lowQualScore : 111111111111 111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 33333333 33333 1111111 333333333333 1111 111111 333333333333333333333333333333333333 111111111 22222 111 444444444444444 1111 44444 1111 1111111 1111 11111111 22222222 2 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 111111111111 44444444444444444 1 1
lowQualScore : 99 3 2 99999999 6 77777 66 4 3 6666666 777777777777 4 8888 3 3 1 3 6666 333333 000000000000000000000000000000000000 3 2 777777777 44444 1 111 7 9 66 777777777777777 6 88 5 6666 0 4444 3 88888 2222 0 0 5 8888888 2222 44444444 55555555 7 5 0 0 5 111 4 9 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 66 4 0 66 000 77 555555555555 5 66 00000000000000000 5 5
lowQualScore : .. . . ........ . ..... .. . . ....... ............ . .... . . . . .... ...... .................................... . . ......... ..... . ... . . .. ............... . .. . .... . .... . ..... .... . . . ....... .... ........ ........ . . . . . ... . . . ............................................................................................... .. . . .. ... .. ............ . .. ................. . .
lowQualScore : 22 3 2 22222222 6 99999 11 1 0 0000000 777777777777 0 7777 6 6 2 6 5555 333333 000000000000000000000000000000000000 0 7 888888888 77777 0 111 0 8 66 000000000000000 0 88 0 8888 8 3333 7 88888 1111 7 7 6 6666666 1111 00000000 33333333 3 7 1 0 0 222 0 0 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 99 4 4 99 444 99 222222222222 1 99 00000000000000000 0 0
consensus : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----AC--TCATCTTGGCGATATAC------GGATTGATACA--T-T-------GTC-TATTA---AA-T-TACGATACCCGA-CAT-A--GCG-----TTTTCCAAAAAAAATA-------ATAA-TT---CGAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGCCTA-GTAGAAAATGAAN-GTAGAAC-----N---A----AACAAAAA-ATGGCGGACTACGTAACGTAACTTTCGACTGGAAGCAAGTCGGGGAAATGGGAGAG--TTTGGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA---AN---AAACATCG-T-TT---TCTTAA-GAAGAATTTGTGAAGTT-TTT-G-GAGCNTCGTGAGATCTATTTTATTNTAGTCAAGAAACTAA-CTGAA----GTG---------CGAGTTGAATAAATTT--------AA--TCTTTTTTTC------TATAGNTTT--T-ATTGATATGCAA--AGTA--TCACG--ATATGTATCGTATCGT----G---TGTCAAATAT--CGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
Reference ( gi|1 ) : TAAGGGTGG--GGTGATCCATCGCGGCACTGATACATCGTGAC----AC--TCATCTTAACAATATAC------AGATTGATACAACTTTGTCAA--GTC-TATTC---AA-T-TACGATACCCGA-CAT-A--GCA-----TTTTCCAAAAAAAATA---AAAAATAA-TT---TGAACACTACAAGTTGGATAT---------TTT----CAGTCTGCCTA-GAAGAGAGTGAAA-GTAGAAC-----CT--A----AATAAAAA-ATGGCAGACTACATAACGTAACTTTCAACTGGAAGCAAGTCAGGGAAATGGGAGAAT-TTTGGCTT----GCCATTCTACAAAAGTGAA-------AATGGTG----TA---AG---AAACATCA-T-TT---TCTTGA-GAAGAATTTGTGAAG-T-TTT-G-GAGCATCGTTAGATCTATTTTATTATAGTCTAAAACCTTA-CTGAA----GTG---------CGAGTTGAATCAATTT--------GA--TTTTTTTTCCC--TTTTATAGGTTT--T-ATTGATATGCAA--AGTA--ACACG--ATATGTATCGTATCGT----G---TGTCAAACAT--CGTGATAC-----------------ATATCGGTTCCGCTACAAAGGGTA
gi|6 : TAAGGGTGG--GACGATCCATTGGTGCACTGATGCATCGTTAT----ACGGGCATCTTGGCGAAATAT------GGATCGATGCA--T---------GTC-TATTA---AA-T-TATGATACCGGA-CATAA--GCATAATGTCTTCCAAAAAATATA-----------------TGAGCATCACAAGTCAGGTAT---------TTT----TAGTCTACTTA-GAA---AATGAAC-ATAGAAC-----A---A----AATAAA
gi|4 : ttagtgtgtgctatagatatTAAGGGTGA--GGCGATCCATGGGTGCACCAATACATCATGATACTAAC--TCCTTTTGGCGATATGC------GGATCGATACA--T---------GCC-CATTT---AA-TATACGATA-------AT-A--GCGT----TTTTCCACATACAAAA---AAAAAGAAGTT---T--------CAAGTCGGATAT---------ATT----TAGTCTGCGTA-GAAGAAAATTAAC-ATAGAAtggtgtaataagcatcatctttctcaagaagagtttgtgaagtttttggagcttcatgagataataatcattgaatttgaaatctttttttctagttttgattgcaaagtatcacgatatatatattgtatgatgtgtcaagtattgtgat
gi|3 : TAAGGGTGG--GACGGTCCATCG--------GTGCATCGTGAT----AC--TCATGTTTACAATATAC------GGATTGAT-CGA---TA-CAT--GTC-TATTTAAAAA-T-CATGATGCCCCA-CAT-A--GCG-----TTTTCC---AAAAGT--------ATA-------CGAATGTCACAAGTCGAGTAT---------TTTTAGCTAGTCCACCTA-TTAGGAAATGAAA-G--G--------CTGCA----AACCAAAA-ATGaaaaggggtttggcttgcgattctacaaaagtgtaaatagggtaataaacattatctttctcaagaacaatttgtaaagtctttggagctttacgagatacatgtaaaaataactaaattttatatcttgtttctagtttttattggttcgcagagtatcacgatatgcatcgtatgtcaaatatgatacgtatcgatttggagagaaagggtatcgtcccacccct
gi|7 : tagtattgttgcagaTAAGGGTGG--GATGATCCATTGGTGCACCAATGCATCATGAT----AC--TCATCTTGGCGATAGAT------GGATAGATATA--T---------ATC-TATTT---AA-T-TATGATATCCTA--AT-A--ATG-----TTTTCTAAatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|10 : TAAGGGTTGAAGATGATCCAATGGTGCAACGATGCATCACGATCGATAC--TCATCTTGATGACATAT------GGATTGATACATGTCTATATA--G---TATTA---AATT-TACGATATCATG-CAT-A--GTG-----TTTTACCAAAAATATA---A--------------GGACATGACAAAGTGGATAT---------CTA----AAGTCCACCTA-GTTGAAA--AAAATGTAGAAttatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattcgactttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|2 : taatatgtggtaatagaAAGGATGG--GATGATCCATCA--------GTCCATTGTGAT----AC--TCTTCTTGATGATATAT------AGATTGATACAA-----------GTC-TATCA---AA-T-TATGACACCTGA-CAT-A--GCA-----TTTTC--------AT---------TAA-TTATACGATCATCACAAGTCGGGTAT---------TTT----TAGATTGCCTA-GTAGAAAATAAAA-GCAGAGCAGAGATT--ATAGAAACAAAAA-ATGGCAGACAACTTAATGTAACTTTCAACTAGAAGCAAGTCAAG-AAATAAGAGG---TTTGGCTT----GTCATTCTATGAAAGTGAA-------AAAGGTG----CA---AG---AAACATCG------------AA-GTAGAATTTGTGAAG-T-TTT-TCGAGCATCGTTAGATCTATTTTA-----------AAC--TAGCTGAT----GCA---------CAGGTTGAATAAATTTAAAAAAAAAA--TTC---------------TAGTTTT--T-ATTAATATGCAA--AGTATCCCACG--ATATGTATCATGTCAT----G---TGTCAAATAT--CATGATACGTAATGTATCATGTCATGTATCAGTTCAGCTAGAAAGGGTAa
gi|5 : GTGGGAC-GATGTATCATGAT----AC--TCATCTTAATGATATAT------GGATTGATACAA-----------GTC-TGTTA---AA-T-TGTGATACCTGA-CAT-----CA-----TTTTACAAAAA---TA--------TA-------CGAACATCACAAGCCGGGTAT---------TTT----TTCTCCGCTTTTGTAGAAAATGAGA-GTAGAAC-----TA--A----AATAAAAA--TGGCAGACTACATAACGTAATATTTGACTGGAAGC--------GAAATTGGAGAGG-TTTTGCTT----GC-ATTCTGCAATAGTGAA-------GATGGTG----TA---AG---AAACATTA-T-T-----CTTAA-GAAG------------T-TCTAG-GAGCATCGTTAGATCTGTTTTATTGTAGTCAAGAAACTAG-CTGAA----GTG---------CAAGTTGAATAAATTTAA------AA--TTTTTTGTTTT--TCTCA-AGCTTT--T-ATTGATATGCAA--AGTA--TCAttgtcccatccct
gi|9 : aggGTACCAATTCATCATGATCGATAC--TCATCTCGGCGATATAC------GGATTAATACA------T-----GTT-TATTA---AA-T-TACGATACCCGA-CAT-T--GCG-----TTTTC---AAAAAGT-----------A-TT---CAAATGTCACAAGTCGGGTATCAGTACGTATTTG---TGGCCCGTCTA-GTAGAAAATGAAT-GTAGAGC-----AA--A----AACAAt
gi|8 : gt--TTATCTTAGCGATATAC------GGATTGATACA----TG------AT--TATTG---AA-T-GACGATACCCGA-CAT-A--GTG-----TTTTCCAAA---------------TA--TC---TGAATTTCACACGTCGGGTAT---------TTT-----AGTCCGCCTA-TAAGAAAATGAAA-GTAGGG----------G----GA-AAAAC-ATGGCGGACTGCGTAACAAAATT---GACTAGAAGCAAGTCTGGGAAATGGGAAAGG-TCTAGCTT----GCCATT-TATGGAAGTGAAAACCATTAACAGTG----TA---AG---AGACATCA-T-TT---CTTTTATAAAGAATTTCTGAAGTT-TTT-G-GAGCACTGTGATATTTGTTTTATTCTAGggcttggtttggcgttctacgaaagtgtaaatggtgcacatgataaacattgcctttcttaagaagaattgtgaagttttttgatcttcatgagata
gi|11 : aagggtgggacaaaaATCTTGGCAATATACCTATATGGGTTGATACA----TGTCAATTGCCGTA------AA-T-TGCAATACCTGG-CAA-A--TTG-----TTTTCCCCAAAAAATATATGAACATAA-TTA--AGAACAC-ATTAGTTGctggaccgagtgatatttt
gi|13 : ---AA-T-TATGATAACCGATCAT-AACGCA-----TTTTCC--------------AAAATTA-TA---CAAACGTCACAATTCAGGTAT---------TTT----TAGTCCGCCTA-CTAGAAAATTAAT-GCATAAC-----A---A----AATAttgtttatttagcaa
gi|7 : T--A----AAAAAAAACATGGTGGACTACGTAACATAACTTTTGACTGGAAGCAAGTCGGGAAAATGAGA--------GGCTT----GCCATTCGACggaggtttggcctaat
gi|3 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggGCAAACCAA--AAATG-----ATGTTTGACTTCATTGTCATTCTACGAAATTGTA-------AACAATG----TACATAATTTAAGCATCA-T-CTCTCTTTTAA-GAAGAATTTGTTAAGTT-TTT-G-GAGCTTCATGAGATtttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|4 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctAGAAAAAAGGGG-----TTTGGCTT----GCGATTCTACAAAAGTGTA-------AATAGGG----TA---AT---AAACATTA-TCTT---TCTCAA-GAACAATTTGTAAAG-TCTTT-G-GAGCTTTACGAGATACA------TGTA----AAAA--TAA-CTAAA----TT--------------TT--AT---------------A--TCTTGTTTC---------TAGTTTT--T-ATTGGTTCGCAG--AGTA--TCACG--ATATGCATCGTA------------TGTCAAATA-----TGATAC-----------------GTATCGATTTGGAGAGAAAGGGTAaatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|9 : taagggtgaggcgatccatgggtgcaccaatacatcatgatactaactccttttggcgatatgcggatcgatacatgcccatttaatatacgataatagcgtttttccacatacaaaaaaaaagaagtttcaagtcggatatatttagtctgcgtagaagaaaattaacatTTGGTTT----GGCGTTCTACGAAAGTGTA-------AATGGTGCACATG---AT---AAACATTGCC-TT---TCTTAA-GAAGAA-TTGTGAAGTT-TTT-T-GATCTTCATGAGATtcgtcccacccct
gi|6 : gtgtaccaattcatcatgatcgatactcatctcggcgatatacggattaatacatgtttattaaattacgatacccgacattgcgttttcaaaaagtattcaaatgtcacaagtcgggtatcagtacgtatttgtggcccgtctagtagaaaatgaatgtagagcaaaaacaaggcACAAAA-T--A-------AATGGTG----TA---AT---AAGCATCA-TCTT---TCTCAA-GAAGAGTTTGTGAAGTT-TTT-G-GAGCTTCATGAGA--TA-------ATAATC---------A-TTGAA-----T--------------TTGAA----------------A--TCTTTTTTTC------TA---GTT------TTGAT-TGCAA--AGTA--TCACGATATATATATTGTATGAT----G---TGTCAAGTAT--TGTGATa
gi|7 : ttagtgtgtgctatagatattaagggtgggacgatccattggtgcactgatgcatcgttatacgggcatcttggcgaaatatggatcgatgcatgtctattaaattatgataccggacataagcataatgtcttccaaaaaatatatgagcatcacaagtcaggtatttttagtctacttagaaaatgaacatagaGACTTTATGAAG-T-TTTTG-GAACATCATGATATCTATTTTATTCTGGTAAAGAAACTAG-CTGAACCGAGTGATAATTTACTGAGCTGAATAAATCT--------------TTTTCTCC--------TAGTTTT--TTATTGA
gi|3 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattcTTT--------GACATCTTTTTTTCTAGTTTTAT----TCAAT-ATTGATATGTAATTAGTA--TCACG--ATATGTATTGTATCATACATG---TGTCAAATAT--CGCAATAC-----------------GTATTGATTTGGCTAGAAAGGGTAc
gi|12 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagataacTAGATTT--T-ATTGATATACAA--AGTA--TCACA--ATATGTATCAT---------G---TGTCAGATAT--CGTGATAC-----------------ATAACGATTTGGCTAGAAAGGGTAtggtcccacccc
gi|14 : catgaacatatatttcacatcgttccTT--T-ATTGATATGCAA--AGTA--TCAAG--ATATTTATCGTATTGT----G---TGTTAAAAAT--TGTGATAT-----------------GTATAAGTTCAGCAAGAAAGGGTAtcgtcccaccc
gi|2 : -ACTGATA--CA-----TG--ACATG--ATACATTACGTATCAT----GATATTTGACACATGACATGATAC-----------------ATATCGtagcgatcatcccacccct
gi|15 : aaggatgggatgatccatcagtccattgtgatactcttcttgatgatatatagattgatacaagtctatcaaattatgacacctgacatagcattttcattaattatacgatcatcacaagtcgggtatttttagattgcctagtagaaaataaaagcagagcagagattatagaaacaaaaaatggcagacaacttaatgtaactttcaactagaagcaagtcaagaaataagaggtttggcttgtcattctatgaaagtgaaaaaggtgcaagaaacatcgaagtagaatttgtgaagtttttcgagcatcgttagatctattttaaactagctgatgcacaggttgaataaatttaaaaaaaaaattctagtttttattaatatgcaaagtatcccaTATCATATCGT----G---TGTCAAATAT--CGTCATGC-----------------ATATCGGTTCACCTAGATAGGGTAtcagctagaaagggtattgtcccatccct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTCCATGATATATATACAGTATTTTAAGTTTGGCAACAAGCAA
Alignments
lowQualScore : 2222 111111 333333333333333 11111 11111111 6666666666666666666666666 111111111 1111 333333333333 11 111 1 1111 1111 11111111 1111 1111 2222222222 222222 5555555555555555555555555555555555555555555555555555555555555555555 111111 11111111 44444444444444444
lowQualScore : 77 0 3 3 1 8888 55 000000 7777 777777777777777 55555 3 3 0 3 3 00000000 7777777777777777777777777 0 666666666 2222 4 1 222222222222 11 000 0 3 7777 5 0000 1 99999999 0000 0000 777 4444444444 1 5 7777 444444 4444444444444444444444444444444444444444444444444444444444444444444 66 222222 0 66 66 77 11111111 00000000000000000 0
lowQualScore : .. . . . . .... .. ...... .... ............... ..... . . . . . ........ ......................... . ......... .... . . ............ .. ... . . .... . .... . ........ .... .... ... .......... . . .... ...... ................................................................... .. ...... . .. .. .. ........ ................. .
lowQualScore : 99 4 9 7 9 3333 55 555555 7777 555555555555555 55555 3 3 2 3 3 22222222 8888888888888888888888888 5 000000000 5555 0 0 000000000000 11 000 8 2 5555 0 6666 0 44444444 6666 6666 999 2222222222 0 0 0000 222222 3333333333333333333333333333333333333333333333333333333333333333333 00 888888 4 99 99 99 44444444 00000000000000000 4
consensus : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----AC--TCATCTTGGCGATATAC------GGATT----GATACA----TGTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA-T-CGAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGCCTA-GTAGAAAATGAANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGGAAATGGGAGAG-TTT-GGCTT----GCCATTCTACGAAAGTGNAAAC-------GGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGTC-AGAAACTAGCTGA----AGTG---------CGAGTTGAATAAATTT--AA---------TCTT---TT-TTTC----T-TAG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
Reference ( family-1174 ) : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----AC--TCATCTTGGCGATATAC------GGATT----GATACA---TTGTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TAATTCGAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGCCTA-GTAGAAAATGAANGTAGAAC----------N-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTCGGGGAAATGGGAGAG-TTT-GGCTT----GCCATTCTACGAAAGTGNAAAC-------GGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGTCAAGAAACTAACTGA----AGTG---------CGAGTTGAATAAATTT--AA---------TCTT---TT-TTTC----TATAG-NTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
gi|1 : TAAGGGTGG--GGTGATCCATCGCGGCACTGATACATCGTGAC----AC--TCATCTTAACAATATAC------AGATT----GATACAACTTTGTCAAGTC--TATT-----CAA-T-TACGATACCCGA-CAT-AGC-----A--TTTTCCA-----AAAAAAATAAAAAATAATTTGAACACTACAAGTTGGATAT---------TTT----CAGTCTGCCTA-GAAGAGAGTGAAAGTAGAAC----------CTAAATAAAAAATGGCA---GACTACATAACGTAACTTTCAACTGGAAGCAAGTCAGGGAAATGGGAGAA-TTTTGGCTT----GCCATTCTACAAAAGTGAAAAT-------GGTG----TA----AG--AAACATCA-T-TT---TCTTGAGAAGAATTTGTGAAGTTTT-GGAGCATCGTTAGATCTATTTTATTATAGTCTAAAACCTTACTGA----AGTG---------CGAGTTGAATCAATTT--GA---------TTTT---TT-TTCCCTTTTATAG-GTTT------TATTGATATGCAA--AGTAA--CACG--ATATGTATCGTATCGT----GTGTCAAACATCGTGATAC-----------------ATATCGGTTCCGCTACAAAGGGTA
gi|10 : TAAGGGTTGAAGATGATCCAATGGTGCAACGATGCATCACGATCGATAC--TCATCTTGATGACATAT------GGATT----GATACA----TGTCTATATAGTATT-----AAATT-TACGATATCATG-CAT-AGT-----G--TTTTACC-----AAAAATATAA----------GGACATGACAAAGTGGATAT---------CTA----AAGTCCACCTA-GTTGAAAA-AAATGTAGAA
gi|11 : taatatgtggtaatagaATCTTGGCAATATACCTATATGGGTT----GATACA---T-GTC-------AATTGCCGTAAA-T-TGCAATACCTGG-CAA-ATT-----G--TTTTCCC-----CAAAAAATAa
gi|12 : TAG-ATTT------TATTGATATACAA--AGTAT--CACA--ATATGTATCAT---------GTGTCAGATATCGTGATAC-----------------ATAACGATTTGGCTAGAAAGGGTAtatgaacataattaagaacacattagttgttgtttatttagcaa
gi|13 : catgaacatatatttcacatcgttccAA-T-TATGATAACCGATCAT-AAC-----GCATTTTCCA-----AAA----TTA----TA---CAAACGTCACAATTCAGGTAT---------TTT----TAGTCCGCCTA-CTAGAAAATTAATGCATAAC----------A-AAATAtcgtcccaccc
