lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 3333333 0000000000000000000000000000000000000000 1 11 333333333 99999999999999999999999999999999 1 1 3333333333333333 111111 7777777777777 222 777777777777777 1 11 11 22 1 1 88888888888888 1 1 1 55555555555555555 999999999999999999999999999999999999999
lowQualScore : 3 3 77 8888888 2 4 1 9999999999999999999999999999999999999999 9 55 0 33 333333333 6 99999999999999999999999999999999 3 4 1 5 0 5555555555555555 99 0 0 888888 0000000000000 0 6 555 444444444444444 7 5 3 77 77 11 5 2 5 88888888888888 0 3 5 66 5 4 88 0 7 00000000000000000 000000000000000000000000000000000000000 3 1 9999 3 6
lowQualScore : . . .. ....... . . . ........................................ . .. . .. ......... . ................................ . . . . . ................ .. . . ...... ............. . . ... ............... . . . .. .. .. . . . .............. . . . .. . . .. . . ................. ....................................... . . .... . .
lowQualScore : 3 7 99 2222222 2 2 0 2222222222222222222222222222222222222222 8 55 0 88 000000000 5 55555555555555555555555555555555 2 5 8 2 6 2222222222222222 00 8 6 222222 8888888888888 8 7 333 333333333333333 3 5 0 00 00 00 0 5 5 00000000000000 5 0 0 00 5 0 55 7 0 00000000000000000 222222222222222222222222222222222222222 2 0 3333 9 0
consensus : TACAGTGCTCCCTCGATATATCG--CCCCC--TC-C-GTTATAATGCCACCCTCGCTTATTGCCTGCAAATCCTTAACGAACGA--GTT-------A----ANAC-CCTCCGTTATAATGCCAACCCCG-C--ATAACG------CCATATGCCACCGA--TTTTT-----CAAACAAAGAAAT--TC-AATGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGA-C--GTAC----TGGACAAGGTATTCAGGCGGCCAGG-ATAA-T-C------TTACTTAAAATAAANCTCGAN-ATTATN-TAAATGTNNGTACAGAATGTAGNCACAATTGCATTAGACGACGTNACTGGNTTTCTTTCGGCTGCTGGNNTAANTTNTTAGTAATGGCGAAGTC-G-TT------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Reference ( gi|1 ) : TACAGTGTTCCCTCAATATACTG--CCCCC--TCCCCATTATAATGCCACTCCCACTTATTGCCTACAAATC--TAA-----AA--GTT-------A----AAAA-CCTACATTATAATGCTAACCCCA-C--ATAATG------CCATATGCCACC-A--TTTTT-----CAAACGAAGAAATGGTCAAATGTTATAGGGTTTTCCTTCTATAATAATGCCAATTAC----------CTAATGCCCATCCGTAATCACACCTGTACATTGAGAGAGGTGAGGTGAAGTGTG--T--GTAT----TGGACAAGGTATGCAGTCAGCCAGGAATAAATGC------TTACTTAAAATAAAACTCAAG-ATTATC-TAAATGTCCATACAGAATTTAGCCATAAT--AATTAAATTAAATGACTGAATTTCTTTTGACTGCTAGATTAAATCCTCAGTAATGGTGAATTT-T-TT------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CGAAAGTTGGCAATATATCAAAGGAGTACTGTA
gi|2 : TACAGTGCTCCCTTAATATATTG--
gi|11 : atgttacagagtttacccttgataataatgccaattacctaacacctatctgtaatcccacttgtactttgagagagctgaaataaagtctgacagggtgaacatggtattcagggggccaatataactactcataattacttaaataaaattcgaaatgatggaaatgttgatacaaaatgtagcccaataaatgacgttactgaatttctttcgactgctagcttatttgtcagtaatggtgaagttatattgccatccccacaatattgccaaaattggtcttgcacaaaagttgtTACAGTGTTCCCTCGATGTATTG--CCCCCAATTACAATTATAATGCCACCCTCGCTTATTGCCTGCAAA
gi|13 : aTACAGTGCTCCCTCTATATATTG--CCatccttaagaa
gi|14 : gtcatattgccacagccaccctcacttggtcttgtacaaaagttTACAGTGCTCCCTTGATATATTG--CCATC--G----GTTATAATGCCACCCCTACTTATTGCCT
gi|12 : atgTACAGTGTTCCCTCGATATATCG--CCga
gi|3 : tataacgccaccctctctataatgccaaaatggttggaaccaaaagctACAGTGTTCCCTCGATATACTGCACCCCC--T
gi|16 : ACAGTGTTCCCTCAATATATCG--CCggaaatcataaagaacagatttttctccattttaacatcctccgctacaatgccaacgctgcatatatgccaccgatttttttttccaaacaaaatctaagggatttaccctcgatgataatgccaatttcctgatacacacccgtaatcaaaccgaagtgaggtgaagtcagacgggctggacatatattcagatgaccaggttatttaccaaaacctcaacattatcataa
gi|8 : aagctCC--CCCCCAATATAATGCCACTCTCGTTTACTGCCTACAAATCCTTAA-----GAATGTT-------A----AAACTCCTGC-TT-TAATGCCAACCCCA-C--ATAACA------CCATATACCACCAA--TTTTTA----CAAACAA
gi|6 : ACCCACACTTATTGCCAGCAAATCC-TAACGAACAA--ATTTCTCTCCATGTTAAAA-CCCCCGTTATAATGCT-ACCCCAGC--TTAATGCTATTACCATGTGCCACT-AATTTTTT-----CA----AAGAAATGATCAAATGTTA
gi|4 : --GTT-------A----ACAC-CC--CGTTTTAATGCCAACCTCG-CGCATAATG------CCATAT---ATC-A--T------------------AAAT-------TGTTACAGGGTTTACGACCGATAATAATGTCAATTATGATGAATTGTCTAACACCCATCGTTAATTACACCTGTACTTTGAAAGAGGTGAGGTGAAATGTG--CCAG-AC----TGGCCAAGGTGT
gi|3 : aatcctgaagaactgatccccccatTT-------A----ACAT-CCTCCGCTACAATGCCAACGCTG-C--ATA------------TATGCCACCGA--TTTTTTTTTCCAAACAAAA------TCTAA------GGGATTTACCCTCGATGATAATGCCAATTTC----------CTGATACACACCCGTAATCAAACC------------GAAGTGAGGTGAAGTCAGA-C--GGGC----TGGAC-ATATATTCAGATGACCAGG---------------TTATTTACCA-AAACCTCAAC-ATTATCATAAattgacgtgaccatgttaattgtc
