGTTAAATTAAATTTGGCCTT-c