lowQualScore : 222222222222222222222222222222222222222222222 11111111111111 11111111111111111111111111111 1111111111111111111111111111111111 11111111111111111111111111111111111111111111111111
lowQualScore : 222 1 555555555555555555555555555555555555555555555 333 22 1 4444444444444444444444444 111 1 11 11 111 1 111 222 111 222222222 1111 11 11 44444444444 1 1 222222 88888888888888 1111 1 555555 111 1 11 111 2222222 11 22 1111 111 111 111 11 2222 11 333333333 4444444444444 1 22 111 00000000000000000000000000000 11 11 1 55555555555555 1 22222 22 444444444444444444444 77777777777 33333 22222 1 88888888888888888888888888888 1 1 33 33 1 1 3 11 4 2222222222222222222222222222222222 11 2 222 444 2 333 1 222 2 2 1 2 2 1 33333 2222 222 1 1 4 2 11 22 1 1 11 1 444444 11 22 1 1 22222222222222222222222222222222222222222222222222 6666666666666666666 1 2 1 33333333 11 1 1 11 111 111 4 11 5555555555555555555555555555 111 11111 2 111 222222 2 1 33333333
lowQualScore : 111 5 333333333333333333333333333333333333333333333 444 11 8 2 6 7 6 5 6 6 3 4 6 9999999999999999999999999 1 555 99 0 8 11 33 0 7 111 3 99 5 3 9 3333 111 333 111 22 99 111111111 5555 99 2 00 11111111111 0 5 2 2 0 333333 55555555555555 0 8 2222 0 8 333333 222 0 11 0 6 000 6666666 8 2 8 5 8 11 8 11 7777 8 6 222 333 0 333 8 0 33 5555 33 3 9 222222222 8 3 8 0 8 3 0 1 8888888888888 1 1 3 8 8 8 3 0 3 44 2 777 77777777777777777777777777777 00 22 5 22222222222222 6 0 22222 6 11 6 333333333333333333333 22222222222 88888 55555 5 55555555555555555555555555555 0 0 6 0 77777 33 00 0 0 1 66 99 0 3333333333333333333333333333333333 88 0 111 777 0 555 5 2 6 666 0 0 1 3 2 0 0 5 2 6 6 55555 1111 000 7 0 0 0 7 1 44 11 3 3 22 0 0 555555 00 8 55 11 44 0 0 3 1 11111111111111111111111111111111111111111111111111 1 1111111111111111111 5 1 0 3 66666666 00 6 5 0 6 33 666 2 777 0 66 4444444444444444444444444444 000 66666 0 777 444444 4 0 0 66666666
lowQualScore : ... . ............................................. ... .. . . . . . . . . . . . ......................... . ... .. . . .. .. . . ... . .. . . . .... ... ... ... .. .. ......... .... .. . .. ........... . . . . . ...... .............. . . .... . . ...... ... . .. . . ... ....... . . . . . .. . .. .... . . ... ... . ... . . .. .... .. . . ......... . . . . . . . . ............. . . . . . . . . . .. . ... ............................. .. .. . .............. . . ..... . .. . ..................... ........... ..... ..... . ............................. . . . . ..... .. .. . . . .. .. . .................................. .. . ... ... . ... . . . ... . . . . . . . . . . . ..... .... ... . . . . . . .. .. . . .. . . ...... .. . .. .. .. . . . . .................................................. . ................... . . . . ........ .. . . . . .. ... . ... . .. ............................ ... ..... . ... ...... . . . ........
lowQualScore : 000 0 000000000000000000000000000000000000000000000 000 00 3 2 4 0 0 2 7 7 8 4 7 8888888888888888888888888 0 888 22 6 0 00 44 8 4 777 7 22 2 7 2 0000 777 333 777 77 22 888888888 0000 00 5 88 00000000000 0 0 5 2 0 000000 00000000000000 8 0 2222 2 0 888888 444 2 00 8 0 000 0000000 0 2 0 2 0 22 0 22 0000 6 0 444 222 8 000 0 8 00 0000 44 2 2 000000000 0 2 0 8 0 8 8 8 4444444444444 8 0 0 0 0 0 2 0 2 55 2 555 22222222222222222222222222222 88 00 0 88888888888888 0 0 00000 0 00 0 222222222222222222222 22222222222 55555 00000 5 22222222222222222222222222222 0 0 0 8 00000 00 00 0 0 7 77 33 0 5555555555555555555555555555555555 55 0 000 000 0 000 0 5 0 000 0 0 5 0 5 0 0 0 5 0 0 55555 0000 555 0 5 0 0 3 0 33 00 3 3 00 0 8 888888 88 8 66 00 55 0 0 2 2 55555555555555555555555555555555555555555555555555 4 2222222222222222222 5 2 0 2 88888888 22 0 5 0 0 88 000 5 555 0 88 8888888888888888888888888888 222 88888 0 555 222222 0 0 0 55555555
consensus : ATATATAATACATT----AAAATATCAGCCTT-----TAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACC-AGAGNCT-TCCAACG--A---T--GTCTGTC---TG-GGACCAAT--GCT--GTATTTG-TC--CCC-ATGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGC----CT---GGTG--GTG-CCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTA------TCCATTTCCATTTCTTCTTTTGTATTGCC-T--G-AGATAGAG-GCACG-TGT--GTTGGTTCTCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAGAATA-------TT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAGTTG-GTTTATG----ATGGTATTTGTGGTCTTCCACG--ACTCTGCCCCATACAGTAATACC--CCGAGGACATTGCTTTTGA--AGATCTT-TAATTTGG-TGCTG----GTTC-GGATCTCGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTTC-AGAG-TTGCCGTCAGCGGTG-ATC-TTAC-TTCCGAGGTACACAAATT-CACTCACTTCCTC---GATGTC------------TN-------C-------AGGATGACTGTCTCTTCATTCTTTGGGGTTGA---CTTT--CA---TGATCTTAG-TT-TTA-TTGGTGTTGATCTTTA-AC-CCAA-T-T-GTTT--GGCTGTGCT-ATT-CANTATCTAC---TGTTTTG-----TCTTGGATTGTCTC-T-G-TGGC-GATTGANTAT---AGTA--AGGCAA-TAT-CATCCGCAAAGTCTAGATCTTCTAGCATTTCTGT--CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGTAGAAGGNACTAAGGAGGCAGCCTTGTNTTCACCCCAGTCATTCAATTCAAATGCTTCGGTCAAGCATTGTTTGTCCACATATAACTTGAGCANTGAAGTTCCACATAGAGCTATTCTGATGGTGGCCAGTNAGCTTGTCTGGAATNCCATAGTNAGCTGAGTATTCTTNCATAGTGCTGGTCAGGGTTTTAACAACTATGCGAAAGCCTTNGTAAAAGTCTTATGAAGTTGATGTA-GACTGTN-GAA-TTCCACTCG-TTGCTCTG-TTCGATT--NTNTGTCC-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTCCTAAA-TCCAG-C-TTGCTCTTTACNT-A-TTGT-----TCA--G--T-CCGCT-TNGTNTG-------------TTATCCTGTTGACTGAC--A-TG--AAT-CCTGCTGATGACTTTGC-TGGTAACT--GNCTCAGGC-AGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TGGGTAACTTTAC----CAACCAACC-CCTTTCT------CCAGAA-GG--ATGGTATCTTTTTCT---GTGGAC--CAAATTNTCTTGAAGTATCTTG-GT-AAG-GTATTTGAGG
Reference ( gi|1 ) : ATATCTCATAGATTTTATAAAATATC--TTTTCAAGATAACTT-TGAAAGTTTGATATATTACTTACTAAATGTTCTTCGTGTTGGGTTGCACAAAAGGTCGTC-ACC-AGAGTCT-TCCAATA--A---T--GCCTGTC--CTG-GGACCAAT--ACT--GTATTTG-TC--CCA-ATGTCCAACC---TCTGT--CCTTCATCTCCTTATCGGTGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGC----CT---GGTG--GT--CCATCGCAT-AGCA-A---------CCCTTGGGATG-GAATCAGGGTGCATTCTGC-AAACATGTCCTA------TCCATTT--------------GTATTGCC-T--G-AGATATAG-GCACGTTGTAAGTTGATTCTATGGTAT--AGTTCTTTGTCTGAGAT-TTTTTGTGGCCAGAATA-------TT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAGTTC-GTTTATG----ATGGTATTTGTGATCTTCCATG--ACTCTGCCCCATACAGTAATACT--CCAAGGACATTGCTTTTGG--AGATCTT-TAATTTGG-GGCTG----GTTC-TGATCTTGGCGGATTTCCATATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATCATTTTC-AGAG-CTGCCATCAGCAGTG-ATC-TTGC-TTCCGAGGTACACAAATT-CACTCATATTCTC---AATGTC------------TA-------C-------AGGATGACTGTCTCTTCAGCCTTTGGGGTTGA---CCTTGGCA---TGACCTTAG-TT-T-A-TTGGTGCTTGTTTTTA-AA-C-AA-T-T-ATTT--G-CTGTGTTTATTTCATTATCTAC---T-TTTTG-----TCTTGGATTGTCTC-T-GGTGGCCGATTGACTAT---A-TA--AGGCAA-TAT-CATCTGCAAAGTCCAGATCTTCTAGCATTTCTGTG-CATCGTCCATTTGA-TGC-CCCTTCTCTTGTTCTTTCATGCTTTC-GTTCATGATCCATGTCAATGCAGAAGGT-GAAAGTAG--GGCACTAAATAGACA-CCTTGTTTTCACTCCAGTC-TTCAATTCAAATGCTTCGG-CTAGC-TTG---GTCCACATATACCTTGAGCACTAAAG-TACACATAGAGC-ATTCTGATGATGG-CAATAAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCGTCCACAATGCTGGTC--GG-TTT-AC-ACTAT-CGAATGCCTTAGT-AAAGTC-TATGAAATTGATGTA-AACTGTT-GAA-TTCCACTCG-TTATTCTG-TTCAATT--TTAAGTCT-GATGGTAAATATCTGGTCAACACATGATCTTCCCTTTCTAAG-TCCAG-C-TTGCTCTTTACAC-A---GT-----TCA-----T-CCGCT-TTGTGTG-------------TTATCCTGTTGA--GA---A-T---AAT-CATGCTGATGACGTTGC-TGGTAACT--GAC---AGC-AGTATGAT-CCTTCGCCAGTTGT--TACAA--TCTGTCAAG---TCTCCTTTCGTAGACAACTTTA-----AAACCAATC-CCTTTCT------CCAGAA-GG--ATGGTAT-TTTTTCT---GTGAAG--CAAATTTTC-TGAAGTATCTTG-GT-AGG-G--TTTGAGG
gi|7 : ATATATAATACATT----AAAATATCAGCCTT-----TAACTTGT---AGTTT---AT-TTACTTA---AATCCTCATTGTGCTGGATTGCACATAGGGCCGTT-ACC-AGAGACT-TCCAATG--A---TATGTCTGTC--TTG-GGACCAAT--GCT--GTATT-G-TC--CCC-ATGTCCATCC---GTTGT--CCTTCATCTCCTTCTCGGTGAATTTTCT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGC----CT---GGTGATGT--CCATCGCAT-AGCA-A---------CCCTTGGGGTG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTA------TCCATTTCCATATCCTCTTTTGTATTGCC-T--G-AGATAGAG-GCACG--GT--GTTGATTCTCTGGTAT--AGTTCTTTGTTCGAGAT-TGTTTGTGGCCAGAATACAAAATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAGTTG-GTTTATG----GTGGTAGTTGTGGTCTTCAATA--ACTCTGCCTCATACAATAATACC--CCGAAGAAATTGCTTTTGA--AGATCTT-TAATTTGG-TGCTGACCAGTTC-TGGTCTTGGCAAATTTCGACATGTTCTTCAACATAGTAA---------AT-GCTCCTCTTGC-TTTTTGC-ATTCTGATTTGAACATT-TTTTCAAGAG-TTGCCATCAGCGGTG-ATT-TTGC-TTCCAGGGTACACAAATT-CACTCACTTCCTC---AATGTC------------TACCGTGTTC-------AGGGTGACTGTCTTTTCAGCCTTT-GGGTTGA---CTTT--CA---TGATGTTAGTTT-T-ATTTGGTGTTGATCTTTA-AACC-AACT-T-GTTTG-G-CTGTG----------TATCTAC---TGTTTTG-----T
gi|6 : TTACTTAATCCTCATCGTGCTGGTTTGCACATAAGGCTGTC-ACC-AGAGACT-TCCAATG--A---T--GTCT------TG-GGACCAAT--GCT--GTATTTG-TC--CCC-ATGTCCAGCC---TCTGT--TCTTCATCTCCTTCTCGGTGGAT---CT---TCTTCAAGTCTCTTTTGGCCTGCCTCTCT--TCCTCTTGC----CT---GGTG--GTGTCCATCGCAC-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAGCATGTCCTA------TCCATTTACATTTCTTCTTTTGTATTGCC-T--G-AGATAGAG-GCACG--GT--GTTGGTTCTCTGGTAT--AGTTCTTTGTTTGAGAT-ATTTTGTGGCCAGAATA-------TT-CACAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAGTTG-GTTTATG----ATGGTATTTGTGGTCTTCCATT--ACTCTGCCCCATACAGTAATACC--CCAAGGACATTACTTTTGA--AGATCTT-TA-TTTGG-TGCTG----GTTT-GGATCTCGGGGGATTTCCAAATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATCTTTTAC-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATT-CACTCACTTCCTC---GATGTC------------GA-------CCGTGTTCAGGATGACTGTCTCTTCATTCTT-GGGGTTGA---CTTT--CG---TGATCATAG-TT-TTA-TTGGTGTTGATCTTTA-AC-CCAA-T-TTGTTT--GACTGTGTT-ATT-CAT-ATCTATCGTT-TTTTAAAAGTTCTTGGAT-GTCTC-T-G-TGGC-GAT-GAG-AT---AGTA--AGGCAA-TAT-CATCCGCAAAGTCTAGACTTTC---------------ATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCT
gi|19 : CTTCGTGTTGGAGTGCACATAAGGCCATC-ACC-AG-CTCTCTCCAACA------------CGTC--------ATCAATAAACT--GTAT
gi|20 : TCGTGCTGGTTTGCACATAAGGCCGTC-ACC-
gi|15 : aattgtagattggctctctcttaatccttaGGTAGCACATAAGGCC-TCGACT-AGAGCCC-GCCATTC--A---T--GTTGGTTGATTG-AAAC--AC--ACT--CCAGATG-CC--CCCCATGCCCAACC---TCTCT--CCTTCATCTC----------------CT---CC---AAGTTTCCTTGGGGCGGCTTCGCT--TTCT-TCGCCCATCT---GG-A--GT--CCAT
gi|16 : CACATAAGGCCTTC-ACAGAGGGTTT-TCAACTC--AGTCT--GCCTG----CTG----CTAAT---CTTAGTATCTGACC--CCA-A-GTCCATCCAAAT---T--CTTTCATTTCTTTCTGAACTGAT---CTCCTCC---ATGTTTCTTTAAGTCGTCCCCTCT--Tt