gi|2 : acagtgttccctcgatatactgcaccccctggaaatcataaagaacagatttttctccattATGTTACAGAGTTTACCCTTGATAATAATGCCAATTAC----------CTAACACCTATCTGTAATCCCACTTGTACTTTGAGAGAGCTGAAATAAAGTCTG-------ACAGGGTGAACATGGTATTCAGGGGGCCAAT-ATAACTACTCATAATTACTT-AAATAAAATTCGAA-ATGATG-GAAATGTTGATACAAAATGTAGCC-CAA------TAAATGACGTTACTGAATTTCTTTCGACTGCTAGCTT-ATTTGTCAGTAATGGTGAAGTTATATTGCCATCCCCACAATATTG---------------CC---------------AA-----AATTGGTCTTGCA--CAAAAGTTGTCAATATATTAAGGGAGCACTGTA
gi|9 : TAGGGTTTACCCTCAGTAATAATGCC-----------------TAACACCCCTCCGTAATCACGCCTGTAATTTGAGAGAGGTGTGGTGAAGTGTGACG--GT-T----TGGACA
gi|7 : AGGGTTTTCCTTCTATAATAATGCCA-CTAC----------CTAACACCCATCCAT-------------CATTGAGAGATTTGAGGTGAAGTGTG--C--GTAT----TGGACAAGGTATGCAGGCGGCCAGGAATAAATTC------CTACTTAAA
gi|5 : gccaaAAGTATTATT-TTAATGTGTGTACAGAATGTAAACATAATTGCAT--GACCATATAACTGGCTTTCTTTTGGCTG-TGAAGTAAATTCTTAGTATTGGTGAATTT-G-TT------------ATATTGTCACCCACCCCCCACCC---------------CA-----AA--GGTCTTGGA--CAAAAGTTAGCAACATATTCAGGGAGCACTGCA
gi|10 : TTAGTAATGACGAAGTC-G-TT------------ATATTG---------------CCAGCCCCTTTATTGTCCA-----TATTGTTCTTGGA--CAAAAGTTGGCCTTATAACAAGGGAGCACTt
gi|12 : ttTC-T-CT------------ATAATG---------------CC---------------AA-----AAT-GGT--TGGAACCAAAAGCTGGCGATATATCGAGGGAACACTGTA
gi|13 : tataacgccaccc-TC------------ATATTG---------------CCACAGC----------CACCCTCACTTGGTCTTGTA--CAAAAGTTGGCAATATATAGAGGGAGCACTGTA
gi|15 : gATTG---------------AC---------------CA-----AATTGATCTTGAA--AAAATGTTTGCAATATACCACAGGAGC
gi|14 : TGGCAATATATCAAGGGAGCACTGTA
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 4444444444444 1 3333333333333333333333333333333333 2 11 222222222 11 444444444444444444444444444 2222222222 1 11 66666666666666666 11 4444444 222222 222222222 777777777777777777777777777777777777777
lowQualScore : 2 2 2222222222222 8 2 8 2 1 7777777777777777777777777777777777 1 0 1 11 666666666 44 999999999999999999999999999 0 1 3 9999999999 2 2 3 55 1 999 11 0 1 66666666666666666 3 7 1 0 1 11 222 1 88 1111111 0 77 44 1 11 0 0 6 0 22 7 1 1 2 777777 2 222222222 111111111111111111111111111111111111111 1 77 2
lowQualScore : . . ............. . . . . . .................................. . . . .. ......... .. ........................... . . . .......... . . . .. . ... .. . . ................. . . . . . .. ... . .. ....... . .. .. . .. . . . . .. . . . . ...... . ......... ....................................... . .. .
lowQualScore : 8 8 4444444444444 5 2 0 5 3 1111111111111111111111111111111111 0 4 4 00 666666666 66 555555555555555555555555555 2 0 2 2222222222 5 5 2 88 3 555 00 6 4 77777777777777777 2 3 0 7 0 00 777 0 00 3333333 7 33 33 0 77 7 7 7 7 00 3 0 0 0 555555 0 999999999 777777777777777777777777777777777777777 4 99 7
consensus : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTTAA-GAAC-AA----C-C-----G-------------TTAAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGAAT-AA-T--T-C----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAAN-----TTGTTAT---------ATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Reference ( family-1220 ) : TACAGTGCTCCCTCGATATATCGCCCCC---TCC--G-TTATAATGCCACCCTCGCTTATTGCCTGC-AAATCCTTAACGAAC-GA------------G-------------TTAANACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAAT--TC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGTACTGGACAAG--GTATTCAGGCGGCCAGG-AT-AA----T-C----TTACTTAAAATAAANCTCGANATTAT-NTAAATGTNNGTACAGAATGTAGNCACAATTGCATTAGACGACGTNACTGGNTTTCTTTCGGCTGCTGGNNTAANTTNTTAGTAATGGCGAAG-----TCGTTAT---------ATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
gi|1 : TACAGTGTTCCCTCAATATACTGCCCCC---TCCCCA-TTATAATGCCACTCCCACTTATTGCCTAC-AAATC--TAA------AA------------G-------------TTAAAAACCTACATTATAATGCTAACCCCAC--ATAATG------CCATATGCCACC-ATTTTT-----CAAACGAAGAAATGGTC-AAATGTTATAGGGTTTTCCTTCTATAATAATGCCAATTAC----------CTAATGCCCATCCGTAATCACACCTGTACATTGAGAGAGGTGAGGTGAAGTGTG-TGTATTGGACAAG--GTATGCAGTCAGCCAGGAATAAA----TGC----TTACTTAAAATAAAACTCAAGATTAT-CTAAATGTCCATACAGAATTTAGCCATAAT--AATTAAATTAAATGACTGAATTTCTTTTGACTGCTAGATTAAATCCTCAGTAATGGTGAAT-----TTTTTAT---------ATTG---------------CC---------------CA-----AATTGGTCTTGGA--CGAAAGTTGGCAATATATCAAAGGAGTACTGTA
