lowQualScore : 1 666666 11 222 2 777777777777 1 1 1 111 2222 1111 111 11 44444 1111 11111 22 2222222222222222 222222222222222 2222222 666666666666666666666666666 1111 1111 1 222222222222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333333333 11 2222 333 11111 22222 3333333333333 1 1 2222222 22222 1 111 2222 1 11 11 111 22222222 222222222 1 222222 222 222222222 1 11 2222222222 88888888888888888888888 11 1
lowQualScore : 6 3 0 1 55 555555 9999 6 11 8 333 0 444444444444 3 0 0 777 0000 5 7777 444 6 11 0 5 0 6 8 00000 8 4444 3 11111 1 7 0 1 00 777 5 4 6666666666666666 66 4 66 777777777777777 44 0 888 9999999 5 0 111111111111111111111111111 77 7777 5 4444 6 4 5 4 77 6 7 444444444444 6 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 999999999 88 3333 222 5 44444 888 77 1 6 2 66666 3 4 4444444444444 0 0 9999999 2 22222 0 000 1111 3 0 0 8888 99 8 8 0 33 8 444 8 11111111 5 5 111111111 888 5 5 5 3 444444 3 88888 111 5 888888888 1 1 6 33 9999999999 8 8 8 8 3 11111111111111111111111 3 8 88 66 3 88 6 3
lowQualScore : . . . . .. ...... .... . .. . ... . ............ . . . ... .... . .... ... . .. . . . . . ..... . .... . ..... . . . . .. ... . . ................ .. . .. ............... .. . ... ....... . . ........................... .. .... . .... . . . . .. . . ............ . . ..................................................................................................................................... ......... .. .... ... . ..... ... .. . . . ..... . . ............. . . ....... . ..... . ... .... . . . .... .. . . . .. . ... . ........ . . ......... ... . . . . ...... . ..... ... . ......... . . . .. .......... . . . . . ....................... . . .. .. . .. . .
lowQualScore : 5 2 5 8 33 000000 7777 7 00 0 555 0 555555555555 3 0 0 555 2222 8 0000 000 6 00 8 0 8 7 0 00000 0 8888 8 77777 7 1 2 1 66 888 7 4 4444444444444444 11 4 11 888888888888888 44 2 444 2222222 7 7 222222222222222222222222222 55 0000 0 2222 7 8 2 0 77 7 0 000000000000 7 7 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555555555 55 0000 777 7 33333 888 99 9 7 5 00000 2 0 2222222222222 0 0 0000000 5 55555 0 555 2222 2 0 8 2222 00 0 0 8 00 0 000 0 00000000 0 0 888888888 888 7 7 7 3 777777 0 99999 000 7 333333333 7 7 7 66 0000000000 0 0 0 0 2 44444444444444444444444 8 0 88 88 7 33 7 3
consensus : CGGAAGCGCCTATTGCAATCGCTTGTATGACCTTCTACGTC----AC--GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACANNAACAAAAGGGCACGCTATTAGAAAACT-CGCT-AATTA-AATTC---GGGATAACCATCA-GAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTTAT--ATTTTATTATCATTCNTGAATCTAAAAA-TTG-AGCAAAGA-AA--CAA-CGGCTAAGCGGTCTCTAA-A--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGT-GT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACNCGGTATGTAC---ATAAGTATTGATT-AAAT--------AAAGT--------------TATTATTAAACAATTAAACAAACGAAA----TGAA----ATA-TACATGTTGTAAGCNGTCAAAAAANTTG-T-GAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGA-GACA---CA-GT--TAT-ATAT-------AGTGAGC--A--TACTT---ATT---TCG-CG---TACG--NAAAAC--G--AAATGCGGCAA-A----TGANAAANATG-TTCNAATTTA--TTTTAANGAT--TTTTGGTATATC-------ATGAAAAATATAGAANATTCAGGACTTCTTTATTTTCGTATGAG-ATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGNGTGTCCTTATGATACAGTGCAGTATCTACATGTACATGCAA------TA-G---TACC-C-TT---G---AAGGGAAGAA-ACA-C-GAGA-TATTATCTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-A-GTCAG-TG-GTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--T--TGATGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATAN--AAATAT-TT-CA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
Reference ( gi|1 ) : CGGAAGCGCCTATTGCAATCGTTTGTGTGACCTTCTACG------AC--GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACAATAACAAA-GGGCATGC--------AACT-TGCT-AATTA-AATTC---GGGATAACCATCA-GA-CAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGA-A---CAA-CGGCTAAGCGGTCTCTAA-A--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGT-GT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGGTATGTAT---ATCAGTATTGATT-AAGT--------AAAAT--------------TATTATTAAACAGTTAAACAAACGAAA----TGAA----ATA-TACGTGTTGTAAGCGGTCAAAAAAATTG-T-GAGCGTCTAATTTGATTACAATATTGAAATTG----TCTA-ACAACTGTTTATACGGGTTTGCAGA-G-CAC--CA-GT--TAT-ATAT-------AGTGACC--A--TACTT---ATT---TTG-CA---TACG--GAAAA---G--AAATGCGGCAA-A----TGACAAACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATATT-------GTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAG-A-AT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATGTAA------TA-G---TACC-C-TT---G---AAGGGAAGAA-ACA-C-GATA-TATTATCTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-A-GTCAG-TG-GTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--T--TGATATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATAG--AAATA--TT-CA-TG-T-GCATGCTATATGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|22 : CGGAAGCACCTATTACAATCGTTTGTGCGACCGTTTACGTC----AC--AGAGGTCAGG-AACCCTTTGTCATGGTACT--CC-AAACGGAATTCA
gi|27 : gCGGAAGCGCCTATTGCAAT-------------TTCTACGTC----AC--GGAGGCCAGG-ATCC
gi|6 : gGGAAGT--CTATTGCAATTGCTTATATGACCTTCTATGTC----AC--GGAGGTCAGG-GGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAA-GGGCATGT--------AATT-CGCT-AATCA-AACTCTAGNNNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNN---NNCTAATCAAATTTGCGATAA-----AAATC--AAAA-TGG-GGTCACGACG---CAA-CGGATAAGAGGTCTCTAACA--GT---------------------AACGAAACAAAC--------ACCTCCCTTAGACTATATTTAGTCAAT-GT---------AA--A-----TAC--AC-G--TATCT---------------TAATCAACACAtccaaacgtaact
gi|3 : GAAGCGCCTAT-GCAATTGCTTATGTGACCTTCTACGTC----AC--G-AGGTCAGG-AACACTTTTTCATGGTACTATCC-AAATGGAATTCACATAAACAAAAGGGC-CGCTATTAGAAAACTCTGCTTAATTTTAATTC---GAGATAACCATCACAA-CAGAGTT------GTTAAAAACAGATTTTCAGA----CGAA---CACTTAT--ATTTTATTATCATTCATGAATCTAAAAA-TTG-ACCAAAGA-AA--CAA-TGGCTAAGCGGTTTCTAA-C--GTGACGCACTCTAAATA-ATA-CAACGAATCAGACAGTGAATTACCTCTCTTTG--TAAAT---ATCAGA-GT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGATATATACATAATAAGTATTGATTAAAGTAAGTTAAAAAGATTTAA----------TATTATTAAACAATTAAACAAACGAAA----TGAA----ATA-TTCATGTTGTAAGCCGTC-AGAAAATTGTT-GAGTGCCTAAATTGATTATAATATTGAAATCC----TTT---TAACTGTTTATACAGGTTTGCAGA-GACACAATA-G---TAT-ATATTA-----AGTGAGC--A--GACGC---A-A---TCA-CATAGTACG--GGGGGT--A--AAACGCGGCAA-A----TGAAAGAGATGATTTTTATTTAATTTTTAATGAG--TTTTGGTATATC-------ATGAAAA--ATAGGACATTCGGGACTTCTTTATTTTTGTATGAG-ATAT-TCTATGGTCCTTATTGTATA---TTGAAACCCTTTTT--CCTTATGTCGTTTTATTGC-ATTGGGTGTCCTTATGATA-----CAGTATCTA--------------------A-G---TACC-CGCTCAAG---AAGGGAAGAACAC--C-GAAA-TATCATCTG----TTCCTTTATTTAATTGTATACACGATT-TT-TAATTCAAT-ATGTCTT-TG-GTGAACATAGAAATGT-A--C-----TG--AGCTG-AAT-----------AACCGAAGAAACA
gi|21 : TTTG-ATGACTTTCTACGTCACATACTAGTAGGTCATTCAGTTCTTTTATATGGTACT--CCAAAACGGAGTTTAC-ATAAtt
gi|25 : ctacgcgaaagcGTATGACCT---ATGTT----AC--AAAGCTTAAG-AGCCCTTTTTTGTGGTACT--CC-AAACGGAATTCAC-ATAAa