gi|14 : TT------TATTGATATGCAA--AGTAT--CAAG--ATATTTATCGTATTGT----GTGTTAAAAATTGTGATAT-----------------GTATAAGTTCAGCAAGAAAGGGTAggaggtttggcctaat
gi|15 : TATCATATCGT----GTGTCAAATATCGTCATGC-----------------ATATCGGTTCACCTAGATAGGGTAtagcgatcatcccacccct
gi|2 : AAGGATGG--GATGATCCATCAGT----C----CATTGTGAT----AC--TCTTCTTGATGATATAT------AGATT----GATACA---A-GTC-------TATC-----AAA-T-TATGACACCTGA-CAT-AGC-----A--TTTTC------------ATTAA----TTATACGATCATCACAAGTCGGGTAT---------TTT----TAGATTGCCTA-GTAGAAAATAAAAGCAGAGCAGAGATTATAG-AAACAAAAAATGGCA---GACAACTTAATGTAACTTTCAACTAGAAGCAAGTC-AAGAAATAAGAG-G-TTT-GGCTT----GTCATTCTATGAAAGTGAAAAA-------GGTG----CA----AG--AAACATCG------------AAGTAGAATTTGTGAAGTTTTTCGAGCATCGTTAGATCTATTTT------------AAACTAGCTGA----TGCA---------CAGGTTGAATAAATTT--AAAAAAAAAATTC------------------TAG-TTTT------TATTAATATGCAA--AGTATCCCACG--ATATGTATCATGTCAT----GTGTCAAATATCATGATACGTAATGTATCATGTCATGTATCAGTTCAGCTAGAAAGGGTAaagttccacccc
gi|3 : TAAGGGTGG--GACGGTCCATCGGTGCA--------TCGTGAT----AC--TCATGTTTACAATATAC------GGATTGATCGATACA----TGTC-------TATTTAA--AAA-T-CATGATGCCCCA-CAT-AGC-----G--TTTTCC--------AAAAGT-A----TA---CGAATGTCACAAGTCGAGTAT---------TTTTAGCTAGTCCACCTA-TTAGGAAATGAAAG----GCTG--------C-AAACCAAAAATGATGTTTGACTttgtcccatccct
gi|3 : tagtattgttgcagaG-TTT-GACTTCATTGTCATTCTACGAAATTGTAAAC-------AATG----TACATAATTTAAGCATCA-T-CTCTCTTTTAAGAAGAATTTGTTAAGTTTTTGGAGCTTCATGAGATtcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|3 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatATAACTTT--GACA-------TCTT---TT-TTTC----TA--G-TTTTATTCAATATTGATATGTAATTAGTAT--CACG--ATATGTATTGTATCATACATGTGTCAAATATCGCAATAC-----------------GTATTGATTTGGCTAGAAAGGGTAaatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|4 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagTAAGGGTGA--GGCGATCCATGGGTGCACCAATACATCATGATACTAAC--TCCTTTTGGCGATATGC------GGATC----GATACA----TGCC-------CATT-----TAA-TATACGATA-------AT-AGC-----GT-TTTTCCACATACAAAAAAA-AA----------GAA-GTTTCAAGTCGGATAT---------ATT----TAGTCTGCGTA-GAAGAAAATTAACATAGAAA----------A-AAtggtcccacccc
gi|4 : AAAAGGG---G-TTT-GGCTT----GCGATTCTACAAAAGTGTAAAT-------AGGG----TA----AT--AAACATTA-TCTT---TCTCAAGAACAATTTGTAAAGTCTTTGGAGCTTTACGAGATACA------TGTA------AAAATAAC-----------------------------TAAATTT--TA---------TATC---TTGTTTC------TAG-TTTT------TATTGGTTCGCAG--AGTAT--CACG--ATATGCATCGTA---------TGTCAAATA---TGATAC-----------------GTATCGATTTGGAGAGAAAGGGTAggggtttggcttgcgattctacaaaagtgtaaatagggtaataaacattatctttctcaagaacaatttgtaaagtctttggagctttacgagatacatgtaaaaataactaaattttatatcttgtttctagtttttattggttcgcagagtatcacgatatgcatcgtatgtcaaatatgatacgtatcgatttggagagaaagggtatcgtcccacccct
gi|5 : taagggtgaggcgatccatgggtgcaccaatacatcatgatactaactccttttggcgatatgcggatcgatacatgcccatttaatatacgataatagcgtttttccacatacaaaaaaaaagaagtttcaagtcggatatatttagtctgcgtagaagaaaattaacatagaaGGTGGGACGATGTATCATGAT----AC--TCATCTTAATGATATAT------GGATT----GATACA---A-GTC-------TGTT-----AAA-T-TGTGATACCTGA-CAT---C-----A--TTTTACA-----AAAA---TA-----TA---CGAACATCACAAGCCGGGTAT---------TTT----TTCTCCGCTTTTGTAGAAAATGAGAGTAGAAC----------T-AAAATAAAAATGGCA---GACTACATAACGTAATATTTGACTGGAAGC--------GAAATTGGAGAGGTTT-TGCTT----GC-ATTCTGCAATAGTGAAGAT-------GGTG----TA----AG--AAACAT---T-AT---TCTTAAGAAG-----------TTCTAGGAGCATCGTTAGATCTGTTTTATTGTAGTCAAGAAACTAGCTGA----AGTG---------CAAGTTGAATAAATTTAAAA---------TTTTTTGTT-TTTC----TCAAG-CTTT------TATTGATATGCAA--AGTAT--CAtcgtcccacccct
gi|6 : agTAAGGGTGG--GACGATCCATTGGTGCACTGATGCATCGTTAT----ACGGGCATCTTGGCGAAATAT------GGATC----GATGCA----TGTC-------TATT-----AAA-T-TATGATACCGGA-CATAAGCATAATG--TCTTCCA-----AAAAATATA----------TGAGCATCACAAGTCAGGTAT---------TTT----TAGTCTACT----TAGAAAATGAACATAGAAC----------A-AAAT---AAATGGTG---TAATAAGCATCAT--CTTTCt
gi|6 : ttagtgtgtgctatagatatACAAAA---TAAAT-------GGTG----TA----AT--AAGCATCA-TCTT---TCTCAAGAAGAGTTTGTGAAGTTTTTGGAGCTTCATGAGA--TA-------ATAATC---------ATTGA----A-T--------------TTGAA----------A---------TCTT---TT-TTTC------TAG-TT----------TTGAT-TGCAA--AGTAT--CACGATATATATATTGTATGAT----GTGTCAAGTATTGTGATtcaagaagagtttgtgaagtttttggagcttcatgagataataatcattgaatttgaaatctttttttctagttttgattgcaaagtatcacgatatatatattgtatgatgtgtcaagtattgtgat
gi|7 : ttagtgtgtgctatagatattaagggtgggacgatccattggtgcactgatgcatcgttatacgggcatcttggcgaaatatggatcgatgcatgtctattaaattatgataccggacataagcataatgtcttccaaaaaatatatgagcatcacaagtcaggtatttttagtctacttagaaaatgaacatagaTAAGGGTGG--GATGATCCATTGGTGCACCAATGCATCATGAT----AC--TCATCTTGGCGATAGAT------GGATA----GATATA----TATC-------TATT-----TAA-T-TATGATATCCTA--AT-AAT-----G--TTTTCTA-----A
gi|7 : AAGTTGGGT----------A-AAAAAAAACATGGTG---GACTACGTAACATAACTTTTGACTGGAAGCAAGTCGGGAAAATGAGA--------GGCTT----GCCATTCGACttatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattcgactttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|7 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacGACTTTATGAAGTTTTTGGAACATCATGATATCTATTTTATTCTGGTAAAGAAACTAGCTGAACCGAGTGATAATTTACTGAGCTGAATA-------AA---------TCTT---TT-TCTC----C-TAGTTTTT------TATTGAtttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|8 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattc--TTATCTTAGCGATATAC------GGATT----GATACA---TGAT--------TATT-----GAA-T-GACGATACCCGA-CAT-AGT-----G--TTTTCCA-----AA------------TA-TCTGAATTTCACACGTCGGGTAT---------TTT-----AGTCCGCCTA-TAAGAAAATGAAAGTAGGGG----------G-AAA---AACATGGCG---GACTGCGTAACAAAATT---GACTAGAAGCAAGTCTGGGAAATGGGAAAGGTCT-AGCTT----GCCATT-TATGGAAGTGAAAACCATTAACAGTG----TA----AG--AGACATCA-T-TTC--TTTTATAAAGAATTTCTGAAGTTTTTGGAGCACTGTGATATTTGTTTTATTCTAGc
gi|9 : aagggtgggacaaaaGTGTACCAATTCATCATGATCGATAC--TCATCTCGGCGATATAC------GGATT----AATACA---T-GTT-------TATT-----AAA-T-TACGATACCCGA-CAT-TGC-----G--TTTTC--------AAAAAGT--------ATTCAAATGTCACAAGTCGGGTATCAGTACGTATTTG---TGGCCCGTCTA-GTAGAAAATGAATGTAGAGCA---------A-AAACAActggaccgagtgatatttt
gi|9 : G-CTT-GGTTT----GGCGTTCTACGAAAGTGTAAAT-------GGTGCACATG----AT--AAACATTGCC-TT---TCTTAAGAAGAA-TTGTGAAGTTTTTTGATCTTCATGAGATggcttggtttggcgttctacgaaagtgtaaatggtgcacatgataaacattgcctttcttaagaagaattgtgaagttttttgatcttcatgagata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCCATGATATATATACAGTATTTTAAGTTTGGCAACAAGCAA
Alignments
lowQualScore : 2222 111111 1111111111 1111111 11111 11111111 5555555555555555555555555555 111111111 1111 333333333333 111 1 222 1111 1111111 1111 1111 2222222222 2222222222222 111 5555555555555555555555555555555555555555555555 111 2222222 111111 11111111 44444444444444444
lowQualScore : 77 0 3 3 1 8888 55 000000 7777 2222222222 1111111 55555 3 3 0 3 3 00000000 8888888888888888888888888888 2 444444444 1111 3 11 7777 99999 1 999999999999 55 000 1 0 6 6 222 5 0000 3 1 6666666 3 0000 0000 777 4444444444 1 1 6666666666666 111 5 3333333333333333333333333333333333333333333333 000 4444444 5 222222 0 66 66 77 11111111 00000000000000000 0
lowQualScore : .. . . . . .... .. ...... .... .......... ....... ..... . . . . . ........ ............................ . ......... .... . .. .... ..... . ............ .. ... . . . . ... . .... . . ....... . .... .... ... .......... . . ............. ... . .............................................. ... ....... . ...... . .. .. .. ........ ................. .
lowQualScore : 99 4 9 7 9 3333 55 555555 7777 5555555555 8888888 55555 3 3 2 3 3 22222222 0000000000000000000000000000 2 555555555 4444 6 66 7777 11111 0 999999999999 77 000 0 8 0 7 333 0 6666 4 0 2222222 1 6666 6666 999 2222222222 0 4 3333333333333 777 2 5555555555555555555555555555555555555555555555 000 1111111 0 888888 4 99 99 99 44444444 00000000000000000 4
consensus : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACA------T---GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA--T-C-GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAGA-GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGT-C-AGAAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT--AA---------TCTT---TTTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
Reference ( family-1174 ) : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACA------T---GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA--T-C-GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAGA-GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGT-C-AGAAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT--AA---------TCTT---TTTTTCTT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
gi|1 : TAAGGGTGG--GGTGATCCATCGCGGCACTGATACATCGTGAC----ACT--CATCTTAACAATATAC------AGATT----GATACAACTTTGTCAAGTC-------TATT-----CAA-T-TACGATACCCGA-CAT-AGC-----A--TTTTCCA-----AAAAAAATAAAAAATAATT-T-GAACACTACAAGTTGGATAT---------TTT----CAGTCTGC-CTAGAAGAGAGT----GA-----AAGTAGAAC----------CTAAATAAAAAATGGCA---GACTACATAACGTAACTTTCAACTGGAAGCAAGTCAGGG-AAATGGGAGA-ATTTTGGCTT----GCCATTCTACAAAAGTGAA-------AATGGTG----TA----AG--AAACATCA-T-TT---TCTTGAGAAGAATTTGTGAAGTTTT-GGAGCATCGTTAGATCTATTTTATTATAGT-C-TAAAACCTTA-CTGA----AGTG---------CGAGTTGAATCAATTT--GA---------TTTT---TTTTCCCTTTTATAG-GTTT------TATTGATATGCAA--AGTAA--CACG--ATATGTATCGTATCGT----GTGTCAAACATCGTGATAC-----------------ATATCGGTTCCGCTACAAAGGGTA
gi|10 : TAAGGGTTGAAGATGATCCAATGGTGCAACGATGCATCACGATCGATACT--CATCTTGATGACATAT------GGATT----GATACA------T---GTCTATATAGTATT-----AAATT-TACGATATCATG-CAT-AGT-----G--TTTTACC-----AAAAATATAA------------GGACATGACAAAGTGGATAT---------CTA----AAGTCCAC-CTAGTTGAAAA-----AA-----ATGTAGA
gi|11 : taatatgtggtaatagaATCTTGGCAATATACCTATATGGGTT----GATACA------T---GTC-------AATTGCCGTAAA-T-TGCAATACCTGG-CAA-ATT-----G--TTTTCCC-----CAAAAAAT-A----TA--T---GAACATaa
gi|12 : TTCCT-----AG-ATTT------TATTGATATACAA--AGTAT--CACA--ATATGTATCAT---------GTGTCAGATATCGTGATAC-----------------ATAACGATTTGGCTAGAAAGGGTAaattaagaacacattagttgttgtttatttagcaa
gi|13 : catgaacatatatttcacatcgAA-T-TATGATAACCGATCAT-AAC-----GCATTTTCCA-----AAA----TTA----TA----C-AAACGTCACAATTCAGGTAT---------TTT----TAGTCCGC-CTACTAGAAAAT----TA-----ATGCATAAC----------A-AAATAtcgtcccaccc
gi|14 : TT------TATTGATATGCAA--AGTAT--CAAG--ATATTTATCGTATTGT----GTGTTAAAAATTGTGATAT-----------------GTATAAGTTCAGCAAGAAAGGGTAggaggtttggcctaat
gi|15 : TATCATATCGT----GTGTCAAATATCGTCATGC-----------------ATATCGGTTCACCTAGATAGGGTAtagcgatcatcccacccct
gi|2 : AAGGATGG--GATGATCCATCAGT----C----CATTGTGAT----ACT--CTTCTTGATGATATAT------AGATT----GATACA------A---GTC-------TATC-----AAA-T-TATGACACCTGA-CAT-AGC-----A--TTTTC---------ATTAATTA----TA----C-GATCATCACAAGTCGGGTAT---------TTT----TAGATTGC-CTAGTAGAAAAT----AA-----AAGCAGAGCAGAGATTATAG-AAACAAAAAATGGCA---GACAACTTAATGTAACTTTCAACTAGAAGCAAGTC-AAG-AAATAAGAG--GTTT-GGCTT----GTCATTCTATGAAAGTGAA-------AAAGGTG----CA----AG--AAACATCG------------AAGTAGAATTTGTGAAGTTTTTCGAGCATCGTTAGATCTATTTT-------------AAAC--TAGCTGA----TGCA---------CAGGTTGAATAAATTT--AAAAAAAAAATTC------------T-----AG-TTTT------TATTAATATGCAA--AGTATCCCACG--ATATGTATCATGTCAT----GTGTCAAATATCATGATACGTAATGTATCATGTCATGTATCAGTTCAGCTAGAAAGGGTAaagttccacccc
gi|3 : TAAGGGTGG--GACGGTCCATCGGTGCA--------TCGTGAT----ACT--CATGTTTACAATATAC------GGATTGATCGATACA------T---GTC-------TATTTAA--AAA-T-CATGATGCCCCA-CAT-AGC-----G--TTTTCCA-----AA------AG----TA--TAC-GAATGTCACAAGTCGAGTAT---------TTTTAGCTAGTCCAC-CTATTAGGAAAT----GA-----AAG----GCT---------GCAAACCAAAAATGATGTTTGACTttgtcccatccct
gi|3 : tagtattgttgcaga-GTTT-GACTTCATTGTCATTCTACGAAATTGTA-------AACAATG----TACATAATTTAAGCATCA-T-CTCTCTTTTAAGAAGAATTTGTTAAGTTTTTGGAGCTTCATGAGATtcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|3 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatATAACTTT--GACA-------TCTT---TTTTTCT------AG-TTTTATTCAATATTGATATGTAATTAGTAT--CACG--ATATGTATTGTATCATACATGTGTCAAATATCGCAATAC-----------------GTATTGATTTGGCTAGAAAGGGTAaatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|4 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagTAAGGGTGA--GGCGATCCATGGGTGCACCAATACATCATGATACTAACT--CCTTTTGGCGATATGC------GGATC----GATACA------T---GCC-------CATT-----TAA-TATACGATA-------AT-AGC-----GT-TTTTCCACATACAAAAAAA-AA------------GAA-GTTTCAAGTCGGATAT---------ATT----TAGTCTGC-GTAGAAGAAAAT----TA-----ACATAGAtggtcccacccc
gi|4 : -AAAAGGG----GTTT-GGCTT----GCGATTCTACAAAAGTGTA-------AATAGGG----TA----AT--AAACATTA-TCTT---TCTCAAGAACAATTTGTAAAGTCTTTGGAGCTTTACGAGATACAT---------GT---AAAAA---TAACT-----------------------------AAATTT--TA---------TATC---TTGTTTCT-----AG-TTTT------TATTGGTTCGCAG--AGTAT--CACG--ATATGCATCGTA---------TGTCAAATA---TGATAC-----------------GTATCGATTTGGAGAGAAAGGGTAaaaaaggggtttggcttgcgattctacaaaagtgtaaatagggtaataaacattatctttctcaagaacaatttgtaaagtctttggagctttacgagatacatgtaaaaataactaaattttatatcttgtttctagtttttattggttcgcagagtatcacgatatgcatcgtatgtcaaatatgatacgtatcgatttggagagaaagggtatcgtcccacccct
gi|5 : taagggtgaggcgatccatgggtgcaccaatacatcatgatactaactccttttggcgatatgcggatcgatacatgcccatttaatatacgataatagcgtttttccacatacaaaaaaaaagaagtttcaagtcggatatatttagtctgcgtagaagaaaattaacatagaaGGTGGGACGATGTATCATGAT----ACT--CATCTTAATGATATAT------GGATT----GATACA------A---GTC-------TGTT-----AAA-T-TGTGATACCTGA-CAT---C-----A--TTTTACA-----AA------AA----TA--TAC-GAACATCACAAGCCGGGTAT---------TTT----TTCTCCGCTTTTGTAGAAAAT----GA-----GAGTAGAAC----------T-AAAATAAAAATGGCA---GACTACATAACGTAATATTTGACTGGAAGC--------G-AAATTGGAGAGGTTT-TGCTT----G-CATTCTGCAATAGTGAA-------GATGGTG----TA----AG--AAACAT---T-AT---TCTTAA-----------GAAGTTCTAGGAGCATCGTTAGATCTGTTTTATTGTAGT-CAAGAAAC--TAGCTGA----AGTG---------CAAGTTGAATAAATTTAAAA---------TTTTTTGTTTTTCTCA----AG-CTTT------TATTGATATGCAA--AGTAT--CAtcgtcccacccct
gi|6 : agTAAGGGTGG--GACGATCCATTGGTGCACTGATGCATCGTTAT----ACGGGCATCTTGGCGAAATAT------GGATC----GATGCA------T---GTC-------TATT-----AAA-T-TATGATACCGGA-CATAAGCATAATG--TCTTCC-------AAAAAAT-A----TA--T---GAGCATCACAAGTCAGGTAT---------TTT----TAGTCTAC-T---TAGAAAAT----GA-----ACATAGAAC----------A-AAAT---AAATGGTG---TAATAAGCATCAT--CTTTCt
gi|6 : ttagtgtgtgctatagatatACAAAA---TA-------AATGGTG----TA----AT--AAGCATCA-TCTT---TCTCAAGAAGAGTTTGTGAAGTTTTTGGAGCTTCATGAGA--TA-------ATAAT-C-A----------TTGA----A-T--------------TTGA----------AA---------TCTT---TTTTTC-T-----AG-TT----------TTGAT-TGCAA--AGTAT--CACGATATATATATTGTATGAT----GTGTCAAGTATTGTGATtcaagaagagtttgtgaagtttttggagcttcatgagataataatcattgaatttgaaatctttttttctagttttgattgcaaagtatcacgatatatatattgtatgatgtgtcaagtattgtgat
gi|7 : ttagtgtgtgctatagatattaagggtgggacgatccattggtgcactgatgcatcgttatacgggcatcttggcgaaatatggatcgatgcatgtctattaaattatgataccggacataagcataatgtcttccaaaaaatatatgagcatcacaagtcaggtatttttagtctacttagaaaatgaacatagaTAAGGGTGG--GATGATCCATTGGTGCACCAATGCATCATGAT----ACT--CATCTTGGCGATAGAT------GGATA----GATATA------T---ATC-------TATT-----TAA-T-TATGATATCCTA--AT-AAT-----G--TTTTCT--------AATTATGA----TA--T-C----CTT----AGGCTAATGT---------TTT-------------CT----GAAAATATACGAATCACAAGTTGGGT----------A-AAAAAAAACATGGTG---GACTACGTAACATAACTTTTGACTGGAAGCAAGTC-GGGAAAATGAGA--------GGCTT----GCCATTCGAC
gi|7 : GACTTTATGAAGTTTTTGGAACATCATGATATCTATTTTATTCTGGTAA-AGAAAC--TAGCTGAACCGAGTGATAATTTACTGAGCTGAATA-------AA---------TCTT---TTTCTCCT-----AGTTTTT------TATTGAtttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|8 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattcT--TATCTTAGCGATATAC------GGATT----GATACA------T---GAT-------TATT-----GAA-T-GACGATACCCGA-CAT-AGT-----G--TTTTCCA-------------AA----TA--T-CTGAATTTCACACGTCGGGTA----------TTT----TAGTCCGC-CTATAAGAAAAT----GA-----AAGTAGGGG----------G-A---AAAACATGGCG---GACTGCGTAACAAAA---TTGACTAGAAGCAAGTCTGGG-AAATGGGAAAGGTCT-AGCTT----GCCATT-TATGGAAGTGAAAACCATTAACAGTG----TA----AG--AGACATCA-T-TTC--TTTTATAAAGAATTTCTGAAGTTTTTGGAGCACTGTGATATTTGTTTTATTCTAGC-T-GGAc
gi|9 : aagggtgggacaaaaGTGTACCAATTCATCATGATCGATACT--CATCTCGGCGATATAC------GGATT----AATACA------T---GTT-------TATT-----AAA-T-TACGATACCCGA-CAT-TGC-----G--TTTTC--------AAAAAGT-A----T---T-C-AAATGTCACAAGTCGGGTATCAGTACGTATTTG---TGGCCCGT-CTAGTAGAAAAT----GA-----ATGTAGAGCA---------A-AAACAAccgagtgatatttt
gi|9 : -GCTT-GGTTT----GGCGTTCTACGAAAGTGTA-------AATGGTGCACATG----AT--AAACATTGCC-TT---TCTTAAGAAGAA-TTGTGAAGTTTTTTGATCTTCATGAGATggcttggtttggcgttctacgaaagtgtaaatggtgcacatgataaacattgcctttcttaagaagaattgtgaagttttttgatcttcatgagata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCCATGATATATATACAGTATTTTAAGTTTGGCAACAAGCAA
Alignments
lowQualScore : 2222 111111 1111111111 1111111 11111 11111111 5555555555555555555555555555 111111111 1111 333333333333 111 1 222 1111 1111111 1111 1111 2222222222 2222222222222 111 55555555555555555555 222222 11111 111111 11111111 44444444444444444
lowQualScore : 77 0 3 3 1 8888 55 000000 7777 2222222222 1111111 55555 3 3 0 3 3 00000000 8888888888888888888888888888 2 444444444 1111 3 11 7777 99999 1 999999999999 55 000 1 0 6 6 222 5 0000 3 1 6666666 3 0000 0000 777 4444444444 1 1 6666666666666 111 5 11111111111111111111 1 22 444444 77 1 77 3 99999 5 222222 0 66 66 77 11111111 00000000000000000 0
lowQualScore : .. . . . . .... .. ...... .... .......... ....... ..... . . . . . ........ ............................ . ......... .... . .. .... ..... . ............ .. ... . . . . ... . .... . . ....... . .... .... ... .......... . . ............. ... . .................... . .. ...... .. . .. . ..... . ...... . .. .. .. ........ ................. .