gi|3 : CT-TCCAACATGA---T--ATCTGTC--ATGCGGACCAGT--GCT--GTATT-G-TCGCCCA-ATGTCCAGCC---TCTGTTTCCTTCAT-TCCTC-TCGGTGGAT---CTTCTCC---AAGTCACTTTTGGCCTGC-TCTCT--TCCTCTTGC----C----AGTG--GTG-TCATCGCATTAGCA-AAAAAAAACCCCCTTGGGATG-GAATCAGG-TGCATCCTGCTAAACATGTTCTA------TCCATTTCCATTTCTTCTTT-GTATCGCC-TTAA-AGATAGAGCGCACGGTGTTGGTT---TCTCTGGTATTTAGT-CTTTGTTTGAGATCTTTTTGTGGCCAGAATA-------TTTCGTAGAAATCCACCGGAGACCATTCGTGTC-TGGAAGACATCTAGTTTGGTTTATG----ATGGTA-TTGTGGTCTTCCATG--ACTCTGCCCAATACAGTAATACTTCCCA--GACATTGCTTTTTGAAAGATCTTGTAATTTGT-TGCTG----GTTTGGGATCTTGGCGGATTTCCATATGTTCTTCAGCACAGCAT---------ATGGCCCCTCTTGCTTTTTTGTAATTCTGGC-TGTACGTC-TTTTC-AGAGTTTGCCGTCAGAGGTG-ATCGTTACTTTCCGAGAAACAC-AATT-CACTCAC-TTCCCTCGAATGTCGGACCCCCCGTGTT-------C-------ATGATGCAAGTCCTTTCATTCTTTTGG--TGAAACTTTTTTCATTTTGATCTTAG-TTAT-A-TTGGTGTTGATCTTTACGC-C-AA-T-T-TTTTTGG-CTGTG-TTGTTTCCATATCTAC---TGTTTTG-----TCTTGGATTGTCTCGTGGGGGGACGATTGA-GAT---AGTT--AGGCAATTAT-CATCCGCAAAGTCTAGATC-TCT----TTTCTGT--CATCGTCCAGGTGATTGC-CCCTTCTCTTGTTCTTTAACACTTTT-GTTCATGATCCA-GTCAATGCAGAAGGTAAAAAGTAGAAGGGACTAAGGAGGCAGCCTTG-TTTCACCCCAGTCATTCAATTC-AATGCTTCGGTCAAGCATTG---GTCCACATATAACTTGAGCACTGAAGTTCCACATAGAGC-ATTCTGATGATGGCCAGTGAGTTTGTCTGGAATTCCATAGTTAGCTGAGTATTCTTCCATAGTGCTGGTCAGGA-TTTAACAACTAT-TCAAAACCTTCGTAAAAGTCTTATG-AGTTGATGTAGAACTGAG-CAATTTCCATTCG-TTGCTCTGCTTCGATT--ATTTGTCCGGATGGTAAATATCTGGTCAGCACACG
gi|12 : C---TTTGT--CCTTTATATTTCTCTCCACTGTT---CT---CC---ATGTCCCCCTTGGTCTTCC-CTTTGCCCCTCTTTC----CTTGAGGT---GT--CTGTCG--G-AGCACA---------CATCTGGTAAGTGATTCCAAGAGCCTTCAGC-AGACATGACCCAGCCATCTCCATTT--------------TTG-TACCAT--GAAGATATAT----TGTTGTGTCTCCA-TCCAT--CAT--TGTT-TTCATTTGAAAT-GATGTTTAGTCAGAAGG-------TT-TTGAGGA-TCCATCTTAGGC-AT--ATGTTATGGATGACCTCCA-----GCCTATGCTCTATGGTTCTAGTTGTTTTCCACAATATTCAGATCTGTATAGAAGAACA--CTGAGAATGCTGCTTCTGA--AAAT-TT-TGATCTTG-GTATGT---ATGC-TGATGTAAAAGTGTTTCAAGATTAACTTGAGTAGAGCAAAGACTTGAGAT-GC----CTTGC-T-----T-ATTCTTGCCTGC--------------AG-TTGCCATCTGTAGTC-ATC-GTAC-TGCCCAAATAAACAAGTTGCAC----ATCCTC---tc
gi|14 : tGTCCTA------TCCATTTCCATTTCTTCTTTTGCATTGCC-T--G-AGATAGAG-GCATG--GT--GTTGGTTCTCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAAAATA-------TT-TGCAGAA-TCTGCCGGAGAC-AT-TGTGTC-TGGAAGACATCTAGTTG-GTTTATG----ATGGTATTTGTGGTCTTCCAAG--ACTCTGCCCCATACAATGATACT--CCAAGGTCATTGCT
gi|17 : --AGATCTT-TAATTTGGTGGCTG----GTTT-GGATCTTGCTAGATTTCCAAATGTTATTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTCA---------------------CGGTGAATC-TTAC-TTCCGAG
gi|10 : TGTA------------TT-------C-------AGGATGACTGTCTCTTCATTCTTTGGG-TTGA---CGTT--CA---TGATCTTAG-TT-TTA-TTGGTGTTGATCTTTA-AC-CCAA-TCT-GTTT--GGCTGTGCT-ATT--AGTATCTAC---TGTTTTG-----TCTTGGAT-GTCTC-T-G-TGGC-GATGAGATA----A-TA--AGACAA-TAT-CATCCGCAAAGTCTAGATCTTCTAGCATTTCTGT--CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACACTTTT-GGTCATGATCCA-GTCAATGCAGAAGGT-GAAA
gi|9 : cGAATGTCTC-T-G---------TGACTATGAGA-TAGTAAGTAA-TATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGTCATCGTCCAGGTGA-GGTGCCCTTTTCTTGTTCTTT-ACGCTTTTTGTTCATCATCCA-GTCAATGCAGA------------G--GACA---------------TGTGTTCACTCCAGTC-TTCAAT-CAAATGCTTCGGTCAAGC-TTGTTTGTCCACATATAACTTGAGCAATGAAG-TCCATATAGAGTTATTTTGATGGTGG-CAATTAGCTTGTCTGGAATGCCATAGTGA-TTGAGTA-TCTTACATAGTGCTGGTC--GGTTTT-AC-ACTATGCGAAAGCCTTGGTAAAAGTC-TATGAAGTTGATGTA-GACTGTTAGAA-TTCCACTCGTTTGCTCTG-TTCAATG--TAGTGTCT-GATAGTAAATATCTGGTCAGCAC--------CTCTTCTTAA-----AG-CGTTGCTCTGCACTC-A---GTTGTGGTCAATGTTT-TTGTTGTTAGGTGTTTCCGCTTCGATTTATCCTGCTGACTGAC--A-TATGAAT-C-TGCTG-TGACTTTGC-TGGTAACT--GTCTCAGGC-AGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTAC----CAACCAACC-CCTTT-T------TCAGAA-GG--AT-GTATCTTTTTTT---GTGGAC--CAAATTATCTTGAAGTATCTTG-AT-AAA-GTATTTGAagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaaaatgatgtagactgtagaattccactcgttgctctgttcaattatttgtcggatggtaaatatctggtcagcacacgactttccctatctaaatccagcttgctctttacgtagttgttcacctgcttaggtaattgttgattggctgttttacgtcatttcaattaat
gi|21 : AAAGTCCAGATCTTCTAGCATTTCTGT--CAT
gi|10 : ATGAAAATGATGTA-GACTGTA-GAA-TTCCACTCG-TTGCTCTG-TTCAATT--ATTTGTCG-GATGGTAAATATCTGGTCAGCACACGACTTTCCCTATCTAAA-TCCAG-C-TTGCTCTTTACGT-AGTTGT-----TCA-----C-CTGCT-TAG---G-------------TAAT--TGTTGA--
gi|5 : ctgtattcaggatgactgtctcttcattctttgggttgacgttcatgatcttagttttattggtgttgatctttaacccaatctgtttggctgtgctattagtatctactgttttgtcttggatgtctctgtggcgatgagataataagacaatatcatccgcaaagtctagatcttctagcatttctgtcatcgtccaggtgatgccccttctcttgttctttacacttttggtcatgatccagtcaatgcagaaggtgaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCTG-CTCCATTATTTA--TCT-GAGGGTAAAGATTTGGTCGTTACATGATCTTCCCCTCCGGAA-TCCCG-C-TTGTTCCTTTCTG-A---GC-----TTAGGG--T-CTATT-TGGTCTC-------------TAATCTTGTTAA--GT---A-T---GAT-CTTGCTCAGCACTTTACTTGAT-ACT--GAC---AGG-AGCATTAT-TCCTCTCCAGTTGT--TGGGG--TCTGT-GAGATTTCCCCTTTT-TGGA-AGTTTTACTAGGAGGTCAG------TTTT------CCAG---GGCTCTGGTGT-CAATTCA---GT--AGTCCAGATGTTC-TGCAGGATGTTT-GTGAGG-A--CTTGttggctgttttacgtcatttcaattaat
gi|2 : cACGATCTTTCCTTTCTAAAATCCAGGC-TTGC-CTTTGCGTTATTTGTG----TCA-----TACCGCT-TTGTCTG-------------TTATCCTGTGCA--GA---AAT---AATGCCTACTGATGAT-TTGC-TGGTAACTTGAAC---AGTTAGCATGATTCCCTCGCCAGTTGTGGTACAAATCCTGTCAGG---TCTCCTTTC-TGGGTAACTTTA-----CAATCAAACGCCTTTCCACTGACCCAGAAAGG--ATGGTAT-TTTCTCTTTTGTGGAC--CAAATTTTC-TGAAGTATCTTGCGT-AAGTA--TTCGAGGgtgggtgactgtttcctcagccttgagcatatcggcatgaatttggtccatccctagagattagctgtttttcaaagacttgatagctgtttagacttcctcaagtgatggttggttggtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactttttcaaaatgttctttccagcacttcaattcttcttcaaggctatctgtgagtgtaccatttttcttgcgtattggtgtatttggcggagaactgtaacccccactaagagtcttggtaatttggtacagggttttcatgtcttgttttgctgctgcgagttccgcttctgttgcaagcttgtcgatgtaatttttcttgtctgttcttgcacttcgctttacatttttgtctttttgtaagtatttgcttttcaattgctcttttatgcggtttgatttagttgacagcattttcttcttggtttcttttctttcgtctatcttaccccatgtctcttttgatatccattcctcgtttttcctcttttaaagtattttttccagcttttagcagtgtattgtta
gi|4 : -----T-CCGCT-TCG-AT--------------TTATCCTGCTGACTGACATA-TG--AAT-C-TGCTG-TGACTTTGC-TGGTAACT--GTCTCAGGC-AGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTAC----CAACCAACC-CCTTT-T------TCAGAA-GG--AT-GTATCTTTTTTT---GTGGAC--CAAATTATCTTGAAGTATCTTG-AT-AAA-GTATTTGAGtgtttgaagttccttctgcttttcaaaagttctgcattttttgtctattcctgcagctttcccattctttagaggcagacaatgcctttttgacttcactgatgtcaggtggttctgtgttgataatcaagcttgttttcagtggtgttataactgcctctgtttctggtcgtcatgttgaagacttgtttcaaatgtgatctatttccagcatttacaaaatctcttcttttttgacaggatgttaccttgctgattctttgaataggtatgttcgttgcgtggaatttccccgctaaaaagatcttcgtcaaagcggtagtaggatttgcatgtctttgtttttgaaggagcggctgttttctgcttcctcttgctaagctctcctaatatatgcctttcgatctgctttagctcccatctcacctctttatctagatctcctacttttttgccccagcttttcctttactctctctgatttcgtgataggatgctcttttctttccttttgttttcttccgcctttctgcaggtttcgtctgaacatccactcctcctttttttacgtttctttggccttaaaatttgttttccaagtctccaaacagtactttatgtaaaatcttccatatccacatcttgttttccatctgcaaggactgaaaatcggtttgcaaaccttctagttagaaagttcgttaacctgtgggtttttcagtttatgttgatgtcaagggtggcggtcttttggtcttttctcttgctttacggagttttaaactttagttttgccagcactagggattgatcgctaacaattgtctgcaccttgttttgcactacatccagtagactacttctccaatctcctgttgatgaattacatgatctatttggtttctgggtttttaccgtctggaagaaattccaatgtttgttttgtggatatctctatgcataaaagatggtccaccaacaccaagttgttttcctgacagaaacgtgctgccagtcggtctccatttgtcaattacttattctcccattcctttgctgtcccattaatgtttcttt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GTTGAAGACTTGTTCAAAGTGATCTATCCAGCATTTCAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATACTTCGTCAAGCGATATAAGGATTACATGTCTTGTTTTGAAGCGGCTGTTTCTGCTTCCTCTGCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTTGTTCAGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTCTCCACCTTCTGCCAAGTTTCGTCTGAAATCCACTCCTCCTTTTTACATTTCTTTGGCCCTAGAATTTGTTTTCCAGTCTCCAACAGTACTTTGTTAAAATCTTCCATATCCACATCTTCTTTTCCATCTGCAAGGACTGAAAATCGGTTGCGAACTTCTGGTTGGAAAGCTCGTTGAACCTGTGGGTTTTTCAGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTTAGTTTTGCCCAGCACTAGGGATTGATCGCTACCAATGTCTGCACCTTGTTTTGNNNNAGTAGACTACTTCTCAATCTCCTGTTGATGATTACATGATCTATTTGTGTCCTGGTTCTGTCCTT
Unaligned ( gi|11 ): TTACTCTCTCTTATTTTGTTGATAGGATGCTCTTTTTCTTCCACCTTCTGCCAGGTTTTATCAAAAATCCACACCTCCTTCTTACGTTTCTTTGACCCTAGAATTTGTGTTCCAGTCTCCAACAGTACCTTGTTTTAAAACTTCCATATCCATATCTTCGTTTTCATCTGCCAGGACTGAAAATCGGTTGCGAACTTCTAGTTGGAAAGTTCGTTTAACTTGTGGGTTTTTCAGTTTGTTGATGTCAATGGGTGGTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTCAGTTTTGCCAGCACTAGGGAGTGATCGCTACCAATGTCTGCACCTTGTTTTACCACTACATCCAATAGACTACTTCTCCATCTCCTGTTGATGATTACAAGATGAATTTGGTTTCTGGTTTTACCGTCTGGAAAATTCCATGTTGTTTTGTGGATGTCCTTGTGCATAAAGATCGTTCCGCCAATCAATAAGTTGATTTCCTGACAGAATGTGCTCAGTCGGTCTCCATTGTCATTACTACTTGCTGTCCCATTATGTTTTCT
Unaligned ( gi|13 ): ATCATCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATGGGTACGTTCGTTGTGTGGAATTTCCCTGCTATAGTCTTCGTCAAGCGTTATAAAGATTTCATATCTTGTTTAGAAGCGGCTATTTCTGCTTCCTCTGCTAACTCATGCATGTATGCATGCATGTCTTTCTGTCTGCTTTAGTTCCCTTCTTCACCTGTTAATCTAGATCTCTATACTCGTTGCCCAGCTTTTCCTTTACTCTCTCTCTCTCTCTCTCTTTTTTATTTATATTTTTTTC
Unaligned ( gi|18 ): TCCATATCTTCTTTTCCATCTGCAAGGACTGGAAATCGGTTGCGTACTTCTAGTTGGAAAGCTCGTTGAACCTGCAGATTTTTGTTGATGTCAAGGGGTGGTGGTCTT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 4444 11 55555 222 333333 111 222 111 111 222 111 1 11 333333333 33 2222222 1111 1111 11 2222 222222222 11111111 999999999999 1 22222 11 111 1 33333333333 222222 1 22222 33333 111 1 1 2222222222 11 2 1 2 2 333 2 2 2 2 2 333333333333 1 2 1 1 1 1 11 11 00000000000000000000000000000000000000 2222 1111111 2222 111 1 111 1 11 11 111 3333333 11 1 1111 2 1
lowQualScore : 3 3 2 2222 88 00000 6 333 111111 7 2 3 1 3 5 66 444 77 555 6 6 1 3 99 7 6 6 6 1 000 1 77 3 5 33 000 000 000 0 77 0 6 8 11 8 222222222 8 1 8 2 44 3 99 6 00 99 6 6 6 99 99 6 1111111 6 2 6 6 77 6 6 4444 3 3333 99 0 11 6 6 6 0000 2 6 4 1 1 666666666 6 1 6 6 2 88888888 6 2 6 6 6 3 1 8 8 333333333333 1 0 55 0 00000 11 444 0 8 0 8 8 8 8 77777777777 333333 8 0 88 88888 22222 3 3 8 8 3 99 6 8 8 111 0 0 3 0 9999999999 00 3 4 0 3 7 7 7 3 777 1 3 3 0 3 0 1 1 1 3 3 1 222222222222 5 6 1 7 3 3 0 0 1 0 0 8 4 1 1 22 11 8 8 0 11111111111111111111111111111111111111 1 4444 6666666 1111 666 0 8 0 666 3 0 8 11 11 444 8 3 3 6666666 88 11 0 5555 1 0 8 6 0
lowQualScore : . . . .... .. ..... . ... ...... . . . . . . .. ... .. ... . . . . .. . . . . . ... . .. . . .. ... ... ... . .. . . . .. . ......... . . . . .. . .. . .. .. . . . .. .. . ....... . . . . .. . . .... . .... .. . .. . . . .... . . . . . ......... . . . . . ........ . . . . . . . . . ............ . . .. . ..... .. ... . . . . . . . ........... ...... . . .. ..... ..... . . . . . .. . . . ... . . . . .......... .. . . . . . . . . ... . . . . . . . . . . . . ............ . . . . . . . . . . . . . . . .. .. . . . ...................................... . .... ....... .... ... . . . ... . . . .. .. ... . . . ....... .. .. . .... . . . . .