gi|2 : T-TGCT-AATTA-AATTC---GGGATAACCATCA-GAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGA-AA--CAA-CGGCTAAGCGGTCTCTAA-A--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGT-GT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGGTATGTAT---ATCAGTATTGATT-AAGT--------AAAAT--------------TATTATTAAACAGTTAAACAAACGAAA----TGAA----ATA-TACGTGTTGTAAGCGGTCAAAAAATTTG-T-GAGCGTCTAAATTGATTACAATATTGAAATAG----TCTA-ACAACTGTTTATACGGGTTTGCAGA-GACA---CA-GT--TAT-ATAT-------AGTGACC--A--TACTT---ATT---TTG-CA---TACG--GAAAA---G---AATGCGGCAA-A----TGAC-AACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATATA-------GTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGAA-AT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATGTAA------TA-G---TACC-C-TT---G---AA-GGAAGAA-ACACC-GATA-TATTATCTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--TAA-GTCAG-TG-GTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--T--TGATATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATAG--AAATAT-TT-CA-TG-T-GCATGCTATA-GTGTATAAA-TGTA------CATGTA-T-TCATTTTTTTTTTTTATTGTTGAC--TACAATTT-TATAa
gi|16 : T-AATTA-AATTC---GGGATAGCCATCA-GAACAGGATAACGGCATTTAAAAACATATTTTCAAA----AGAA---CATGTAT--ATTTTATTACCATTCATGAATCTAAAAA-Tta
gi|4 : tTTCAAGTTAACGAGAGTCACCTGT--ATTTTATTATCATTCCTGAATCTAAAAAATTGGAGCAAAGA-AA--CAAACGGCTAAGCGGTCTCTAA-A--GTAACGCGCTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATAAGT-GT---------AA--AAACAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAAAACGGTATGTAC---ATACGTATTGATT-AAAT--------AAAGTCAACAAGAATTTAATATTATTAAAC--TAAAACAAAAGAAAAAAATGAA----ATA-TGCATGTTGTAAGCGGTCAAAAAGTTTG-T-GAGTGTCTAAATTGATTACAATATTGAAATAT----TCTA-ACAACTGTTTATACGGGTTTGCAGA-GACA---CA-GT--TAT-ATAT-------AGCGAGC--A--TACTT----TT---CAGCCA---TATGTTTAATA---G---AATGCGG------------TAAACAT--T-------------------------TTGGTATATC-------ATGAAAAATATA--------------TCTTTATTTTCGTATGAG-CTAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTAC
gi|11 : cgagaacttcgagagatcgaag-TTT-AGCAAAGA-AACACAA-CGGCAAAGCGGTCTCTAG-AACGTAACGCACTCGAAATA-A-AATAACGAATCAAACAGAGAATTACCTCTCTTTG--TAAAT---ATCAGT-GTCAGTGACGCAAGGGA-CAATGC--AATATTTATCACCGGGGTGGGACCGGTNNNNNNNNNA-GTAAACCCGGTATATATAC-ATAAGTATTGATT-AAAT--------AAAGT--------------TA
gi|18 : CTCTAAATAGA-A-TAAAGAAGAAAACGGTGAATCGCATCTCATTGACTATGT---AATAAT-GT----------------CAGTGT--AA-A--TAATA---------------TAATCAACAT-----------GTATGCAT---A--AGTATTGA
gi|19 : TCTAAATA-A-AATAACGAAATAAAC-----GTT---TCCCTTTGACTAATT---GT--AT-TT---------AA--GT-CAGTGT--AA-A--TATCA---------------TATTCAACAT-----------GTGTGCAT---A--AGTTTTGATT-GA
gi|15 : aGTGAATTACCTCCCTTTG----ACT---AT--GTAAT---------AA--AGTCAATGTTAAA-A--TATTA---------------TAATCAGCATACATGTACAT-GTATGTGC---ACAAGTATTGATT-CAAT--------AGAGT--------------TAa
gi|5 : ---ATCAGT-GT---------AA--AT-CAGTAT--AA-A--TATCA---------------TAATCTACATACGTAAACACAGCATATA------CAG-----------AT--------AA--------------------TATTGAACAATTAAACAAACAAAA----T-AA----ATA-TACATGTTGTAATCCGTCAGAAAATTTT-T-GAGCGCCTAAATTGATTACAATATTGAAA-TG----CCTATTCAA-TGTTTATACCGGTTTGCAGA-GACAC--AATAC--TAT-ATATAGTGTAGAGTGAGCAAA--GACTTAGGACTGAGGTG-TG---TA-G--TAAAACATGACAAGTACGACAACATTCTTGA-AAAAATA-TTCAAAAATA--TTTTGAAAATGATTTTGGTATATTATATAGCATGAAAA--ATAGAATATTAAGTACTTCTTTACTTTTGTATGAG-ATAT-TCTATGGTCTT-----TGAAAGTTTGAAACCCTTTTac
gi|13 : CAAACAAAA----TTAGTTTTATGGTACATATTGAAAACAGTCAAGAATACTA-TTGGGCCTCCAAATTAATTATAATATGGAAATCACAATTCCA-GCAA------ATACGGGTATGCAGATG-CA----A-----TAT-ATAT-------AATAAGC--AGGCACAT---ATT---
gi|14 : A----ATA-TACCTATTGTAAGCTCTCAAAAAAAATT-T-GAACGCCTAAACTGGTTATAATATTGAAATTC----T-TA-TCAACTGTTTTGATGGGTTTGCAGA-GACA---CA-GTAGTATAATAT-------A-----C--A--TA-TT---ATcatggt
gi|17 : AGAAAATTCAGGACTTCTTTATTTTTGTATAAG-ATACATATATAGTCAA-----TATA---TTGAAACCCTT--------------------TTGCAAATGGGTGTCCTTATGATA-----CAGTATCTATAatagtgagcagac
gi|28 : TTCTTTGTTTTCGTACGAG---------------CT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTa
gi|7 : -AT-TCGATAGTCCT-----GATA---TTGAAACCCTTTTTTTCCTTTTGTCGTTTTATTGG-ATTGCGTGTCCTTATG-TACAGTGCAGTAACTACATGTACATGCAAGTAGACTA-GAAGTACC-C-TT---G---AAGGGAAGAA--CA-CCGAGA-TATTATCTG----TTCCT--ATTT-ATTGTTTACACGATT-TC-TAATTC--T-A-GTCAG-TG-GTG---TTAGAAATGC-A--CTGCTTTGCAAACTG-CATGT-C-------AAC---AGAGACAGTTT-G-TTAAAGGTACTG----GAAAGCAA--T--TACTGTCGAATAAAA-TACTATTGATAT---CTGGCATTTGTTAGG--CTCAAAAC
gi|24 : ---TTGAAACCCCTTTT--CCTTATGTCATGTTGTTGC-ATTGAGCGTCCTTATGATA-----CAGTATCTA
gi|8 : AA------TAAG---TACCAC-TT---AGCCAAGGGAAGAA-ACC-C-GAGAATATTAACTAAGCATCCCTTTATAT-GTTATA-GCACGATT-CA-TAATTCC-T-A-G-CA--TGTGTG---TTAAACATGT-AATC-----TGCAAACTGGCATGT-CA------A-C---AGAGACAG-TT-G-TTAAAGGTACT------GAATCAAATT--TGAT-TCGAATAGAA-T--TAATGG--C---T--GC-----CCA-GACCTCCAAACTTACTAAGATAAT-AATTT--TT-CA-TG-TAGCAGGTTAT-CGTG-ATAAACTGTACTACATCATCTACTATCA-TTTTTTTaaaatccttcaa
gi|10 : TGGATATAC-ATTGTCGTAATTC--T-A-GTTAGGTG-TTG---TTAGAAATGTAA--C-----T-CAAACTG-CATGT-CAC-----AGC---AGAGACAG-TT-GATTAAAGGTATT------GAAGCAA--T--TGATGGTGAACAAAAGTACTATTGG---------GC-TTTGT---A--CTCAAAACTTA-CAAGATAAGTAGATAATTT-CATTGTT-GCATGCTATATGT-T-TAAA------------ATGTATT-TCT-TTTTTTTTTTTTTT
gi|9 : ttaattgtacataAAAGTG-CATGT-CA------A-C---AGAGTCAG-TT-G-TTAAAGGTA--------------A--C--TG---TCGAATAGAA-TACTATTGAAAT---T--GCATTTGTTA-GA-CTCGAAACATACCAAGATAT--AGTTAT-TT-TA-TG-T-GCATG-TAT------------------------TTTGTT-TCG--TTTTTTTTTTATTATTGGCATTA-AATTCGTATA
gi|12 : acatgtagatctacatgcaatgataaaaatatggacggacaaaatgtcattctgtttcatgtagagttactagtttcttcttaaaaaattaaagatataaaatttacactcaAAACTG-CATGT-CA------A-C---AGA-ACAG-TTTG-TTAAAGGTACTT----GAAATCAA--TACTG----TGAATAGAA-TACTATTGAGATTGCT--GCTTTTGTTA-G--
gi|20 : ctggttcatgtgcaattgcaactagaatattctaatttttttctttaaaattgaagatatagaattttacacccaAAACTG-CATGCACATGTATCAAC---AGAGACAG-TT-C-TTAAAGATACTTAATTGGAAACAA--T--TACTGTCGAATAGAA-TACTgctgaa
gi|23 : agatataaaatttacactca--CTCAAAACTTACCAAGATAT--AAATA--TTTCA-TG-T-GCGTGCTATATGTGTATAA-------------ATGTATT-TCA-TTTTTTTTTT--------AC--TACAATTT-TATA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): ATTTATTTACTTTTTTATTGGCATCTATTTTTTTTTAAATCAATTATTCGTGGGTTTTTT
Alignments
lowQualScore : 111111 77777777 1 11 1111 111 1 22 2222222222222222 222222222222222 66666666666666 1111 1111 111111 3333333333333333 2222222 111 3333333333333 333333 4444444444444444 11 111 2222222 11 11111 11111 222222 111 2222222 22 1111 11 111 11111 111111 11111 111111111 11 111 22 4444444444444 11 1
lowQualScore : 3 0 6 1 0 666666 3 5 99 6 22 7 7 88 22222222 0 8 8 11 2 2 4444 111 4 99 3 5 6 1 99 6 99 5 5 0 0 5 22 777 1 0000000000000000 55 4 55 555555555555555 1 4 666 777 55555555555555 22 4444 2 2222 5 1 5 1 4 444444 88 4 5 1 4444444444444444 6666666 77 111 1 3 7777777777777 3 1 888888 8 2222222222222222 44 22 11 3 3 111 6666666 11 3 66 66 5 22222 777 66 0 5 1 55555 1 4 333333 8 444 8 8 1111111 0 8 11 3 8 7777 0 8 6 6 55 6 6 777 2 111 6 99 66666 4 4 777777 9 777 5 5 5 99999 0 66 5555 0 5 999999999 8 0 5 11 000 6 6 6 6 1 33 3 7777777777777 1 6 6 11 0 33 2 0
lowQualScore : . . . . . ...... . . .. . .. . . .. ........ . . . .. . . .... ... . .. . . . . .. . .. . . . . . .. ... . ................ .. . .. ............... . . ... ... .............. .. .... . .... . . . . . ...... .. . . . ................ ....... .. ... . . ............. . . ...... . ................ .. .. .. . . ... ....... .. . .. .. . ..... ... .. . . . ..... . . ...... . ... . . ....... . . .. . . .... . . . . .. . . ... . ... . .. ..... . . ...... . ... . . . ..... . .. .... . . ......... . . . .. ... . . . . . .. . ............. . . . .. . .. . .
lowQualScore : 2 8 4 7 9 444444 0 7 22 7 00 3 3 00 33333333 0 0 0 00 8 8 2222 777 0 22 3 7 7 7 22 7 22 0 0 0 2 1 11 000 6 2222222222222222 55 0 55 000000000000000 1 1 222 888 00000000000000 66 2222 5 1111 7 0 7 0 3 111111 77 3 7 7 9999999999999999 4444444 99 333 7 2 6666666666666 2 0 000000 0 0000000000000000 88 00 00 8 8 666 0000000 22 3 77 66 0 55555 888 99 5 7 0 44444 0 2 000000 0 000 0 0 2222222 8 0 66 2 0 0000 8 0 7 7 88 7 7 555 5 777 7 22 77777 4 4 222222 0 888 0 0 0 99999 2 99 4444 2 0 000000000 7 1 7 99 222 7 7 7 7 0 55 2 2222222222222 7 7 7 88 2 88 5 0
consensus : CGGAAGCGCCTATTGCAATCGCTTGTGTGACCTTCTACGTCAC------GGAGGTCA-GGAGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAG-ACACAGTA-TA------------TATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAATA----AAATGCGGCAA-A----TGACAAANAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATGTAA------TA-G---TACC-C-TT---G---AAGGGAAGAA-ACACCGANA-TATTATCTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
Reference ( family-1265 ) : CGGAAGCGCCTATTGCAATCGCTTGTATGACCTTCTACGTCAC------GGAGGTCA-GGAGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACANNAACAAAAGGGCACGCTATTAGAAAACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTTAT--ATTTTATTATCATTCNTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACNCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAATTAAACAAACG----AAATGAA----ATA-TACATGTTGTAAGCNGTCAAAAA-ANTTGTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAG-ACACAGT--TA------------TATAT-------AGTGAGC--A--TACTTATTTC------G--C---GTACGNAAAACG----AAATGCGGCAA-A----TGANAAANATG-TTCNAATTTA--TTTTAANGAT--TTTTGGTATAT-------CATGAAAAATATAGAANATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGNGTGTCCTTATGATACAGTGCAGTATCTACATGTACATGCAA------TA-G---TACC-C-TT---G---AAGGGAAGAA-ACA-CGAGA-TATTATCTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|1 : CGGAAGCGCCTATTGCAATCGTTTGTGTGACCTTCTACG--AC------GGAGGTCA-GGAGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACAATAACAAA-GGGCATGC--------AACTT-GCT-AATTA-AATTC--GGGATAACCATCAGA-CAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAA-CA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-AATTGTGAGCGTCTAATTTGATTACAATATTGAAATTG----TCTA-ACAACTGTTTATACGGGTTTGCAGAGCAC-CAGT--TA------------TATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAAA-G----AAATGCGGCAA-A----TGACAAACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------TGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGA-AT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATGTAA------TA-G---TACC-C-TT---G---AAGGGAAGAA-ACA-CGATA-TATTATCTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-A-TTCA-TG-T-GCATGCTATATGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|10 : TGGATATAC-ATTGTCGTAATTC--T-A-GTTA-GGTGTTG---TTAGAAATGTAA--C-----T-CAAACTG-CATGT-CAC-----AGC---AGAGACAG-TT-GATTAAAGGTATT------GAAGCAA--TTGA-TGGTGAACAAAAGTACTATTGG---------GC-TTTGT---A--CTCAAAACTTA-CAAGATAAGTAGATAATTTCATTGTT-GCATGCTATA--TGTTTAAA------------ATGTATT-TCT-TTTTTTTTTTTTTT
gi|11 : ttaattgtacata-TTT-AGCAAAGAAACACAA-CGGCAAAGCGGTCTCTAGAACGTAACGCACTCGAAATA-A-AATAACGAATCAAACAGAGAATTACCTCTCTTTG--TAAAT---ATCAGTGTCAGTGACGCAAGGGA-CAATGC--AATATTTATCACCGGGGTGGGACCGGTNNNNNNNNNA-GTAAACCCGGTATATATAC---ATAAGTATTGATTAAATAAAGT--------------TA
gi|12 : AAACTG-CATGT-CA------A-C---AGA-ACAG-TTTG-TTAAAGGTACTT----GAAATCAA--T--ACTGT-GAATAGAA-TACTATTGAGATTGCT--GCTTTTGTTA-G--
gi|13 : ctggttcatgtgcaattgcaactagaatattctaatttttttctttaaaattgaagatatagaattttacacccaCAAACA----AAATTAGTTTTATGGTACATATTGAAAACAGTCAAGAATACTATTGGGCCTCCAAATTAATTATAATATGGAAATCACAATTCCA-GCAA------ATACGGGTATGCAGAT-GCA-A----TA------------TATAT-------AATAAGC--AGGCACATATTgctgaa
gi|14 : A----ATA-TACCTATTGTAAGCTCTCAAAAA-AAATTTGAACGCCTAAACTGGTTATAATATTGAAATTC----T-TA-TCAACTGTTTTGATGGGTTTGCAGAG-ACACAGTAGTATAATATACATATTATAT-------AGTGAGC--A--GACcatggt
gi|15 : GTGAATTACCTCCCTTTGACTATGT---A-----AT---------AA--AGTCAATGTTAAA-A--TATTA---------------TAATCAGCATACATGTACATG---TATGTGC---ACAAGTATTGATTCAATAGAGT--------------TA
gi|16 : T-AATTA-AATTC--GGGATAGCCATCAGAACAGGATAACGGCATTTAAAAACATATTTTCAAA----AGAA---CATGTAT--ATTTTATTACCATTCATGAATCTAAAAA-Tac
gi|17 : tAGAAAATTCAGGACTTCTTTATTTTTGTATAAGATACATATATAGTCAA-----TATA---TTGAAACCCTT--------------------TTGCAAATGGGTGTCCTTATGATA-----CAGTATCTATA
gi|18 : CTCTAAATAGA-A-TAAAGAAGAAAACGGTGAATCGCATCTCATTGACTATGT---AATAATGT----------------CAGTGT--AA-A--TAATA---------------TAATCAACAT-----------G--TATG--C---ATAAGTATTGAa
gi|19 : TCTAAATA-A-AATAACGAAATAAAC-----GTT---TCCCTTTGACTAATT---GT--ATTT---------AA--GT-CAGTGT--AA-A--TATCA---------------TATTCAACA---------------TGTGTGC---ATAAGTTTTGATTGAA
gi|2 : aTT-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTGTGAGCGTCTAAATTGATTACAATATTGAAATAG----TCTA-ACAACTGTTTATACGGGTTTGCAGAG-ACACAGT--TA------------TATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAAA------GAATGCGGCAA-A----TGAC-AACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------AGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGAAAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATGTAA------TA-G---TACC-C-TT---G---AA-GGAAGAA-ACACCGATA-TATTATCTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--TAA-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-ATTTCA-TG-T-GCATGCTATA-GTGTATAAA-TGTA------CATGTA-T-TCATTTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|20 : AAACTG-CATGCACATGTATCAAC---AGAGACAG-TT-C-TTAAAGATACTTAATTGGAAACAA--TTAC-TGTCGAATAGAA-TACTta
gi|21 : agatataaaatttacactcaGCTTTGATGACTTTCTACGTCACATACTAGTAGGTCATTCAGTTCTTTTATATGGTACT--CCAAAACGGAGTTTACATAAA
gi|22 : ctacgcgaaaCGGAAGCACCTATTACAATCGTTTGTGCGACCGTTTACGTCAC------AGAGGTCA-GGAACCCTTTGTCATGGTACT--CC-AAACGGAATTCA
gi|23 : g--CTCAAAACTTACCAAGATA--TAAAT-ATTTCA-TG-T-GCGTGCTATATGTGTATAA-------------ATGTATT-TCA-TTTTTTTTTT--------AC--TACAATTT-TATA
gi|24 : ---TTGAAACCCCTTTT--CCTTATGTCATGTTGTTGC-ATTGAGCGTCCTTATGATA-----CAGTATCTAt
gi|25 : GTATGACCT---ATGTTAC------AAAGCTTA-AGAGCCCTTTTTTGTGGTACT--CC-AAACGGAATTCACATAAAaaaatccttcaa
gi|27 : CGGAAGCGCCTATTGCAAT-------------TTCTACGTCAC------GGAGGCCA-GGATCC
gi|28 : gTTCTTTGTTTTCGTACGAG--------------CT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTtccaaacgtaact
gi|3 : GAAGCGCCTAT-GCAATTGCTTATGTGACCTTCTACGTCAC------G-AGGTCA-GGAACACTTTTTCATGGTACTATCC-AAATGGAATTCACATAAACAAAAGGGC-CGCTATTAGAAAACTCTGCTTAATTTTAATTC--GAGATAACCATCACAACAGAGTT------GTTAAAAACAGATTTTCAGA----CGAA---CACTTAT--ATTTTATTATCATTCATGAATCTAAAAA-TTG-ACCAAAGAAACA--A-TGGCTAAGCGGTTTCTAAC--GTGACGCACTCTAAATA-ATA-CAACGAATCAGACAGTGAATTACCTCTCTTTG--TAAAT---ATCAGAGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGA--TATATACATAATAAGTATTGATTAAAGTAAGTTAAAAAGATTTAA-TATTATTAAACAATTAAACAAACG----AAATGAA----ATA-TTCATGTTGTAAGCCGTCAGAAA-ATTGTTGAGTGCCTAAATTGATTATAATATTGAAATCC----TTT---TAACTGTTTATACAGGTTTGCAGAG-ACACAATAGTA------------TATATTA-----AGTGAGC--A--GACGCA-ATC------A--CATAGTACGGGGGGTA----AAACGCGGCAA-A----TGAAAGAGATGATTTTTATTTAATTTTTAATGAG--TTTTGGTATAT-------CATGAAAA--ATAGGACATTCGGGACTTCTTTATTTTTGTATGAGATAT-TCTATGGTCCTTATTGTATA---TTGAAACCCTTTTT--CCTTATGTCGTTTTATTGC-ATTGGGTGTCCTTATGATA-----CAGTATCTA--------------------A-G---TACC-CGCTCAAG---AAGGGAAG-A-ACACCGAAA-TATCATCTG----TTCCTTTATTTAATTGTATACACGATT-TT-TAATTCAAT-ATGTCT-T-TGGTGAACATAGAAATGT-A--C-----TG--AGCTG-AAT-----------AACCGAAGAAACA
gi|4 : TTCAAGTTAACGAGAGTCACCTGT--ATTTTATTATCATTCCTGAATCTAAAAAATTGGAGCAAAGAAACA--AACGGCTAAGCGGTCTCTAAA--GTAACGCGCTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATAAGTGTA--------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAAAACGG--TATGTAC---ATACGTATTGATTAAATAAAGTCAACAAGAATTTAATATTATTAAAC--TAAAACAAAAGAAAAAAATGAA----ATA-TGCATGTTGTAAGCGGTCAAAAA-GTTTGTGAGTGTCTAAATTGATTACAATATTGAAATAT----TCTA-ACAACTGTTTATACGGGTTTGCAGAG-ACACAGT--TA------------TATAT-------AGCGAGC--A--TACT--TTTC------AGCC---ATATGTTTAATA----GAATGCGGTAA-A------------------------CA--TTTT------------GGTATAT-------CATGAAAAATATA--------------TCTTTATTTTCGTATGAGCTAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACtt
gi|5 : cgagaacttcgagagatcgaag---ATCAGTGT---------AA--AT-CAGTAT--AA-A--TATCA---------------TAATCTACATACGTAAACACAG--CATATAC---A-------------GATAA--------------------TATTGAACAATTAAACAAACA----AAAT-AA----ATA-TACATGTTGTAATCCGTCAGAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATGC-----CTATTCAA-TGTTTATACCGGTTTGCAGAG-ACACAATACTA------------TATATAGTGTAGAGTGAGCAAA--GACTTAGGACTGAGGTG--T---GTA-GTAAAACATGACAAGTACGACAACATTCTTGA-AAAAATA-TTCAAAAATA--TTTTGAAAATGATTTTGGTATATTATATAGCATGAAAA--ATAGAATATTAAGTACTTCTTTACTTTTGTATGAGATAT-TCTATGGTCTT-----TGAAAGTTTGAAACCCTTTT
gi|6 : GGAAGT--CTATTGCAATTGCTTATATGACCTTCTATGTCAC------GGAGGTCA-GGGGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAAC-AAAGGGCATGT--------AATTC-GCT-AATCA-AACTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNN---NNCTAATCAAATTTGCGATAA-----AAATC--AAAA-TGG-GGTCACGACGCA--A-CGGATAAGAGGTCTC-------TAAC-------------A-G-TAACGAAACAAAC--------ACCTCCCTTAGACTATATTTAGTCAATGT---------AA--A-----TAC--AC-G--TATCT---------------TAATCAACACA
gi|7 : AT-TCGATAGTCCT-----GATA---TTGAAACCCTTTTTTTCCTTTTGTCGTTTTATTGG-ATTGCGTGTCCTTATG-TACAGTGCAGTAACTACATGTACATGCAAGTAGACTA-GAAGTACC-C-TT---G---AAGGGAAGAACAC--CGAGA-TATTATCTG----TTCCT--ATTT-ATTGTTTACACGATT-TC-TAATTC--T-A-GTCA-G-TGGTG---TTAGAAATGC-A--CTGCTTTGCAAACTG-CATGT-C-------AAC---AGAGACAGTTT-G-TTAAAGGTACTG----GAAAGCAA--TTAC-TGTCGAATAAAA-TACTATTGATAT---CTGGCATTTGTTAGG--CTCAAAAC
gi|8 : AA------TAAG---TACCAC-TT---AGCCAAGGGAAGAA-ACC-CGAGAATATTAACTAAGCATCCCTTTATAT-GTTATA-GCACGATT-CA-TAATTCC-T-A-G-CATG-TG-TG---TTAAACATGT-AATC-----TGCAAACTGGCATGT-CA------A-C---AGAGACAG-TT-G-TTAAAGGTACT------GAATCAAATTTGA-T-TCGAATAGAA-T--TAATGG--C---T--GC-----CCA-GACCTCCAAACTTACTAAGATA--ATAAT-TTTTCA-TG-TAGCAGGTTAT-CGTG-ATAAACTGTACTACATCATCTACTATCA-TTTTTTT
gi|9 : AAAGTG-CATGT-CA------A-C---AGAGTCAG-TT-G-TTAAAGGT-----------AAC---------TGTCGAATAGAA-TACTATTGAAAT---T--GCATTTGTTA-GA-CTCGAAACATACCAAGATA--TAGTT-ATTTTA-TG-T-GCATG-TAT------------------------TTTGTT-TCG--TTTTTTTTTTATTATTGGCATTA-AATTCGTATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTATTTACTTTTTTATTGGCATCTATTTTTTTTTAAATCAATTATTCGTGGGTTTTTT
Alignments
lowQualScore : 111111 44444444 1 11 1111 111 1 22 2222222222222222 222222222222222 66666666666666 1111 1111 111111 5555555555555 2222222 3333333333333 2222222 3333333333333333 11 111 2222222 11 11111 111 2222222222222 1111111 1111 22222222 111 22222 111111 11111 111111111 11 111 22 4444444444444 11 1
lowQualScore : 3 0 6 5 5 666666 3 5 99 6 7 7 88 88888888 0 8 8 11 2 2 4444 111 1 99 2 5 6 1 99 6 99 5 5 0 0 5 22 777 1 0000000000000000 55 4 55 555555555555555 1 3 666 777 55555555555555 22 4444 2 2222 5 2 3 5 0 1 444444 88 4 0 5 2222222222222 5 6666666 77 888 1 3 7777777777777 3 3333333 8 3333333333333333 44 22 11 0 3 111 6666666 11 3 66 66 5 22222 777 66 0 5 0 444 2 8 0000000000000 777 6666666 2 3 3 55 1 6 6 4444 3 6 1 5 5 44444444 5 777 3 000 5 77 22222 11 4 4 777777 9 777 5 5 5 99999 0 66 5555 0 5 999999999 8 0 5 11 000 6 6 6 6 1 33 3 7777777777777 1 6 6 11 0 33 2 0
lowQualScore : . . . . . ...... . . .. . . . .. ........ . . . .. . . .... ... . .. . . . . .. . .. . . . . . .. ... . ................ .. . .. ............... . . ... ... .............. .. .... . .... . . . . . . ...... .. . . . ............. . ....... .. ... . . ............. . ....... . ................ .. .. .. . . ... ....... .. . .. .. . ..... ... .. . . . ... . . ............. ... ....... . . . .. . . . .... . . . . . ........ . ... . ... . .. ..... .. . . ...... . ... . . . ..... . .. .... . . ......... . . . .. ... . . . . . .. . ............. . . . .. . .. . .
lowQualScore : 2 8 4 3 7 444444 0 7 22 7 3 3 00 33333333 0 0 0 00 8 8 2222 777 0 22 5 7 7 7 22 7 22 0 0 0 2 1 11 000 6 2222222222222222 55 0 55 000000000000000 1 9 222 888 00000000000000 22 2222 5 1111 7 7 0 7 6 3 111111 77 3 1 7 7777777777777 7 4444444 99 999 7 2 6666666666666 2 4444444 0 2222222222222222 22 00 00 8 2 666 0000000 22 3 77 66 0 55555 888 99 5 7 7 444 5 0 5555555555555 555 0000000 5 2 2 77 0 7 7 2222 2 7 7 7 7 66666666 7 333 0 000 7 99 11111 44 4 4 222222 0 888 0 0 0 99999 2 99 4444 2 0 000000000 7 1 7 99 222 7 7 7 7 0 55 2 2222222222222 7 7 7 88 2 88 5 0
consensus : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA------------TAT-ATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAATA----AAATGCGGCAA-A----TGACAAANAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
Reference ( family-1265 ) : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA------------TAT-ATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAATA----AAATGCGGCAA-A----TGACAAANAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|1 : CGGAAGCGCCTATTGCAATCGTTTGTG-TGACCTTCTACG--AC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACAATAACAAA-GGGCATGC--------AACTT-GCT-AATTA-AATTC--GGGATAACCATCAGA-CAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAA-CA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-AATTGTGAGCGTCTAATTTGATTACAATATTGAAATTG----TCTA-ACAACTGTTTATACGGGTTTGCAGAG-CACCAGT-------------TAT-ATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAAA-G----AAATGCGGCAA-A----TGACAAACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------TGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGA-AT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACA-CGATA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-A-TTCA-TG-T-GCATGCTATATGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|10 : TGGATATAC-ATTGTCGTAATTC--T-----A-GTTA-GGTGTTG---TTAGAAATGTAA--C-----T-CAAACTG-CATGT-CAC-----AGC---AGAGACAG-TT-GATTAAAGGTATT------GAAGCAA--TTGA-TGGTGAACAAAAGTACTATTGG---------GC-TTTGT---A--CTCAAAACTTA-CAAGATAAGTAGATAATTTCATTGTT-GCATGCTATA--TGTTTAAA------------ATGTATT-TCT-TTTTTTTTTTTTTT
gi|11 : ttaattgtacata-TTT-AGCAAAGAAACACAA-CGGCAAAGCGGTCTCTAGAACGTAACGCACTCGAAATA-A-AATAACGAATCAAACAGAGAATTACCTCTCTTTG--TAAAT---ATCAGTGTCAGTGACGCAAGGGA-CAATGC--AATATTTATCACCGGGGTGGGACCGGTNNNNNNNNNA-GTAAACCCGGTATATATAC---ATAAGTATTGATTAAATAAAGT--------------TA
gi|12 : AAACTG-CATGT-CA------A-C---AGA-ACAG-TTTG-TTAAAGGTACTT----GAAATCAA--T--ACTGT-GAATAGAA-TACTATTGAGATTGCT--GCTTTTGTTA-G--
gi|13 : ctggttcatgtgcaattgcaactagaatattctaatttttttctttaaaattgaagatatagaattttacacccaCAAACA----AAATTAGTTTTATGGTACATATTGAAAACAGTCAAGAATACTATTGGGCCTCCAAATTAATTATAATATGGAAATCACAATTCCA-GCAA------ATACGGGTATGCAGATGCA-----A------------TAT-ATAT-------AATAAGC--AGGCACATATTgctgaa
gi|14 : A----ATA-TACCTATTGTAAGCTCTCAAAAA-AAATTTGAACGCCTAAACTGGTTATAATATTGAAATTC----T-TA-TCAACTGTTTTGATGGGTTTGCAGAGACA-CAGTAGTATAATATACATATTATAT-------AGTGAGC--A--GACcatggt
gi|15 : GTGAATTACCTCCCTTTGACTATGT---A-----AT---------AA--AGTCAATGTTAAA-A--TATTA---------------TAATCAGCATACATGTACATG---TATGTGC---ACAAGTATTGATTCAATAGAGT--------------TA
gi|16 : T-AATTA-AATTC--GGGATAGCCATCAGAACAGGATAACGGCATTTAAAAACATATTTTCAAA----AGAA---CATGTAT--ATTTTATTACCATTCATGAATCTAAAAA-Tac
gi|17 : tAGAAAATTCAGGACTTCTTTATTTTTGTATAAGATACATATATAGTCAA-----TATA---TTGAAACCCTT--------------------TTGCAAATGGGTGTCCTTATGATA-----CAGTATCTATA