lowQualScore : 99 4 9 7 9 3333 55 555555 7777 5555555555 8888888 55555 3 3 2 3 3 22222222 0000000000000000000000000000 2 555555555 4444 6 66 7777 11111 0 999999999999 77 000 0 8 0 7 333 0 6666 4 0 2222222 1 6666 6666 999 2222222222 0 4 3333333333333 777 2 55555555555555555555 4 77 333333 99 7 99 4 44444 0 888888 4 99 99 99 44444444 00000000000000000 4
consensus : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACA------T---GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA--T-C-GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAGA-GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGT-C-AGAAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TCTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
Reference ( family-1174 ) : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACA------T---GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA--T-C-GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAGA-GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGT-C-AGAAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TCTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
gi|1 : TAAGGGTGG--GGTGATCCATCGCGGCACTGATACATCGTGAC----ACT--CATCTTAACAATATAC------AGATT----GATACAACTTTGTCAAGTC-------TATT-----CAA-T-TACGATACCCGA-CAT-AGC-----A--TTTTCCA-----AAAAAAATAAAAAATAATT-T-GAACACTACAAGTTGGATAT---------TTT----CAGTCTGC-CTAGAAGAGAGT----GA-----AAGTAGAAC----------CTAAATAAAAAATGGCA---GACTACATAACGTAACTTTCAACTGGAAGCAAGTCAGGG-AAATGGGAGA-ATTTTGGCTT----GCCATTCTACAAAAGTGAA-------AATGGTG----TA----AG--AAACATCA-T-TT---TCTTGAGAAGAATTTGTGAAGTTTT-GGAGCATCGTTAGATCTATTTTATTATAGT-C-TAAAACCTTA-CTGA----AGTG---------CGAGTTGAATCAATTT------GA--TTTTT--TTTCCCTTTTATAG-GTTT------TATTGATATGCAA--AGTAA--CACG--ATATGTATCGTATCGT----GTGTCAAACATCGTGATAC-----------------ATATCGGTTCCGCTACAAAGGGTA
gi|10 : TAAGGGTTGAAGATGATCCAATGGTGCAACGATGCATCACGATCGATACT--CATCTTGATGACATAT------GGATT----GATACA------T---GTCTATATAGTATT-----AAATT-TACGATATCATG-CAT-AGT-----G--TTTTACC-----AAAAATATAA------------GGACATGACAAAGTGGATAT---------CTA----AAGTCCAC-CTAGTTGAAAA-----AA-----ATGTAGA
gi|11 : taatatgtggtaatagaATCTTGGCAATATACCTATATGGGTT----GATACA------T---GTC-------AATTGCCGTAAA-T-TGCAATACCTGG-CAA-ATT-----G--TTTTCCC-----CAAAAAAT-A----TA--T---GAACATaa
gi|12 : TTCCT-----AG-ATTT------TATTGATATACAA--AGTAT--CACA--ATATGTATCAT---------GTGTCAGATATCGTGATAC-----------------ATAACGATTTGGCTAGAAAGGGTAaattaagaacacattagttgttgtttatttagcaa
gi|13 : catgaacatatatttcacatcgAA-T-TATGATAACCGATCAT-AAC-----GCATTTTCCA-----AAA----TTA----TA----C-AAACGTCACAATTCAGGTAT---------TTT----TAGTCCGC-CTACTAGAAAAT----TA-----ATGCATAAC----------A-AAATAtcgtcccaccc
gi|14 : TT------TATTGATATGCAA--AGTAT--CAAG--ATATTTATCGTATTGT----GTGTTAAAAATTGTGATAT-----------------GTATAAGTTCAGCAAGAAAGGGTAggaggtttggcctaat
gi|15 : TATCATATCGT----GTGTCAAATATCGTCATGC-----------------ATATCGGTTCACCTAGATAGGGTAtagcgatcatcccacccct
gi|2 : AAGGATGG--GATGATCCATCAGT----C----CATTGTGAT----ACT--CTTCTTGATGATATAT------AGATT----GATACA------A---GTC-------TATC-----AAA-T-TATGACACCTGA-CAT-AGC-----A--TTTTC---------ATTAATTA----TA----C-GATCATCACAAGTCGGGTAT---------TTT----TAGATTGC-CTAGTAGAAAAT----AA-----AAGCAGAGCAGAGATTATAG-AAACAAAAAATGGCA---GACAACTTAATGTAACTTTCAACTAGAAGCAAGTC-AAG-AAATAAGAG--GTTT-GGCTT----GTCATTCTATGAAAGTGAA-------AAAGGTG----CA----AG--AAACATCG------------AAGTAGAATTTGTGAAGTTTTTCGAGCATCGTTAGATCTATTTT-------------AAAC--TAGCTGA----TGCA---------CAGGTTGAATAAATTTAAAAAAAA--AATT--------CT-----AG-TTTT------TATTAATATGCAA--AGTATCCCACG--ATATGTATCATGTCAT----GTGTCAAATATCATGATACGTAATGTATCATGTCATGTATCAGTTCAGCTAGAAAGGGTAaagttccacccc
gi|3 : TAAGGGTGG--GACGGTCCATCGGTGCA--------TCGTGAT----ACT--CATGTTTACAATATAC------GGATTGATCGATACA------T---GTC-------TATTTAA--AAA-T-CATGATGCCCCA-CAT-AGC-----G--TTTTCCA-----AA------AG----TA--TAC-GAATGTCACAAGTCGAGTAT---------TTTTAGCTAGTCCAC-CTATTAGGAAAT----GA-----AAG----GCT---------GCAAACCAAAAATGATGTTTGACTttgtcccatccct
gi|3 : tagtattgttgcaga-GTTT-GACTTCATTGTCATTCTACGAAATTGTA-------AACAATG----TACATAATTTAAGCATCA-T-CTCTCTTTTAAGAAGAATTTGTTAAGTTTTTGGAGCTTCATGAGATtcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|3 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatATAACTTT------GACATCTTT--TTTTC-T-----AG-TTTTATTCAATATTGATATGTAATTAGTAT--CACG--ATATGTATTGTATCATACATGTGTCAAATATCGCAATAC-----------------GTATTGATTTGGCTAGAAAGGGTAaatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|4 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagTAAGGGTGA--GGCGATCCATGGGTGCACCAATACATCATGATACTAACT--CCTTTTGGCGATATGC------GGATC----GATACA------T---GCC-------CATT-----TAA-TATACGATA-------AT-AGC-----GT-TTTTCCACATACAAAAAAA-AA------------GAA-GTTTCAAGTCGGATAT---------ATT----TAGTCTGC-GTAGAAGAAAAT----TA-----ACATAGAtggtcccacccc
gi|4 : -AAAAGGG----GTTT-GGCTT----GCGATTCTACAAAAGTGTA-------AATAGGG----TA----AT--AAACATTA-TCTT---TCTCAAGAACAATTTGTAAAGTCTTTGGAGCTTTACGAGATACAT---------GT---AAAAA---TAACT-----------------------------AAATTT------TA--TATCT--TGTTTCT-----AG-TTTT------TATTGGTTCGCAG--AGTAT--CACG--ATATGCATCGTA---------TGTCAAATA---TGATAC-----------------GTATCGATTTGGAGAGAAAGGGTAaaaaaggggtttggcttgcgattctacaaaagtgtaaatagggtaataaacattatctttctcaagaacaatttgtaaagtctttggagctttacgagatacatgtaaaaataactaaattttatatcttgtttctagtttttattggttcgcagagtatcacgatatgcatcgtatgtcaaatatgatacgtatcgatttggagagaaagggtatcgtcccacccct
gi|5 : taagggtgaggcgatccatgggtgcaccaatacatcatgatactaactccttttggcgatatgcggatcgatacatgcccatttaatatacgataatagcgtttttccacatacaaaaaaaaagaagtttcaagtcggatatatttagtctgcgtagaagaaaattaacatagaaGGTGGGACGATGTATCATGAT----ACT--CATCTTAATGATATAT------GGATT----GATACA------A---GTC-------TGTT-----AAA-T-TGTGATACCTGA-CAT---C-----A--TTTTACA-----AA------AA----TA--TAC-GAACATCACAAGCCGGGTAT---------TTT----TTCTCCGCTTTTGTAGAAAAT----GA-----GAGTAGAAC----------T-AAAATAAAAATGGCA---GACTACATAACGTAATATTTGACTGGAAGC--------G-AAATTGGAGAGGTTT-TGCTT----G-CATTCTGCAATAGTGAA-------GATGGTG----TA----AG--AAACAT---T-AT---TCTTAA-----------GAAGTTCTAGGAGCATCGTTAGATCTGTTTTATTGTAGT-CAAGAAAC--TAGCTGA----AGTG---------CAAGTTGAATAAATTTAA----AA--TTTTTTGTTTTTCTCA---AG-CTTT------TATTGATATGCAA--AGTAT--CAtcgtcccacccct
gi|6 : agTAAGGGTGG--GACGATCCATTGGTGCACTGATGCATCGTTAT----ACGGGCATCTTGGCGAAATAT------GGATC----GATGCA------T---GTC-------TATT-----AAA-T-TATGATACCGGA-CATAAGCATAATG--TCTTCC-------AAAAAAT-A----TA--T---GAGCATCACAAGTCAGGTAT---------TTT----TAGTCTAC-T---TAGAAAAT----GA-----ACATAGAAC----------A-AAAT---AAATGGTG---TAATAAGCATCAT--CTTTCt
gi|6 : ttagtgtgtgctatagatatACAAAA---TA-------AATGGTG----TA----AT--AAGCATCA-TCTT---TCTCAAGAAGAGTTTGTGAAGTTTTTGGAGCTTCATGAGA--TA-------ATAAT-C-A----------TTGA----A-T--------------TTGA--------------AA--TCTTT--TTTT-CT-----AG-TT----------TTGAT-TGCAA--AGTAT--CACGATATATATATTGTATGAT----GTGTCAAGTATTGTGATtcaagaagagtttgtgaagtttttggagcttcatgagataataatcattgaatttgaaatctttttttctagttttgattgcaaagtatcacgatatatatattgtatgatgtgtcaagtattgtgat
gi|7 : ttagtgtgtgctatagatattaagggtgggacgatccattggtgcactgatgcatcgttatacgggcatcttggcgaaatatggatcgatgcatgtctattaaattatgataccggacataagcataatgtcttccaaaaaatatatgagcatcacaagtcaggtatttttagtctacttagaaaatgaacatagaTAAGGGTGG--GATGATCCATTGGTGCACCAATGCATCATGAT----ACT--CATCTTGGCGATAGAT------GGATA----GATATA------T---ATC-------TATT-----TAA-T-TATGATATCCTA--AT-AAT-----G--TTTTCT--------AATTATGA----TA--T-C----CTT----AGGCTAATGT---------TTT-------------CT----GAAAATATACGAATCACAAGTTGGGT----------A-AAAAAAAACATGGTG---GACTACGTAACATAACTTTTGACTGGAAGCAAGTC-GGGAAAATGAGA--------GGCTT----GCCATTCGAC
gi|7 : GACTTTATGAAGTTTTTGGAACATCATGATATCTATTTTATTCTGGTAA-AGAAAC--TAGCTGAACCGAGTGATAATTTACTGAGCTGAATA-----------AA--TCTTT--TTCTCCT-----AGTTTTT------TATTGAtttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|8 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattcT--TATCTTAGCGATATAC------GGATT----GATACA------T---GAT-------TATT-----GAA-T-GACGATACCCGA-CAT-AGT-----G--TTTTCCA-------------AA----TA--T-CTGAATTTCACACGTCGGGTA----------TTT----TAGTCCGC-CTATAAGAAAAT----GA-----AAGTAGGGG----------G-A---AAAACATGGCG---GACTGCGTAACAAAA---TTGACTAGAAGCAAGTCTGGG-AAATGGGAAAGGTCT-AGCTT----GCCATT-TATGGAAGTGAAAACCATTAACAGTG----TA----AG--AGACATCA-T-TTC--TTTTATAAAGAATTTCTGAAGTTTTTGGAGCACTGTGATATTTGTTTTATTCTAGC-T-GGAc
gi|9 : aagggtgggacaaaaGTGTACCAATTCATCATGATCGATACT--CATCTCGGCGATATAC------GGATT----AATACA------T---GTT-------TATT-----AAA-T-TACGATACCCGA-CAT-TGC-----G--TTTTC--------AAAAAGT-A----T---T-C-AAATGTCACAAGTCGGGTATCAGTACGTATTTG---TGGCCCGT-CTAGTAGAAAAT----GA-----ATGTAGAGCA---------A-AAACAAccgagtgatatttt
gi|9 : -GCTT-GGTTT----GGCGTTCTACGAAAGTGTA-------AATGGTGCACATG----AT--AAACATTGCC-TT---TCTTAAGAAGAA-TTGTGAAGTTTTTTGATCTTCATGAGATggcttggtttggcgttctacgaaagtgtaaatggtgcacatgataaacattgcctttcttaagaagaattgtgaagttttttgatcttcatgagata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCCATGATATATATACAGTATTTTAAGTTTGGCAACAAGCAA
Alignments
lowQualScore : 2222 111111 1111111111 1111111 11111 11111111 5555555555555555555555555555 111111111 1111 333333333333 111 1 222 1111 1111111 1111 1111 2222222222 2222222222222 111 55555555555555555555 222222 11111 111111 11111111 44444444444444444
lowQualScore : 77 0 3 3 1 8888 55 000000 7777 2222222222 1111111 55555 3 3 0 3 3 00000000 8888888888888888888888888888 2 444444444 1111 3 11 7777 99999 1 999999999999 55 000 1 0 6 6 222 5 0000 3 1 6666666 3 0000 0000 777 4444444444 1 1 6666666666666 111 5 11111111111111111111 1 22 444444 77 1 77 3 99999 5 222222 0 66 66 77 11111111 00000000000000000 0
lowQualScore : .. . . . . .... .. ...... .... .......... ....... ..... . . . . . ........ ............................ . ......... .... . .. .... ..... . ............ .. ... . . . . ... . .... . . ....... . .... .... ... .......... . . ............. ... . .................... . .. ...... .. . .. . ..... . ...... . .. .. .. ........ ................. .