gi|10 : TTTTAGTAATGACGAAG-----TCGTTAT---------ATTG---------------CCAGCCCCTTTATTGTCCA-----TATTGTTCTTGGA--CAAAAGTTGGCCTTATAACAAGGGAGCACT
gi|11 : TACAGTGTTCCCTCGATGTATTGCCCCCAATTAC--AATTATAATGCCACCCTCGCTTATTGCCTGCAAAATCCTTAA-GAA
gi|12 : aTAT---------AATG---------------CC---------------AA-----AAT-GGT--TGGAACCAAAAGCTGGCGATATATCGAGGGAACACTGTA
gi|13 : tataacgccaccctctcGTCAT---------ATTG---------------CCACAGC----------CACCCTCACTTGGTCTTGTA--CAAAAGTTGGCAATATATAGAGGGAGCACTGTA
gi|14 : TACAGTGCTCCCTTGATATATTGCCA-----TCG--G-TTATAATGCCACCCCTACTTATTGCCTG
gi|15 : atg---------ATTG---------------AC---------------CA-----AATTGATCTTGAA--AAAATGTTTGCAATATACCACAGGAGCAa
gi|16 : ACAGTGTTCCCTCAATATATCGCC
gi|2 : aagctA-TGTTACAGAGTTTACCCTTGATAATAATGCCAATTAC----------CTAACACCTATCTGTAATCCCACTTGTACTTTGAGAGAGCTGAAATAAAGTCTGACAGGGTGAACATG--GTATTCAGGGGGCCAAT-AT-AACTACT-CATAATTACTT-AAATAAAATTCGAAATGAT-GGAAATGTTGATACAAAATGTAGCC-CAA------TAAATGACGTTACTGAATTTCTTTCGACTGCTAGCTT-ATTTGTCAGTAATGGTGAAGTTATATTGCCATCCCCACAATATTG---------------CC---------------AA-----AATTGGTCTTGCA--CAAAAGTTGTCAATATATTAAGGGAGCACTGTA
gi|3 : ACAGTGTTCCCTCGATATACTG------------------------CACCC----------CCTGG-AAATCAT-AAAGAAC--A------------GATTTTTCTCCATTTTAACATCCTCCGCTACAATGCCAACGCTGC--ATA------------TATGCCACCGATTTTTTTTTCCAAACAAA---AT--CT-AA-------GGGATTTACCCTCGATGATAATGCCAATTTC----------CTGATACACACCCGTAATCAAACC------------GAAGTGAGGTGAAGTCAGACGGGCTGGAC-AT--ATATTCAGATGACCAGG-----------------TTATTTACCA-AAACCTCAACATTATCATAA
gi|4 : AATCCTGAA-GAACTGATCCCCCCAT---G-------------TTAACACCC--CGTTTTAATGCCAACCTCGCGCATAATG------CCATATATCAT----------------------AAAT--T------GTTACAGGGTTTACGACCGATAATAATGTCAATTATGATGAATTGTCTAACACCCATCGTTAATTACACCTGTACTTTGAAAGAGGTGAGGTGAAATGTGCCAGACTGGCCAAGGTGTATTGACGTGACCATG-TT-AA----T-
gi|5 : ATTAT-TTTAATGTGTGTACAGAATGTAAACATAATTGCAT--GACCATATAACTGGCTTTCTTTTGGCTG-TGAAGTAAATTCTTAGTATTGGTGAAT-----TTGTTAT---------ATTGTCACCCACCCCCCACCC---------------CA-----AA--GGTCTTGGA--CAAAAGTTAGCAACATATTCAGGGAGCACTGCAtgtc
gi|6 : aagtACCCACACTTATTGCCAGC-AAATCCT-AACGAAC-AAATTTCTCTCCATG-------------TTAAAACCC-CCGTTATAATGCTACCCCAGC--TTAATGCTATTACCATGTGCCACTAATTTTT-----T---CAAAGAAATGATCAAA-TGTTAt
gi|7 : AGGGTTTTCCTTCTATAATAATGCCA-CTAC----------CTAACACCCATCC---ATCA----------TTGAGAGATTTGAGGTGAAGTGTG-CGTATTGGACAAG--GTATGCAGGCGGCCAGGAAT-AAAT--T-C----CTACTTAAA
gi|8 : gccaaCCCC---CCC--A-ATATAATGCCACTCTCGTTTACTGCCTAC-AAATCCTTAA-GAAT---------------G-------------TTAAAACTC-CTGCTTTAATGCCAACCCCAC--ATAACA------CCATATACCACCAATTTTTA----CAAACAA
gi|9 : AGGGTTTACCCTCAGTAATAATGCC-----------------TAACACCCCTCCGTAATCACGCCTGTAATTTGAGAGAGGTGTGGTGAAGTGTGACGGTTTGGACA
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 3333333333333 111111111111111111111 11 2 11 222222222 11 55555555555555555555555555 2222222222 1 11 666666666666666 11 4444444 333333333333333 777777777777777777777777777777777777777
lowQualScore : 6666666666666 6 8 2 3 555555555555555555555 11 0 0 1 11 666666666 44 00000000000000000000000000 0 1 3 9999999999 2 2 3 55 1 0 11 0 1 0 3 000000000000000 3 7 0 1 11 555 7 9999999 1 1 1 0 6 7 0 1 666666666666666 111111111111111111111111111111111111111 1 77 2
lowQualScore : ............. . . . . ..................... .. . . . .. ......... .. .......................... . . . .......... . . . .. . . .. . . . . ............... . . . . .. ... . ....... . . . . . . . . ............... ....................................... . .. .
lowQualScore : 6666666666666 3 0 5 7 666666666666666666666 00 6 4 4 00 666666666 66 55555555555555555555555555 2 0 2 2222222222 5 5 2 88 3 3 00 6 4 8 2 222222222222222 2 3 7 0 00 333 3 3333333 0 0 0 7 7 3 2 0 888888888888888 777777777777777777777777777777777777777 4 99 7
consensus : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAAC--A-ATTT-TCTCC------GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGAATAA-----ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Reference ( family-1220 ) : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTTAAGAAC--AA--------CC------GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGAAT-A-----ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