gi|18 : CTCTAAATAGA-A-TAAAGAAGAAAACGGTGAATCGCATCTCATTGACTATGT---AATAATGT----------------CAGTGT--AA-A--TAATA---------------TAATCAACAT-----------G--TATG--C---ATAAGTATTGAa
gi|19 : TCTAAATA-A-AATAACGAAATAAAC-----GTT---TCCCTTTGACTAATT---GT--ATTT---------AA--GT-CAGTGT--AA-A--TATCA---------------TATTCAACA---------------TGTGTGC---ATAAGTTTTGATTGAA
gi|2 : aTT-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTGTGAGCGTCTAAATTGATTACAATATTGAAATAG----TCTA-ACAACTGTTTATACGGGTTTGCAGAGACA-CAGT-------------TAT-ATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAA--A----GAATGCGGCAA-A----TGAC-AACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------AGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGAAAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AA-GGAAGAAACACCGATA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--TA----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-ATTTCA-TG-T-GCATGCTATA-GTGTATAAA-TGTA------CATGTA-T-TCATTTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|20 : AAACTG-CATGCACATGTATCAAC---AGAGACAG-TT-C-TTAAAGATACTTAATTGGAAACAA--TTAC-TGTCGAATAGAA-TACTta
gi|21 : agatataaaatttacactcaGCTT-TGATGACTTTCTACGTCACATACTAGTAGGTCATTCAGTTCTTTTATATGGTACT--CCAAAACGGAGTTTACATAAA
gi|22 : ctacgcgaaaCGGAAGCACCTATTACAATCGTTTGTG-CGACCGTTTACGTCAC------AGAGGTCAGG-AACCCTTTGTCATGGTACT--CC-AAACGGAATTCA
gi|23 : g--CTCAAAACTTACCAAGATA--TAAAT-ATTTCA-TG-T-GCGTGCTATATGTGTATAA-------------ATGTATT-TCA-TTTTTTTTTT--------AC--TACAATTT-TATA
gi|24 : ---TTGAAACCCCTTTT--CCTTATGTCATGTTGTTGC-ATTGAGCGTCCTTATGATA-----CAGTATCTAt
gi|25 : GTA-TGACCT---ATGTTAC------AAAGCTTAAG-AGCCCTTTTTTGTGGTACT--CC-AAACGGAATTCACATAAAaaaatccttcaa
gi|27 : CGGAAGCGCCTATTGCAAT--------------TTCTACGTCAC------GGAGGCCAGG-ATCC
gi|28 : gTTCTTTGTTTTCGTACGAG--------------CT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTtccaaacgtaact
gi|3 : GAAGCGCCTAT-GCAATTGCTTATG-TGACCTTCTACGTCAC------G-AGGTCAGG-AACACTTTTTCATGGTACTATCC-AAATGGAATTCACATAAACAAAAGGGC-CGCTATTAGAAAACTCTGCTTAATTTTAATTC--GAGATAACCATCACAACAGAGTT------GTTAAAAACAGATTTTCAGA----CGAA---CACTTAT--ATTTTATTATCATTCATGAATCTAAAAA-TTG-ACCAAAGAAACA--A-TGGCTAAGCGGTTTCTAAC--GTGACGCACTCTAAATA-ATA-CAACGAATCAGACAGTGAATTACCTCTCTTTG--TAAAT---ATCAGAGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGA--TATATACATAATAAGTATTGATTAAAGTAAGTTAAAAAGATTTAA-TATTATTAAACAATTAAACAAACG----AAATGAA----ATA-TTCATGTTGTAAGCCGTCAGAAA-ATTGTTGAGTGCCTAAATTGATTATAATATTGAAATCC----TTT---TAACTGTTTATACAGGTTTGCAGAGACA-CAATAG-----------TAT-ATATTA-----AGTGAGC--A--GACGCA-ATC------A--CATAGTACGGGGGGTA----AAACGCGGCAA-A----TGAAAGAGATGATTTTTATTTAATTTTTAATGAG--TTTTGGTATAT-------CATGAAAA--ATAGGACATTCGGGACTTCTTTATTTTTGTATGAGATAT-TCTATGGTCCTTATTGTATA---TTGAAACCCTTTTT--CCTTATGTCGTTTTATTGC-ATTGGGTGTCCTTATGATA-----CAGTATCTA---------------------A-G---TACC-CGCTCAAG---AAGGGAAG-AACACCGAAA-TATCAT-CTG----TTCCTTTATTTAATTGTATACACGATT-TT-TAATTCAAT-----ATGTCT-T-TGGTGAACATAGAAATGT-A--C-----TG--AGCTG-AAT-----------AACCGAAGAAACA
gi|4 : TTCAAGTTAACGAGAGTCACCTGT--ATTTTATTATCATTCCTGAATCTAAAAAATTGGAGCAAAGAAACA--AACGGCTAAGCGGTCTCTAAA--GTAACGCGCTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATAAGTGTA--------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAAAACGG--TATGTAC---ATACGTATTGATTAAATAAAGTCAACAAGAATTTAATATTATTAAAC--TAAAACAAAAGAAAAAAATGAA----ATA-TGCATGTTGTAAGCGGTCAAAAA-GTTTGTGAGTGTCTAAATTGATTACAATATTGAAATAT----TCTA-ACAACTGTTTATACGGGTTTGCAGAGACA-CAGT-------------TAT-ATAT-------AGCGAGC--A--TACT--TTTC------AGCC---ATATGTTTAATA----GAATGCGGTAA-A------------------------CA--TT------------TTGGTATAT-------CATGAAAAATATA--------------TCTTTATTTTCGTATGAGCTAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACtt
gi|5 : cgagaacttcgagagatcgaag---ATCAGTGT---------AA--AT-CAGTAT--AA-A--TATCA---------------TAATCTACATACGTAAACACAG--CATATAC---A-------------GATAA--------------------TATTGAACAATTAAACAAACA----AAAT-AA----ATA-TACATGTTGTAATCCGTCAGAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATGC-----CTATTCAA-TGTTTATACCGGTTTGCAGAGACA-CAATAC-----------TAT-ATATAGTGTAGAGTGAGCAAA--GACTTAGGACTGAGGTG--T---GTA-GTAAAACATGACAAGTACGACAACATTCTTGA-AAAAATA-TTCAAAAATA--TTTTGAAAATGATTTTGGTATATTATATAGCATGAAAA--ATAGAATATTAAGTACTTCTTTACTTTTGTATGAGATAT-TCTATGGTCTT-----TGAAAGTTTGAAACCCTTTT
gi|6 : GGAAGT--CTATTGCAATTGCTTATA-TGACCTTCTATGTCAC------GGAGGTCAGG-GGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAAC-AAAGGGCATGT--------AATTC-GCT-AATCA-AACTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNN---NNCTAATCAAATTTGCGATAA-----AAATC--AAAA-TGG-GGTCACGACGCA--A-CGGATAAGAGGTCTC-------TAAC-------------A-G-TAACGAAACAAAC--------ACCTCCCTTAGACTATATTTAGTCAATGT---------AA--A-----TAC--AC-G--TATCT---------------TAATCAACACA
gi|7 : AT-TCGATAGTCCT-----GATA---TTGAAACCCTTTTTTTCCTTTTGTCGTTTTATTGG-ATTGCGTGTCCTTATG-TACAGTGCAGTAACTACATGTACATG-CAAGTAGACTA-GAAGTACC-C-TT---G---AAGGGAAGAA-CACCGAGA-TATTAT-CTG----TTCCT--ATTT-ATTGTTTACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGC-A--CTGCTTTGCAAACTG-CATGT-C-------AAC---AGAGACAGTTT-G-TTAAAGGTACTG----GAAAGCAA--TTAC-TGTCGAATAAAA-TACTATTGATAT---CTGGCATTTGTTAGG--CTCAAAAC
gi|8 : AA------TAAG---TACCAC-TT---AGCCAAGGGAAGAAAC-CCGAGAATATTAA-CTAAGCATCCCTTTATAT-GTTATA-GCACGATT-CA-TAATTCC-T-----A-G-CATG-TG-TG---TTAAACATGT-AATC-----TGCAAACTGGCATGT-CA------A-C---AGAGACAG-TT-G-TTAAAGGTACT------GAATCAAATTTGA-T-TCGAATAGAA-T--TAATGG--C---T--GC-----CCA-GACCTCCAAACTTACTAAGATA--ATAAT-TTTTCA-TG-TAGCAGGTTAT-CGTG-ATAAACTGTACTACATCATCTACTATCA-TTTTTTT
gi|9 : ACA-TGTAG-ATCTACATGCA-ATGATAA------AA-A---TA------T---G---GACGGA--------CAAAA-TGTCATTCTG----TTTC---ATGT-AGAGT-TAC-TAGTT-TC-T---TC--TTAAAAA-ATTA-A-AGATA---T--AAAATTT-A--CAC---TCAAAAGTG-CATGT-CA------A-C---AGAGTCAG-TT-G-TTAAAGGT-----------AAC---------TGTCGAATAGAA-TACTATTGAAAT---T--GCATTTGTTA-GA-CTCGAAACATACCAAGATA--TAGTT-ATTTTA-TG-T-GCATG-TAT------------------------TTTGTT-TCG--TTTTTTTTTTATTATTGGCATTA-AATTCGTATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTATTTACTTTTTTATTGGCATCTATTTTTTTTTAAATCAATTATTCGTGGGTTTTTT
Alignments
lowQualScore : 111111 44444444 1 11 1111 111 1 22 2222222222222222 222222222222222 66666666666666 1111 1111 111111 5555555555555 2222222 3333333333333 2222222 3333333333333333 11 111 2222222 11 11111 111 2222222222222 1111111 1111 22222222 111 22222 111111 11111 111111111 11 111 22 4444444444444 11 1
lowQualScore : 3 0 6 5 5 666666 3 5 99 6 7 7 88 88888888 0 8 8 11 2 2 4444 111 1 99 2 5 6 1 99 6 99 5 5 0 0 5 22 777 1 0000000000000000 55 4 55 555555555555555 1 3 666 777 55555555555555 22 4444 2 2222 5 2 3 5 0 1 444444 88 4 0 5 2222222222222 5 6666666 77 888 1 3 7777777777777 3 3333333 8 3333333333333333 44 22 11 0 3 111 6666666 11 3 66 66 5 22222 777 66 0 5 0 444 2 8 0000000000000 777 6666666 2 3 3 55 1 6 6 4444 3 6 1 5 5 44444444 5 777 3 000 5 77 22222 11 4 4 777777 9 777 5 5 5 99999 0 66 5555 0 5 999999999 8 0 5 11 000 6 6 6 6 1 33 3 7777777777777 1 6 6 11 0 33 2 0
lowQualScore : . . . . . ...... . . .. . . . .. ........ . . . .. . . .... ... . .. . . . . .. . .. . . . . . .. ... . ................ .. . .. ............... . . ... ... .............. .. .... . .... . . . . . . ...... .. . . . ............. . ....... .. ... . . ............. . ....... . ................ .. .. .. . . ... ....... .. . .. .. . ..... ... .. . . . ... . . ............. ... ....... . . . .. . . . .... . . . . . ........ . ... . ... . .. ..... .. . . ...... . ... . . . ..... . .. .... . . ......... . . . .. ... . . . . . .. . ............. . . . .. . .. . .