lowQualScore : 0 0 5 5555 00 00000 7 333 777777 3 5 5 0 0 7 77 444 99 000 7 7 0 7 22 3 7 7 7 0 000 7 99 0 0 44 000 000 000 1 99 8 0 0 88 0 000000000 0 4 0 5 00 2 22 7 33 22 7 7 7 22 22 7 7777777 7 2 7 7 77 7 7 2222 5 5555 22 7 00 7 7 7 8888 5 7 8 0 0 777777777 7 0 7 7 2 55555555 7 2 7 7 7 8 4 0 0 000000000000 0 6 88 0 00000 00 000 8 0 0 0 0 0 0 00000000000 000000 0 6 88 00000 66666 2 2 0 0 2 22 7 0 0 000 0 0 2 2 3333333333 33 3 0 7 7 3 3 3 7 777 0 7 7 7 3 7 0 0 0 3 7 0 333333333333 0 7 0 3 7 2 0 0 0 0 0 0 6 0 0 66 88 0 0 8 44444444444444444444444444444444444444 0 7777 2222222 8888 222 6 0 8 888 2 6 0 00 00 000 0 8 2 2222222 88 00 0 0000 0 4 0 4 6
consensus : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTGGTGGTGTCC-ATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAGAATA-------TT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAGTT-GGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTCGG-ATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------ATG-CCCCTCTTGCTTTTT-GTA-TTCTGGCTTGTACGTC-TTTT-C-AGAGTT-GCCGTCAGCGGTG-ATC-TTGCTT-CCGAGGTACACAAATTCACTCACTTCC-TCGA-TGTCGACCGCG-----TTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CAT---GATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTT-GGCTGTG-TTA-TT-CA-TATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGAG-ATAGTAAGGCAAT-AT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGAT-GC-CCCTTCTCTTGTTCTTT-A-CGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGTGAAA-GTAG--GG-ACTAAGGAGGCA-CCTTGT-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTT-AC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAGAA-TTCCACTCG-TTGCTCTG-TTCAATTATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTACGC-AGTT-GT--TCA-----------------------TCCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT-CCTGCTGATGACTTTGC-TGGTAACTGNCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
Reference ( family-1222 ) : ATATATAATACATT----AAAATATCAGCCTT-----TAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTGGTGGTG-CC-ATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACGT-GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAGAATA-------TT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAGTT-GGTTTATG----ATGGTATTTGTGGTCTTCCACG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTCGG-ATCTCGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------ATG-CCCCTCTTGCTTTTT-GTA-TTCTGGCTTGTACGTC-TTTT-C-AGAGTT-GCCGTCAGCGGTG-ATC-TTACTT-CCGAGGTACACAAATTCACTCACTTCC-TCGA-TGTC------------TNCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CAT---GATCTTAGTTTTA-TTGGTGTTGATCTTTAACCCAA-T-T-GTTT-GGCTGTG-CTA-TT-CANTATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGANTATAGTAAGGCAAT-AT-CATCCGCAAAGTCTAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGAT-GC-CCCTTCTCTTGTTCTTT-A-CGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGTGAAA-GTAGAAGGNACTAAGGAGGCAGCCTTGTNTTCACCCCAGTCATTCAATTCAAATGCTTCGGTCAAGCATTGTTTGTCCACATATAACTTGAGCANTGAAGTTCCACATAGAGCTATTCTGATGGTGGCCAGTNAGCTTGTCTGGAATNCCATAGTNAGCTGAGTATTCTTNCATAGTGCTGGTCAGGGTTTTAACAACTATGCGAAAGCCTTNGTAAAAGTCTTATGAAGTTGATGTAG-ACTG-TNGAA-TTCCACTCG-TTGCTCTG-TTCGATTNTNTGTCC-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTCCTAAA-TCCAG-C-TTGCTCTTTACNT-A-TT-GT--TCA--G--------------------TCCGCTTNGTNTGTTATCCTGTTGACTGAC--AT--GAAT-CCTGCTGATGACTTTGC-TGGTAACTGNCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TGGGTAACTTTACCAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTCTGTGGACCAAATTNTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
gi|1 : ATATCTCATAGATTTTATAAAATATC--TTTTCAAGATAACTT-TGAAAGTTTGATATATTACTTACTAAATGTTCTTCGTGTTGGGTTGCACAAAAGGTCGTC-ACCAGAGT-CTTCCAAT--AAT--GCCTGTCC--T-G-GGACCAATACT--GTATTTGTC-CCA-A-TGTCCAACC---TCTGT--CCTTCATCTCCTTATCGGTGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTGGTGGT--CC-ATCGCAT-AGCA-A---------CCCTTGGGATG-GAATCAGGGTGCATTCTGC-AAACATGTCCTATCCATTT--------------GTATTGCCT--GAGATATAG-GCACGTTGTAAGTTG-AT-T-C--TATGGTAT--AGTTCTTTGTCTGAGAT-TTTTTGTGGCCAGAATA-------TT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAGTT-CGTTTATG----ATGGTATTTGTGATCTTCCATG--ACTCTGCCCCATACAGTAATAC--TCCAAGGACATTGCTTTT--GGAGATCTT-TAAT-TTGGGG-CTG----GTTCTG-ATCTTGGCGGATTTCCATATGTTCTTCAGCATAGCAA---------ATG-CCCCTCTTGCTTTTT-GTA-TTCTGGCTTGTACATCATTTT-C-AGAGCT-GCCATCAGCAGTG-ATC-TTGCTT-CCGAGGTACACAAATTCACTCATATTC-TCAA-TGTC------------TACAGGATGACTGTCTCTTCAGCCTTTGGGGTTGA-----CCTTGGCAT---GACCTTAG-TTTA-TTGGTGCTTGTTTTTAA-ACAA-T-T-ATTT--GCTGTGTTTATTT-CATTATCTACT-TTTT------GT-CTTGGATTGTCTCTGGTGGC----CGATTGACTATA-TAAGGCAAT-AT-CATCTGCAAAGTCCAGATCTTCTAGCATTTCT--GTGCATCGTCCATTTGAT-GC-CCCTTCTCTTGTTCTTTCA-TGCTTTC-GTTCATGATCCATGTCAATGCAGAAGGTGAAA-GTAG--GGCACTAAATAGACA-CCTTGTTTTCACTCCAGTC-TTCAATTCAAATGCTTCGG-CTAGC-TTG---GTCCACATATACCTTGAGCACTAAAG-TACACATAGAGC-ATTCTGATGATGG-CAATAAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCGTCCACAATGCTGGTC--GGTTT--AC-ACTAT-CGAATGCCTTAGT-AAAGTC-TATGAAATTGATGTAA-ACTG-TTGAA-TTCCACTCG-TTATTCTG-TTCAATTTTAAGTCT-GATGGTAAATATCTGGTCAACACATGATCTTCCCTTTCTAAG-TCCAG-C-TTGCTCTTTACAC-A----GT--TCA-----------------------TCCGCTTTGTGTGTTATCCTGTTGA--GA---AT---AAT-CATGCTGATGACGTTGC-TGGTAACTGAC---AGCAGTATGAT-CCTTCGCCAGTTGT--TACAA--TCTGTCAAG---TCTCCTTTCGTAGACAACTTTA-AAACCAATCCCTTTC------TCCAG-AAGG--ATGGTAT-T--TTTTCTGTGAAGCAAATTTTC-TGAAGTATCTTG-GTAGGG--TTTGAGG
gi|10 : -TGTA------------TTCAGGATGACTGTCTCTTCATTCTTTGGG-TTGA-----CGTT--CAT---GATCTTAGTTTTA-TTGGTGTTGATCTTTAACCCAA-TCT-GTTT-GGCTGTG-CTA-TT--AGTATCTACTGTTTT------GT-CTTGGAT-GTCTCT-GTGG-----CGAT-GAG-ATAATAAGACAAT-AT-CATCCGCAAAGTCTAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGAT-GC-CCCTTCTCTTGTTCTTT-A-CACTTTT-GGTCATGATCCA-GTCAATGCAGAAGGTGAAA-
gi|10 : cATGAAAATGATGTAG-ACTG-TAGAA-TTCCACTCG-TTGCTCTG-TTCAATTATTTGTCG-GATGGTAAATATCTGGTCAGCACACGACTTTCCCTATCTAAA-TCCAG-C-TTGCTCTTTACGT-AGTT-GT--TCA-----------------------CCTGCTTAG---GTAAT--TGTTGATTGGC--agnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaaaatgatgtagactgtagaattccactcgttgctctgttcaattatttgtcggatggtaaatatctggtcagcacacgactttccctatctaaatccagcttgctctttacgtagttgttcacctgcttaggtaattgttgattggctgttttacgtcatttcaattaat
gi|12 : ctgtattcaggatgactgtctcttcattctttgggttgacgttcatgatcttagttttattggtgttgatctttaacccaatctgtttggctgtgctattagtatctactgttttgtcttggatgtctctgtggcgatgagataataagacaatatcatccgcaaagtctagatcttctagcatttctgtcatcgtccaggtgatgccccttctcttgttctttacacttttggtcatgatccagtcaatgcagaaggtgaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnC---TTTGT--CCTTTATATTTCTCTCCACTGTT---CT---CC---ATGTCCCCCTTGGTCTTCC-CTTTGCCCCTCTTTCCTTGAGGTG-TCTGTCGGA---GCACA---------CATCTGGTAAGTGATTCCAAGAGCCTTCAGC-AGACATGACCCAGCCATCTCCATTT------TTGTA---CC------ATGAAG-ATATAT--T--GTTGTGTCT-CCATCCATCAT--TGTT-TTCATTTGAAAT-GATGTTTAGTCAGAAGG-------TT-TTGAGGA-TCCATCTTAGGC-AT--ATGTTATGGATGACCTCCA-----GCCTATGCTCTATGGTTCTAGTTGTTTTCCACAATATTCAGATCTGTATAGAAGAAC--ACTGAGAATGCTGCTTCT--GAAAAT-TT-TGATCTTGGTA--TGT---ATGCTG-ATGTAAAAGTGTTTCAAGATTAACTTGAGTAGAGCAAAGACTTGAGATG-C----CTTGCT------TA-TTCTTGCCTGC---------------AGTT-GCCATCTGTAGTC-ATC-GTACTG-CCCAAATAAACAAGTT---GCACATCC-TCtgttttacgtcatttcaattaat
gi|14 : tGTCCTATCCATTTCCATTTCTTCTTTTGCATTGCCT--GAGATAGAG-GCATG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAAAATA-------TT-TGCAGAA-TCTGCCGGAGAC-AT-TGTGTC-TGGAAGACATCTAGTT-GGTTTATG----ATGGTATTTGTGGTCTTCCAAG--ACTCTGCCCCATACAATGATAC--TCCAAGGTCATTGCT
gi|15 : GGTAGCACATAAGGCC-TCGACTAGAGC-CCGCCATT--CAT--GTTGGTTGATT-G-AAAC--ACACT--CCAGATGCC-CCCCA-TGCCCAACC---TCTCT--CCTTCATCTCCT-------------------CC---AAGTTTCCTTGGGGCGGCTTCGCT--TTCT-TCGCC
gi|16 : CACATAAGGCCTTC-AC-AGAGGGTTTTCAAC--TCA--GTCTGCC---T-G-CTGCTAAT-CTTAGTATCTGAC-CCC-A-AGTCCATCCAAAT---T--CTTTCATTTCTTTCTGAACTGAT---CTCCTCC---ATGTTTCTTTAAGTCGTCCCCTCT--Tcatctggagtccatt
gi|17 : AGATCTT-TAAT-TTGGTGGCTG----GTTTGG-ATCTTGCTAGATTTCCAAATGTTATTCAGCATAGCAA---------ATG-CCCCTCTTGCTTTTT-GTA-TTCTGGCTTGTACGTC----------------------ACGGTGAATC-TTACTT-CCGAG
gi|19 : TCGTGTTGGAGTGCACATAAGGCCATC-ACCAGCTC-TCTCCAAC---AC--GTC
gi|2 : ctACGATCTTTCCTTTCTAAAATCCAGGC-TTGC-CTTTGCGTTA-TTTGTG-TCA--T--------------------ACCGCTTTGTCTGTTATCCTGT--GCAGAA--AT---AATGCCTACTGATGA-TTTGC-TGGTAACTTGAACAGTTAGCATGATTCCCTCGCCAGTTGTGGTACAAATCCTGTCAGG---TCTCCTTTC-TGGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGG--ATGGTATTTTCTCTTTTGTGGACCAAATTTTC-TGAAGTATCTTGCGTAA-GTATTCGAGGatcaataaactgtat
gi|20 : TTGT---AGATT---GG-CT-CTCTCTTAATCCTTATCGTGCTGGTTTGCACATAAGGCCGTC-ACCtgtttgaagttccttctgcttttcaaaagttctgcattttttgtctattcctgcagctttcccattctttagaggcagacaatgcctttttgacttcactgatgtcaggtggttctgtgttgataatcaagcttgttttcagtggtgttataactgcctctgtttctggtcgtcatgttgaagacttgtttcaaatgtgatctatttccagcatttacaaaatctcttcttttttgacaggatgttaccttgctgattctttgaataggtatgttcgttgcgtggaatttccccgctaaaaagatcttcgtcaaagcggtagtaggatttgcatgtctttgtttttgaaggagcggctgttttctgcttcctcttgctaagctctcctaatatatgcctttcgatctgctttagctcccatctcacctctttatctagatctcctacttttttgccccagcttttcctttactctctctgatttcgtgataggatgctcttttctttccttttgttttcttccgcctttctgcaggtttcgtctgaacatccactcctcctttttttacgtttctttggccttaaaatttgttttccaagtctccaaacagtactttatgtaaaatcttccatatccacatcttgttttccatctgcaaggactgaaaatcggtttgcaaaccttctagttagaaagttcgttaacctgtgggtttttcagtttatgttgatgtcaagggtggcggtcttttggtcttttctcttgctttacggagttttaaactttagttttgccagcactagggattgatcgctaacaattgtctgcaccttgttttgcactacatccagtagactacttctccaatctcctgttgatgaattacatgatctatttggtttctgggtttttaccgtctggaagaaattccaatgtttgttttgtggatatctctatgcataaaagatggtccaccaacaccaagttgttttcctgacagaaacgtgctgccagtcggtctccatttgtcaattacttattctcccattcctttgctgtcccattaatgtttcttt
gi|21 : aaAAAGTCCAGATCTTCTAGCATTTCT--GT-CAT
gi|3 : -CTTCCAACATGAT--ATCTGTCA--T-GCGGACCAGTGCT--GTATT-GTCGCCC-AATGTCCAGCC---TCTGTTTCCTTCAT-TCCT-CTCGGTGGAT---CTTCTCC---AAGTCACTTTTGGCCTGC-TCTCT--TCCTCTTGCC-AGTGGTG-TC-ATCGCATTAGCA-AAAAAAAACCCCCTTGGGATG-GAATCAGG-TGCATCCTGCTAAACATGTTCTATCCATTTCCATTTCTTCTTT-GTATCGCCTTAAAGATAGAGCGCACG--GT--GTTG-GT-TTC--TCTGGTATTTAGT-CTTTGTTTGAGATCTTTTTGTGGCCAGAATA-------TTTCGTAGAAATCCACCGGAGACCATTCGTGTC-TGGAAGACATCTAGTTTGGTTTATG----ATGGTATT-GTGGTCTTCCATG--ACTCTGCCCAATACAGTAATACTTCCCA--GACATTGCTTTTTGAAAGATCTTGTAAT-TTGTTG-CTG----GTTTGGGATCTTGGCGGATTTCCATATGTTCTTCAGCACAGCAT---------ATGGCCCCTCTTGCTTTTTTGTAATTCTGGCT-GTACGTC-TTTT-C-AGAGTTTGCCGTCAGAGGTG-ATCGTTACTTTCCGAGAAACACAA-TTCACTCACTTCCCTCGAATGTCGGACCCCCCGTGTTCATGATGCAAGTCCTTTCATTCTTTTGG--TGAAACTTTTTT--CATTTTGATCTTAGTTATA-TTGGTGTTGATCTTTACGCCAA-T-T-TTTTTGGCTGTG-TTG-TTTCCATATCTACTGTTTT------GT-CTTGGATTGTCTC--GTGGGGGGACGATTGAG-ATAGTTAGGCAATTAT-CATCCGCAAAGTCTAGATCT-CT----TTTCT--GT-CATCGTCCAGGTGATTGC-CCCTTCTCTTGTTCTTT-AACACTTTT-GTTCATGATCCA-GTCAATGCAGAAGGTAAAAAGTAGAAGGGACTAAGGAGGCAGCCTTGT-TTCACCCCAGTCATTCAATTCAA-TGCTTCGGTCAAGCATTG---GTCCACATATAACTTGAGCACTGAAGTTCCACATAGAGC-ATTCTGATGATGGCCAGTGAGTTTGTCTGGAATTCCATAGTTAGCTGAGTATTCTTCCATAGTGCTGGTCAGGA-TTTAACAACTATTC-AAAACCTTCGTAAAAGTCTTATG-AGTTGATGTAGAACTG-AGCAATTTCCATTCG-TTGCTCTGCTTCGATTATTTGTCCGGATGGTAAATATCTGGTCAGCACACG
gi|4 : T-GT--T-------------------------TCCGCTTCG-AT-TTATCCTGCTGACTGAC--ATATGAAT-C-TGCTG-TGACTTTGC-TGGTAACTGTCTCAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGAGtc
gi|5 : tttttgttgttaggCTCTG-CTCCATTATTTATCT-GAGGGTAAAGATTTGGTCGTTACATGATCTTCCCCTCCGGAA-TCCCG-C-TTGTTCCTTTCTG-A----GC--TTAGGG--------------------TCTATTTGGTCTCTAATCTTGTTAAGT-----AT--G-AT-CTTGCTCAGCACTTTACTTGAT-ACTGA--CAGG-AGCATTAT-TCCTCTCCAGTTGT--TGGGG--TCTGT-GAGATTTCCCCTTTT-TGGA-AGTTTTACTAG-GAGGTCAGTTT------TCCAG---GGCTCTGGTGTC---AATTCAGTAGTCCAGATGTTC-TGCAGGATGTTT-GTGAGG-ACTTGtgtgttcgaagttcctctgcttttcaaaagttcgcatctattgatctatcccgcagctttcccattcttagagcttacaatgatttttgacttcgctgatgtcagatggttctgtgttaaaattgatctcaagcttgtttcacagctagtgtataactgcttctgtttctgggtcgtctatgttgcagacttgttcaaaatgatcttctcagcatttcaaaacctcatcttcttttgaaggtgtacctcgctgatcctttgataggtacactcgtttgtgtggaatttccgctgcaacgtcctcgtcaagcggtatagggattgcatgttctgttttgaagcggctgtttctgcgtcctttttgctaactctctattatatgtctttctgtctgctttagtctctattcgcctcttatctagatctctgtactctttgcccagtttttcctcactctctctggtttcggtttaagatgctcttttcctttttcctttcgtttctcaaccttctgctaggtttatctgaaaatcctcttcatcctgtttcattcttgacctagaatttgttttccagtctccaaacagtgccttgttaaaaacttccatatccatatctccttttcatatgcatggatgaaaatcgattgtgaatctttttagttggaaagctcgttaatttgtgtttttgcattttggttgatagcgagagtggtggtggccttgaatctgttctcattggcctttacggggttttaacttcagttttgccgcaccttgtttgccacaacatccaactatgattctactccttgttcctgttcattgaattaacataatcaatttggtttctgtttaccgtctggagaattattgttgttttgtgaagcccccatgcataaagatggttctcgcccaacacaagtttgtccctgggtcagacc
gi|6 : TTACTTAATCCTCATCGTGCTGGTTTGCACATAAGGCTGTC-ACCAGAGA-CTTCCAAT--GAT--GTCT------T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCAGCC---TCTGT--TCTTCATCTCCTTCTCGGTGGAT---CT---TCTTCAAGTCTCTTTTGGCCTGCCTCTCT--TCCTCTTGCCTGGTGGTGTCC-ATCGCAC-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAGCATGTCCTATCCATTTACATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-ATTTTGTGGCCAGAATA-------TT-CACAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAGTT-GGTTTATG----ATGGTATTTGTGGTCTTCCATT--ACTCTGCCCCATACAGTAATAC--CCCAAGGACATTACTTTT--GAAGATCTT-TA-T-TTGGTG-CTG----GTTTGG-ATCTCGGGGGATTTCCAAATGTTCTTCAGCATAGCAA---------ATG-CCCCTCTTGCTTTTT-GTA-TTCTGGCTTGTACATC-TTTTAC-AGAGTT-GCCGTCAGCGGTG-ATC-TTGCTT-CCGAGGTACACAAATTCACTCACTTCC-TCGA-TGTCGACCGTG-----TTCAGGATGACTGTCTCTTCATTCTT-GGGGTTGA-----CTTT--CGT---GATCATAGTTTTA-TTGGTGTTGATCTTTAACCCAA-T-TTGTTT-GACTGTG-TTA-TT-CA-TATCTATCGTTTTTTAAAAGTTCTTGGAT-GTCTCT-GTGG-----CGAT-GAG-ATAGTAAGGCAAT-AT-CATCCGCAAAGTCTAGA-CTT--------------T-CATCGTCCAGGTGAT-GC-CCCTTCTCTTGTTCTgtgggtgactgtttcctcagccttgagcatatcggcatgaatttggtccatccctagagattagctgtttttcaaagacttgatagctgtttagacttcctcaagtgatggttggttggtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactttttcaaaatgttctttccagcacttcaattcttcttcaaggctatctgtgagtgtaccatttttcttgcgtattggtgtatttggcggagaactgtaacccccactaagagtcttggtaatttggtacagggttttcatgtcttgttttgctgctgcgagttccgcttctgttgcaagcttgtcgatgtaatttttcttgtctgttcttgcacttcgctttacatttttgtctttttgtaagtatttgcttttcaattgctcttttatgcggtttgatttagttgacagcattttcttcttggtttcttttctttcgtctatcttaccccatgtctcttttgatatccattcctcgtttttcctcttttaaagtattttttccagcttttagcagtgtattgtta
gi|7 : ATATATAATACATT----AAAATATCAGCCTT-----TAACTTGT---AGTTT---AT-TTACTTA---AATCCTCATTGTGCTGGATTGCACATAGGGCCGTT-ACCAGAGA-CTTCCAAT--GATATGTCTGTC---TTG-GGACCAATGCT--GTATT-GTC-CCC-A-TGTCCATCC---GTTGT--CCTTCATCTCCTTCTCGGTGAATTTTCT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTGGTGATGTCC-ATCGCAT-AGCA-A---------CCCTTGGGGTG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATATCCTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-AT-T-C--TCTGGTAT--AGTTCTTTGTTCGAGAT-TGTTTGTGGCCAGAATACAAAATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAGTT-GGTTTATG----GTGGTAGTTGTGGTCTTCAATA--ACTCTGCCTCATACAATAATAC--CCCGAAGAAATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTGACCAGTTCTG-GTCTTGGCAAATTTCGACATGTTCTTCAACATAGTAA---------ATG-CTCCTCTTGCTTTTT-GCA-TTCTGATTTGAACATT-TTTT-CAAGAGTT-GCCATCAGCGGTG-ATT-TTGCTT-CCAGGGTACACAAATTCACTCACTTCC-TCAA-TGTCTACCGTG-----TTCAGGGTGACTGTCTTTTCAGCCTTT-GGGTTGA-----CTTT--CAT---GATGTTAGTTTTATTTGGTGTTGATCTTTAAACCAACT-T-GTTT-GGCTGTG-----------TATCTACTGTTTT------GT-
gi|9 : GAATGTCTCT-GTGA-----CTAT-GAG-ATAGTAAG-TAAT-ATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGT-CATCGTCCAGGTGAG-GTGCCCTTTTCTTGTTCTTT-A-CGCTTTTTGTTCATCATCCA-GTCAATGCAG-----------------------AGGA--CA----TGTGTTCACTCCAGTC-TTCAAT-CAAATGCTTCGGTCAAGC-TTGTTTGTCCACATATAACTTGAGCAATGAAG-TCCATATAGAGTTATTTTGATGGTGG-CAATTAGCTTGTCTGGAATGCCATAGTGA-TTGAGTA-TCTTACATAGTGCTGGTC--GGTTTT-AC-ACTATGCGAAAGCCTTGGTAAAAGTC-TATGAAGTTGATGTAG-ACTGTTAGAA-TTCCACTCGTTTGCTCTG-TTCAATGTAGTGTCT-GATAGTAAATATCTGGTCAGCAC--------CTCTTCTTAA-----AG-CGTTGCTCTGCACTC-AGTT-GTGGTCA--ATGTTTTTGTTGTTAGGTGTTTCCGCTTCG-AT-TTATCCTGCTGACTGACATAT--GAAT--CTGCTG-TGACTTTGC-TGGTAACTGTCTCAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTGAAGACTTGTTCAAAGTGATCTATCCAGCATTTCAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATACTTCGTCAAGCGATATAAGGATTACATGTCTTGTTTTGAAGCGGCTGTTTCTGCTTCCTCTGCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTTGTTCAGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTCTCCACCTTCTGCCAAGTTTCGTCTGAAATCCACTCCTCCTTTTTACATTTCTTTGGCCCTAGAATTTGTTTTCCAGTCTCCAACAGTACTTTGTTAAAATCTTCCATATCCACATCTTCTTTTCCATCTGCAAGGACTGAAAATCGGTTGCGAACTTCTGGTTGGAAAGCTCGTTGAACCTGTGGGTTTTTCAGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTTAGTTTTGCCCAGCACTAGGGATTGATCGCTACCAATGTCTGCACCTTGTTTTGNNNNAGTAGACTACTTCTCAATCTCCTGTTGATGATTACATGATCTATTTGTGTCCTGGTTCTGTCCTT
Unaligned ( gi|11 ): TTACTCTCTCTTATTTTGTTGATAGGATGCTCTTTTTCTTCCACCTTCTGCCAGGTTTTATCAAAAATCCACACCTCCTTCTTACGTTTCTTTGACCCTAGAATTTGTGTTCCAGTCTCCAACAGTACCTTGTTTTAAAACTTCCATATCCATATCTTCGTTTTCATCTGCCAGGACTGAAAATCGGTTGCGAACTTCTAGTTGGAAAGTTCGTTTAACTTGTGGGTTTTTCAGTTTGTTGATGTCAATGGGTGGTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTCAGTTTTGCCAGCACTAGGGAGTGATCGCTACCAATGTCTGCACCTTGTTTTACCACTACATCCAATAGACTACTTCTCCATCTCCTGTTGATGATTACAAGATGAATTTGGTTTCTGGTTTTACCGTCTGGAAAATTCCATGTTGTTTTGTGGATGTCCTTGTGCATAAAGATCGTTCCGCCAATCAATAAGTTGATTTCCTGACAGAATGTGCTCAGTCGGTCTCCATTGTCATTACTACTTGCTGTCCCATTATGTTTTCT
Unaligned ( gi|13 ): ATCATCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATGGGTACGTTCGTTGTGTGGAATTTCCCTGCTATAGTCTTCGTCAAGCGTTATAAAGATTTCATATCTTGTTTAGAAGCGGCTATTTCTGCTTCCTCTGCTAACTCATGCATGTATGCATGCATGTCTTTCTGTCTGCTTTAGTTCCCTTCTTCACCTGTTAATCTAGATCTCTATACTCGTTGCCCAGCTTTTCCTTTACTCTCTCTCTCTCTCTCTCTTTTTTATTTATATTTTTTTC
Unaligned ( gi|18 ): TCCATATCTTCTTTTCCATCTGCAAGGACTGGAAATCGGTTGCGTACTTCTAGTTGGAAAGCTCGTTGAACCTGCAGATTTTTGTTGATGTCAAGGGGTGGTGGTCTT
Alignments
lowQualScore : 2222 11 22222 222 333333 111 222 111 111 222 111 11 333333333 2222222 1111 11 2222 222222222 11111111 1 222222222 1 22222 11 111 1 222222222222 222222 1 22222 2 2 1 1 11 33333333 11 22 111 1 1 222 1 1 1 1 1 11 1 1 1 1 11 1 1 1 11 11111111111 6666666666666666666666666666 2222 1111111 2222 111 1 111 1 11 11 111 3333333 11 1 1111 2 1
lowQualScore : 1 1 1 4444 88 66666 6 333 111111 7 2 3 1 3 5 66 444 77 555 6 6 1 3 99 7 6 6 6 1 000 1 77 3 5 33 000 000 000 0 77 777 1 11 8 222222222 8 1 8 2 44 3 99 6 99 99 6 6 6 99 99 6 1111111 6 2 6 6 77 6 6 4444 5 99 99 6 11 6 6 6 0000 99 1 1 666666666 6 1 6 6 1 2 88888888 6 2 6 6 6 0 1 8 0 2 111111111 0 55 0 00000 11 444 0 8 1 6 8 8 333333333333 333333 8 0 88 88888 0 8 3 3 8 8 3 99 6 8 8 0 0 0 3 00 00000000 00 00 777 3 7 7 7 3 333 3 3 3 1 3 3 88 7 3 3 1 7 3 3 0 33 0 0 0 8 8 11 8 11 8 8 0 55555555555 2222222222222222222222222222 3 4444 6666666 1111 666 0 8 0 666 3 0 8 11 11 444 8 3 1 6666666 88 11 0 5555 1 0 8 6 0
lowQualScore : . . . .... .. ..... . ... ...... . . . . . . .. ... .. ... . . . . .. . . . . . ... . .. . . .. ... ... ... . .. ... . .. . ......... . . . . .. . .. . .. .. . . . .. .. . ....... . . . . .. . . .... . .. .. . .. . . . .... .. . . ......... . . . . . . ........ . . . . . . . . . . ......... . .. . ..... .. ... . . . . . . ............ ...... . . .. ..... . . . . . . . .. . . . . . . . .. ........ .. .. ... . . . . . ... . . . . . . .. . . . . . . . . .. . . . . . .. . .. . . . ........... ............................ . .... ....... .... ... . . . ... . . . .. .. ... . . . ....... .. .. . .... . . . . .
lowQualScore : 0 0 0 5555 00 55555 7 333 777777 3 5 5 0 0 7 77 444 99 000 7 7 0 7 22 3 7 7 7 0 000 7 99 0 0 44 000 000 000 1 99 888 0 88 0 000000000 0 4 0 5 00 2 22 7 22 22 7 7 7 22 22 7 7777777 7 2 7 7 77 7 7 2222 7 22 22 3 00 7 7 7 8888 22 0 0 777777777 7 0 7 7 7 2 55555555 7 2 7 7 7 8 4 0 0 5 000000000 6 88 0 00000 00 000 8 0 0 0 0 0 888888888888 000000 0 6 88 00000 4 0 2 2 0 0 2 22 7 0 0 0 0 0 2 22 77777777 33 00 777 3 3 3 3 3 333 3 3 3 0 3 3 33 3 3 3 0 3 3 2 0 22 0 0 0 0 0 88 0 88 0 0 8 44444444444 2222222222222222222222222222 7 7777 2222222 8888 222 6 0 8 888 2 6 0 00 00 000 0 8 0 2222222 88 00 0 0000 4 4 0 4 6
consensus : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTT-C-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCNA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTG-TTA-TT--CA-TATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTACGC-AGTT----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT-CCTGCTGATGACTTTGC-TGGTAACTGNCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
Reference ( family-1222 ) : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTT-C-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCGA-----CCGCGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTG-TTA-TT--CA-TATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTACGC-AGTT----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT-CCTGCTGATGACTTTGC-TGGTAACTGNCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
gi|1 : ATATCTCATAGATTTTATAAAATATC--TTTTCAAGATAACTT-TGAAAGTTTGATATATTACTTACTAAATGTTCTTCGTGTTGGGTTGCACAAAAGGTCGTC-ACCAGAGT-CTTCCAAT--AAT--GCCTGTCC--T-G-GGACCAATACT--GTATTTGTC-CCA-A-TGTCCAACC---TCTGT--CCTTCATCTCCTTATCGGTGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGT--CCATCGCAT-AGCA-A---------CCCTTGGGATG-GAATCAGGGTGCATTCTGC-AAACATGTCCTATCCATTT--------------GTATTGCCT--GAGATATAG-GCACGTTGTAAGTTG-AT-T-C--TATGGTAT--AGTTCTTTGTCTGAGAT-TTTTTGTGGCCAG-------AATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTCGTTTATG----ATGGTATTTGTGATCTTCCATG--ACTCTGCCCCATACAGTAATAC--TCCAAGGACATTGCTTTT--GGAGATCTT-TAAT-TTGGGG-CTG----GTTC-TGATCTTGGCGGATTTCCATATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATCATTTT-C-AGAG-CTGCCATCAGCAGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCATAT-TCTCA-ATGTCTA------------CAGGATGACTGTCTCTTCAGCCTTTGGGGTTGA-----CCTTGGCA---TGACCTTAG-TTTA-TTGGTGCTTGTTTTTAAA-CAA-T-T-ATTT-GCTGTGTTTATTT--CATTATCTACT-TTTT------GT-CTTGGATTGTCTCTGGTGGC----CGATTGACTATA-TAAGGCAA-TAT-CATCTGCAAAGTCCAGATCTTCTAGCATTTCT--GTGCATCGTCCATTTGA-TGC-CCCTTCTCTTGTTCTTTCATGCTTTC-GTTCATGATCCATGTCAATGCAGAAGGT-GAAAGT---AGGGCACTAAATAGACA-CCTTGTT-TTCACTCCAGTC-TTCAATTCAAATGCTTCGG-CTAGC-TTG---GTCCACATATACCTTGAGCACTAAAG-TACACATAGAGC-ATTCTGATGATGG-CAATAAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCGTCCACAATGCTGGTC--GG-TTTAC-ACTAT-CGAATGCCTTAGT-AAAGTC-TATGAAATTGATGTAA-ACTG-TTG-AA-TTCCACTCG-TTATTCTG-TTCAAT-TTTAAGTCT-GATGGTAAATATCTGGTCAACACATGATCTTCCCTTTCTAAG-TCCAG-C-TTGCTCTTTACAC-A-------GT--TCA---------------------T-CCGCTTTGTGTGTTATCCTGTTGA--GA---AT---AAT-CATGCTGATGACGTTGC-TGGTAACTGAC---AGCAGTATGAT-CCTTCGCCAGTTGT--TACAA--TCTGTCAAG---TCTCCTTTCGTAGACAACTTTA-AAACCAATCCCTTTC------TCCAG-AAGG--ATGGTAT-T--TTTTCTGTGAAGCAAATTTTC-TGAAGTATCTTG-GTAGGG--TTTGAGG
gi|10 : -----CTGTATTCAGGATGACTGTCTCTTCATTCTTTGGG-TTGA-----CGTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAACCCAA-TCT-GTTTGGCTGTG-CTA-TT--AG-TATCTACTGTTTT------GT-CTTGGAT-GTCTCT-GTGG-----CGAT-GA-GATAATAAGACAA-TAT-CATCCGCAAAGTCTAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACACTTTT-GGTCATGATCCA-GTCAATGCAGAAGGT-GAAA
gi|10 : ATGAAAATGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCG-GATGGTAAATATCTGGTCAGCACACGACTTTCCCTATCTAAA-TCCAG-C-TTGCTCTTTACGT-AGTT----GT--TCA---------------------C-CTGCTTAG---GTAAT--TGTTGATTGGC--agnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaaaatgatgtagactgtagaattccactcgttgctctgttcaattatttgtcggatggtaaatatctggtcagcacacgactttccctatctaaatccagcttgctctttacgtagttgttcacctgcttaggtaattgttgattggctgttttacgtcatttcaattaat
gi|12 : ctgtattcaggatgactgtctcttcattctttgggttgacgttcatgatcttagttttattggtgttgatctttaacccaatctgtttggctgtgctattagtatctactgttttgtcttggatgtctctgtggcgatgagataataagacaatatcatccgcaaagtctagatcttctagcatttctgtcatcgtccaggtgatgccccttctcttgttctttacacttttggtcatgatccagtcaatgcagaaggtgaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnC---TTTGT--CCTTTATATTTCTCTCCACTGTT---CT---CC---ATGTCCCCCTTGGTCTTCC-CTTTGCCCCTCTTTCCTT-GAGGTGTCTGTCGGA---GCACA---------CATCTGGTAAGTGATTCCAAGAGCCTTCAGC-AGACATGACCCAGCCATCTCCATTT------TTGTA---CC------ATGAAG-ATATA--TT--GTTGTGTCT-CCATCCATCAT--TGTT-TTCATTTGAAAT-GATGTTTAGTCAG-------AAGGTT-TTGAGGA-TCCATCTTAGGC-AT--ATGTTATGGATGACCTCCA-----GCCTATGCTCTATGGTTCTAGTTGTTTTCCACAATATTCAGATCTGTATAGAAGAAC--ACTGAGAATGCTGCTTCT--GAAAAT-TT-TGATCTTGGTA--TGT---ATGC-TGATGTAAAAGTGTTTCAAGATTAACTTGAGTAGAGCAAAGACTTGAGAT-GC----CTTGC-T-----T-ATTCTTGCCTGC---------------AG-TTGCCATCTGTAGTC-ATC-GTAC-TGCCCAAATAAACAAGTT---GCACAT-CCTCtgttttacgtcatttcaattaat