gi|1 : TACAGTGTTCCCTCAATATACTGCCCCC---TCCCCA-TTATAATGCCACTCCCACTTATTGCCTAC-AAATC--TAAAA----------------------GTT--AAAAACCTACATTATAATGCTAACCCCAC--ATAATG------CCATATGCCACC-ATTTTT-----CAAACGAAGAAATGGTC-AAATGTTATAGGGTTTTCCTTCTATAATAATGCCAATTAC----------CTAATGCCCATCCGTAATCACACCTGTACATTGAGAGAGGTGAGGTGAAGTGTG-TGTATTGGACAAG--GTATGCAGTCAGCCAGGAATAA-----ATGC----TTACTTAAAATAAAACTCAAGATTAT-CTAAATGTCCATACAGAATTTAGCCATAATA--ATTAAATTAAATGACTGAATTTCTTTTGACTGCTAGATTAAATCCTCAGTAATGGTGAATTTTT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CGAAAGTTGGCAATATATCAAAGGAGTACTGTA
gi|10 : TTTTAGTAATGACGAAGTCGT-T-------------ATATTG---------------CCAGCCCCTTTATTGTCCA-----TATTGTTCTTGGA--CAAAAGTTGGCCTTATAACAAGGGAGCACT
gi|11 : TACAGTGTTCCCTCGATGTATTGCCCCCAATTAC--AATTATAATGCCACCCTCGCTTATTGCCTGCAAAATCCTTAAGAA
gi|12 : a-T-------------ATAATG---------------CC---------------AA-----AAT-GGT--TGGAACCAAAAGCTGGCGATATATCGAGGGAACACTGTA
gi|13 : tataacgccaccctctcGT-C-------------ATATTG---------------CCACAGC----------CACCCTCACTTGGTCTTGTA--CAAAAGTTGGCAATATATAGAGGGAGCACTGTA
gi|14 : TACAGTGCTCCCTTGATATATTGCCA-----TCG--G-TTATAATGCCACCCCTACTTATTGCCTG
gi|15 : atgATTG---------------AC---------------CA-----AATTGATCTTGAA--AAAATGTTTGCAATATACCACAGGAGCAa
gi|16 : ACAGTGTTCCCTCAATATATCGCC
gi|2 : aagctA-TGTTACAGAGTTTACCCTTGATAATAATGCCAATTAC----------CTAACACCTATCTGTAATCCCACTTGTACTTTGAGAGAGCTGAAATAAAGTCTGACAGGGTGAACATG--GTATTCAGGGGGCC---AAT-ATAACTACTCATAATTACTT-AAATAAAATTCGAAATGAT-GGAAATGTTGATACAAAATGTAGCC-CAA------TAAATGACGTTACTGAATTTCTTTCGACTGCTAGCTT-ATTTGTCAGTAATGGTGAAGTTATATTGCCATCCCCACAATATTG---------------CC---------------AA-----AATTGGTCTTGCA--CAAAAGTTGTCAATATATTAAGGGAGCACTGTA
gi|3 : ACAGTGTTCCCTCGATATACTGC------------------------ACCCCC----------TGG-AAATCATAAAGAAC--AGATTTTTCTCC------ATTTTAACATCCTCCGCTACAATGCCAACGCTGC--ATA------------TATGCCACCGATTTTTTTTTCCAAACAAAA------TC-------TAAGGGATTTACCCTCGATGATAATGCCAATTTC----------CTGATACACACCCGTAATCAAACC------------GAAGTGAGGTGAAGTCAGACGGGCTGGAC-AT--ATATTCAGATGACCAGG------------------TTATTTACCA-AAACCTCAACATTATCATAA
gi|4 : AATCCTGAAGAACTGAT--------CCCCCCATGTT--AACACCC--CGTTTTAATGCCAACCTCGCGCATAATG------CCATATATCAT----------------------AAAT--------TGTTACAGGGTTTACGACCGATAATAATGTCAATTATGATGAATTGTCTAACACCCATCGTTAATTACACCTGTACTTTGAAAGAGGTGAGGTGAAATGTGCCAGACTGGCCAAGGTGTATTGACGTGACCA
gi|5 : ATTAT-TTTAATGTGTGTACAGAATGTAAACATAATTGCAT--GACCATATAACTGGCTTTCTTTTGGCTG-TGAAGTAAATTCTTAGTATTGGTGAATTTGT-T-------------ATATTGTCACCCACCCCCCACCC---------------CA-----AA--GGTCTTGGA--CAAAAGTTAGCAACATATTCAGGGAGCACTGCAtgttaattgtc
gi|6 : aagtACCCACACTTATTGCCAGC-AAATCCTAACGAAC--AAATTTCTCTCCAT----GTT--AAAACCC-CCGTTATAATGCTACCCCAGC--TTAATGCTATTACCATGTGCCACTAATTTTT-----T---CAAAGAAATGATCAAA-TGTTAt
gi|7 : AGGGTTTTCCTTCTATAATAATGCCA-CTAC----------CTAACACCCATCC---ATCA----------TTGAGAGATTTGAGGTGAAGTGTG-CGTATTGGACAAG--GTATGCAGGCGGCCAGGAATAA-----ATTC----CTACTTAAA
gi|8 : gccaaCCCC---CCC--A-ATATAATGCCACTCTCGTTTACTGCCTAC-AAATCCTTAAGAA--------------T------GTT--AAAACTC-CTGCTTTAATGCCAACCCCAC--ATAACA------CCATATACCACCAATTTTTA----CAAACAA
gi|9 : AGGGTTTACCCTCAGTAATAATGCC-----------------TAACACCCCTCCGTAATCACGCCTGTAATTTGAGAGAGGTGTGGTGAAGTGTGACGGTTTGGACA
Alignments
lowQualScore : 3333333333333 8888888888888888 11 2 11 222222222 11 55555555555555555555555555 2222222222 1 11 3333333333333333 11 4444444 333333333333333 777777777777777777777777777777777777777
lowQualScore : 6666666666666 6 8 2 1 2222222222222222 11 0 0 1 11 666666666 44 00000000000000000000000000 0 1 3 9999999999 2 2 3 55 1 0 11 0 1 2 3333333333333333 3 7 0 1 11 555 7 9999999 1 1 1 0 6 7 0 1 666666666666666 111111111111111111111111111111111111111 1 77 2
lowQualScore : ............. . . . . ................ .. . . . .. ......... .. .......................... . . . .......... . . . .. . . .. . . . ................ . . . . .. ... . ....... . . . . . . . . ............... ....................................... . .. .
lowQualScore : 6666666666666 3 0 5 0 4444444444444444 00 6 4 4 00 666666666 66 55555555555555555555555555 2 0 2 2222222222 5 5 2 88 3 3 00 6 4 5 2222222222222222 2 3 7 0 00 333 3 3333333 0 0 0 7 7 3 2 0 888888888888888 777777777777777777777777777777777777777 4 99 7
consensus : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAAC-GAATTTCTCTC-C--GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Reference ( family-1220 ) : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAAC-AA--TTTTCTC-C--GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
gi|1 : TACAGTGTTCCCTCAATATACTGCCCCC---TCCCCA-TTATAATGCCACTCCCACTTATTGCCTAC-AAATC--TAAAA------------------GTT--AAAAACCTACATTATAATGCTAACCCCAC--ATAATG------CCATATGCCACC-ATTTTT-----CAAACGAAGAAATGGTC-AAATGTTATAGGGTTTTCCTTCTATAATAATGCCAATTAC----------CTAATGCCCATCCGTAATCACACCTGTACATTGAGAGAGGTGAGGTGAAGTGTG-TGTATTGGACAAG--GTATGCAGTCAGCCAGGA-ATAA--ATGC----TTACTTAAAATAAAACTCAAGATTAT-CTAAATGTCCATACAGAATTTAGCCATAATA--ATTAAATTAAATGACTGAATTTCTTTTGACTGCTAGATTAAATCCTCAGTAATGGTGAATTTTT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CGAAAGTTGGCAATATATCAAAGGAGTACTGTA
gi|10 : TTTTAGTAATGACGAAGTCGT-T-------------ATATTG---------------CCAGCCCCTTTATTGTCCA-----TATTGTTCTTGGA--CAAAAGTTGGCCTTATAACAAGGGAGCACT
gi|11 : TACAGTGTTCCCTCGATGTATTGCCCCCAATTAC--AATTATAATGCCACCCTCGCTTATTGCCTGCAAAATCCTTAAGAA
gi|12 : a-T-------------ATAATG---------------CC---------------AA-----AAT-GGT--TGGAACCAAAAGCTGGCGATATATCGAGGGAACACTGTA
gi|13 : tataacgccaccctctcGT-C-------------ATATTG---------------CCACAGC----------CACCCTCACTTGGTCTTGTA--CAAAAGTTGGCAATATATAGAGGGAGCACTGTA
gi|14 : TACAGTGCTCCCTTGATATATTGCCA-----TCG--G-TTATAATGCCACCCCTACTTATTGCCTG
gi|15 : atgATTG---------------AC---------------CA-----AATTGATCTTGAA--AAAATGTTTGCAATATACCACAGGAGCAa
gi|16 : ACAGTGTTCCCTCAATATATCGCC
gi|2 : aagctA-TGTTACAGAGTTTACCCTTGATAATAATGCCAATTAC----------CTAACACCTATCTGTAATCCCACTTGTACTTTGAGAGAGCTGAAATAAAGTCTGACAGGGTGAACATG--GTATTCAGGGGGCCA--ATATAACTACTCATAATTACTT-AAATAAAATTCGAAATGAT-GGAAATGTTGATACAAAATGTAGCC-CAA------TAAATGACGTTACTGAATTTCTTTCGACTGCTAGCTT-ATTTGTCAGTAATGGTGAAGTTATATTGCCATCCCCACAATATTG---------------CC---------------AA-----AATTGGTCTTGCA--CAAAAGTTGTCAATATATTAAGGGAGCACTGTA
gi|3 : ACAGTGTTCCCTCGATATACTGC------------------------ACCCCC----------TGG-AAATCATAAAGAAC-AGATTTTTCTC-C--ATTTTAACATCCTCCGCTACAATGCCAACGCTGC--ATA------------TATGCCACCGATTTTTTTTTCCAAACAAAA------TC-------TAAGGGATTTACCCTCGATGATAATGCCAATTTC----------CTGATACACACCCGTAATCAAACC------------GAAGTGAGGTGAAGTCAGACGGGCTGGAC-AT--ATATTCAGATGACCAGG----------------TTATTTACCA-AAACCTCAACATTATCATAA
gi|4 : AATCCTGAAGAACTGA--TCCCCCCAT--GTT--AACACCC--CGTTTTAATGCCAACCTCGCGCATAATG------CCATATATCAT----------------------AAAT--------TGTTACAGGGTTTACGACCGATAATAATGTCAATTATGATGAATTGTCTAACACCCATCGTTAATTACACCTGTACTTTGAAAGAGGTGAGGTGAAATGTGCCAGACTGGCCAAGGTGTATTGACGTGACCA
gi|5 : ATTAT-TTTAATGTGTGTACAGAATGTAAACATAATTGCAT--GACCATATAACTGGCTTTCTTTTGGCTG-TGAAGTAAATTCTTAGTATTGGTGAATTTGT-T-------------ATATTGTCACCCACCCCCCACCC---------------CA-----AA--GGTCTTGGA--CAAAAGTTAGCAACATATTCAGGGAGCACTGCAtgttaattgtc
gi|6 : aagtACCCACACTTATTGCCAGC-AAATCCTAACGAAC-AAATTTCTCTC-CATGTT--AAAACCC-CCGTTATAATGCTACCCCAGC--TTAATGCTATTACCATGTGCCACTAATTTTT-----T---CAAAGAAATGATCAAA-TGTTAt
gi|7 : AGGGTTTTCCTTCTATAATAATGCCA-CTAC----------CTAACACCCATCC---ATCA----------TTGAGAGATTTGAGGTGAAGTGTG-CGTATTGGACAAG--GTATGCAGGCGGCCAGGA-ATAA--ATTC----CTACTTAAA
gi|8 : gccaaCCCC---CCC--A-ATATAATGCCACTCTCGTTTACTGCCTAC-AAATCCTTAAGAAT----------------GTT--AAAACTC-CTGCTTTAATGCCAACCCCAC--ATAACA------CCATATACCACCAATTTTTA----CAAACAA
gi|9 : AGGGTTTACCCTCAGTAATAATGCC-----------------TAACACCCCTCCGTAATCACGCCTGTAATTTGAGAGAGGTGTGGTGAAGTGTGACGGTTTGGACA
Alignments
lowQualScore : 3333333333333 55555555555555 11 2 11 222222222 11 55555555555555555555555555 2222222222 1 11 3333333333333333 11 4444444 333333333333333 777777777777777777777777777777777777777
lowQualScore : 6666666666666 6 8 2 1 66666666666666 11 0 0 1 11 666666666 44 00000000000000000000000000 0 1 3 9999999999 2 2 3 55 1 0 11 0 1 2 3333333333333333 3 7 0 1 11 555 7 9999999 1 1 1 0 6 7 0 1 666666666666666 111111111111111111111111111111111111111 1 77 2
lowQualScore : ............. . . . . .............. .. . . . .. ......... .. .......................... . . . .......... . . . .. . . .. . . . ................ . . . . .. ... . ....... . . . . . . . . ............... ....................................... . .. .
lowQualScore : 6666666666666 3 0 5 0 00000000000000 00 6 4 4 00 666666666 66 55555555555555555555555555 2 0 2 2222222222 5 5 2 88 3 3 00 6 4 5 2222222222222222 2 3 7 0 00 333 3 3333333 0 0 0 7 7 3 2 0 888888888888888 777777777777777777777777777777777777777 4 99 7