lowQualScore : 2 8 4 3 7 444444 0 7 22 7 3 3 00 33333333 0 0 0 00 8 8 2222 777 0 22 5 7 7 7 22 7 22 0 0 0 2 1 11 000 6 2222222222222222 55 0 55 000000000000000 1 9 222 888 00000000000000 22 2222 5 1111 7 7 0 7 6 3 111111 77 3 1 7 7777777777777 7 4444444 99 999 7 2 6666666666666 2 4444444 0 2222222222222222 22 00 00 8 2 666 0000000 22 3 77 66 0 55555 888 99 5 7 7 444 5 0 5555555555555 555 0000000 5 2 2 77 0 7 7 2222 2 7 7 7 7 66666666 7 333 0 000 7 99 11111 44 4 4 222222 0 888 0 0 0 99999 2 99 4444 2 0 000000000 7 1 7 99 222 7 7 7 7 0 55 2 2222222222222 7 7 7 88 2 88 5 0
consensus : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA------------TAT-ATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAATA----AAATGCGGCAA-A----TGACAAANAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
Reference ( family-1265 ) : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA------------TAT-ATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAATA----AAATGCGGCAA-A----TGACAAANAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|1 : CGGAAGCGCCTATTGCAATCGTTTGTG-TGACCTTCTACG--AC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACAATAACAAA-GGGCATGC--------AACTT-GCT-AATTA-AATTC--GGGATAACCATCAGA-CAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAA-CA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-AATTGTGAGCGTCTAATTTGATTACAATATTGAAATTG----TCTA-ACAACTGTTTATACGGGTTTGCAGAG-CACCAGT-------------TAT-ATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAAA-G----AAATGCGGCAA-A----TGACAAACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------TGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGA-AT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACA-CGATA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-A-TTCA-TG-T-GCATGCTATATGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|10 : TGGATATAC-ATTGTCGTAATTC--T-----A-GTTA-GGTGTTG---TTAGAAATGTAA--C-----T-CAAACTG-CATGT-CAC-----AGC---AGAGACAG-TT-GATTAAAGGTATT------GAAGCAA--TTGA-TGGTGAACAAAAGTACTATTGG---------GC-TTTGT---A--CTCAAAACTTA-CAAGATAAGTAGATAATTTCATTGTT-GCATGCTATA--TGTTTAAA------------ATGTATT-TCT-TTTTTTTTTTTTTT
gi|11 : ttaattgtacata-TTT-AGCAAAGAAACACAA-CGGCAAAGCGGTCTCTAGAACGTAACGCACTCGAAATA-A-AATAACGAATCAAACAGAGAATTACCTCTCTTTG--TAAAT---ATCAGTGTCAGTGACGCAAGGGA-CAATGC--AATATTTATCACCGGGGTGGGACCGGTNNNNNNNNNA-GTAAACCCGGTATATATAC---ATAAGTATTGATTAAATAAAGT--------------TA
gi|12 : AAACTG-CATGT-CA------A-C---AGA-ACAG-TTTG-TTAAAGGTACTT----GAAATCAA--T--ACTGT-GAATAGAA-TACTATTGAGATTGCT--GCTTTTGTTA-G--
gi|13 : ctggttcatgtgcaattgcaactagaatattctaatttttttctttaaaattgaagatatagaattttacacccaCAAACA----AAATTAGTTTTATGGTACATATTGAAAACAGTCAAGAATACTATTGGGCCTCCAAATTAATTATAATATGGAAATCACAATTCCA-GCAA------ATACGGGTATGCAGATGCA-----A------------TAT-ATAT-------AATAAGC--AGGCACATATTgctgaa
gi|14 : A----ATA-TACCTATTGTAAGCTCTCAAAAA-AAATTTGAACGCCTAAACTGGTTATAATATTGAAATTC----T-TA-TCAACTGTTTTGATGGGTTTGCAGAGACA-CAGTAGTATAATATACATATTATAT-------AGTGAGC--A--GACcatggt
gi|15 : GTGAATTACCTCCCTTTGACTATGT---A-----AT---------AA--AGTCAATGTTAAA-A--TATTA---------------TAATCAGCATACATGTACATG---TATGTGC---ACAAGTATTGATTCAATAGAGT--------------TA
gi|16 : T-AATTA-AATTC--GGGATAGCCATCAGAACAGGATAACGGCATTTAAAAACATATTTTCAAA----AGAA---CATGTAT--ATTTTATTACCATTCATGAATCTAAAAA-Tac
gi|17 : tAGAAAATTCAGGACTTCTTTATTTTTGTATAAGATACATATATAGTCAA-----TATA---TTGAAACCCTT--------------------TTGCAAATGGGTGTCCTTATGATA-----CAGTATCTATA
gi|18 : CTCTAAATAGA-A-TAAAGAAGAAAACGGTGAATCGCATCTCATTGACTATGT---AATAATGT----------------CAGTGT--AA-A--TAATA---------------TAATCAACAT-----------G--TATG--C---ATAAGTATTGAa
gi|19 : TCTAAATA-A-AATAACGAAATAAAC-----GTT---TCCCTTTGACTAATT---GT--ATTT---------AA--GT-CAGTGT--AA-A--TATCA---------------TATTCAACA---------------TGTGTGC---ATAAGTTTTGATTGAA
gi|2 : aTT-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTGTGAGCGTCTAAATTGATTACAATATTGAAATAG----TCTA-ACAACTGTTTATACGGGTTTGCAGAGACA-CAGT-------------TAT-ATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAA--A----GAATGCGGCAA-A----TGAC-AACAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------AGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGAAAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AA-GGAAGAAACACCGATA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--TA----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT----GGAAGCAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-ATTTCA-TG-T-GCATGCTATA-GTGTATAAA-TGTA------CATGTA-T-TCATTTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|20 : AAACTG-CATGCACATGTATCAAC---AGAGACAG-TT-C-TTAAAGATACTTAATTGGAAACAA--TTAC-TGTCGAATAGAA-TACTta
gi|21 : agatataaaatttacactcaGCTT-TGATGACTTTCTACGTCACATACTAGTAGGTCATTCAGTTCTTTTATATGGTACT--CCAAAACGGAGTTTACATAAA
gi|22 : ctacgcgaaaCGGAAGCACCTATTACAATCGTTTGTG-CGACCGTTTACGTCAC------AGAGGTCAGG-AACCCTTTGTCATGGTACT--CC-AAACGGAATTCA
gi|23 : g--CTCAAAACTTACCAAGATA--TAAAT-ATTTCA-TG-T-GCGTGCTATATGTGTATAA-------------ATGTATT-TCA-TTTTTTTTTT--------AC--TACAATTT-TATA
gi|24 : ---TTGAAACCCCTTTT--CCTTATGTCATGTTGTTGC-ATTGAGCGTCCTTATGATA-----CAGTATCTAt
gi|25 : GTA-TGACCT---ATGTTAC------AAAGCTTAAG-AGCCCTTTTTTGTGGTACT--CC-AAACGGAATTCACATAAAaaaatccttcaa
gi|27 : CGGAAGCGCCTATTGCAAT--------------TTCTACGTCAC------GGAGGCCAGG-ATCC
gi|28 : gTTCTTTGTTTTCGTACGAG--------------CT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTtccaaacgtaact
gi|3 : GAAGCGCCTAT-GCAATTGCTTATG-TGACCTTCTACGTCAC------G-AGGTCAGG-AACACTTTTTCATGGTACTATCC-AAATGGAATTCACATAAACAAAAGGGC-CGCTATTAGAAAACTCTGCTTAATTTTAATTC--GAGATAACCATCACAACAGAGTT------GTTAAAAACAGATTTTCAGA----CGAA---CACTTAT--ATTTTATTATCATTCATGAATCTAAAAA-TTG-ACCAAAGAAACA--A-TGGCTAAGCGGTTTCTAAC--GTGACGCACTCTAAATA-ATA-CAACGAATCAGACAGTGAATTACCTCTCTTTG--TAAAT---ATCAGAGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGA--TATATACATAATAAGTATTGATTAAAGTAAGTTAAAAAGATTTAA-TATTATTAAACAATTAAACAAACG----AAATGAA----ATA-TTCATGTTGTAAGCCGTCAGAAA-ATTGTTGAGTGCCTAAATTGATTATAATATTGAAATCC----TTT---TAACTGTTTATACAGGTTTGCAGAGACA-CAATAG-----------TAT-ATATTA-----AGTGAGC--A--GACGCA-ATC------A--CATAGTACGGGGGGTA----AAACGCGGCAA-A----TGAAAGAGATGATTTTTATTTAATTTTTAATGAG--TTTTGGTATAT-------CATGAAAA--ATAGGACATTCGGGACTTCTTTATTTTTGTATGAGATAT-TCTATGGTCCTTATTGTATA---TTGAAACCCTTTTT--CCTTATGTCGTTTTATTGC-ATTGGGTGTCCTTATGATA-----CAGTATCTA---------------------A-G---TACC-CGCTCAAG---AAGGGAAG-AACACCGAAA-TATCAT-CTG----TTCCTTTATTTAATTGTATACACGATT-TT-TAATTCAAT-----ATGTCT-T-TGGTGAACATAGAAATGT-A--C-----TG--AGCTG-AAT-----------AACCGAAGAAACA
gi|4 : TTCAAGTTAACGAGAGTCACCTGT--ATTTTATTATCATTCCTGAATCTAAAAAATTGGAGCAAAGAAACA--AACGGCTAAGCGGTCTCTAAA--GTAACGCGCTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATAAGTGTA--------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAAAACGG--TATGTAC---ATACGTATTGATTAAATAAAGTCAACAAGAATTTAATATTATTAAAC--TAAAACAAAAGAAAAAAATGAA----ATA-TGCATGTTGTAAGCGGTCAAAAA-GTTTGTGAGTGTCTAAATTGATTACAATATTGAAATAT----TCTA-ACAACTGTTTATACGGGTTTGCAGAGACA-CAGT-------------TAT-ATAT-------AGCGAGC--A--TACT--TTTC------AGCC---ATATGTTTAATA----GAATGCGGTAA-A------------------------CA--TT------------TTGGTATAT-------CATGAAAAATATA--------------TCTTTATTTTCGTATGAGCTAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACtt
gi|5 : cgagaacttcgagagatcgaag---ATCAGTGT---------AA--AT-CAGTAT--AA-A--TATCA---------------TAATCTACATACGTAAACACAG--CATATAC---A-------------GATAA--------------------TATTGAACAATTAAACAAACA----AAAT-AA----ATA-TACATGTTGTAATCCGTCAGAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATGC-----CTATTCAA-TGTTTATACCGGTTTGCAGAGACA-CAATAC-----------TAT-ATATAGTGTAGAGTGAGCAAA--GACTTAGGACTGAGGTG--T---GTA-GTAAAACATGACAAGTACGACAACATTCTTGA-AAAAATA-TTCAAAAATA--TTTTGAAAATGATTTTGGTATATTATATAGCATGAAAA--ATAGAATATTAAGTACTTCTTTACTTTTGTATGAGATAT-TCTATGGTCTT-----TGAAAGTTTGAAACCCTTTT
gi|6 : GGAAGT--CTATTGCAATTGCTTATA-TGACCTTCTATGTCAC------GGAGGTCAGG-GGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAAC-AAAGGGCATGT--------AATTC-GCT-AATCA-AACTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNN---NNCTAATCAAATTTGCGATAA-----AAATC--AAAA-TGG-GGTCACGACGCA--A-CGGATAAGAGGTCTC-------TAAC-------------A-G-TAACGAAACAAAC--------ACCTCCCTTAGACTATATTTAGTCAATGT---------AA--A-----TAC--AC-G--TATCT---------------TAATCAACACA
gi|7 : AT-TCGATAGTCCT-----GATA---TTGAAACCCTTTTTTTCCTTTTGTCGTTTTATTGG-ATTGCGTGTCCTTATG-TACAGTGCAGTAACTACATGTACATG-CAAGTAGACTA-GAAGTACC-C-TT---G---AAGGGAAGAA-CACCGAGA-TATTAT-CTG----TTCCT--ATTT-ATTGTTTACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGC-A--CTGCTTTGCAAACTG-CATGT-C-------AAC---AGAGACAGTTT-G-TTAAAGGTACTG----GAAAGCAA--TTAC-TGTCGAATAAAA-TACTATTGATAT---CTGGCATTTGTTAGG--CTCAAAAC
gi|8 : AA------TAAG---TACCAC-TT---AGCCAAGGGAAGAAAC-CCGAGAATATTAA-CTAAGCATCCCTTTATAT-GTTATA-GCACGATT-CA-TAATTCC-T-----A-G-CATG-TG-TG---TTAAACATGT-AATC-----TGCAAACTGGCATGT-CA------A-C---AGAGACAG-TT-G-TTAAAGGTACT------GAATCAAATTTGA-T-TCGAATAGAA-T--TAATGG--C---T--GC-----CCA-GACCTCCAAACTTACTAAGATA--ATAAT-TTTTCA-TG-TAGCAGGTTAT-CGTG-ATAAACTGTACTACATCATCTACTATCA-TTTTTTT
gi|9 : ACA-TGTAG-ATCTACATGCA-ATGATAA------AA-A---TA------T---G---GACGGA--------CAAAA-TGTCATTCTG----TTTC---ATGT-AGAGT-TAC-TAGTT-TC-T---TC--TTAAAAA-ATTA-A-AGATA---T--AAAATTT-A--CAC---TCAAAAGTG-CATGT-CA------A-C---AGAGTCAG-TT-G-TTAAAGGT-----------AAC---------TGTCGAATAGAA-TACTATTGAAAT---T--GCATTTGTTA-GA-CTCGAAACATACCAAGATA--TAGTT-ATTTTA-TG-T-GCATG-TAT------------------------TTTGTT-TCG--TTTTTTTTTTATTATTGGCATTA-AATTCGTATA
blockSeqs : A C G A ATACTA T C AT A A A AT TATTAGAA T T T TA A A TTAA AGT T CA A A G A CA A AC G T A A AC TTA C CAGTGACGCAAGGGA TA T TT CCGGGGTGGGACCGG C C GTA ATA CAACAAGAATTTAA AG AAAA T TTTT G A A T T CACAAT TT C . AGTATAATATACA T AGTGTAG AA GGC T T TGAGGTGT C ACATGAC C TTCTTGAAAAAATA CA TT AT G TGA TATATAG AT A TT AT A TATTG AGT TT A CAG C A GTAGACTAGAAG CG CAAG G A A AC T A T AGCA T A A G G TTAAAA T GG T AAC A AT TGCTT GC G A TGTATC G CGA T T A TAATT AT TGA G GATTGCT T G AC AGT A T T A C AT T ACTGTACTACATC T A T TT AT C G
blockSeqs : G T G . . G . . . . A C . . . . . A A . . A . C . . A . . . . . A G AC . T AAAGT . . . . C A G . TAAAAAGATTTAA AA . G . . C T . T TC G C . AG . TA . G T T ACATA C GTA . TGAAAGAGATGA TT TT . T T . AT A AG AA . . . . . CAG C . TAAG AC AGCC G A A AC A . . . T . A . . AAT . TG G . . . AC GC . . C A . . . . T . TGA . TATCTG A . A G . . . . C A T ATGTAC T . . TA . C .