gi|14 : tGTCCTATCCATTTCCATTTCTTCTTTTGCATTGCCT--GAGATAGAG-GCATG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAA-------AATATT-TGCAGAA-TCTGCCGGAGAC-AT-TGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCAAG--ACTCTGCCCCATACAATGATAC--TCCAAGGTCATTGCT
gi|15 : GGTAGCACATAAGGCC-TCGACTAGAGC-CCGCCATT--CAT--GTTGGTTGATT-G-AAAC--ACACT--CCAGATGCC-CCCCA-TGCCCAACC---TCTCT--CCTTCATCTCCT-------------------CC---AAGTTTCCTTGGGGCGGCTTCGCT--TTCT-TCGCCCATCTGGAGTCCAT
gi|16 : CACATAAGGCCTTC-AC-AGAGGGTTTTCAAC--TCA--GTCTGCC---T-G-CTGCTAAT-CTTAGTATCTGAC-CCC-A-AGTCCATCCAAAT---T--CTTTCATTTCTTTCTGAACTGAT---CTCCTCC---ATGTTTCTTTAAGTCGTCCCCTCT--Tt
gi|17 : AGATCTT-TAAT-TTGGTGGCTG----GTTT-GGATCTTGCTAGATTTCCAAATGTTATTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC----------------------ACGGTGAATC-TTAC-TTCCGAG
gi|19 : TCGTGTTGGAGTGCACATAAGGCCATC-ACCAGCTC-TCTCCAAC---AC--GTC
gi|2 : ctACGATCTTTCCTTTCTAAAATCCAGGC-TTGC-CTTTGCGTTATTT----GTG-TCA---------------------TACCGCTTTGTCTGTTATCCTGT--GCAGAA--AT---AATGCCTACTGATGA-TTTGC-TGGTAACTTGAACAGTTAGCATGATTCCCTCGCCAGTTGTGGTACAAATCCTGTCAGG---TCTCCTTTC-TGGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGG--ATGGTATTTTCTCTTTTGTGGACCAAATTTTC-TGAAGTATCTTGCGTAA-GTATTCGAGGatcaataaactgtat
gi|20 : TTGT---AGATT---GG-CT-CTCTCTTAATCCTTATCGTGCTGGTTTGCACATAAGGCCGTC-ACCtgtttgaagttccttctgcttttcaaaagttctgcattttttgtctattcctgcagctttcccattctttagaggcagacaatgcctttttgacttcactgatgtcaggtggttctgtgttgataatcaagcttgttttcagtggtgttataactgcctctgtttctggtcgtcatgttgaagacttgtttcaaatgtgatctatttccagcatttacaaaatctcttcttttttgacaggatgttaccttgctgattctttgaataggtatgttcgttgcgtggaatttccccgctaaaaagatcttcgtcaaagcggtagtaggatttgcatgtctttgtttttgaaggagcggctgttttctgcttcctcttgctaagctctcctaatatatgcctttcgatctgctttagctcccatctcacctctttatctagatctcctacttttttgccccagcttttcctttactctctctgatttcgtgataggatgctcttttctttccttttgttttcttccgcctttctgcaggtttcgtctgaacatccactcctcctttttttacgtttctttggccttaaaatttgttttccaagtctccaaacagtactttatgtaaaatcttccatatccacatcttgttttccatctgcaaggactgaaaatcggtttgcaaaccttctagttagaaagttcgttaacctgtgggtttttcagtttatgttgatgtcaagggtggcggtcttttggtcttttctcttgctttacggagttttaaactttagttttgccagcactagggattgatcgctaacaattgtctgcaccttgttttgcactacatccagtagactacttctccaatctcctgttgatgaattacatgatctatttggtttctgggtttttaccgtctggaagaaattccaatgtttgttttgtggatatctctatgcataaaagatggtccaccaacaccaagttgttttcctgacagaaacgtgctgccagtcggtctccatttgtcaattacttattctcccattcctttgctgtcccattaatgtttcttt
gi|21 : aaAAAGTCCAGATCTTCTAGCATTTCT--GT-CAT
gi|3 : -CTTCCAACATGAT--ATCTGTCA--T-GCGGACCAGTGCT--GTATT-GTCGCCC-AATGTCCAGCC---TCTGTTTCCTTCAT-TCCT-CTCGGTGGAT---CTTCTCC---AAGTCACTTTTGGCCTGC-TCTCT--TCCTCTTGCC-A-GTGGTGTC-ATCGCATTAGCA-AAAAAAAACCCCCTTGGGATG-GAATCAGG-TGCATCCTGCTAAACATGTTCTATCCATTTCCATTTCTTCTTT-GTATCGCCTTAAAGATAGAGCGCACG--GT--GTTG-GT-TTC--TCTGGTATTTAGT-CTTTGTTTGAGATCTTTTTGTGGCCAG-------AATATTTCGTAGAAATCCACCGGAGACCATTCGTGTC-TGGAAGACATCTAGTTTGGTTTATG----ATGGTA-TTGTGGTCTTCCATG--ACTCTGCCCAATACAGTAATACTTCCC--AGACATTGCTTTTTGAAAGATCTTGTAAT-TTGTTG-CTG----GTTTGGGATCTTGGCGGATTTCCATATGTTCTTCAGCACAGCAT---------ATGGCCCCTCTTGCTTTTTTGTAATTCTGGC-TGTACGTC-TTTT-C-AGAGTTTGCCGTCAGAGGTG-ATCGTTACTTTCCGAGAAACAC-AATTCACTCACTTCCCTCGAATGTCGGACCCCCCGTGTTCATGATGCAAGTCCTTTCATTCTTTTGG--TGAAACTTTTTT--CATTTTGATCTTAGTTATA-TTGGTGTTGATCTTTACGCCAATT-T-TTTTGGCTGTG-TTG-TTTCCA-TATCTACTGTTTT------GT-CTTGGATTGTCTC--GTGGGGGGACGATTGA-GATAGTTAGGCAATTAT-CATCCGCAAAGTCTAGATC-TCT----TTTCT--GT-CATCGTCCAGGTGATTGC-CCCTTCTCTTGTTCTTTAACACTTTT-GTTCATGATCCA-GTCAATGCAGAAGGTAAAAAGTAGAAGGG-ACTAAGGAGGCAGCCTTG-T-TTCACCCCAGTCATTCAATTC-AATGCTTCGGTCAAGCATTG---GTCCACATATAACTTGAGCACTGAAGTTCCACATAGAGC-ATTCTGATGATGGCCAGTGAGTTTGTCTGGAATTCCATAGTTAGCTGAGTATTCTTCCATAGTGCTGGTCAGGATTTAACAACTAT-TCAAAACCTTCGTAAAAGTCTTATG-AGTTGATGTAGAACTG--AGCAATTTCCATTCG-TTGCTCTGCTTCGAT-TATTTGTCCGGATGGTAAATATCTGGTCAGCACACG
gi|4 : -AGGT----GT--T-----------------------T-CCGCTTCG-AT-TTATCCTGCTGACTGAC--ATATGAAT-C-TGCTG-TGACTTTGC-TGGTAACTGTCTCAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGAGtc
gi|5 : tttttgttgttCTCTG-CTCCAT-TATTTATCT-GAGGGTAAAGATTTGGTCGTTACATGATCTTCCCCTCCGGAA-TCCCG-C-TTGTTCCTTTCTG-AGCTTAGGGT--CTA---------------------T-----TTGGTCTCTAATCTTGTTAAGT-----AT--G-AT-CTTGCTCAGCACTTTACTTGAT-ACTGA--CAGG-AGCATTAT-TCCTCTCCAGTTGT--TGGGG--TCTGT-GAGATTTCCCCTTTT-T-GGAAGTTTTACTAG-GAGGTCAGTTT------TCCAG---GGCTCTGGTGTC---AATTCAGTAGTCCAGATGTTC-TGCAGGATGTTT-GTGAGG-ACTTGtgtgttcgaagttcctctgcttttcaaaagttcgcatctattgatctatcccgcagctttcccattcttagagcttacaatgatttttgacttcgctgatgtcagatggttctgtgttaaaattgatctcaagcttgtttcacagctagtgtataactgcttctgtttctgggtcgtctatgttgcagacttgttcaaaatgatcttctcagcatttcaaaacctcatcttcttttgaaggtgtacctcgctgatcctttgataggtacactcgtttgtgtggaatttccgctgcaacgtcctcgtcaagcggtatagggattgcatgttctgttttgaagcggctgtttctgcgtcctttttgctaactctctattatatgtctttctgtctgctttagtctctattcgcctcttatctagatctctgtactctttgcccagtttttcctcactctctctggtttcggtttaagatgctcttttcctttttcctttcgtttctcaaccttctgctaggtttatctgaaaatcctcttcatcctgtttcattcttgacctagaatttgttttccagtctccaaacagtgccttgttaaaaacttccatatccatatctccttttcatatgcatggatgaaaatcgattgtgaatctttttagttggaaagctcgttaatttgtgtttttgcattttggttgatagcgagagtggtggtggccttgaatctgttctcattggcctttacggggttttaacttcagttttgccgcaccttgtttgccacaacatccaactatgattctactccttgttcctgttcattgaattaacataatcaatttggtttctgtttaccgtctggagaattattgttgttttgtgaagcccccatgcataaagatggttctcgcccaacacaagtttgtccctgggtcagacc
gi|6 : TTACTTAATCCTCATCGTGCTGGTTTGCACATAAGGCTGTC-ACCAGAGA-CTTCCAAT--GAT--GTCT------T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCAGCC---TCTGT--TCTTCATCTCCTTCTCGGTGGAT---CT---TCTTCAAGTCTCTTTTGGCCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAC-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAGCATGTCCTATCCATTTACATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-ATTTTGTGGCCAG-------AATATT-CACAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATT--ACTCTGCCCCATACAGTAATAC--CCCAAGGACATTACTTTT--GAAGATCTT-TA-T-TTGGTG-CTG----GTTT-GGATCTCGGGGGATTTCCAAATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATC-TTTTAC-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCGA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTT-GGGGTTGA-----CTTT--CG---TGATCATAGTTTTA-TTGGTGTTGATCTTTAACCCAA-T-TTGTTTGACTGTG-TTA-TT--CA-TATCTATCGTTTTTTAAAAGTTCTTGGAT-GTCTCT-GTGG-----CGAT-GA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCTAGA-CTT--------------T-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTgtgggtgactgtttcctcagccttgagcatatcggcatgaatttggtccatccctagagattagctgtttttcaaagacttgatagctgtttagacttcctcaagtgatggttggttggtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactttttcaaaatgttctttccagcacttcaattcttcttcaaggctatctgtgagtgtaccatttttcttgcgtattggtgtatttggcggagaactgtaacccccactaagagtcttggtaatttggtacagggttttcatgtcttgttttgctgctgcgagttccgcttctgttgcaagcttgtcgatgtaatttttcttgtctgttcttgcacttcgctttacatttttgtctttttgtaagtatttgcttttcaattgctcttttatgcggtttgatttagttgacagcattttcttcttggtttcttttctttcgtctatcttaccccatgtctcttttgatatccattcctcgtttttcctcttttaaagtattttttccagcttttagcagtgtattgtta
gi|7 : ATATATAATACATT----AAAATATCAGCCTT-----TAACTTGT---AGTTT---AT-TTACTTA---AATCCTCATTGTGCTGGATTGCACATAGGGCCGTT-ACCAGAGA-CTTCCAAT--GATATGTCTGTC---TTG-GGACCAATGCT--GTATT-GTC-CCC-A-TGTCCATCC---GTTGT--CCTTCATCTCCTTCTCGGTGAATTTTCT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGATGTCCATCGCAT-AGCA-A---------CCCTTGGGGTG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATATCCTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-AT-T-C--TCTGGTAT--AGTTCTTTGTTCGAGAT-TGTTTGTGGCCAGAATACAAAATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----GTGGTAGTTGTGGTCTTCAATA--ACTCTGCCTCATACAATAATAC--CCCGAAGAAATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTGACCAGTTC-TGGTCTTGGCAAATTTCGACATGTTCTTCAACATAGTAA---------AT-GCTCCTCTTGC-TTTTTGC-ATTCTGATTTGAACATT-TTTT-CAAGAG-TTGCCATCAGCGGTG-ATT-TTGC-TTCCAGGGTACACAAATTCACTCACTT-CCTCA-ATGTCTA-----CCGTGTTCAGGGTGACTGTCTTTTCAGCCTTT-GGGTTGA-----CTTT--CA---TGATGTTAGTTTTATTTGGTGTTGATCTTTAAACCAACT-T-GTTTGGCTGTG------------TATCTACTGTTTT------GT-
gi|9 : GAATGTCTCT-GTGA-----CTAT-GA-GATAGTAAG-TAA-TATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGT-CATCGTCCAGGTGA-GGTGCCCTTTTCTTGTTCTTT-ACGCTTTTTGTTCATCATCCA-GTCAATGCAGA------------------------GGA--CA----TG-TGTTCACTCCAGTC-TTCAAT-CAAATGCTTCGGTCAAGC-TTGTTTGTCCACATATAACTTGAGCAATGAAG-TCCATATAGAGTTATTTTGATGGTGG-CAATTAGCTTGTCTGGAATGCCATAGTGA-TTGAGTA-TCTTACATAGTGCTGGTC--GGTTTTAC-ACTATGCGAAAGCCTTGGTAAAAGTC-TATGAAGTTGATGTAG-ACTGTTAG-AA-TTCCACTCGTTTGCTCTG-TTCAATGTA-GTGTCT-GATAGTAAATATCTGGTCAGCAC--------CTCTTCTTAA-----AG-CGTTGCTCTGCACTC-AGTT----GTGGTCAATGTTTTTGTTGTTAGGTGTTT-CCGCTTCG-AT-TTATCCTGCTGACTGACATAT--GAAT--CTGCTG-TGACTTTGC-TGGTAACTGTCTCAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTGAAGACTTGTTCAAAGTGATCTATCCAGCATTTCAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATACTTCGTCAAGCGATATAAGGATTACATGTCTTGTTTTGAAGCGGCTGTTTCTGCTTCCTCTGCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTTGTTCAGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTCTCCACCTTCTGCCAAGTTTCGTCTGAAATCCACTCCTCCTTTTTACATTTCTTTGGCCCTAGAATTTGTTTTCCAGTCTCCAACAGTACTTTGTTAAAATCTTCCATATCCACATCTTCTTTTCCATCTGCAAGGACTGAAAATCGGTTGCGAACTTCTGGTTGGAAAGCTCGTTGAACCTGTGGGTTTTTCAGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTTAGTTTTGCCCAGCACTAGGGATTGATCGCTACCAATGTCTGCACCTTGTTTTGNNNNAGTAGACTACTTCTCAATCTCCTGTTGATGATTACATGATCTATTTGTGTCCTGGTTCTGTCCTT
Unaligned ( gi|11 ): TTACTCTCTCTTATTTTGTTGATAGGATGCTCTTTTTCTTCCACCTTCTGCCAGGTTTTATCAAAAATCCACACCTCCTTCTTACGTTTCTTTGACCCTAGAATTTGTGTTCCAGTCTCCAACAGTACCTTGTTTTAAAACTTCCATATCCATATCTTCGTTTTCATCTGCCAGGACTGAAAATCGGTTGCGAACTTCTAGTTGGAAAGTTCGTTTAACTTGTGGGTTTTTCAGTTTGTTGATGTCAATGGGTGGTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTCAGTTTTGCCAGCACTAGGGAGTGATCGCTACCAATGTCTGCACCTTGTTTTACCACTACATCCAATAGACTACTTCTCCATCTCCTGTTGATGATTACAAGATGAATTTGGTTTCTGGTTTTACCGTCTGGAAAATTCCATGTTGTTTTGTGGATGTCCTTGTGCATAAAGATCGTTCCGCCAATCAATAAGTTGATTTCCTGACAGAATGTGCTCAGTCGGTCTCCATTGTCATTACTACTTGCTGTCCCATTATGTTTTCT
Unaligned ( gi|13 ): ATCATCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATGGGTACGTTCGTTGTGTGGAATTTCCCTGCTATAGTCTTCGTCAAGCGTTATAAAGATTTCATATCTTGTTTAGAAGCGGCTATTTCTGCTTCCTCTGCTAACTCATGCATGTATGCATGCATGTCTTTCTGTCTGCTTTAGTTCCCTTCTTCACCTGTTAATCTAGATCTCTATACTCGTTGCCCAGCTTTTCCTTTACTCTCTCTCTCTCTCTCTCTTTTTTATTTATATTTTTTTC
Unaligned ( gi|18 ): TCCATATCTTCTTTTCCATCTGCAAGGACTGGAAATCGGTTGCGTACTTCTAGTTGGAAAGCTCGTTGAACCTGCAGATTTTTGTTGATGTCAAGGGGTGGTGGTCTT
Alignments
lowQualScore : 2222 11 22222 222 333333 111 222 111 111 222 111 11 333333333 2222222 1111 11 2222 222222222 11111111 1 22222 1 22222 11 111 1 222222222222 222222 1 22222 2 2 1 1 11 33333333 11 22 111 1 1 222 1 1 1 1 1 11 1 1 1 1 11 1 1 1 11 11111111111 6666666666666666666666666666 2222 1111111 2222 111 1 111 1 11 11 111 3333333 11 1 1111 2 1
lowQualScore : 1 1 1 4444 88 66666 6 333 111111 7 2 3 1 3 5 66 444 77 555 6 6 1 3 99 7 6 6 6 1 000 1 77 3 5 33 000 000 000 0 77 777 1 11 8 222222222 8 1 8 2 44 3 99 6 99 99 6 6 6 99 99 6 1111111 6 2 6 6 77 6 6 4444 5 99 99 6 11 6 6 6 0000 99 1 1 666666666 6 1 6 6 1 2 88888888 6 2 6 6 6 0 1 8 0 1 00000 0 55 0 00000 11 444 0 8 1 6 8 8 333333333333 333333 8 0 88 88888 0 8 3 3 8 8 3 99 6 8 8 0 0 0 3 00 00000000 00 00 777 3 7 7 7 3 333 3 3 3 1 3 3 88 7 3 3 1 7 3 3 0 33 0 0 0 8 8 11 8 11 8 8 0 55555555555 2222222222222222222222222222 3 4444 6666666 1111 666 0 8 0 666 3 0 8 11 11 444 8 3 1 6666666 88 11 0 5555 1 0 8 6 0
lowQualScore : . . . .... .. ..... . ... ...... . . . . . . .. ... .. ... . . . . .. . . . . . ... . .. . . .. ... ... ... . .. ... . .. . ......... . . . . .. . .. . .. .. . . . .. .. . ....... . . . . .. . . .... . .. .. . .. . . . .... .. . . ......... . . . . . . ........ . . . . . . . . . . ..... . .. . ..... .. ... . . . . . . ............ ...... . . .. ..... . . . . . . . .. . . . . . . . .. ........ .. .. ... . . . . . ... . . . . . . .. . . . . . . . . .. . . . . . .. . .. . . . ........... ............................ . .... ....... .... ... . . . ... . . . .. .. ... . . . ....... .. .. . .... . . . . .