lowQualScore : 99 4 9 7 9 3333 55 555555 7777 5555555555 8888888 55555 3 3 2 3 3 22222222 0000000000000000000000000000 2 555555555 4444 6 66 7777 11111 0 999999999999 77 000 0 8 0 7 333 0 6666 4 0 2222222 1 6666 6666 999 2222222222 0 4 3333333333333 777 2 55555555555555555555 4 77 333333 99 7 99 4 44444 0 888888 4 99 99 99 44444444 00000000000000000 4
consensus : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACA------T---GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA--T-C-GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAGA-GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGT-C-AGAAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TCTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
Reference ( family-1174 ) : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACA------T---GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA--T-C-GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAGA-GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGT-C-AGAAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TCTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
gi|1 : TAAGGGTGG--GGTGATCCATCGCGGCACTGATACATCGTGAC----ACT--CATCTTAACAATATAC------AGATT----GATACAACTTTGTCAAGTC-------TATT-----CAA-T-TACGATACCCGA-CAT-AGC-----A--TTTTCCA-----AAAAAAATAAAAAATAATT-T-GAACACTACAAGTTGGATAT---------TTT----CAGTCTGC-CTAGAAGAGAGT----GA-----AAGTAGAAC----------CTAAATAAAAAATGGCA---GACTACATAACGTAACTTTCAACTGGAAGCAAGTCAGGG-AAATGGGAGA-ATTTTGGCTT----GCCATTCTACAAAAGTGAA-------AATGGTG----TA----AG--AAACATCA-T-TT---TCTTGAGAAGAATTTGTGAAGTTTT-GGAGCATCGTTAGATCTATTTTATTATAGT-C-TAAAACCTTA-CTGA----AGTG---------CGAGTTGAATCAATTT------GA--TTTTT--TTTCCCTTTTATAG-GTTT------TATTGATATGCAA--AGTAA--CACG--ATATGTATCGTATCGT----GTGTCAAACATCGTGATAC-----------------ATATCGGTTCCGCTACAAAGGGTA
gi|10 : TAAGGGTTGAAGATGATCCAATGGTGCAACGATGCATCACGATCGATACT--CATCTTGATGACATAT------GGATT----GATACA------T---GTCTATATAGTATT-----AAATT-TACGATATCATG-CAT-AGT-----G--TTTTACC-----AAAAATATAA------------GGACATGACAAAGTGGATAT---------CTA----AAGTCCAC-CTAGTTGAAAA-----AA-----ATGTAGA
gi|11 : taatatgtggtaatagaATCTTGGCAATATACCTATATGGGTT----GATACA------T---GTC-------AATTGCCGTAAA-T-TGCAATACCTGG-CAA-ATT-----G--TTTTCCC-----CAAAAAAT-A----TA--T---GAACATaa
gi|12 : TTCCT-----AG-ATTT------TATTGATATACAA--AGTAT--CACA--ATATGTATCAT---------GTGTCAGATATCGTGATAC-----------------ATAACGATTTGGCTAGAAAGGGTAaattaagaacacattagttgttgtttatttagcaa
gi|13 : catgaacatatatttcacatcgAA-T-TATGATAACCGATCAT-AAC-----GCATTTTCCA-----AAA----TTA----TA----C-AAACGTCACAATTCAGGTAT---------TTT----TAGTCCGC-CTACTAGAAAAT----TA-----ATGCATAAC----------A-AAATAtcgtcccaccc
gi|14 : TT------TATTGATATGCAA--AGTAT--CAAG--ATATTTATCGTATTGT----GTGTTAAAAATTGTGATAT-----------------GTATAAGTTCAGCAAGAAAGGGTAggaggtttggcctaat
gi|15 : TATCATATCGT----GTGTCAAATATCGTCATGC-----------------ATATCGGTTCACCTAGATAGGGTAtagcgatcatcccacccct
gi|2 : AAGGATGG--GATGATCCATCAGT----C----CATTGTGAT----ACT--CTTCTTGATGATATAT------AGATT----GATACA------A---GTC-------TATC-----AAA-T-TATGACACCTGA-CAT-AGC-----A--TTTTC---------ATTAATTA----TA----C-GATCATCACAAGTCGGGTAT---------TTT----TAGATTGC-CTAGTAGAAAAT----AA-----AAGCAGAGCAGAGATTATAG-AAACAAAAAATGGCA---GACAACTTAATGTAACTTTCAACTAGAAGCAAGTC-AAG-AAATAAGAG--GTTT-GGCTT----GTCATTCTATGAAAGTGAA-------AAAGGTG----CA----AG--AAACATCG------------AAGTAGAATTTGTGAAGTTTTTCGAGCATCGTTAGATCTATTTT-------------AAAC--TAGCTGA----TGCA---------CAGGTTGAATAAATTTAAAAAAAA--AATT--------CT-----AG-TTTT------TATTAATATGCAA--AGTATCCCACG--ATATGTATCATGTCAT----GTGTCAAATATCATGATACGTAATGTATCATGTCATGTATCAGTTCAGCTAGAAAGGGTAaagttccacccc
gi|3 : TAAGGGTGG--GACGGTCCATCGGTGCA--------TCGTGAT----ACT--CATGTTTACAATATAC------GGATTGATCGATACA------T---GTC-------TATTTAA--AAA-T-CATGATGCCCCA-CAT-AGC-----G--TTTTCCA-----AA------AG----TA--TAC-GAATGTCACAAGTCGAGTAT---------TTTTAGCTAGTCCAC-CTATTAGGAAAT----GA-----AAG----GCT---------GCAAACCAAAAATGATGTTTGACTttgtcccatccct
gi|3 : tagtattgttgcaga-GTTT-GACTTCATTGTCATTCTACGAAATTGTA-------AACAATG----TACATAATTTAAGCATCA-T-CTCTCTTTTAAGAAGAATTTGTTAAGTTTTTGGAGCTTCATGAGATtcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|3 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatATAACTTT------GACATCTTT--TTTTC-T-----AG-TTTTATTCAATATTGATATGTAATTAGTAT--CACG--ATATGTATTGTATCATACATGTGTCAAATATCGCAATAC-----------------GTATTGATTTGGCTAGAAAGGGTAaatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|4 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagTAAGGGTGA--GGCGATCCATGGGTGCACCAATACATCATGATACTAACT--CCTTTTGGCGATATGC------GGATC----GATACA------T---GCC-------CATT-----TAA-TATACGATA-------AT-AGC-----GT-TTTTCCACATACAAAAAAA-AA------------GAA-GTTTCAAGTCGGATAT---------ATT----TAGTCTGC-GTAGAAGAAAAT----TA-----ACATAGAtggtcccacccc
gi|4 : -AAAAGGG----GTTT-GGCTT----GCGATTCTACAAAAGTGTA-------AATAGGG----TA----AT--AAACATTA-TCTT---TCTCAAGAACAATTTGTAAAGTCTTTGGAGCTTTACGAGATACAT---------GT---AAAAA---TAACT-----------------------------AAATTT------TA--TATCT--TGTTTCT-----AG-TTTT------TATTGGTTCGCAG--AGTAT--CACG--ATATGCATCGTA---------TGTCAAATA---TGATAC-----------------GTATCGATTTGGAGAGAAAGGGTAaaaaaggggtttggcttgcgattctacaaaagtgtaaatagggtaataaacattatctttctcaagaacaatttgtaaagtctttggagctttacgagatacatgtaaaaataactaaattttatatcttgtttctagtttttattggttcgcagagtatcacgatatgcatcgtatgtcaaatatgatacgtatcgatttggagagaaagggtatcgtcccacccct
gi|5 : taagggtgaggcgatccatgggtgcaccaatacatcatgatactaactccttttggcgatatgcggatcgatacatgcccatttaatatacgataatagcgtttttccacatacaaaaaaaaagaagtttcaagtcggatatatttagtctgcgtagaagaaaattaacatagaaGGTGGGACGATGTATCATGAT----ACT--CATCTTAATGATATAT------GGATT----GATACA------A---GTC-------TGTT-----AAA-T-TGTGATACCTGA-CAT---C-----A--TTTTACA-----AA------AA----TA--TAC-GAACATCACAAGCCGGGTAT---------TTT----TTCTCCGCTTTTGTAGAAAAT----GA-----GAGTAGAAC----------T-AAAATAAAAATGGCA---GACTACATAACGTAATATTTGACTGGAAGC--------G-AAATTGGAGAGGTTT-TGCTT----G-CATTCTGCAATAGTGAA-------GATGGTG----TA----AG--AAACAT---T-AT---TCTTAA-----------GAAGTTCTAGGAGCATCGTTAGATCTGTTTTATTGTAGT-CAAGAAAC--TAGCTGA----AGTG---------CAAGTTGAATAAATTTAA----AA--TTTTTTGTTTTTCTCA---AG-CTTT------TATTGATATGCAA--AGTAT--CAtcgtcccacccct
gi|6 : agTAAGGGTGG--GACGATCCATTGGTGCACTGATGCATCGTTAT----ACGGGCATCTTGGCGAAATAT------GGATC----GATGCA------T---GTC-------TATT-----AAA-T-TATGATACCGGA-CATAAGCATAATG--TCTTCC-------AAAAAAT-A----TA--T---GAGCATCACAAGTCAGGTAT---------TTT----TAGTCTAC-T---TAGAAAAT----GA-----ACATAGAAC----------A-AAAT---AAATGGTG---TAATAAGCATCAT--CTTTCt
gi|6 : ttagtgtgtgctatagatatACAAAA---TA-------AATGGTG----TA----AT--AAGCATCA-TCTT---TCTCAAGAAGAGTTTGTGAAGTTTTTGGAGCTTCATGAGA--TA-------ATAAT-C-A----------TTGA----A-T--------------TTGA--------------AA--TCTTT--TTTT-CT-----AG-TT----------TTGAT-TGCAA--AGTAT--CACGATATATATATTGTATGAT----GTGTCAAGTATTGTGATtcaagaagagtttgtgaagtttttggagcttcatgagataataatcattgaatttgaaatctttttttctagttttgattgcaaagtatcacgatatatatattgtatgatgtgtcaagtattgtgat
gi|7 : ttagtgtgtgctatagatattaagggtgggacgatccattggtgcactgatgcatcgttatacgggcatcttggcgaaatatggatcgatgcatgtctattaaattatgataccggacataagcataatgtcttccaaaaaatatatgagcatcacaagtcaggtatttttagtctacttagaaaatgaacatagaTAAGGGTGG--GATGATCCATTGGTGCACCAATGCATCATGAT----ACT--CATCTTGGCGATAGAT------GGATA----GATATA------T---ATC-------TATT-----TAA-T-TATGATATCCTA--AT-AAT-----G--TTTTCT--------AATTATGA----TA--T-C----CTT----AGGCTAATGT---------TTT-------------CT----GAAAATATACGAATCACAAGTTGGGT----------A-AAAAAAAACATGGTG---GACTACGTAACATAACTTTTGACTGGAAGCAAGTC-GGGAAAATGAGA--------GGCTT----GCCATTCGAC