consensus : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACGGATTTCTCTCC--GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Reference ( family-1220 ) : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACGAATTTCTCTCC--GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
gi|1 : TACAGTGTTCCCTCAATATACTGCCCCC---TCCCCA-TTATAATGCCACTCCCACTTATTGCCTAC-AAATC--TAAAA----------------GTT--AAAAACCTACATTATAATGCTAACCCCAC--ATAATG------CCATATGCCACC-ATTTTT-----CAAACGAAGAAATGGTC-AAATGTTATAGGGTTTTCCTTCTATAATAATGCCAATTAC----------CTAATGCCCATCCGTAATCACACCTGTACATTGAGAGAGGTGAGGTGAAGTGTG-TGTATTGGACAAG--GTATGCAGTCAGCCAGGA-ATAA--ATGC----TTACTTAAAATAAAACTCAAGATTAT-CTAAATGTCCATACAGAATTTAGCCATAATA--ATTAAATTAAATGACTGAATTTCTTTTGACTGCTAGATTAAATCCTCAGTAATGGTGAATTTTT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CGAAAGTTGGCAATATATCAAAGGAGTACTGTA
gi|10 : TTTTAGTAATGACGAAGTCGT-T-------------ATATTG---------------CCAGCCCCTTTATTGTCCA-----TATTGTTCTTGGA--CAAAAGTTGGCCTTATAACAAGGGAGCACT
gi|11 : TACAGTGTTCCCTCGATGTATTGCCCCCAATTAC--AATTATAATGCCACCCTCGCTTATTGCCTGCAAAATCCTTAAGAA
gi|12 : a-T-------------ATAATG---------------CC---------------AA-----AAT-GGT--TGGAACCAAAAGCTGGCGATATATCGAGGGAACACTGTA
gi|13 : tataacgccaccctctcGT-C-------------ATATTG---------------CCACAGC----------CACCCTCACTTGGTCTTGTA--CAAAAGTTGGCAATATATAGAGGGAGCACTGTA
gi|14 : TACAGTGCTCCCTTGATATATTGCCA-----TCG--G-TTATAATGCCACCCCTACTTATTGCCTG
gi|15 : atgATTG---------------AC---------------CA-----AATTGATCTTGAA--AAAATGTTTGCAATATACCACAGGAGCAa
gi|16 : ACAGTGTTCCCTCAATATATCGCC
gi|2 : aagctA-TGTTACAGAGTTTACCCTTGATAATAATGCCAATTAC----------CTAACACCTATCTGTAATCCCACTTGTACTTTGAGAGAGCTGAAATAAAGTCTGACAGGGTGAACATG--GTATTCAGGGGGCCA--ATATAACTACTCATAATTACTT-AAATAAAATTCGAAATGAT-GGAAATGTTGATACAAAATGTAGCC-CAA------TAAATGACGTTACTGAATTTCTTTCGACTGCTAGCTT-ATTTGTCAGTAATGGTGAAGTTATATTGCCATCCCCACAATATTG---------------CC---------------AA-----AATTGGTCTTGCA--CAAAAGTTGTCAATATATTAAGGGAGCACTGTA
gi|3 : ACAGTGTTCCCTCGATATACTGC------------------------ACCCCC----------TGG-AAATCATAAAGAACAGATTTTTCTCC--ATTTTAACATCCTCCGCTACAATGCCAACGCTGC--ATA------------TATGCCACCGATTTTTTTTTCCAAACAAAA------TC-------TAAGGGATTTACCCTCGATGATAATGCCAATTTC----------CTGATACACACCCGTAATCAAACC------------GAAGTGAGGTGAAGTCAGACGGGCTGGAC-AT--ATATTCAGATGACCAGG----------------TTATTTACCA-AAACCTCAACATTATCATAA
gi|4 : AATCCTGAAGAACTGATCCCCCCAT--GTT--AACACCC--CGTTTTAATGCCAACCTCGCGCATAATG------CCATATATCAT----------------------AAAT--------TGTTACAGGGTTTACGACCGATAATAATGTCAATTATGATGAATTGTCTAACACCCATCGTTAATTACACCTGTACTTTGAAAGAGGTGAGGTGAAATGTGCCAGACTGGCCAAGGTGTATTGACGTGACCA
gi|5 : ATTAT-TTTAATGTGTGTACAGAATGTAAACATAATTGCAT--GACCATATAACTGGCTTTCTTTTGGCTG-TGAAGTAAATTCTTAGTATTGGTGAATTTGT-T-------------ATATTGTCACCCACCCCCCACCC---------------CA-----AA--GGTCTTGGA--CAAAAGTTAGCAACATATTCAGGGAGCACTGCAtgttaattgtc
gi|6 : aagtACCCACACTTATTGCCAGC-AAATCCTAACGAACAAATTTCTCTCCATGTT--AAAACCC-CCGTTATAATGCTACCCCAGC--TTAATGCTATTACCATGTGCCACTAATTTTT-----T---CAAAGAAATGATCAAA-TGTTAt
gi|7 : AGGGTTTTCCTTCTATAATAATGCCA-CTAC----------CTAACACCCATCC---ATCA----------TTGAGAGATTTGAGGTGAAGTGTG-CGTATTGGACAAG--GTATGCAGGCGGCCAGGA-ATAA--ATTC----CTACTTAAA
gi|8 : gccaaCCCC---CCC--A-ATATAATGCCACTCTCGTTTACTGCCTAC-AAATCCTTAAGAATG--------------TT--AAAACTC-CTGCTTTAATGCCAACCCCAC--ATAACA------CCATATACCACCAATTTTTA----CAAACAA
gi|9 : AGGGTTTACCCTCAGTAATAATGCC-----------------TAACACCCCTCCGTAATCACGCCTGTAATTTGAGAGAGGTGTGGTGAAGTGTGACGGTTTGGACA
Alignments
lowQualScore : 3333333333333 55555555555555 11 2 11 222222222 11 55555555555555555555555555 2222222222 1 11 3333333333333333 11 4444444 333333333333333 777777777777777777777777777777777777777
lowQualScore : 6666666666666 6 8 2 1 22222222222222 11 0 0 1 11 666666666 44 00000000000000000000000000 0 1 3 9999999999 2 2 3 55 1 0 11 0 1 2 3333333333333333 3 7 0 1 11 555 7 9999999 1 1 1 0 6 7 0 1 666666666666666 111111111111111111111111111111111111111 1 77 2
lowQualScore : ............. . . . . .............. .. . . . .. ......... .. .......................... . . . .......... . . . .. . . .. . . . ................ . . . . .. ... . ....... . . . . . . . . ............... ....................................... . .. .