lowQualScore : 0 0 0 5555 00 55555 7 333 777777 3 5 5 0 0 7 77 444 99 000 7 7 0 7 22 3 7 7 7 0 000 7 99 0 0 44 000 000 000 1 99 888 0 88 0 000000000 0 4 0 5 00 2 22 7 22 22 7 7 7 22 22 7 7777777 7 2 7 7 77 7 7 2222 7 22 22 3 00 7 7 7 8888 22 0 0 777777777 7 0 7 7 7 2 55555555 7 2 7 7 7 8 4 0 0 0 00000 6 88 0 00000 00 000 8 0 0 0 0 0 888888888888 000000 0 6 88 00000 4 0 2 2 0 0 2 22 7 0 0 0 0 0 2 22 77777777 33 00 777 3 3 3 3 3 333 3 3 3 0 3 3 33 3 3 3 0 3 3 2 0 22 0 0 0 0 0 88 0 88 0 0 8 44444444444 2222222222222222222222222222 7 7777 2222222 8888 222 6 0 8 888 2 6 0 00 00 000 0 8 0 2222222 88 00 0 0000 4 4 0 4 6
consensus : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTT-C-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCNA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTG-TTA-TT--CA-TATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTACGC-AGTT----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT-CCTGCTGATGACTTTGC-TGGTAACTGNCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
Reference ( family-1222 ) : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTT-C-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCNA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTG-TTA-TT--CA-TATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTACGC-AGTT----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT-CCTGCTGATGACTTTGC-TGGTAACTGNCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
gi|1 : ATATCTCATAGATTTTATAAAATATC--TTTTCAAGATAACTT-TGAAAGTTTGATATATTACTTACTAAATGTTCTTCGTGTTGGGTTGCACAAAAGGTCGTC-ACCAGAGT-CTTCCAAT--AAT--GCCTGTCC--T-G-GGACCAATACT--GTATTTGTC-CCA-A-TGTCCAACC---TCTGT--CCTTCATCTCCTTATCGGTGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGT--CCATCGCAT-AGCA-A---------CCCTTGGGATG-GAATCAGGGTGCATTCTGC-AAACATGTCCTATCCATTT--------------GTATTGCCT--GAGATATAG-GCACGTTGTAAGTTG-AT-T-C--TATGGTAT--AGTTCTTTGTCTGAGAT-TTTTTGTGGCCAG-------AATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTCGTTTATG----ATGGTATTTGTGATCTTCCATG--ACTCTGCCCCATACAGTAATAC--TCCAAGGACATTGCTTTT--GGAGATCTT-TAAT-TTGGGG-CTG----GTTC-TGATCTTGGCGGATTTCCATATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATCATTTT-C-AGAG-CTGCCATCAGCAGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCATAT-TCTCA-ATGTCTA------------CAGGATGACTGTCTCTTCAGCCTTTGGGGTTGA-----CCTTGGCA---TGACCTTAG-TTTA-TTGGTGCTTGTTTTTAAA-CAA-T-T-ATTT-GCTGTGTTTATTT--CATTATCTACT-TTTT------GT-CTTGGATTGTCTCTGGTGGC----CGATTGACTATA-TAAGGCAA-TAT-CATCTGCAAAGTCCAGATCTTCTAGCATTTCT--GTGCATCGTCCATTTGA-TGC-CCCTTCTCTTGTTCTTTCATGCTTTC-GTTCATGATCCATGTCAATGCAGAAGGT-GAAAGT---AGGGCACTAAATAGACA-CCTTGTT-TTCACTCCAGTC-TTCAATTCAAATGCTTCGG-CTAGC-TTG---GTCCACATATACCTTGAGCACTAAAG-TACACATAGAGC-ATTCTGATGATGG-CAATAAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCGTCCACAATGCTGGTC--GG-TTTAC-ACTAT-CGAATGCCTTAGT-AAAGTC-TATGAAATTGATGTAA-ACTG-TTG-AA-TTCCACTCG-TTATTCTG-TTCAAT-TTTAAGTCT-GATGGTAAATATCTGGTCAACACATGATCTTCCCTTTCTAAG-TCCAG-C-TTGCTCTTTACAC-A-------GT--TCA---------------------T-CCGCTTTGTGTGTTATCCTGTTGA--GA---AT---AAT-CATGCTGATGACGTTGC-TGGTAACTGAC---AGCAGTATGAT-CCTTCGCCAGTTGT--TACAA--TCTGTCAAG---TCTCCTTTCGTAGACAACTTTA-AAACCAATCCCTTTC------TCCAG-AAGG--ATGGTAT-T--TTTTCTGTGAAGCAAATTTTC-TGAAGTATCTTG-GTAGGG--TTTGAGG
gi|10 : -----CTGTATTCAGGATGACTGTCTCTTCATTCTTTGGG-TTGA-----CGTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAACCCAA-TCT-GTTTGGCTGTG-CTA-TT--AG-TATCTACTGTTTT------GT-CTTGGAT-GTCTCT-GTGG-----CGAT-GA-GATAATAAGACAA-TAT-CATCCGCAAAGTCTAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACACTTTT-GGTCATGATCCA-GTCAATGCAGAAGGT-GAAA
gi|10 : ATGAAAATGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCG-GATGGTAAATATCTGGTCAGCACACGACTTTCCCTATCTAAA-TCCAG-C-TTGCTCTTTACGT-AGTT----GT--TCA---------------------C-CTGCTTAG---GTAAT--TGTTGATTGGC--agnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaaaatgatgtagactgtagaattccactcgttgctctgttcaattatttgtcggatggtaaatatctggtcagcacacgactttccctatctaaatccagcttgctctttacgtagttgttcacctgcttaggtaattgttgattggctgttttacgtcatttcaattaat
gi|12 : ctgtattcaggatgactgtctcttcattctttgggttgacgttcatgatcttagttttattggtgttgatctttaacccaatctgtttggctgtgctattagtatctactgttttgtcttggatgtctctgtggcgatgagataataagacaatatcatccgcaaagtctagatcttctagcatttctgtcatcgtccaggtgatgccccttctcttgttctttacacttttggtcatgatccagtcaatgcagaaggtgaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnC---TTTGT--CCTTTATATTTCTCTCCACTGTT---CT---CC---ATGTCCCCCTTGGTCTTCC-CTTTGCCCCTCTTTCCTT-GAGGTGTCTGTCGGA---GCACA---------CATCTGGTAAGTGATTCCAAGAGCCTTCAGC-AGACATGACCCAGCCATCTCCATTT------TTGTA---CC------ATGAAG-ATATA--TT--GTTGTGTCT-CCATCCATCAT--TGTT-TTCATTTGAAAT-GATGTTTAGTCAG-------AAGGTT-TTGAGGA-TCCATCTTAGGC-AT--ATGTTATGGATGACCTCCA-----GCCTATGCTCTATGGTTCTAGTTGTTTTCCACAATATTCAGATCTGTATAGAAGAAC--ACTGAGAATGCTGCTTCT--GAAAAT-TT-TGATCTTGGTA--TGT---ATGC-TGATGTAAAAGTGTTTCAAGATTAACTTGAGTAGAGCAAAGACTTGAGAT-GC----CTTGC-T-----T-ATTCTTGCCTGC---------------AG-TTGCCATCTGTAGTC-ATC-GTAC-TGCCCAAATAAACAAGTT---GCACAT-CCTCtgttttacgtcatttcaattaat
gi|14 : tGTCCTATCCATTTCCATTTCTTCTTTTGCATTGCCT--GAGATAGAG-GCATG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAA-------AATATT-TGCAGAA-TCTGCCGGAGAC-AT-TGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCAAG--ACTCTGCCCCATACAATGATAC--TCCAAGGTCATTGCT
gi|15 : GGTAGCACATAAGGCC-TCGACTAGAGC-CCGCCATT--CAT--GTTGGTTGATT-G-AAAC--ACACT--CCAGATGCC-CCCCA-TGCCCAACC---TCTCT--CCTTCATCTCCT-------------------CC---AAGTTTCCTTGGGGCGGCTTCGCT--TTCT-TCGCCCATCTGGAGTCCAT
gi|16 : CACATAAGGCCTTC-AC-AGAGGGTTTTCAAC--TCA--GTCTGCC---T-G-CTGCTAAT-CTTAGTATCTGAC-CCC-A-AGTCCATCCAAAT---T--CTTTCATTTCTTTCTGAACTGAT---CTCCTCC---ATGTTTCTTTAAGTCGTCCCCTCT--Tt
gi|17 : AGATCTT-TAAT-TTGGTGGCTG----GTTT-GGATCTTGCTAGATTTCCAAATGTTATTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC----------------------ACGGTGAATC-TTAC-TTCCGAG
gi|19 : TCGTGTTGGAGTGCACATAAGGCCATC-ACCAGCTC-TCTCCAAC---AC--GTC
gi|2 : ctACGATCTTTCCTTTCTAAAATCCAGGC-TTGC-CTTTGCGTTATTT----GTG-TCA---------------------TACCGCTTTGTCTGTTATCCTGT--GCAGAA--AT---AATGCCTACTGATGA-TTTGC-TGGTAACTTGAACAGTTAGCATGATTCCCTCGCCAGTTGTGGTACAAATCCTGTCAGG---TCTCCTTTC-TGGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGG--ATGGTATTTTCTCTTTTGTGGACCAAATTTTC-TGAAGTATCTTGCGTAA-GTATTCGAGGatcaataaactgtat
gi|20 : TTGT---AGATT---GG-CT-CTCTCTTAATCCTTATCGTGCTGGTTTGCACATAAGGCCGTC-ACCtgtttgaagttccttctgcttttcaaaagttctgcattttttgtctattcctgcagctttcccattctttagaggcagacaatgcctttttgacttcactgatgtcaggtggttctgtgttgataatcaagcttgttttcagtggtgttataactgcctctgtttctggtcgtcatgttgaagacttgtttcaaatgtgatctatttccagcatttacaaaatctcttcttttttgacaggatgttaccttgctgattctttgaataggtatgttcgttgcgtggaatttccccgctaaaaagatcttcgtcaaagcggtagtaggatttgcatgtctttgtttttgaaggagcggctgttttctgcttcctcttgctaagctctcctaatatatgcctttcgatctgctttagctcccatctcacctctttatctagatctcctacttttttgccccagcttttcctttactctctctgatttcgtgataggatgctcttttctttccttttgttttcttccgcctttctgcaggtttcgtctgaacatccactcctcctttttttacgtttctttggccttaaaatttgttttccaagtctccaaacagtactttatgtaaaatcttccatatccacatcttgttttccatctgcaaggactgaaaatcggtttgcaaaccttctagttagaaagttcgttaacctgtgggtttttcagtttatgttgatgtcaagggtggcggtcttttggtcttttctcttgctttacggagttttaaactttagttttgccagcactagggattgatcgctaacaattgtctgcaccttgttttgcactacatccagtagactacttctccaatctcctgttgatgaattacatgatctatttggtttctgggtttttaccgtctggaagaaattccaatgtttgttttgtggatatctctatgcataaaagatggtccaccaacaccaagttgttttcctgacagaaacgtgctgccagtcggtctccatttgtcaattacttattctcccattcctttgctgtcccattaatgtttcttt
gi|21 : aaAAAGTCCAGATCTTCTAGCATTTCT--GT-CAT
gi|3 : -CTTCCAACATGAT--ATCTGTCA--T-GCGGACCAGTGCT--GTATT-GTCGCCC-AATGTCCAGCC---TCTGTTTCCTTCAT-TCCT-CTCGGTGGAT---CTTCTCC---AAGTCACTTTTGGCCTGC-TCTCT--TCCTCTTGCC-A-GTGGTGTC-ATCGCATTAGCA-AAAAAAAACCCCCTTGGGATG-GAATCAGG-TGCATCCTGCTAAACATGTTCTATCCATTTCCATTTCTTCTTT-GTATCGCCTTAAAGATAGAGCGCACG--GT--GTTG-GT-TTC--TCTGGTATTTAGT-CTTTGTTTGAGATCTTTTTGTGGCCAG-------AATATTTCGTAGAAATCCACCGGAGACCATTCGTGTC-TGGAAGACATCTAGTTTGGTTTATG----ATGGTA-TTGTGGTCTTCCATG--ACTCTGCCCAATACAGTAATACTTCCC--AGACATTGCTTTTTGAAAGATCTTGTAAT-TTGTTG-CTG----GTTTGGGATCTTGGCGGATTTCCATATGTTCTTCAGCACAGCAT---------ATGGCCCCTCTTGCTTTTTTGTAATTCTGGC-TGTACGTC-TTTT-C-AGAGTTTGCCGTCAGAGGTG-ATCGTTACTTTCCGAGAAACAC-AATTCACTCACTTCCCTCGAATGTCGGACCCCCCGTGTTCATGATGCAAGTCCTTTCATTCTTTTGG--TGAAACTTTTTT--CATTTTGATCTTAGTTATA-TTGGTGTTGATCTTTACGCCAATT-T-TTTTGGCTGTG-TTG-TTTCCA-TATCTACTGTTTT------GT-CTTGGATTGTCTC--GTGGGGGGACGATTGA-GATAGTTAGGCAATTAT-CATCCGCAAAGTCTAGATC-TCT----TTTCT--GT-CATCGTCCAGGTGATTGC-CCCTTCTCTTGTTCTTTAACACTTTT-GTTCATGATCCA-GTCAATGCAGAAGGTAAAAAGTAGAAGGG-ACTAAGGAGGCAGCCTTG-T-TTCACCCCAGTCATTCAATTC-AATGCTTCGGTCAAGCATTG---GTCCACATATAACTTGAGCACTGAAGTTCCACATAGAGC-ATTCTGATGATGGCCAGTGAGTTTGTCTGGAATTCCATAGTTAGCTGAGTATTCTTCCATAGTGCTGGTCAGGATTTAACAACTAT-TCAAAACCTTCGTAAAAGTCTTATG-AGTTGATGTAGAACTG--AGCAATTTCCATTCG-TTGCTCTGCTTCGAT-TATTTGTCCGGATGGTAAATATCTGGTCAGCACACG
gi|4 : -AGGT----GT--T-----------------------T-CCGCTTCG-AT-TTATCCTGCTGACTGAC--ATATGAAT-C-TGCTG-TGACTTTGC-TGGTAACTGTCTCAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGAGtc
gi|5 : tttttgttgttCTCTG-CTCCAT-TATTTATCT-GAGGGTAAAGATTTGGTCGTTACATGATCTTCCCCTCCGGAA-TCCCG-C-TTGTTCCTTTCTG-AGCTTAGGGT--CTA---------------------T-----TTGGTCTCTAATCTTGTTAAGT-----AT--G-AT-CTTGCTCAGCACTTTACTTGAT-ACTGA--CAGG-AGCATTAT-TCCTCTCCAGTTGT--TGGGG--TCTGT-GAGATTTCCCCTTTT-T-GGAAGTTTTACTAG-GAGGTCAGTTT------TCCAG---GGCTCTGGTGTC---AATTCAGTAGTCCAGATGTTC-TGCAGGATGTTT-GTGAGG-ACTTGtgtgttcgaagttcctctgcttttcaaaagttcgcatctattgatctatcccgcagctttcccattcttagagcttacaatgatttttgacttcgctgatgtcagatggttctgtgttaaaattgatctcaagcttgtttcacagctagtgtataactgcttctgtttctgggtcgtctatgttgcagacttgttcaaaatgatcttctcagcatttcaaaacctcatcttcttttgaaggtgtacctcgctgatcctttgataggtacactcgtttgtgtggaatttccgctgcaacgtcctcgtcaagcggtatagggattgcatgttctgttttgaagcggctgtttctgcgtcctttttgctaactctctattatatgtctttctgtctgctttagtctctattcgcctcttatctagatctctgtactctttgcccagtttttcctcactctctctggtttcggtttaagatgctcttttcctttttcctttcgtttctcaaccttctgctaggtttatctgaaaatcctcttcatcctgtttcattcttgacctagaatttgttttccagtctccaaacagtgccttgttaaaaacttccatatccatatctccttttcatatgcatggatgaaaatcgattgtgaatctttttagttggaaagctcgttaatttgtgtttttgcattttggttgatagcgagagtggtggtggccttgaatctgttctcattggcctttacggggttttaacttcagttttgccgcaccttgtttgccacaacatccaactatgattctactccttgttcctgttcattgaattaacataatcaatttggtttctgtttaccgtctggagaattattgttgttttgtgaagcccccatgcataaagatggttctcgcccaacacaagtttgtccctgggtcagacc
gi|6 : TTACTTAATCCTCATCGTGCTGGTTTGCACATAAGGCTGTC-ACCAGAGA-CTTCCAAT--GAT--GTCT------T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCAGCC---TCTGT--TCTTCATCTCCTTCTCGGTGGAT---CT---TCTTCAAGTCTCTTTTGGCCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAC-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAGCATGTCCTATCCATTTACATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-ATTTTGTGGCCAG-------AATATT-CACAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATT--ACTCTGCCCCATACAGTAATAC--CCCAAGGACATTACTTTT--GAAGATCTT-TA-T-TTGGTG-CTG----GTTT-GGATCTCGGGGGATTTCCAAATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATC-TTTTAC-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCGA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTT-GGGGTTGA-----CTTT--CG---TGATCATAGTTTTA-TTGGTGTTGATCTTTAACCCAA-T-TTGTTTGACTGTG-TTA-TT--CA-TATCTATCGTTTTTTAAAAGTTCTTGGAT-GTCTCT-GTGG-----CGAT-GA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCTAGA-CTT--------------T-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTgtgggtgactgtttcctcagccttgagcatatcggcatgaatttggtccatccctagagattagctgtttttcaaagacttgatagctgtttagacttcctcaagtgatggttggttggtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactttttcaaaatgttctttccagcacttcaattcttcttcaaggctatctgtgagtgtaccatttttcttgcgtattggtgtatttggcggagaactgtaacccccactaagagtcttggtaatttggtacagggttttcatgtcttgttttgctgctgcgagttccgcttctgttgcaagcttgtcgatgtaatttttcttgtctgttcttgcacttcgctttacatttttgtctttttgtaagtatttgcttttcaattgctcttttatgcggtttgatttagttgacagcattttcttcttggtttcttttctttcgtctatcttaccccatgtctcttttgatatccattcctcgtttttcctcttttaaagtattttttccagcttttagcagtgtattgtta
gi|7 : ATATATAATACATT----AAAATATCAGCCTT-----TAACTTGT---AGTTT---AT-TTACTTA---AATCCTCATTGTGCTGGATTGCACATAGGGCCGTT-ACCAGAGA-CTTCCAAT--GATATGTCTGTC---TTG-GGACCAATGCT--GTATT-GTC-CCC-A-TGTCCATCC---GTTGT--CCTTCATCTCCTTCTCGGTGAATTTTCT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGATGTCCATCGCAT-AGCA-A---------CCCTTGGGGTG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATATCCTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-AT-T-C--TCTGGTAT--AGTTCTTTGTTCGAGAT-TGTTTGTGGCCAGAATACAAAATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----GTGGTAGTTGTGGTCTTCAATA--ACTCTGCCTCATACAATAATAC--CCCGAAGAAATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTGACCAGTTC-TGGTCTTGGCAAATTTCGACATGTTCTTCAACATAGTAA---------AT-GCTCCTCTTGC-TTTTTGC-ATTCTGATTTGAACATT-TTTT-CAAGAG-TTGCCATCAGCGGTG-ATT-TTGC-TTCCAGGGTACACAAATTCACTCACTT-CCTCA-ATGTCTA-----CCGTGTTCAGGGTGACTGTCTTTTCAGCCTTT-GGGTTGA-----CTTT--CA---TGATGTTAGTTTTATTTGGTGTTGATCTTTAAACCAACT-T-GTTTGGCTGTG------------TATCTACTGTTTT------GT-
gi|9 : GAATGTCTCT-GTGA-----CTAT-GA-GATAGTAAG-TAA-TATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGT-CATCGTCCAGGTGA-GGTGCCCTTTTCTTGTTCTTT-ACGCTTTTTGTTCATCATCCA-GTCAATGCAGA------------------------GGA--CA----TG-TGTTCACTCCAGTC-TTCAAT-CAAATGCTTCGGTCAAGC-TTGTTTGTCCACATATAACTTGAGCAATGAAG-TCCATATAGAGTTATTTTGATGGTGG-CAATTAGCTTGTCTGGAATGCCATAGTGA-TTGAGTA-TCTTACATAGTGCTGGTC--GGTTTTAC-ACTATGCGAAAGCCTTGGTAAAAGTC-TATGAAGTTGATGTAG-ACTGTTAG-AA-TTCCACTCGTTTGCTCTG-TTCAATGTA-GTGTCT-GATAGTAAATATCTGGTCAGCAC--------CTCTTCTTAA-----AG-CGTTGCTCTGCACTC-AGTT----GTGGTCAATGTTTTTGTTGTTAGGTGTTT-CCGCTTCG-AT-TTATCCTGCTGACTGACATAT--GAAT--CTGCTG-TGACTTTGC-TGGTAACTGTCTCAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGA
blockSeqs : A A C . AG . G . GG A C T G T G GG ATG AT GAT T C T A TA T G C A A AAA T TT A T CT TTT CCT TTC GC CAT T TT C AAAAAAACC T T T C CT T TA C . . T C T CA TT C AATACAA T T A C TC A T CTCT C AT TT G TG G C G ACCA GG A G AGACTTGAG G C T A C G TTTTAC T A A G T A C A G ACCCC TG G AACTT . TTT T C T C T TTGTTTCCA TTAAAA T T T GGGGA T . A A T T A CT . T G A T . A AA AGAAGGG GG GC TG A T A T A TTT T T C G G T AG T A G C A T A A TT C T T C G TT G AA G G TGAGCTTAGG GGTCAATGTTTTTGTTGTTAGGTGTTT A TCTG CTGACAT ATGA GCC A T GAA T T T GG AT ATT . G A CCACTGA AA CT G TTTC T T C A T
blockSeqs : G . AT . C T A A . C C . A . . C G . T . . . T . C . C T CT . TCT . . TT C C . . . A . C CT T . . . . . . . . . . . . G . . T . . . T . . A . . . . T T T A . . C . . T G TTTTCA . G . . . T . . G . TT G . . . . G C . . CTATTAG . . T T . . . G G . . A . . . . . . . A G . . . T . . . T . . . . . T . . . T . . G A . A . T . . . . . TT . A . . GTTATTT GTCATA T TCTC TTGGC GA CT A . TCT C T . . . . . A C T A . G CT A T . G T
blockSeqs : . . T G . C T . . . . C G . T . . . G . C . T T TG . . . . TG C T . . . G . C CT T . . . . . . . . . . . . G . . C . . . T . . A . . . . . G C T . . C . . T A TTTTC . G . . . T . . T . G . . . . . C . . . TTATTCA . . . T . . . G G . . A . . . . . . . . . . . . . . . . . TT . A . . GTAGTT TCAC C AT CAGAA A C . . TCT C . . . . . . A T . A . . CT T . . A T
blockSeqs : T G . A G . . . . C G . . . . . G . C . C T TG . . . . TG C . . . . G . A CC T . . . . . . . . . . . . A . . C . . . G . . G . . . . . G G A . . T . . T A . . A . . . T . . T . . . . . A . . . . . . . . . . . G . . . . . . . . . . G . . . . TCAGTT CTAT G AT CTGAC G C . . A . . . . . . . . C . . . . C A . . . .