blockSeqs : G T A . . A . . . . . . . A N . . T . A . . A . . . . . . A AC . C AAAAA . . . . C C G . . AA . G . . G G . G AG T C . AC . . . T C T AGCC T ATA . TGACAACAT AA AA . A G . . C TT AT . . . . . CAG C . TAG C G G A A AC G . . . T . A . . TA . G G . . . . GC . . . A . . . . T . TAC . GATT A . . T . . . . C A T A C . . TA . . .
blockSeqs : . . A . . G . . . . . . N . . . T . C . . A . . . . . . A AC . C AAGT . . . . C C A . . . . G . . A C . T CC A C . A . . . G T G GC . A . . . . . . . . . T TT CT . . . . . CA . . AAA C G C . . C G . . . . . T . . CT . T G . . . . CA . . . A . . . . G . TAC . AATT A . . A . . . . T C . . T . . .
blockSeqs : . . . G . . . . . A . . . . G . . . . . . A . . A AAAA . . . . C A G . . . . . . A G . G AT A . . . . . . T . . . . AT . . . . . . . AG . G . . . . A . . . . . A . . T . G A . . . . C . . . A . . . . . . TGA . CT . . . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C AAAA . . . . . A G . . . . A C . T GC . . . . . . . G . . . . . . . . . . T . A . . . . . G . . . . . . . . . . AC . . . . .
blockSeqs : . . . . . . C AAAT . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . AAA . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : GCA**** TGAAAAT********* AT C** AC ***** A* A************
originalCons : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA------------TAT-ATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAATA----AAATGCGGCAA-A----TGACAAANAT--TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACTT----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATACGTGTATAAA-TGTA------CATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
finalCons : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA------------TAT-ATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAGCA----AAATGCGGCAA-ATGAAAAT---------TTCCAATTCA--TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACCC--TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTACT-----GGAAGCAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATA-GTGTATAAA------------ATGTATT-TCA-TTTTTTTTTTTATTGTTGAC--TACAATTT-TATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTATTTACTTTTTTATTGGCATCTATTTTTTTTTAAATCAATTATTCGTGGGTTTTTT
Alignments
lowQualScore : 111111 44444444 1 11 1111 111 1 22 2222222222222222 222222222222222 66666666666666 1111 1111 111111 4444444444444444 2222222 3333333333333 3333333 666666666666666666 111111 111 2222222 11 11111 111 2222222222222 1111111 1111 22222222 111 22222 11111111 2222222222 111111111 11 111 111 33333 111 2222222 11 1
lowQualScore : 3 0 6 5 5 666666 3 5 99 6 7 7 88 88888888 0 8 8 11 2 2 4444 111 1 99 2 5 6 1 99 6 99 5 5 0 0 5 22 777 1 0000000000000000 55 4 55 555555555555555 1 3 666 777 55555555555555 22 4444 2 2222 5 2 3 5 0 1 444444 88 4 0 5 0000000000000000 6666666 77 888 1 3 7777777777777 3 2222222 8 777777777777777777 8 555555 3 111 6666666 11 3 66 66 5 22222 777 66 0 5 0 444 2 8 0000000000000 777 6666666 2 3 3 55 1 6 6 4444 3 6 1 5 5 44444444 5 777 3 000 5 77 22222 11 4 4 77777777 777 5 5 5 3333333333 5 66 5555 0 5 999999999 8 0 5 11 000 6 6 6 6 1 999 3 3 33333 1 111 6 1111111 11 0 33 2 0
lowQualScore : . . . . . ...... . . .. . . . .. ........ . . . .. . . .... ... . .. . . . . .. . .. . . . . . .. ... . ................ .. . .. ............... . . ... ... .............. .. .... . .... . . . . . . ...... .. . . . ................ ....... .. ... . . ............. . ....... . .................. . ...... . ... ....... .. . .. .. . ..... ... .. . . . ... . . ............. ... ....... . . . .. . . . .... . . . . . ........ . ... . ... . .. ..... .. . . ........ ... . . . .......... . .. .... . . ......... . . . .. ... . . . . . ... . . ..... . ... . ....... .. . .. . .
lowQualScore : 2 8 4 3 7 444444 0 7 22 7 3 3 00 33333333 0 0 0 00 8 8 2222 777 0 22 5 7 7 7 22 7 22 0 0 0 2 1 11 000 6 2222222222222222 55 0 55 000000000000000 1 9 222 888 00000000000000 22 2222 5 1111 7 7 0 7 6 3 111111 77 3 1 7 4444444444444444 4444444 99 999 7 2 6666666666666 2 0000000 0 444444444444444444 0 000000 2 666 0000000 22 3 77 66 0 55555 888 99 5 7 7 444 5 0 5555555555555 555 0000000 5 2 2 77 0 7 7 2222 2 7 7 7 7 66666666 7 333 0 000 7 99 11111 44 4 4 22222222 888 0 0 0 4444444444 0 99 4444 2 0 000000000 7 1 7 99 222 7 7 7 7 0 000 2 2 33333 7 777 7 7777777 88 2 88 5 0
consensus : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA-TA------------TATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAATA----AAATGCGGCAA-AT------GACAA------AT-TTCCAATTCA-TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTAC-T-----GG-AAG-CAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATA-GTGTATAAA-----ATGTATT---TCA-TTT-------TTTTTTTTATTGTTGAC--TACAATTT-TATA
Reference ( family-1265 ) : CGGAAGCGCCTATTGCAATCGCTTGTG-TGACCTTCTACGTCAC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAACAAAAGGGCACGC--------AACTC-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTNAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTGACTAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAC---ATAAGTATTGATTAAATAAAGT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATNN----TCTA-NCAACTGTTTATACGGGTTTGCAGAGACA-CAGTA-TA------------TATAT-------AGTGAGC--A--NACTTATTTC------G--C---GTACGGAAAGCA----AAATGCGGCAA-AT------GA-AA------AT-TTCCAATTCA-TTTTAAGGAT--TTTTGGTATAT-------CGTGAAAAATATAGAAAATTCAGGACTTCTTTATTTTCGTATGAGATAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACACCGANA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTAAAGGTAC-T-----GG-AAG-CAA--TTGA-TGTCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--NAAAT-ATTTCA-TG-T-GCATGCTATA-GTGTATAAA-----ATGTATT---TCA-TTT-------TTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|1 : CGGAAGCGCCTATTGCAATCGTTTGTG-TGACCTTCTACG--AC------GGAGGTCAGG-AGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACAATAACAAA-GGGCATGC--------AACTT-GCT-AATTA-AATTC--GGGATAACCATCAGA-CAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAA-CA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-AATTGTGAGCGTCTAATTTGATTACAATATTGAAATTG----TCTA-ACAACTGTTTATACGGGTTTGCAGAG-CACCAGT--TA------------TATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAAA-G----AAATGCGGCAA-AT------GACAAAC----AT-TTCCAATTCA-TTTTAAGGAT--TTTTGGTATAT-------TGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGA-AT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AAGGGAAGAAACA-CGATA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT-----GG-AAG-CAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-A-TTCA-TG-T-GCATGCTATATGTGTATAAATGTACATGTATT---TCA-TTT-------TTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|10 : TGGATATAC-ATTGTCGTAATTC--T-----A-GTTA-GGTGTTG---TTAGAAATGTAA--C-----T-CAAACTG-CATGT-CAC-----AGC---AGAGACAG-TT-GATTAAAGGTAT-T------G-AAG-CAA--TTGA-TGGTGAACAAAAGTACTATTGG---------GC-TTTGT---A--CTCAAAACTTA-CAAGATAAGTAGATAATTTCATTGTT-GCATGCTATA--TGTTTAAA-----ATGTATT---TCT-TTT-------TTTTTTTTTTT
gi|11 : ttaattgtacata-TTT-AGCAAAGAAACACAA-CGGCAAAGCGGTCTCTAGAACGTAACGCACTCGAAATA-A-AATAACGAATCAAACAGAGAATTACCTCTCTTTG--TAAAT---ATCAGTGTCAGTGACGCAAGGGA-CAATGC--AATATTTATCACCGGGGTGGGACCGGTNNNNNNNNNA-GTAAACCCGGTATATATAC---ATAAGTATTGATTAAATAAAGT--------------TA
gi|12 : AAACTG-CATGT-CA------A-C---AGA-ACAG-TTTG-TTAAAGGTAC-T-----TG-AAATCAA--T--ACTGT-GAATAGAA-TACTATTGAGATTGCT--GCTTTTGTTA-G--