lowQualScore : 6666666666666 3 0 5 0 66666666666666 00 6 4 4 00 666666666 66 55555555555555555555555555 2 0 2 2222222222 5 5 2 88 3 3 00 6 4 5 2222222222222222 2 3 7 0 00 333 3 3333333 0 0 0 7 7 3 2 0 888888888888888 777777777777777777777777777777777777777 4 99 7
consensus : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACGGATTTCTCTCC--GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Reference ( family-1220 ) : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACGGATTTCTCTCC--GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
gi|1 : TACAGTGTTCCCTCAATATACTGCCCCC---TCCCCA-TTATAATGCCACTCCCACTTATTGCCTAC-AAATC--TAAAA----------------GTT--AAAAACCTACATTATAATGCTAACCCCAC--ATAATG------CCATATGCCACC-ATTTTT-----CAAACGAAGAAATGGTC-AAATGTTATAGGGTTTTCCTTCTATAATAATGCCAATTAC----------CTAATGCCCATCCGTAATCACACCTGTACATTGAGAGAGGTGAGGTGAAGTGTG-TGTATTGGACAAG--GTATGCAGTCAGCCAGGA-ATAA--ATGC----TTACTTAAAATAAAACTCAAGATTAT-CTAAATGTCCATACAGAATTTAGCCATAATA--ATTAAATTAAATGACTGAATTTCTTTTGACTGCTAGATTAAATCCTCAGTAATGGTGAATTTTT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CGAAAGTTGGCAATATATCAAAGGAGTACTGTA
gi|10 : TTTTAGTAATGACGAAGTCGT-T-------------ATATTG---------------CCAGCCCCTTTATTGTCCA-----TATTGTTCTTGGA--CAAAAGTTGGCCTTATAACAAGGGAGCACT
gi|11 : TACAGTGTTCCCTCGATGTATTGCCCCCAATTAC--AATTATAATGCCACCCTCGCTTATTGCCTGCAAAATCCTTAAGAA
gi|12 : a-T-------------ATAATG---------------CC---------------AA-----AAT-GGT--TGGAACCAAAAGCTGGCGATATATCGAGGGAACACTGTA
gi|13 : tataacgccaccctctcGT-C-------------ATATTG---------------CCACAGC----------CACCCTCACTTGGTCTTGTA--CAAAAGTTGGCAATATATAGAGGGAGCACTGTA
gi|14 : TACAGTGCTCCCTTGATATATTGCCA-----TCG--G-TTATAATGCCACCCCTACTTATTGCCTG
gi|15 : atgATTG---------------AC---------------CA-----AATTGATCTTGAA--AAAATGTTTGCAATATACCACAGGAGCAa
gi|16 : ACAGTGTTCCCTCAATATATCGCC
gi|2 : aagctA-TGTTACAGAGTTTACCCTTGATAATAATGCCAATTAC----------CTAACACCTATCTGTAATCCCACTTGTACTTTGAGAGAGCTGAAATAAAGTCTGACAGGGTGAACATG--GTATTCAGGGGGCCA--ATATAACTACTCATAATTACTT-AAATAAAATTCGAAATGAT-GGAAATGTTGATACAAAATGTAGCC-CAA------TAAATGACGTTACTGAATTTCTTTCGACTGCTAGCTT-ATTTGTCAGTAATGGTGAAGTTATATTGCCATCCCCACAATATTG---------------CC---------------AA-----AATTGGTCTTGCA--CAAAAGTTGTCAATATATTAAGGGAGCACTGTA
gi|3 : ACAGTGTTCCCTCGATATACTGC------------------------ACCCCC----------TGG-AAATCATAAAGAACAGATTTTTCTCC--ATTTTAACATCCTCCGCTACAATGCCAACGCTGC--ATA------------TATGCCACCGATTTTTTTTTCCAAACAAAA------TC-------TAAGGGATTTACCCTCGATGATAATGCCAATTTC----------CTGATACACACCCGTAATCAAACC------------GAAGTGAGGTGAAGTCAGACGGGCTGGAC-AT--ATATTCAGATGACCAGG----------------TTATTTACCA-AAACCTCAACATTATCATAA
gi|4 : AATCCTGAAGAACTGATCCCCCCAT--GTT--AACACCC--CGTTTTAATGCCAACCTCGCGCATAATG------CCATATATCAT----------------------AAAT--------TGTTACAGGGTTTACGACCGATAATAATGTCAATTATGATGAATTGTCTAACACCCATCGTTAATTACACCTGTACTTTGAAAGAGGTGAGGTGAAATGTGCCAGACTGGCCAAGGTGTATTGACGTGACCA
gi|5 : ATTAT-TTTAATGTGTGTACAGAATGTAAACATAATTGCAT--GACCATATAACTGGCTTTCTTTTGGCTG-TGAAGTAAATTCTTAGTATTGGTGAATTTGT-T-------------ATATTGTCACCCACCCCCCACCC---------------CA-----AA--GGTCTTGGA--CAAAAGTTAGCAACATATTCAGGGAGCACTGCAtgttaattgtc
gi|6 : aagtACCCACACTTATTGCCAGC-AAATCCTAACGAACAAATTTCTCTCCATGTT--AAAACCC-CCGTTATAATGCTACCCCAGC--TTAATGCTATTACCATGTGCCACTAATTTTT-----T---CAAAGAAATGATCAAA-TGTTAt
gi|7 : AGGGTTTTCCTTCTATAATAATGCCA-CTAC----------CTAACACCCATCC---ATCA----------TTGAGAGATTTGAGGTGAAGTGTG-CGTATTGGACAAG--GTATGCAGGCGGCCAGGA-ATAA--ATTC----CTACTTAAA
gi|8 : gccaaCCCC---CCC--A-ATATAATGCCACTCTCGTTTACTGCCTAC-AAATCCTTAAGAATG--------------TT--AAAACTC-CTGCTTTAATGCCAACCCCAC--ATAACA------CCATATACCACCAATTTTTA----CAAACAA
gi|9 : AGGGTTTACCCTCAGTAATAATGCC-----------------TAACACCCCTCCGTAATCACGCCTGTAATTTGAGAGAGGTGTGGTGAAGTGTGACGGTTTGGACA
blockSeqs : CCAATTACAAT G A C T AAATTTCTCTCCAT TT T A GC ATGCTATTA CG TCAAAGAAATGATCAAA G A GATGAATTGT G C T CT A GT G G ATATAACTACTCATAA A T A CA TGA A TTGCAT G C T C A G ATTGCCATCCCCACA CCAGCCCCTTTATTGTCCA T AC A
blockSeqs : CCCCCAA A . A A AGATTTTTCTCC . . T . ATG TA TTTTCCAAACAAAATC G A . G A T CT A . T G AATAAATTC A . C G GTG . T C T A . . G T TCACCCACCCCCCACCCCA T . G
blockSeqs : TCGGT A . C G TGATCCCCCCAT . . A . ACA CA AAAT G A . T C T AT C . T . . . T T T CCACAGCCACCCTC T . G
blockSeqs : . G . C A G . . T . . . T . . G C . . A . C C CCAA T . A
blockSeqs : . C T A . . . . . . . T ACCA . . A
blockSeqs : CCAA . . C
blockSeqCons : CCC********** NGATCCCCCC**** CG
originalCons : TACAGTGTTCCCTCGATATATTGCCCCC---TCC--A-TTATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACGGATTTCTCTCC--GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
finalCons : TACAGTGTTCCCTCGATATATTGCCCCCC----------TATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACNGATCCCCCC----GTT--AAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Alignments
lowQualScore : 777777777777777 888888888888888888 2 11 222222222 11 55555555555555555555555555 2222222222 1 11 3333333333333333 11 4444444 333333333333333 777777777777777777777777777777777777777
lowQualScore : 888888888888888 6 8 2 1 333333333333333333 0 0 1 11 666666666 44 00000000000000000000000000 0 1 3 9999999999 2 2 3 55 1 0 11 0 1 2 3333333333333333 3 7 0 1 11 555 7 9999999 1 1 1 0 6 7 0 1 666666666666666 111111111111111111111111111111111111111 1 77 2
lowQualScore : ............... . . . . .................. . . . .. ......... .. .......................... . . . .......... . . . .. . . .. . . . ................ . . . . .. ... . ....... . . . . . . . . ............... ....................................... . .. .