blockSeqs : A G . A G . . . . . . . . . . . T . T . C . TG . . . . A . C . . . . . . . . . . . . . . A . . . . . . . . . . . . . . T C C . . . . . . . . . . . . . . . . TT C G GT
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : *** CT ** ** TTTTC*** ** CTGTTG****** T* ***** TTAGTT***** CTGAC** C** TCT C****** CT**
originalCons : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTT-C-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCNA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTG-TTA-TT--CA-TATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTACGC-AGTT----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT-CCTGCTGATGACTTTGC-TGGTAACTGNCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
finalCons : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTCTTTTC---AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCNA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTGCTGTTG------TATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTACTTAGTT-----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAATC--TGCTGATGACTTTGC-TGGTAACTGTCTCAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTGAAGACTTGTTCAAAGTGATCTATCCAGCATTTCAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATACTTCGTCAAGCGATATAAGGATTACATGTCTTGTTTTGAAGCGGCTGTTTCTGCTTCCTCTGCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTTGTTCAGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTCTCCACCTTCTGCCAAGTTTCGTCTGAAATCCACTCCTCCTTTTTACATTTCTTTGGCCCTAGAATTTGTTTTCCAGTCTCCAACAGTACTTTGTTAAAATCTTCCATATCCACATCTTCTTTTCCATCTGCAAGGACTGAAAATCGGTTGCGAACTTCTGGTTGGAAAGCTCGTTGAACCTGTGGGTTTTTCAGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTTAGTTTTGCCCAGCACTAGGGATTGATCGCTACCAATGTCTGCACCTTGTTTTGNNNNAGTAGACTACTTCTCAATCTCCTGTTGATGATTACATGATCTATTTGTGTCCTGGTTCTGTCCTT
Unaligned ( gi|11 ): TTACTCTCTCTTATTTTGTTGATAGGATGCTCTTTTTCTTCCACCTTCTGCCAGGTTTTATCAAAAATCCACACCTCCTTCTTACGTTTCTTTGACCCTAGAATTTGTGTTCCAGTCTCCAACAGTACCTTGTTTTAAAACTTCCATATCCATATCTTCGTTTTCATCTGCCAGGACTGAAAATCGGTTGCGAACTTCTAGTTGGAAAGTTCGTTTAACTTGTGGGTTTTTCAGTTTGTTGATGTCAATGGGTGGTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTCAGTTTTGCCAGCACTAGGGAGTGATCGCTACCAATGTCTGCACCTTGTTTTACCACTACATCCAATAGACTACTTCTCCATCTCCTGTTGATGATTACAAGATGAATTTGGTTTCTGGTTTTACCGTCTGGAAAATTCCATGTTGTTTTGTGGATGTCCTTGTGCATAAAGATCGTTCCGCCAATCAATAAGTTGATTTCCTGACAGAATGTGCTCAGTCGGTCTCCATTGTCATTACTACTTGCTGTCCCATTATGTTTTCT
Unaligned ( gi|13 ): ATCATCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATGGGTACGTTCGTTGTGTGGAATTTCCCTGCTATAGTCTTCGTCAAGCGTTATAAAGATTTCATATCTTGTTTAGAAGCGGCTATTTCTGCTTCCTCTGCTAACTCATGCATGTATGCATGCATGTCTTTCTGTCTGCTTTAGTTCCCTTCTTCACCTGTTAATCTAGATCTCTATACTCGTTGCCCAGCTTTTCCTTTACTCTCTCTCTCTCTCTCTCTTTTTTATTTATATTTTTTTC
Unaligned ( gi|18 ): TCCATATCTTCTTTTCCATCTGCAAGGACTGGAAATCGGTTGCGTACTTCTAGTTGGAAAGCTCGTTGAACCTGCAGATTTTTGTTGATGTCAAGGGGTGGTGGTCTT
Alignments
lowQualScore : 2222 11 22222 222 333333 111 222 111 111 222 111 11 333333333 2222222 1111 11 2222 222222222 11111111 1 22222 1 22222 11 111 1 1111 4444 222222 22222 11 2 1 1 11 33333333 11 22 111 1 1 222 1 1 1 1 1 11 1 1 1 1 11 1 1 1 11 1111 6666666666666666666666666666 2222 1111111 222 1111 1 333333 1 11 11 111 3333333 11 1 1111 2 1
lowQualScore : 1 1 1 4444 88 66666 6 333 111111 7 2 3 1 3 5 66 444 77 555 6 6 1 3 99 7 6 6 6 1 000 1 77 3 5 33 000 000 000 0 77 777 1 11 8 222222222 8 1 8 2 44 3 99 6 99 99 6 6 6 99 99 6 1111111 6 2 6 6 77 6 6 4444 5 99 99 6 11 6 6 6 0000 99 1 1 666666666 6 1 6 6 1 2 88888888 6 2 6 6 6 0 1 8 0 1 00000 0 55 0 00000 11 444 0 8 1 6 8 8 0 3333 5555 333333 8 66 88 88888 11 8 3 3 8 8 3 99 6 8 8 0 0 0 3 00 00000000 00 00 777 3 7 7 7 3 333 3 3 3 1 3 3 88 7 3 3 1 7 3 3 0 33 0 0 0 8 8 11 8 11 8 8 0 6 44 4444 2222222222222222222222222222 3 4444 6666666 111 2222 0 8 0 000000 3 0 8 11 11 444 8 3 1 6666666 88 11 0 5555 1 0 8 6 0
lowQualScore : . . . .... .. ..... . ... ...... . . . . . . .. ... .. ... . . . . .. . . . . . ... . .. . . .. ... ... ... . .. ... . .. . ......... . . . . .. . .. . .. .. . . . .. .. . ....... . . . . .. . . .... . .. .. . .. . . . .... .. . . ......... . . . . . . ........ . . . . . . . . . . ..... . .. . ..... .. ... . . . . . . . .... .... ...... . .. .. ..... .. . . . . . . .. . . . . . . . .. ........ .. .. ... . . . . . ... . . . . . . .. . . . . . . . . .. . . . . . .. . .. . . . . .. .... ............................ . .... ....... ... .... . . . ...... . . . .. .. ... . . . ....... .. .. . .... . . . . .
lowQualScore : 0 0 0 5555 00 55555 7 333 777777 3 5 5 0 0 7 77 444 99 000 7 7 0 7 22 3 7 7 7 0 000 7 99 0 0 44 000 000 000 1 99 888 0 88 0 000000000 0 4 0 5 00 2 22 7 22 22 7 7 7 22 22 7 7777777 7 2 7 7 77 7 7 2222 7 22 22 3 00 7 7 7 8888 22 0 0 777777777 7 0 7 7 7 2 55555555 7 2 7 7 7 8 4 0 0 0 00000 6 88 0 00000 00 000 8 0 0 0 0 0 8 0000 4444 000000 0 88 88 00000 44 0 2 2 0 0 2 22 7 0 0 0 0 0 2 22 77777777 33 00 777 3 3 3 3 3 333 3 3 3 0 3 3 33 3 3 3 0 3 3 2 0 22 0 0 0 0 0 88 0 88 0 0 8 7 00 2222 2222222222222222222222222222 7 7777 2222222 000 2222 6 0 8 888888 2 6 0 00 00 000 0 8 0 2222222 88 00 0 0000 4 4 0 4 6
consensus : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTT-C-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCNA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTG-TTATTTC-GTATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTAC-TTAGTT----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT--C-TGCTGATGACTTTGC-TGGTAACTGTCT---CAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
Reference ( family-1222 ) : ATATNTNATANATTTTATAAAATATCAGCCTTCAAGATAACTTGT---AGTTT---AT-TTACTTACTTAATCCTCATCGTGCTGGNTTGCACATAAGGCCGTC-ACCAGAGN-CTTCCAAC--GAT--GTCTGTC---T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCANCC---TCTGT--CCTTCATCTCCTTCTCGGCGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAT-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAG-------AATATT-CGCAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATG--ACTCTGCCCCATACAGTAATAC--CCCGAGGACATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTG----GTTC-GGATCTTGGCGGATTTCCANATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC-TTTT-C-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCNA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTTTGGGGTTGA-----CTTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAANCCAA-T-T-GTTTGGCTGTG-CTGTT---GTATCTACTGTTTT------GT-CTTGGATTGTCTCT-GTGG-----CGATTGA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCCAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACGCTTTT-GTTCATGATCCA-GTCAATGCAGAAGGT-GAAAGT---AGGG-ACTAAGGAGGCA-CCTTG-T-TTCACTCCAGTC-TTCAATTCAAATGCTTCGGTCAAGC-TTG---GTCCACATATAACTTGAGCACTGAAG-TCCACATAGAGC-ATTCTGATGATGG-CAATNAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCTTCCATAGTGCTGGTC--GGTTTTAC-ACTAT-CGAAAGCCTTNGTAAAAGTC-TATGAAGTTGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCT-GATGGTAAATATCTGGTCAGCACACGATCTTCCCTTTCTAAA-TCCAG-C-TTGCTCTTTAC-TTAGTT----GT--TCA---------------------T-CCGCTTCGTNTGTTATCCTGTTGACTGAC--AT--GAAT--C-TGCTGATGACTTTGC-TGGTAACTGTCT---CAGGCAGCATGAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACNAACCAACCCCTTTC------TCCAG-AAGG--ATGGTATCT--TTTTTTGTGGACCAAATTTTCTTGAAGTATCTTG-GTAAGGTATTTGAGG
gi|1 : ATATCTCATAGATTTTATAAAATATC--TTTTCAAGATAACTT-TGAAAGTTTGATATATTACTTACTAAATGTTCTTCGTGTTGGGTTGCACAAAAGGTCGTC-ACCAGAGT-CTTCCAAT--AAT--GCCTGTCC--T-G-GGACCAATACT--GTATTTGTC-CCA-A-TGTCCAACC---TCTGT--CCTTCATCTCCTTATCGGTGGAT---CT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGGT--CCATCGCAT-AGCA-A---------CCCTTGGGATG-GAATCAGGGTGCATTCTGC-AAACATGTCCTATCCATTT--------------GTATTGCCT--GAGATATAG-GCACGTTGTAAGTTG-AT-T-C--TATGGTAT--AGTTCTTTGTCTGAGAT-TTTTTGTGGCCAG-------AATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTCGTTTATG----ATGGTATTTGTGATCTTCCATG--ACTCTGCCCCATACAGTAATAC--TCCAAGGACATTGCTTTT--GGAGATCTT-TAAT-TTGGGG-CTG----GTTC-TGATCTTGGCGGATTTCCATATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATCATTTT-C-AGAG-CTGCCATCAGCAGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCATAT-TCTCA-ATGTCTA------------CAGGATGACTGTCTCTTCAGCCTTTGGGGTTGA-----CCTTGGCA---TGACCTTAG-TTTA-TTGGTGCTTGTTTTTAAA-CAA-T-T-ATTT-GCTGTGTTTATTTCATTATCTACT-TTTT------GT-CTTGGATTGTCTCTGGTGGC----CGATTGACTATA-TAAGGCAA-TAT-CATCTGCAAAGTCCAGATCTTCTAGCATTTCT--GTGCATCGTCCATTTGA-TGC-CCCTTCTCTTGTTCTTTCATGCTTTC-GTTCATGATCCATGTCAATGCAGAAGGT-GAAAGT---AGGGCACTAAATAGACA-CCTTGTT-TTCACTCCAGTC-TTCAATTCAAATGCTTCGG-CTAGC-TTG---GTCCACATATACCTTGAGCACTAAAG-TACACATAGAGC-ATTCTGATGATGG-CAATAAGCTTGTCTGGAATTCCATAGTGA-CTGAGTA-TCGTCCACAATGCTGGTC--GG-TTTAC-ACTAT-CGAATGCCTTAGT-AAAGTC-TATGAAATTGATGTAA-ACTG-TTG-AA-TTCCACTCG-TTATTCTG-TTCAAT-TTTAAGTCT-GATGGTAAATATCTGGTCAACACATGATCTTCCCTTTCTAAG-TCCAG-C-TTGCTCTTTAC-ACA-------GT--TCA---------------------T-CCGCTTTGTGTGTTATCCTGTTGA--GA---AT---AAT--CATGCTGATGACGTTGC-TGGTAACTGAC------AGCAGTATGAT-CCTTCGCCAGTTGT--TACAA--TCTGTCAAG---TCTCCTTTCGTAGACAACTTTA-AAACCAATCCCTTTC------TCCAG-AAGG--ATGGTAT-T--TTTTCTGTGAAGCAAATTTTC-TGAAGTATCTTG-GTAGGG--TTTGAGG
gi|10 : -----CTGTATTCAGGATGACTGTCTCTTCATTCTTTGGG-TTGA-----CGTT--CA---TGATCTTAGTTTTA-TTGGTGTTGATCTTTAACCCAA-TCT-GTTTGGCTGTG-CTATTA--GTATCTACTGTTTT------GT-CTTGGA-TGTCTCT-GTGG-----CGA-TGA-GATAATAAGACAA-TAT-CATCCGCAAAGTCTAGATCTTCTAGCATTTCT--GT-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTTT-ACACTTTT-GGTCATGATCCA-GTCAATGCAGAAGGT-GAAA
gi|10 : ATGAAAATGATGTAG-ACTG-TAG-AA-TTCCACTCG-TTGCTCTG-TTCAAT-TATTTGTCG-GATGGTAAATATCTGGTCAGCACACGACTTTCCCTATCTAAA-TCCAG-C-TTGCTCTTTAC-GTAGTT----GT--TCA---------------------C-CTGCTTAG---GTAAT--TGTTGATTGGC--agnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaaaatgatgtagactgtagaattccactcgttgctctgttcaattatttgtcggatggtaaatatctggtcagcacacgactttccctatctaaatccagcttgctctttacgtagttgttcacctgcttaggtaattgttgattggctgttttacgtcatttcaattaat
gi|12 : ctgtattcaggatgactgtctcttcattctttgggttgacgttcatgatcttagttttattggtgttgatctttaacccaatctgtttggctgtgctattagtatctactgttttgtcttggatgtctctgtggcgatgagataataagacaatatcatccgcaaagtctagatcttctagcatttctgtcatcgtccaggtgatgccccttctcttgttctttacacttttggtcatgatccagtcaatgcagaaggtgaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnC---TTTGT--CCTTTATATTTCTCTCCACTGTT---CT---CC---ATGTCCCCCTTGGTCTTCC-CTTTGCCCCTCTTTCCTT-GAGGTGTCTGTCGGA---GCACA---------CATCTGGTAAGTGATTCCAAGAGCCTTCAGC-AGACATGACCCAGCCATCTCCATTT------TTGTA---CC------ATGAAG-ATATA--TT--GTTGTGTCT-CCATCCATCAT--TGTT-TTCATTTGAAAT-GATGTTTAGTCAG-------AAGGTT-TTGAGGA-TCCATCTTAGGC-AT--ATGTTATGGATGACCTCCA-----GCCTATGCTCTATGGTTCTAGTTGTTTTCCACAATATTCAGATCTGTATAGAAGAAC--ACTGAGAATGCTGCTTCT--GAAAAT-TT-TGATCTTGGTA--TGT---ATGC-TGATGTAAAAGTGTTTCAAGATTAACTTGAGTAGAGCAAAGACTTGAGAT-GC----CTTGC-T-----T-ATTCTTGCCTGC---------------AG-TTGCCATCTGTAGTC-ATC-GTAC-TGCCCAAATAAACAAGTT---GCACAT-CCTCtgttttacgtcatttcaattaat