gi|7 : GACTTTATGAAGTTTTTGGAACATCATGATATCTATTTTATTCTGGTAA-AGAAAC--TAGCTGAACCGAGTGATAATTTACTGAGCTGAATA-----------AA--TCTTT--TTCTCCT-----AGTTTTT------TATTGAtttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|8 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattcT--TATCTTAGCGATATAC------GGATT----GATACA------T---GAT-------TATT-----GAA-T-GACGATACCCGA-CAT-AGT-----G--TTTTCCA-------------AA----TA--T-CTGAATTTCACACGTCGGGTA----------TTT----TAGTCCGC-CTATAAGAAAAT----GA-----AAGTAGGGG----------G-A---AAAACATGGCG---GACTGCGTAACAAAA---TTGACTAGAAGCAAGTCTGGG-AAATGGGAAAGGTCT-AGCTT----GCCATT-TATGGAAGTGAAAACCATTAACAGTG----TA----AG--AGACATCA-T-TTC--TTTTATAAAGAATTTCTGAAGTTTTTGGAGCACTGTGATATTTGTTTTATTCTAGC-T-GGAc
gi|9 : aagggtgggacaaaaGTGTACCAATTCATCATGATCGATACT--CATCTCGGCGATATAC------GGATT----AATACA------T---GTT-------TATT-----AAA-T-TACGATACCCGA-CAT-TGC-----G--TTTTC--------AAAAAGT-A----T---T-C-AAATGTCACAAGTCGGGTATCAGTACGTATTTG---TGGCCCGT-CTAGTAGAAAAT----GA-----ATGTAGAGCA---------A-AAACAAccgagtgatatttt
gi|9 : -GCTT-GGTTT----GGCGTTCTACGAAAGTGTA-------AATGGTGCACATG----AT--AAACATTGCC-TT---TCTTAAGAAGAA-TTGTGAAGTTTTTTGATCTTCATGAGATggcttggtttggcgttctacgaaagtgtaaatggtgcacatgataaacattgcctttcttaagaagaattgtgaagttttttgatcttcatgagata
blockSeqs : AA A G G CGAT GG CTATAT GATC T TATATAG GCCGT T A T A ATAATG ACATACAAAAAAAAA A CAGTACGTA TAGC T GT ATAC ATCAC T AGAGATTATAG TA TTT C T A GAG . CATT T A AACCATT A CACA CATA TTT CATCTCTC A T ATTGTAGTCAAG C G ACCGAGTGATAATTTACTGA A AA AAAAAA CA A TG C CA T ATTCAA TT CC AT TCATACAT GTAATGTATCATGTCAT
blockSeqs : . C A A ACTA . . . T . TAA . . . . GCA CCAAAAAATATAT A . G . CT . . T TGC CA . T . . AAG . . T T . C . . G TATCTT T T ATTCTGGTAAAG C A TGCACAG A AC AA . C . C . . . . . . TTGT .
blockSeqs : . A G G CGAT . . . A . . . . . . GT AATTATGATATC G . . . GT . . A AA CC . C . . G . . C T . T . . T CATCTT T T ATTCTAGCTGG C G AGTGCAA A AA . . A . T . . . . . . TCGT .
blockSeqs : . C G G . . . . T . . . . . . G CAAAAATATAA A . . . TT . . A A AT . C . . . . . C A . T . . G CATTTC A T ATAATCA . G AT A AA . . T . T . . . . . . TCAT .
blockSeqs : . C A G . . . . T . . . . . . G ATTAATTATAC G . . . GA . . C T AA . . . . . . C T . T . . T TGCCTT T . GTAA . . . . . . . C . C . . . . . . TGAT .
blockSeqs : . C A T . . . . A . . . . . . A AAAAAATATAT G . . . GT . . A A CA . . . G A . C . . G TAT A . . . . . . C . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . G AAAAAGTATTC A . . . TA . . C A T . . . T . T . . T CG A . . . . . . .
blockSeqs : . . . . . . . T . . . . . . A AAAATTATAC A . . . GT . . A G A T .
blockSeqs : . . . T . . . . . . G AAAAGTATAC T . . . T . . A
blockSeqs : . . T . . . . . . G AAAAATATAC T . . . . . . T
blockSeqs : . . . . G AAATATCT G
blockSeqCons : T********* AAAAATATAC****************** A*********** G** CATCTT**** ATTCTAGTCAAG* C** *****
originalCons : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACA------T---GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCA-----AAAAAAATAA----TA--T-C-GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGC----------G-AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAGA-GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCG-T-TT---TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTNTAGT-C-AGAAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TCTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
finalCons : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATT----GATACAT---------GTC-------TATT-----AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTTCCAAAAATATAC------------------GAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGC-CTAGTAGAAAAT----GA-----ANGTAGAGCA-----------AAACAAAAAATGGCG---GACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAATGGGAG--GTTT-GGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCATCTT----TCTTAAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTCTAGTCAAG-AAAC--TAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TCTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCCATGATATATATACAGTATTTTAAGTTTGGCAACAAGCAA
Alignments
lowQualScore : 2222 111111 1111111111 1111111 11111111 111111111 111111111 1111 222222222222 1 1111 1111111 1111 1111 22222222222222 55555555555555555555 333333333333 11111 111111 11111111 44444444444444444
lowQualScore : 77 0 3 3 1 8888 55 000000 7777 2222222222 1111111 99999 666 3 3 0 3 3 00000000 3 888888888 555 88888 6666 1 444444444 1111 555 7777 99999 1 55 1 444444444444 2 1 0 6 5 9999999 66 0000 1 6666666 3 0000 0000 777 7 0 66 1 1 00000000000000 11111111111111111111 3 666666666666 77 22 99999 5 222222 0 66 66 77 11111111 00000000000000000 0
lowQualScore : .. . . . . .... .. ...... .... .......... ....... ..... ... . . . . . ........ . ......... ... ..... .... . ......... .... ... .... ..... . .. . ............ . . . . . ....... .. .... . ....... . .... .... ... . . .. . . .............. .................... . ............ .. .. ..... . ...... . .. .. .. ........ ................. .
lowQualScore : 99 4 9 7 9 3333 55 555555 7777 5555555555 8888888 11111 444 3 3 2 3 3 22222222 3 888888888 888 33333 7777 4 555555555 4444 333 7777 11111 0 00 4 444444444444 7 0 8 0 7 2222222 99 6666 0 2222222 1 6666 6666 999 6 8 99 0 4 33333333333333 55555555555555555555 2 000000000000 99 22 44444 0 888888 4 99 99 99 44444444 00000000000000000 4
consensus : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATTGAT----ACA------T---GTC-------TAT-----T---AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTT-CC---A-----AAAA---TA-----TA---CGAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGCCTA-GTAGAAAAT----GA-----ANG--TAGAGC-A----------AAACAAAAAATGGCGGACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAAT--GAG--AGG--TTTGGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCATCTTTCTT--AAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATT-TAGTCAAGAAACTAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TNTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
Reference ( family-1174 ) : TAAGGGTGG--GACGATCCATCGGTGCACCGATGCATCGTGAT----ACT--CATCTTGGCGATATAC------GGATTGAT----ACA------T---GTC-------TAT-----T---AAA-T-TACGATACCCGA-CAT-AGC-----G--TTTT-CC---A-----AAAA---TA-----TA---CGAACGTCACAAGTCGGGTAT---------TTT----TAGTCCGCCTA-GTAGAAAAT----GA-----ANG--TAGAGC-A----------AAACAAAAAATGGCGGACTACGTAACGTAACTTTCGACTGGAAGCAAGTC-GGG-AAAT--GGG--AGG--TTTGGCTT----GCCATTCTACGAAAGTGNA-------AACGGTG----TA----AN--AAACATCATCTTTCTT--AAGAAGAATTTGTGAAGTTTTTGGAGCNTCGTGAGATCTATTTTATTCTAGTCAAGAAACTAGCTGA----AGTG---------CGAGTTGAATAAATTT------AA--TCTTT--TTTTCCT-----AG-TTTT------TATTGATATGCAA--AGTAT--CACG--ATATGTATCGTATCGT----GTGTCAAATATCGTGATAC-----------------GTATCGGTTCGGCTAGAAAGGGTA
gi|1 : TAAGGGTGG--GGTGATCCATCGCGGCACTGATACATCGTGAC----ACT--CATCTTAACAATATAC------AGATTGAT----ACAACTTTGTCAAGTC-------TAT-----T---CAA-T-TACGATACCCGA-CAT-AGC-----A--TTTT-CC---A-----AAAAAAATAAAAAATAATTTGAACACTACAAGTTGGATAT---------TTT----CAGTCTGCCTA-GAAGAGAGT----GA-----AAG--TAGAAC-CT---------AAATAAAAAATGGCAGACTACATAACGTAACTTTCAACTGGAAGCAAGTCAGGG-AAAT--GGG--AGAATTTTGGCTT----GCCATTCTACAAAAGTGAA-------AATGGTG----TA----AG--AAACATCAT-TTTCTT--GAGAAGAATTTGTGAAGTTTT-GGAGCATCGTTAGATCTATTTTATTATAGTCTAAAACCTTACTGA----AGTG---------CGAGTTGAATCAATTT------GA--TTTTT--TTTCCCTTTTATAG-GTTT------TATTGATATGCAA--AGTAA--CACG--ATATGTATCGTATCGT----GTGTCAAACATCGTGATAC-----------------ATATCGGTTCCGCTACAAAGGGTA