gi|13 : ctggttcatgtgcaattgcaactagaatattctaatttttttctttaaaattgaagatatagaattttacacccaCAAACA----AAATTAGTTTTATGGTACATATTGAAAACAGTCAAGAATACTATTGGGCCTCCAAATTAATTATAATATGGAAATCACAATTCCA-GCAA------ATACGGGTATGCAGATGCA-----A-TA------------TATAT-------AATAAGC--AGGCACATATTgctgaa
gi|14 : A----ATA-TACCTATTGTAAGCTCTCAAAAA-AAATTTGAACGCCTAAACTGGTTATAATATTGAAATTC----T-TA-TCAACTGTTTTGATGGGTTTGCAGAGACA-CAGTAGTATAATATACATATTATAT-------AGTGAGC--A--GACcatggt
gi|15 : GTGAATTACCTCCCTTTGACTATGT---A-----AT---------AA--AGTCAATGTTAAA-A--TATTA---------------TAATCAGCATACATGTACATG---TATGTGC---ACAAGTATTGATTCAATAGAGT--------------TA
gi|16 : T-AATTA-AATTC--GGGATAGCCATCAGAACAGGATAACGGCATTTAAAAACATATTTTCAAA----AGAA---CATGTAT--ATTTTATTACCATTCATGAATCTAAAAA-Tac
gi|17 : tAGAAAATTCAGGACTTCTTTATTTTTGTATAAGATACATATATAGTCAA-----TATA---TTGAAACCCTT--------------------TTGCAAATGGGTGTCCTTATGATA-----CAGTATCTATA
gi|18 : CTCTAAATAGA-A-TAAAGAAGAAAACGGTGAATCGCATCTCATTGACTATGT---AATAATGT----------------CAGTGT--AA-A--TAATA---------------TAATCAACAT-----------G--TATG--C---ATAAGTATTGAa
gi|19 : TCTAAATA-A-AATAACGAAATAAAC-----GTT---TCCCTTTGACTAATT---GT--ATTT---------AA--GT-CAGTGT--AA-A--TATCA---------------TATTCAACA---------------TGTGTGC---ATAAGTTTTGATTGAA
gi|2 : aTT-GCT-AATTA-AATTC--GGGATAACCATCAGAACAGGGTAACGGCAGTTAAAAACAGATTTTCAAG----CGAA---CACTAAT--ATTTTATTATCATTCCTGAATCTAAAAA-TTG-AGCAAAGAAACA--A-CGGCTAAGCGGTCTCTAAA--GTAACGCACTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATCAGTGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGG--TATGTAT---ATCAGTATTGATTAAGTAAAAT--------------TATTATTAAACAGTTAAACAAACG----AAATGAA----ATA-TACGTGTTGTAAGCGGTCAAAAA-ATTTGTGAGCGTCTAAATTGATTACAATATTGAAATAG----TCTA-ACAACTGTTTATACGGGTTTGCAGAGACA-CAGT--TA------------TATAT-------AGTGACC--A--TACTTATTTT------G--C---ATACGGAAA--A----GAATGCGGCAA-AT------GACAAC-----AT-TTCCAATTCA-TTTTAAGGAT--TTTTGGTATAT-------AGTGAAAAATATAGAAAAAGCAGGACTTCTTTATTTTCGTATGAGAAAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACATG-TAA------TA-G---TACC-C-TT---G---AA-GGAAGAAACACCGATA-TATTAT-CTG----TTCCTTTATTT-ATTGTATACACGATT-TC-TAATTC--TA----A-GTCA-G-TGGTG---TTAGAAATGT-A--C-----TGCAAACTG-CATGT-CA------AAC---AGAGACAG-TT-G-TTATAGGTACTT-----GG-AAG-CAA--TTGA-TATCGAATAGAA-TACTATTGAGAT---T--GCATTTGTTA-G--CTCAAAACTTACCAAGATA--GAAAT-ATTTCA-TG-T-GCATGCTATA-GTGTATAAATGTACATGTA-T---TCATTTT-------TTTTTTTTATTGTTGAC--TACAATTT-TATA
gi|20 : AAACTG-CATGCACATGTATCAAC---AGAGACAG-TT-C-TTAAAGATAC-TTAATTGG-AAA-CAA--TTAC-TGTCGAATAGAA-TACTta
gi|21 : agatataaaatttacactcaGCTT-TGATGACTTTCTACGTCACATACTAGTAGGTCATTCAGTTCTTTTATATGGTACT--CCAAAACGGAGTTTACATAAA
gi|22 : ctacgcgaaaCGGAAGCACCTATTACAATCGTTTGTG-CGACCGTTTACGTCAC------AGAGGTCAGG-AACCCTTTGTCATGGTACT--CC-AAACGGAATTCA
gi|23 : g--CTCAAAACTTACCAAGATA--TAAAT-ATTTCA-TG-T-GCGTGCTATATGTGTAT-AA-----ATGTATT---TCA-TTT-------TTTTTTT--------AC--TACAATTT-TATA
gi|24 : ---TTGAAACCCCTTTT--CCTTATGTCATGTTGTTGC-ATTGAGCGTCCTTATGATA-----CAGTATCTAt
gi|25 : GTA-TGACCT---ATGTTAC------AAAGCTTAAG-AGCCCTTTTTTGTGGTACT--CC-AAACGGAATTCACATAAAaaaatccttcaa
gi|27 : CGGAAGCGCCTATTGCAAT--------------TTCTACGTCAC------GGAGGCCAGG-ATCC
gi|28 : gTTCTTTGTTTTCGTACGAG--------------CT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTtccaaacgtaact
gi|3 : GAAGCGCCTAT-GCAATTGCTTATG-TGACCTTCTACGTCAC------G-AGGTCAGG-AACACTTTTTCATGGTACTATCC-AAATGGAATTCACATAAACAAAAGGGC-CGCTATTAGAAAACTCTGCTTAATTTTAATTC--GAGATAACCATCACAACAGAGTT------GTTAAAAACAGATTTTCAGA----CGAA---CACTTAT--ATTTTATTATCATTCATGAATCTAAAAA-TTG-ACCAAAGAAACA--A-TGGCTAAGCGGTTTCTAAC--GTGACGCACTCTAAATA-ATA-CAACGAATCAGACAGTGAATTACCTCTCTTTG--TAAAT---ATCAGAGT---------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAACCCGA--TATATACATAATAAGTATTGATTAAAGTAAGTTAAAAAGATTTAA-TATTATTAAACAATTAAACAAACG----AAATGAA----ATA-TTCATGTTGTAAGCCGTCAGAAA-ATTGTTGAGTGCCTAAATTGATTATAATATTGAAATCC----TTT---TAACTGTTTATACAGGTTTGCAGAGACA-CAATAGTA------------TATATTA-----AGTGAGC--A--GACGCA-ATC------A--CATAGTACGGGGGGTA----AAACGCGGCAA-AT------GA-AAGAGATGAT-TTTTATTTAATTTTTAATGAG--TTTTGGTATAT-------CATGAAAA--ATAGGACATTCGGGACTTCTTTATTTTTGTATGAGATAT-TCTATGGTCCTTATTGTATA---TTGAAACCCTTTTT--CCTTATGTCGTTTTATTGC-ATTGGGTGTCCTTATGATA-----CAGTATCTA---------------------A-G---TACC-CGCTCAAG---AAGGGAAG-AACACCGAAA-TATCAT-CTG----TTCCTTTATTTAATTGTATACACGATT-TT-TAATTCAAT-----ATGTCT-T-TGGTGAACATAGAAATGT-A--C-----TG--AGCTG-AAT-----------AACCGAAGAAACA
gi|4 : TTCAAGTTAACGAGAGTCACCTGT--ATTTTATTATCATTCCTGAATCTAAAAAATTGGAGCAAAGAAACA--AACGGCTAAGCGGTCTCTAAA--GTAACGCGCTCTAAATA-A-A-TAACGAAGCAAACAGTGAGTTACCTCTCTTTG--TAAAT---ATAAGTGTA--------AA--AA-CAGTGT--AA-A--TATCA---------------TAATCAACATACGTAAAAACGG--TATGTAC---ATACGTATTGATTAAATAAAGTCAACAAGAATTTAATATTATTAAAC--TAAAACAAAAGAAAAAAATGAA----ATA-TGCATGTTGTAAGCGGTCAAAAA-GTTTGTGAGTGTCTAAATTGATTACAATATTGAAATAT----TCTA-ACAACTGTTTATACGGGTTTGCAGAGACA-CAGT--TA------------TATAT-------AGCGAGC--A--TACT--TTTC------AGCC---ATATGTTTAATA----GAATGCGGTAA-A------------------------CA------------------TTTTGGTATAT-------CATGAAAAATATA--------------TCTTTATTTTCGTATGAGCTAT-TCTATAGTCCT-----TATA---TTGAAACCCTTTTT--CCTTTTGTCGTTTTATTGC-ATTGCGTGTCCTTATGATACAGTGCAGTATCTACATGTACtt
gi|5 : cgagaacttcgagagatcgaag---ATCAGTGT---------AA--AT-CAGTAT--AA-A--TATCA---------------TAATCTACATACGTAAACACAG--CATATAC---A-------------GATAA--------------------TATTGAACAATTAAACAAACA----AAAT-AA----ATA-TACATGTTGTAATCCGTCAGAAA-ATTTTTGAGCGCCTAAATTGATTACAATATTGAAATGC-----CTATTCAA-TGTTTATACCGGTTTGCAGAGACA-CAATACTA------------TATATAGTGTAGAGTGAGCAAA--GACTTAGGACTGAGGTG--T---GTA-GTAAAACATGACAAGTACGACAACATTCTTGAAA-AA------ATATTCAAAAATA-TTTTGAAAATGATTTTGGTATATTATATAGCATGAAAA--ATAGAATATTAAGTACTTCTTTACTTTTGTATGAGATAT-TCTATGGTCTT-----TGAAAGTTTGAAACCCTTTT
gi|6 : GGAAGT--CTATTGCAATTGCTTATA-TGACCTTCTATGTCAC------GGAGGTCAGG-GGCCCTTTTTCATGGTACT--CC-AAACGGAATTCACATAAAC-AAAGGGCATGT--------AATTC-GCT-AATCA-AACTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNN---NNCTAATCAAATTTGCGATAA-----AAATC--AAAA-TGG-GGTCACGACGCA--A-CGGATAAGAGGTCTC-------TAAC-------------A-G-TAACGAAACAAAC--------ACCTCCCTTAGACTATATTTAGTCAATGT---------AA--A-----TAC--AC-G--TATCT---------------TAATCAACACA
gi|7 : AT-TCGATAGTCCT-----GATA---TTGAAACCCTTTTTTTCCTTTTGTCGTTTTATTGG-ATTGCGTGTCCTTATG-TACAGTGCAGTAACTACATGTACATG-CAAGTAGACTA-GAAGTACC-C-TT---G---AAGGGAAGAA-CACCGAGA-TATTAT-CTG----TTCCT--ATTT-ATTGTTTACACGATT-TC-TAATTC--T-----A-GTCA-G-TGGTG---TTAGAAATGC-A--CTGCTTTGCAAACTG-CATGT-C-------AAC---AGAGACAGTTT-G-TTAAAGGTAC-T-----GGAAAG-CAA--TTAC-TGTCGAATAAAA-TACTATTGATAT---CTGGCATTTGTTAGG--CTCAAAAC
gi|8 : AA------TAAG---TACCAC-TT---AGCCAAGGGAAGAAAC-CCGAGAATATTAA-CTAAGCATCCCTTTATAT-GTTATA-GCACGATT-CA-TAATTCC-T-----A-G-CATG-TG-TG---TTAAACATGT-AATC-----TGCAAACTGGCATGT-CA------A-C---AGAGACAG-TT-G-TTAAAGGTAC-T-----G--AAT-CAAATTTGA-T-TCGAATAGAA-T--TAATGG--C---T--GC-----CCA-GACCTCCAAACTTACTAAGATA--ATAAT-TTTTCA-TG-TAGCAGGTTATC-GTG-ATAAA-----CTGTACTACATCA-TCTACTATCATTTTTTT
gi|9 : ACA-TGTAG-ATCTACATGCA-ATGATAA------AA-A---TA------T---G---GACGGA--------CAAAA-TGTCATTCTG----TTTC---ATGT-AGAGT-TAC-TAGTT-TC-T---TC--TTAAAAA-ATTA-A-AGATA---T--AAAATTT-A--CAC---TCAAAAGTG-CATGT-CA------A-C---AGAGTCAG-TT-G-TTAAAGGT-------------AA-C---------TGTCGAATAGAA-TACTATTGAAAT---T--GCATTTGTTA-GA-CTCGAAACATACCAAGATA--TAGTT-ATTTTA-TG-T-GCATG-TAT-----------------TTTGTT---TCG--TT-------TTTTTTTTATTATTGGCATTA-AATTCGTATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTATTTACTTTTTTATTGGCATCTATTTTTTTTTAAATCAATTATTCGTGGGTTTTTT