gi|14 : tGTCCTATCCATTTCCATTTCTTCTTTTGCATTGCCT--GAGATAGAG-GCATG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-TTTTTGTGGCCAA-------AATATT-TGCAGAA-TCTGCCGGAGAC-AT-TGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCAAG--ACTCTGCCCCATACAATGATAC--TCCAAGGTCATTGCT
gi|15 : GGTAGCACATAAGGCC-TCGACTAGAGC-CCGCCATT--CAT--GTTGGTTGATT-G-AAAC--ACACT--CCAGATGCC-CCCCA-TGCCCAACC---TCTCT--CCTTCATCTCCT-------------------CC---AAGTTTCCTTGGGGCGGCTTCGCT--TTCT-TCGCCCATCTGGAGTCCAT
gi|16 : CACATAAGGCCTTC-AC-AGAGGGTTTTCAAC--TCA--GTCTGCC---T-G-CTGCTAAT-CTTAGTATCTGAC-CCC-A-AGTCCATCCAAAT---T--CTTTCATTTCTTTCTGAACTGAT---CTCCTCC---ATGTTTCTTTAAGTCGTCCCCTCT--Tt
gi|17 : AGATCTT-TAAT-TTGGTGGCTG----GTTT-GGATCTTGCTAGATTTCCAAATGTTATTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACGTC----------------------ACGGTGAATC-TTAC-TTCCGAG
gi|19 : TCGTGTTGGAGTGCACATAAGGCCATC-ACCAGCTC-TCTCCAAC---AC--GTC
gi|2 : ctACGATCTTTCCTTTCTAAAATCCAGGC-TTGC-CTTTGCGTTATTT----GTG-TCA---------------------TACCGCTTTGTCTGTTATCCTGT--GCAGAA--AT---AATGCC-TACTGATGA-TTTGC-TGGTAACT---TGAACAGTTAGCATGATTCCCTCGCCAGTTGTGGTACAAATCCTGTCAGG---TCTCCTTTC-TGGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGG--ATGGTATTTTCTCTTTTGTGGACCAAATTTTC-TGAAGTATCTTGCGTAA-GTATTCGAGGatcaataaactgtat
gi|20 : TTGT---AGATT---GG-CT-CTCTCTTAATCCTTATCGTGCTGGTTTGCACATAAGGCCGTC-ACCtgtttgaagttccttctgcttttcaaaagttctgcattttttgtctattcctgcagctttcccattctttagaggcagacaatgcctttttgacttcactgatgtcaggtggttctgtgttgataatcaagcttgttttcagtggtgttataactgcctctgtttctggtcgtcatgttgaagacttgtttcaaatgtgatctatttccagcatttacaaaatctcttcttttttgacaggatgttaccttgctgattctttgaataggtatgttcgttgcgtggaatttccccgctaaaaagatcttcgtcaaagcggtagtaggatttgcatgtctttgtttttgaaggagcggctgttttctgcttcctcttgctaagctctcctaatatatgcctttcgatctgctttagctcccatctcacctctttatctagatctcctacttttttgccccagcttttcctttactctctctgatttcgtgataggatgctcttttctttccttttgttttcttccgcctttctgcaggtttcgtctgaacatccactcctcctttttttacgtttctttggccttaaaatttgttttccaagtctccaaacagtactttatgtaaaatcttccatatccacatcttgttttccatctgcaaggactgaaaatcggtttgcaaaccttctagttagaaagttcgttaacctgtgggtttttcagtttatgttgatgtcaagggtggcggtcttttggtcttttctcttgctttacggagttttaaactttagttttgccagcactagggattgatcgctaacaattgtctgcaccttgttttgcactacatccagtagactacttctccaatctcctgttgatgaattacatgatctatttggtttctgggtttttaccgtctggaagaaattccaatgtttgttttgtggatatctctatgcataaaagatggtccaccaacaccaagttgttttcctgacagaaacgtgctgccagtcggtctccatttgtcaattacttattctcccattcctttgctgtcccattaatgtttcttt
gi|21 : aaAAAGTCCAGATCTTCTAGCATTTCT--GT-CAT
gi|3 : -CTTCCAACATGAT--ATCTGTCA--T-GCGGACCAGTGCT--GTATT-GTCGCCC-AATGTCCAGCC---TCTGTTTCCTTCAT-TCCT-CTCGGTGGAT---CTTCTCC---AAGTCACTTTTGGCCTGC-TCTCT--TCCTCTTGCC-A-GTGGTGTC-ATCGCATTAGCA-AAAAAAAACCCCCTTGGGATG-GAATCAGG-TGCATCCTGCTAAACATGTTCTATCCATTTCCATTTCTTCTTT-GTATCGCCTTAAAGATAGAGCGCACG--GT--GTTG-GT-TTC--TCTGGTATTTAGT-CTTTGTTTGAGATCTTTTTGTGGCCAG-------AATATTTCGTAGAAATCCACCGGAGACCATTCGTGTC-TGGAAGACATCTAGTTTGGTTTATG----ATGGTA-TTGTGGTCTTCCATG--ACTCTGCCCAATACAGTAATACTTCCC--AGACATTGCTTTTTGAAAGATCTTGTAAT-TTGTTG-CTG----GTTTGGGATCTTGGCGGATTTCCATATGTTCTTCAGCACAGCAT---------ATGGCCCCTCTTGCTTTTTTGTAATTCTGGC-TGTACGTC-TTTT-C-AGAGTTTGCCGTCAGAGGTG-ATCGTTACTTTCCGAGAAACAC-AATTCACTCACTTCCCTCGAATGTCGGACCCCCCGTGTTCATGATGCAAGTCCTTTCATTCTTTTGG--TGAAACTTTTTT--CATTTTGATCTTAGTTATA-TTGGTGTTGATCTTTACGCCAATT-T-TTTTGGCTGTG-TTGTTTCCATATCTACTGTTTT------GT-CTTGGATTGTCTC--GTGGGGGGACGATTGA-GATAGTTAGGCAATTAT-CATCCGCAAAGTCTAGATC-TCT----TTTCT--GT-CATCGTCCAGGTGATTGC-CCCTTCTCTTGTTCTTTAACACTTTT-GTTCATGATCCA-GTCAATGCAGAAGGTAAAAAGTAGAAGGG-ACTAAGGAGGCAGCCTTG-T-TTCACCCCAGTCATTCAATTC-AATGCTTCGGTCAAGCATTG---GTCCACATATAACTTGAGCACTGAAGTTCCACATAGAGC-ATTCTGATGATGGCCAGTGAGTTTGTCTGGAATTCCATAGTTAGCTGAGTATTCTTCCATAGTGCTGGTCAGGATTTAACAACTAT-TCAAAACCTTCGTAAAAGTCTTATG-AGTTGATGTAGAACTG--AGCAATTTCCATTCG-TTGCTCTGCTTCGAT-TATTTGTCCGGATGGTAAATATCTGGTCAGCACACG
gi|4 : -TTAGGT----GT--T-----------------------T-CCGCTTCG-AT-TTATCCTGCTGACTGAC--ATATGAAT--C-TGCTG-TGACTTTGC-TGGTAACTGTCT---CAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGAGtc
gi|5 : tttttgttgCTCTG-CTCCAT-TATTTATCT-GAGGGTAAAGATTTGGTCGTTACATGATCTTCCCCTCCGGAA-TCCCG-C-TTGTTCCTTTC-TGAGCTTAGGGT--CTA---------------------T-----TTGGTCTCTAATCTTGTTAAGT-----AT--GATC--T-TGCTCAGCACTTTACTTGAT-ACTG--A---CAGG-AGCATTAT-TCCTCTCCAGTTGT--TGGGG--TCTGT-GAGATTTCCCCTTTT-T-GGAAGTTTTACTAG-GAGGTCAGTTT------TCCAG---GGCTCTGGTGTC---AATTCAGTAGTCCAGATGTTC-TGCAGGATGTTT-GTGAGG-ACTTGtgtgttcgaagttcctctgcttttcaaaagttcgcatctattgatctatcccgcagctttcccattcttagagcttacaatgatttttgacttcgctgatgtcagatggttctgtgttaaaattgatctcaagcttgtttcacagctagtgtataactgcttctgtttctgggtcgtctatgttgcagacttgttcaaaatgatcttctcagcatttcaaaacctcatcttcttttgaaggtgtacctcgctgatcctttgataggtacactcgtttgtgtggaatttccgctgcaacgtcctcgtcaagcggtatagggattgcatgttctgttttgaagcggctgtttctgcgtcctttttgctaactctctattatatgtctttctgtctgctttagtctctattcgcctcttatctagatctctgtactctttgcccagtttttcctcactctctctggtttcggtttaagatgctcttttcctttttcctttcgtttctcaaccttctgctaggtttatctgaaaatcctcttcatcctgtttcattcttgacctagaatttgttttccagtctccaaacagtgccttgttaaaaacttccatatccatatctccttttcatatgcatggatgaaaatcgattgtgaatctttttagttggaaagctcgttaatttgtgtttttgcattttggttgatagcgagagtggtggtggccttgaatctgttctcattggcctttacggggttttaacttcagttttgccgcaccttgtttgccacaacatccaactatgattctactccttgttcctgttcattgaattaacataatcaatttggtttctgtttaccgtctggagaattattgttgttttgtgaagcccccatgcataaagatggttctcgcccaacacaagtttgtccctgggtcagacc
gi|6 : TTACTTAATCCTCATCGTGCTGGTTTGCACATAAGGCTGTC-ACCAGAGA-CTTCCAAT--GAT--GTCT------T-G-GGACCAATGCT--GTATTTGTC-CCC-A-TGTCCAGCC---TCTGT--TCTTCATCTCCTTCTCGGTGGAT---CT---TCTTCAAGTCTCTTTTGGCCTGCCTCTCT--TCCTCTTGCCTG-GTGGTGTCCATCGCAC-AGCA-A---------CCCTTGGGATG-GAGTCAGGGTGCATCCTGC-AAGCATGTCCTATCCATTTACATTTCTTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-GT-T-C--TCTGGTAT--AGTTCTTTGTTTGAGAT-ATTTTGTGGCCAG-------AATATT-CACAGAA-TCCGCCGGAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----ATGGTATTTGTGGTCTTCCATT--ACTCTGCCCCATACAGTAATAC--CCCAAGGACATTACTTTT--GAAGATCTT-TA-T-TTGGTG-CTG----GTTT-GGATCTCGGGGGATTTCCAAATGTTCTTCAGCATAGCAA---------AT-GCCCCTCTTGC-TTTTTGT-ATTCTGGCTTGTACATC-TTTTAC-AGAG-TTGCCGTCAGCGGTG-ATC-TTGC-TTCCGAGGTACACAAATTCACTCACTT-CCTCG-ATGTCGA-----CCGTGTTCAGGATGACTGTCTCTTCATTCTT-GGGGTTGA-----CTTT--CG---TGATCATAGTTTTA-TTGGTGTTGATCTTTAACCCAA-T-TTGTTTGACTGTG-TTATTC--ATATCTATCGTTTTTTAAAAGTTCTTGGAT-GTCTCT-GTGG-----CGAT-GA-GATAGTAAGGCAA-TAT-CATCCGCAAAGTCTAGA-CTT--------------T-CATCGTCCAGGTGA-TGC-CCCTTCTCTTGTTCTgtgggtgactgtttcctcagccttgagcatatcggcatgaatttggtccatccctagagattagctgtttttcaaagacttgatagctgtttagacttcctcaagtgatggttggttggtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactttttcaaaatgttctttccagcacttcaattcttcttcaaggctatctgtgagtgtaccatttttcttgcgtattggtgtatttggcggagaactgtaacccccactaagagtcttggtaatttggtacagggttttcatgtcttgttttgctgctgcgagttccgcttctgttgcaagcttgtcgatgtaatttttcttgtctgttcttgcacttcgctttacatttttgtctttttgtaagtatttgcttttcaattgctcttttatgcggtttgatttagttgacagcattttcttcttggtttcttttctttcgtctatcttaccccatgtctcttttgatatccattcctcgtttttcctcttttaaagtattttttccagcttttagcagtgtattgtta
gi|7 : ATATATAATACATT----AAAATATCAGCCTT-----TAACTTGT---AGTTT---AT-TTACTTA---AATCCTCATTGTGCTGGATTGCACATAGGGCCGTT-ACCAGAGA-CTTCCAAT--GATATGTCTGTC---TTG-GGACCAATGCT--GTATT-GTC-CCC-A-TGTCCATCC---GTTGT--CCTTCATCTCCTTCTCGGTGAATTTTCT---CC---AAGTCTCTTTTGGTCTGCCTCTCT--TCCTCTTGCCTG-GTGATGTCCATCGCAT-AGCA-A---------CCCTTGGGGTG-GAGTCAGGGTGCATCCTGC-AAACATGTCCTATCCATTTCCATATCCTCTTTTGTATTGCCT--GAGATAGAG-GCACG--GT--GTTG-AT-T-C--TCTGGTAT--AGTTCTTTGTTCGAGAT-TGTTTGTGGCCAGAATACAAAATATT-CACAGAA-TCCGCCGAAGAC-AT-CGTGTC-TGGAAGACATCTAG-TTGGTTTATG----GTGGTAGTTGTGGTCTTCAATA--ACTCTGCCTCATACAATAATAC--CCCGAAGAAATTGCTTTT--GAAGATCTT-TAAT-TTGGTG-CTGACCAGTTC-TGGTCTTGGCAAATTTCGACATGTTCTTCAACATAGTAA---------AT-GCTCCTCTTGC-TTTTTGC-ATTCTGATTTGAACATT-TTTT-CAAGAG-TTGCCATCAGCGGTG-ATT-TTGC-TTCCAGGGTACACAAATTCACTCACTT-CCTCA-ATGTCTA-----CCGTGTTCAGGGTGACTGTCTTTTCAGCCTTT-GGGTTGA-----CTTT--CA---TGATGTTAGTTTTATTTGGTGTTGATCTTTAAACCAACT-T-GTTTGGCTG-------T---GTATCTACTGTTTT------GT-
gi|9 : GAATGTCTCT-GTGA-----CTAT-GA-GATAGTAAG-TAA-TATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGT-CATCGTCCAGGTGA-GGTGCCCTTTTCTTGTTCTTT-ACGCTTTTTGTTCATCATCCA-GTCAATGCAGA------------------------GGA--CA----TG-TGTTCACTCCAGTC-TTCAAT-CAAATGCTTCGGTCAAGC-TTGTTTGTCCACATATAACTTGAGCAATGAAG-TCCATATAGAGTTATTTTGATGGTGG-CAATTAGCTTGTCTGGAATGCCATAGTGA-TTGAGTA-TCTTACATAGTGCTGGTC--GGTTTTAC-ACTATGCGAAAGCCTTGGTAAAAGTC-TATGAAGTTGATGTAG-ACTGTTAG-AA-TTCCACTCGTTTGCTCTG-TTCAATGTA-GTGTCT-GATAGTAAATATCTGGTCAGCAC--------CTCTTCTTAA-----AG-CGTTGCTCTGCAC-TCAGTT----GTGGTCAATGTTTTTGTTGTTAGGTGTTT-CCGCTTCG-AT-TTATCCTGCTGACTGACATAT--GAAT--C-TGCTG-TGACTTTGC-TGGTAACTGTCT---CAGGCAGCA-GAT-CCCTCGCCAGTTGT--TACAG--TCTGTCAAG---TCTCCTTTC-TAGGTAACTTTACCAACCAACCCCTTT-------TTCAG-AAGG--AT-GTATCT--TTTTTTGTGGACCAAATTATCTTGAAGTATCTTG-ATAAAGTATTTGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTTGAAGACTTGTTCAAAGTGATCTATCCAGCATTTCAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATACTTCGTCAAGCGATATAAGGATTACATGTCTTGTTTTGAAGCGGCTGTTTCTGCTTCCTCTGCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTTGTTCAGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTCTCCACCTTCTGCCAAGTTTCGTCTGAAATCCACTCCTCCTTTTTACATTTCTTTGGCCCTAGAATTTGTTTTCCAGTCTCCAACAGTACTTTGTTAAAATCTTCCATATCCACATCTTCTTTTCCATCTGCAAGGACTGAAAATCGGTTGCGAACTTCTGGTTGGAAAGCTCGTTGAACCTGTGGGTTTTTCAGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTTAGTTTTGCCCAGCACTAGGGATTGATCGCTACCAATGTCTGCACCTTGTTTTGNNNNAGTAGACTACTTCTCAATCTCCTGTTGATGATTACATGATCTATTTGTGTCCTGGTTCTGTCCTT
Unaligned ( gi|11 ): TTACTCTCTCTTATTTTGTTGATAGGATGCTCTTTTTCTTCCACCTTCTGCCAGGTTTTATCAAAAATCCACACCTCCTTCTTACGTTTCTTTGACCCTAGAATTTGTGTTCCAGTCTCCAACAGTACCTTGTTTTAAAACTTCCATATCCATATCTTCGTTTTCATCTGCCAGGACTGAAAATCGGTTGCGAACTTCTAGTTGGAAAGTTCGTTTAACTTGTGGGTTTTTCAGTTTGTTGATGTCAATGGGTGGTGGTCTTTTCTCTTGGCTTTACGGAGTTTTAACTTCAGTTTTGCCAGCACTAGGGAGTGATCGCTACCAATGTCTGCACCTTGTTTTACCACTACATCCAATAGACTACTTCTCCATCTCCTGTTGATGATTACAAGATGAATTTGGTTTCTGGTTTTACCGTCTGGAAAATTCCATGTTGTTTTGTGGATGTCCTTGTGCATAAAGATCGTTCCGCCAATCAATAAGTTGATTTCCTGACAGAATGTGCTCAGTCGGTCTCCATTGTCATTACTACTTGCTGTCCCATTATGTTTTCT
Unaligned ( gi|13 ): ATCATCTTCTTTTGACAGGGTGTTACCTTGCTGATCTTTGATGGGTACGTTCGTTGTGTGGAATTTCCCTGCTATAGTCTTCGTCAAGCGTTATAAAGATTTCATATCTTGTTTAGAAGCGGCTATTTCTGCTTCCTCTGCTAACTCATGCATGTATGCATGCATGTCTTTCTGTCTGCTTTAGTTCCCTTCTTCACCTGTTAATCTAGATCTCTATACTCGTTGCCCAGCTTTTCCTTTACTCTCTCTCTCTCTCTCTCTTTTTTATTTATATTTTTTTC
Unaligned ( gi|18 ): TCCATATCTTCTTTTCCATCTGCAAGGACTGGAAATCGGTTGCGTACTTCTAGTTGGAAAGCTCGTTGAACCTGCAGATTTTTGTTGATGTCAAGGGGTGGTGGTCTT