lowQualScore : 666666666666666 3 0 5 0 888888888888888888 6 4 4 00 666666666 66 55555555555555555555555555 2 0 2 2222222222 5 5 2 88 3 3 00 6 4 5 2222222222222222 2 3 7 0 00 333 3 3333333 0 0 0 7 7 3 2 0 888888888888888 777777777777777777777777777777777777777 4 99 7
consensus : TACAGTGTTCCCTCGATATATTGCCCCC--------T------TATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACAGA--T----CTCCCCATGTTAAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
Reference ( family-1220 ) : TACAGTGTTCCCTCGATATATTGCCCCC--------C------TATAATGCCACCCCCGCTTATTGCCTGC-AAATCCTNAAGAACNGA--T----CCCCCC--GTTAAAACCCTCCGTTATAATGCCAACCCCGC--ATAACG------CCATATGCCACCGATTTTT-----CAAACAAAGAAATGGTC-AA-TGTTACAGGGTTTACCCTCGATAATAATGCCAATTAC----------CTAACACCCATCCGTAATCACACCTGTACTTTGAGAGAGGTGAGGTGAAGTGTGACGGATTGGACAAG--GTATTCAGGCGGCCAGGA-ATAA--ATTC----TTACTTAAAATAAAACTCGANATTAT-NTAAATGTNCGTACAGAATGTAGCCATAAT---ATTAAATNANATNACTGAATTTCTTTCGACTGCTAGATTAAATTCTCAGTAATGGTGAANTTGT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CAAAAGTTGGCAATATATCGAGGGAGCACTGTA
gi|1 : TACAGTGTTCCCTCAATATACTGCCCCC--------TCCCCATTATAATGCCACTCCCACTTATTGCCTAC-AAATC--TAAAA--------------------GTTAAAAACCTACATTATAATGCTAACCCCAC--ATAATG------CCATATGCCACC-ATTTTT-----CAAACGAAGAAATGGTC-AAATGTTATAGGGTTTTCCTTCTATAATAATGCCAATTAC----------CTAATGCCCATCCGTAATCACACCTGTACATTGAGAGAGGTGAGGTGAAGTGTG-TGTATTGGACAAG--GTATGCAGTCAGCCAGGA-ATAA--ATGC----TTACTTAAAATAAAACTCAAGATTAT-CTAAATGTCCATACAGAATTTAGCCATAATA--ATTAAATTAAATGACTGAATTTCTTTTGACTGCTAGATTAAATCCTCAGTAATGGTGAATTTTT-T-------------ATATTG---------------CC---------------CA-----AATTGGTCTTGGA--CGAAAGTTGGCAATATATCAAAGGAGTACTGTA
gi|10 : TTTTAGTAATGACGAAGTCGT-T-------------ATATTG---------------CCAGCCCCTTTATTGTCCA-----TATTGTTCTTGGA--CAAAAGTTGGCCTTATAACAAGGGAGCACT
gi|11 : TACAGTGTTCCCTCGATGTATTGCCCCCAATTACAAT------TATAATGCCACCCTCGCTTATTGCCTGCAAAATCCTTAAGAA
gi|12 : a-T-------------ATAATG---------------CC---------------AA-----AAT-GGT--TGGAACCAAAAGCTGGCGATATATCGAGGGAACACTGTA
gi|13 : tataacgccaccctctcGT-C-------------ATATTG---------------CCACAGC----------CACCCTCACTTGGTCTTGTA--CAAAAGTTGGCAATATATAGAGGGAGCACTGTA
gi|14 : TACAGTGCTCCCTTGATATATTGCCATCGG------T------TATAATGCCACCCCTACTTATTGCCTG
gi|15 : atgATTG---------------AC---------------CA-----AATTGATCTTGAA--AAAATGTTTGCAATATACCACAGGAGCAa
gi|16 : ACAGTGTTCCCTCAATATATCGCC
gi|2 : aagctA-TGTTACAGAGTTTACCCTTGATAATAATGCCAATTAC----------CTAACACCTATCTGTAATCCCACTTGTACTTTGAGAGAGCTGAAATAAAGTCTGACAGGGTGAACATG--GTATTCAGGGGGCCA--ATATAACTACTCATAATTACTT-AAATAAAATTCGAAATGAT-GGAAATGTTGATACAAAATGTAGCC-CAA------TAAATGACGTTACTGAATTTCTTTCGACTGCTAGCTT-ATTTGTCAGTAATGGTGAAGTTATATTGCCATCCCCACAATATTG---------------CC---------------AA-----AATTGGTCTTGCA--CAAAAGTTGTCAATATATTAAGGGAGCACTGTA
gi|3 : ACAGTGTTCCCTCGATATACTGC----------------------------ACCCCC----------TGG-AAATCATAAAGAACAGA--TTTTTCTCCAT--TTTAACATCCTCCGCTACAATGCCAACGCTGC--ATA------------TATGCCACCGATTTTTTTTTCCAAACAAAA------TC-------TAAGGGATTTACCCTCGATGATAATGCCAATTTC----------CTGATACACACCCGTAATCAAACC------------GAAGTGAGGTGAAGTCAGACGGGCTGGAC-AT--ATATTCAGATGACCAGG----------------TTATTTACCA-AAACCTCAACATTATCATAA
gi|4 : AATCCTGAAGAACTGA--T----CCCCCCATGTTAACACCC--CGTTTTAATGCCAACCTCGCGCATAATG------CCATATATCAT----------------------AAAT--------TGTTACAGGGTTTACGACCGATAATAATGTCAATTATGATGAATTGTCTAACACCCATCGTTAATTACACCTGTACTTTGAAAGAGGTGAGGTGAAATGTGCCAGACTGGCCAAGGTGTATTGACGTGACCA
gi|5 : ATTAT-TTTAATGTGTGTACAGAATGTAAACATAATTGCAT--GACCATATAACTGGCTTTCTTTTGGCTG-TGAAGTAAATTCTTAGTATTGGTGAATTTGT-T-------------ATATTGTCACCCACCCCCCACCC---------------CA-----AA--GGTCTTGGA--CAAAAGTTAGCAACATATTCAGGGAGCACTGCAtgttaattgtc
gi|6 : aagtACCCACACTTATTGCCAGC-AAATCCTAACGAACAAATTT----CTCTCCATGTTAAAACCC-CCGTTATAATGCTACCCCAGC--TTAATGCTATTACCATGTGCCACTAATTTTT-----T---CAAAGAAATGATCAAA-TGTTAt
gi|7 : AGGGTTTTCCTTCTATAATAATGCCA-CTAC----------CTAACACCCATCC---ATCA----------TTGAGAGATTTGAGGTGAAGTGTG-CGTATTGGACAAG--GTATGCAGGCGGCCAGGA-ATAA--ATTC----CTACTTAAA
gi|8 : gccaaCCCCC--------CAA----TATAATGCCACTCTCGTTTACTGCCTAC-AAATCCTTAAGAAT------------------GTTAAAACTC-CTGCTTTAATGCCAACCCCAC--ATAACA------CCATATACCACCAATTTTTA----CAAACAA
gi|9 : cAGGGTTTACCCTCAGTAATAATGCC-----------------TAACACCCCTCCGTAATCACGCCTGTAATTTGAGAGAGGTGTGGTGAAGTGTGACGGTTTGGACA