gi|10 : TAAGGGTTGAAGATGATCCAATGGTGCAACGATGCATCACGATCGATACT--CATCTTGATGACATAT------GGATTGAT----ACA------T---GTCTATATAGTAT-----T---AAATT-TACGATATCATG-CAT-AGT-----G--TTTTACC---A-----AAAA---TA-----TA---AGGACATGACAAAGTGGATAT---------CTA----AAGTCCACCTA-GTTGAAAA-----AA-----ATG--TAGA
gi|11 : taatatgtggtaatagaATCTTGGCAATATACCTATATGGGTTGAT----ACA------T---GTC-------AATTGCCGT---AAA-T-TGCAATACCTGG-CAA-ATT-----G--TTTT-CCCCAA-----AAAA---TA-----TA---TGAACATaa
gi|12 : TTCCT-----AG-ATTT------TATTGATATACAA--AGTAT--CACA--ATATGTATCAT---------GTGTCAGATATCGTGATAC-----------------ATAACGATTTGGCTAGAAAGGGTAaattaagaacacattagttgttgtttatttagcaa
gi|13 : catgaacatatatttcacatcgAA-T-TATGATAACCGATCAT-AAC-----GCATTTT-CC---A-----AAAT---TA-----TA---CAAACGTCACAATTCAGGTAT---------TTT----TAGTCCGCCTA-CTAGAAAAT----TA-----ATG--CATAAC-A----------AAATAtcgtcccaccc
gi|14 : TT------TATTGATATGCAA--AGTAT--CAAG--ATATTTATCGTATTGT----GTGTTAAAAATTGTGATAT-----------------GTATAAGTTCAGCAAGAAAGGGTAggaggtttggcctaat
gi|15 : TATCATATCGT----GTGTCAAATATCGTCATGC-----------------ATATCGGTTCACCTAGATAGGGTAtagcgatcatcccacccct
gi|2 : AAGGATGG--GATGATCCATCAGT----C----CATTGTGAT----ACT--CTTCTTGATGATATAT------AGATTGAT----ACA------A---GTC-------TAT-----C---AAA-T-TATGACACCTGA-CAT-AGC-----A--TTTT-CA---T-----TAAT---TA-----TA---CGATCATCACAAGTCGGGTAT---------TTT----TAGATTGCCTA-GTAGAAAAT----AA-----AAG--CAGAGC-AGAGATTATAGAAACAAAAAATGGCAGACAACTTAATGTAACTTTCAACTAGAAGCAAGTC-AAG-AAAT--AAG--AGG--TTTGGCTT----GTCATTCTATGAAAGTGAA-------AAAGGTG----CA----AG--AAACATCG----------AAGTAGAATTTGTGAAGTTTTTCGAGCATCGTTAGATCTATTTTA------------AACTAGCTGA----TGCA---------CAGGTTGAATAAATTTAAAAAAAA--AATT--------CT-----AG-TTTT------TATTAATATGCAA--AGTATCCCACG--ATATGTATCATGTCAT----GTGTCAAATATCATGATACGTAATGTATCATGTCATGTATCAGTTCAGCTAGAAAGGGTAaagttccacccc
gi|3 : TAAGGGTGG--GACGGTCCATCGGTGCA--------TCGTGAT----ACT--CATGTTTACAATATAC------GGATTGATCGATACA------T---GTC-------TAT-----TTAAAAA-T-CATGATGCCCCA-CAT-AGC-----G--TTTT-CC---A-----AAAG---TA-----TA---CGAATGTCACAAGTCGAGTAT---------TTTTAGCTAGTCCACCTA-TTAGGAAAT----GA-----AAGGCT---GC-A----------AACCAAAAAttgtcccatccct
gi|3 : tagtattgttgcaga-AAAT--G----ATG--TTTGACTTCATTGTCATTCTACGAAATTGTA-------AACAATG----TACATAATTTAAGCATCATCTCTCTTTTAAGAAGAATTTGTTAAGTTTTTGGAGCTTCATGAGATtgatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|3 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaATAACTTT------GACATCTTT--TTTTC-T-----AG-TTTTATTCAATATTGATATGTAATTAGTAT--CACG--ATATGTATTGTATCATACATGTGTCAAATATCGCAATAC-----------------GTATTGATTTGGCTAGAAAGGGTAaatagataactttgacatctttttttctagttttattcaatattgatatgtaattagtatcacgatatgtattgtatcatacatgtgtcaaatatcgcaatacgtattgatttggctagaaagggtatggtcccacccc
gi|4 : tagtattgttgcagataagggtgggacggtccatcggtgcatcgtgatactcatgtttacaatatacggattgatcgatacatgtctatttaaaaatcatgatgccccacatagcgttttccaaaagtatacgaatgtcacaagtcgagtatttttagctagtccacctattaggaaatgaaaggctgcaaaccaaaaatgatgtttgacttcattgtcattctacgaaattgtaaacaatgtacataatttaagcatcatctctcttttaagaagaatttgttaagtttttggagcttcatgagataatagTAAGGGTGA--GGCGATCCATGGGTGCACCAATACATCATGATACTAACT--CCTTTTGGCGATATGC------GGATCGAT----ACA------T---GCC-------CAT-----T---TAA-TATACGATA-------AT-AGC-----GT-TTTT-CC---ACATACAAAA---AA-----AA---AGAA-GTTTCAAGTCGGATAT---------ATT----TAGTCTGCGTA-GAAGAAAAT----TA-----ACA--TAGA---A----------AAAtggtcccacccc
gi|4 : G-AAAA--AAG--GGG--TTTGGCTT----GCGATTCTACAAAAGTGTA-------AATAGGG----TA----AT--AAACATTATCTTTCTC--AAGAACAATTTGTAAAGTCTTTGGAGCTTTACGAGATACAT---------GT-AAAAA--TAACT-----------------------------AAATTT------TA--TATCT--TGTTTCT-----AG-TTTT------TATTGGTTCGCAG--AGTAT--CACG--ATATGCATCGTA---------TGTCAAATA---TGATAC-----------------GTATCGATTTGGAGAGAAAGGGTAaggggtttggcttgcgattctacaaaagtgtaaatagggtaataaacattatctttctcaagaacaatttgtaaagtctttggagctttacgagatacatgtaaaaataactaaattttatatcttgtttctagtttttattggttcgcagagtatcacgatatgcatcgtatgtcaaatatgatacgtatcgatttggagagaaagggtatcgtcccacccct
gi|5 : taagggtgaggcgatccatgggtgcaccaatacatcatgatactaactccttttggcgatatgcggatcgatacatgcccatttaatatacgataatagcgtttttccacatacaaaaaaaaagaagtttcaagtcggatatatttagtctgcgtagaagaaaattaacataGGTGGGACGATGTATCATGAT----ACT--CATCTTAATGATATAT------GGATTGAT----ACA------A---GTC-------TGT-----T---AAA-T-TGTGATACCTGA-CAT---C-----A--TTTT-AC---A-----AAAA---TA-----TA---CGAACATCACAAGCCGGGTAT---------TTT----TTCTCCGCTTTTGTAGAAAAT----GA-----GAG--TAGAACTA----------AAATAAAAA-TGGCAGACTACATAACGTAATATTTGACTGGAAGC--------G-AAATTGGAG--AGG--TTTTGCTT----GC-ATTCTGCAATAGTGAA-------GATGGTG----TA----AG--AAACATTAT---TCTT--AAGAAG-----------TTCTAGGAGCATCGTTAGATCTGTTTTATTGTAGTCAAGAAACTAGCTGA----AGTG---------CAAGTTGAATAAATTTAA----AA--TTTTTTGTTTTTCTCA---AG-CTTT------TATTGATATGCAA--AGTAT--CAtcgtcccacccct
gi|6 : agTAAGGGTGG--GACGATCCATTGGTGCACTGATGCATCGTTAT----ACGGGCATCTTGGCGAAATAT------GGATCGAT----GCA------T---GTC-------TAT-----T---AAA-T-TATGATACCGGA-CATAAGCATAATG--TCTT-CCA--A-----AAAA---TA-----TA---TGAGCATCACAAGTCAGGTAT---------TTT----TAGTCTACT----TAGAAAAT----GA-----ACA--TAGAAC-A----------AAAT---AAATGGTGTAATAAGCATCAT--CTTTCt
gi|6 : ttagtgtgtgctatagatatACAAAA---TA-------AATGGTG----TA----AT--AAGCATCATCTTTCTC--AAGAAGAGTTTGTGAAGTTTTTGGAGCTTCATGAGA--TA----A---TAATCA---------TTGA----A-T--------------TTG---AAATCT------------TTT--TTT--CT-----AG-TT----------TTGAT-TGCAA--AGTAT--CACGATATATATATTGTATGAT----GTGTCAAGTATTGTGATtcaagaagagtttgtgaagtttttggagcttcatgagataataatcattgaatttgaaatctttttttctagttttgattgcaaagtatcacgatatatatattgtatgatgtgtcaagtattgtgat
gi|7 : ttagtgtgtgctatagatattaagggtgggacgatccattggtgcactgatgcatcgttatacgggcatcttggcgaaatatggatcgatgcatgtctattaaattatgataccggacataagcataatgtcttccaaaaaatatatgagcatcacaagtcaggtatttttagtctacttagaaaatgaacatagaTAAGGGTGG--GATGATCCATTGGTGCACCAATGCATCATGAT----ACT--CATCTTGGCGATAGAT------GGATAGAT----ATA------T---ATC-------TAT-----T---TAA-T-TATGATATCCTA--AT-AAT-----G--TTTT-CT-----------AA---T------TA---TG-ATATCCTTAGGCTAATGT---------TTT------------CT-----GAAAATATACGAATCACAAG--TTGGGT-A----------AAAAAAAACATGGTGGACTACGTAACATAACTTTTGACTGGAAGCAAGTC-GGGAAAAT--GAG--A-------GGCTT----GCCATTCGAC
gi|7 : GACTTTATGAAGTTTTTGGAACATCATGATATCTATTTTATTCTGGTAAAGAAACTAGCTGAACCGAGTGATAATTTACTGAGCTGAATA-----------AA--TCTTT--TTCTCCT-----AGTTTTT------TATTGAtttatgaagtttttggaacatcatgatatctattttattctggtaaagaaactagctgaaccgagtgataatttactgagctgaataaatctttttctcctagttttttattgac
gi|8 : taagggtgggatgatccattggtgcaccaatgcatcatgatactcatcttggcgatagatggatagatatatatctatttaattatgatatcctaataatgttttctaattatgatatccttaggctaatgttttctgaaaatatacgaatcacaagttgggtaaaaaaaaacatggtggactacgtaacataacttttgactggaagcaagtcgggaaaatgagaggcttgccattcT--TATCTTAGCGATATAC------GGATTGAT----ACA------T---GAT-------TAT-----T---GAA-T-GACGATACCCGA-CAT-AGT-----G--TTTT-CC----------AAA---TA-----TC---TGAATTTCACACGTCGGGTA----------TTT----TAGTCCGCCTA-TAAGAAAAT----GA-----AAG--TAGGGG-G----------A---AAAACATGGCGGACTGCGTAACAAAA---TTGACTAGAAGCAAGTCTGGG-AAAT--GGGAAAGG--TCTAGCTT----GCCATT-TATGGAAGTGAAAACCATTAACAGTG----TA----AG--AGACATCATTTCTTTT--ATAAAGAATTTCTGAAGTTTTTGGAGCACTGTGATATTTGTTTTATTCTAGc
gi|9 : aagggtgggacaaaaGTGTACCAATTCATCATGATCGATACT--CATCTCGGCGATATAC------GGATTAAT----ACA------T---GTT-------TAT-----T---AAA-T-TACGATACCCGA-CAT-TGC-----G--TTTT-CA---A-----AAAG---TA-----TT---CAAATGTCACAAGTCGGGTATCAGTACGTATTTG---TGGCCCGTCTA-GTAGAAAAT----GA-----ATG--TAGAGCAA----------AAACAActggaccgagtgatatttt
gi|9 : --AGG--CTTGGTTT----GGCGTTCTACGAAAGTGTA-------AATGGTGCACATG----AT--AAACATTGCCTTTCTT--AAGAAGAA-TTGTGAAGTTTTTTGATCTTCATGAGATggcttggtttggcgttctacgaaagtgtaaatggtgcacatgataaacattgcctttcttaagaagaattgtgaagttttttgatcttcatgagata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCCATGATATATATACAGTATTTTAAGTTTGGCAACAAGCAA