lowQualScore : 111111 11111111 3333333333333333333 1 222222222222 111 111 2 11111 111111 11111111 1 11 11 11 333333 3333333 11 11 2 3 11 1 4444 444444444444
lowQualScore : 4 4 88888 555 2 000000 2 99999999 2 2222222222222222222 3 4 0 222222222222 222 8 111 0 7 2 3 00000 4 111111 66666666 4 9 8 11 11 11 333333 5555555 11 0 11 3 1 6 3 5 33 0 3333 999999999999
lowQualScore : . . ..... ... . ...... . ........ . ................... . . . ............ ... . ... . . . . ..... . ...... ........ . . . .. .. .. ...... ....... .. . .. . . . . . .. . .... ............
lowQualScore : 0 0 22222 111 7 333333 7 33333333 7 8888888888888888888 6 0 5 222222222222 555 0 999 7 7 5 0 00000 0 555555 88888888 4 0 4 22 00 00 000000 4444444 00 8 00 2 0 7 7 8 88 0 4444 333333333333
consensus : ATGTTG-AAAAGTG-G---G-AA-TTCAGC-GA------CA-CCAG--------CTGGTGTCGCTG-CT-----CT--GC---CTA-CCTTTTACAA-CTT-TATTTCGCGGATCTAT-CT-TCC--AGGACGCGA---GGATT-AAGTC--NTCGGATGATTATT-CTACAAATAAATCAT-----AATT-A------ATAC--------GATGCT-ATCGCCGTTTTAAACGGCCCTAACACCGA--CA--AAT-N-A-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-TGACG-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCGTAT--------T--AATTATGATTTACTA
Reference ( gi|2 ) : ATATTG-AAAAGTG-G---G-AA-TTCAGC-GA------CA-CCAG--------CTGGTGTCGCTG-CT----GCT--GA---CTA-ACTTTTACAA-CTT-TATTTCCCGGATCTAT-CT-TCC--A-GACGCGA---GGATT-AAGTC--TTCGGATGGTTATTTCTACAAGTAAATCAT-----AATT-A------ATAC--------GATGCT-ATCGCCGTTTTAAACGACCCTAACACCGA--CA--AAT-C-A-GCCTCA--GTTTTGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCATTGACGTTCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGGATTAGCATCGTA---------T--AATTATGATTTACTA
gi|1 : ATATTG-AAAAGTG-G---G-AA-TTCAGC-GA------CA-CCAG--------CTGATGTCGCTG-CT-----CT--GC---CTA-CCTTTTACAA-CTT-TATTTCGCGGATTTAT-CC-TCC--AGGACGCGA---GTGTT-AAGTC--ATCGGATGATTA-TTCTACAAGTAAATCAT-----AATT-A------ATAC--------GATGCT-ATCGCCG-TTGAAACAGCCCTAACACCGA--CA--AATGA-A-GCCTCA--A-TTCGAATTAGGT--CGATTCCTCGTTTTATT--ATTTTTTTTGCACATT-ATG-TCAGCACA--TAAACACA-CAAAATTCTAGTTTAAACGGCGA--TAGCATCGTAT--------T--AATTATAATTTATTA
gi|3 : acatgtgcgggggaagaataagagcggactccATGTTG-AAAAGTG-G---G-AAATTCAGC-GA------CA-CCAGGCACCAGCCTGGTGTCGCTG-CT-----CT--GT---CAA-CCTTTTACCA-TTT-TATTTCGCAGAAATACACTGTTT--A-GATGTGATT-GAATTCAAAAC--TTCTG--GGTT-----------TAAATTATCTTCAAATT-A------ATACA-------AATGGT-AT
gi|14 : tgacatgagtcggggaggaatcatagagcggactccATAT-G-ACAAGTG-G-----AA-CT-AGC-GA-------A-GCAC--------TTG----CGCTG-TT-----TT--GC---CTA-CTTTTTACAA-C---TATTAGACGGATCTtacttta
gi|7 : gtacggaaatagagcacgtccTGTTG-AAAAGTG-G---G-AA-TTCAGC-GACACCAGCA-CCAG--------CTGGTGTCGCTG-CT-----CT--GT---CAA-CCTTTTACAA-TTT-TATTTCGCAGAAATA--CC-TGT--A-GATGTGATTTGAATTCAAAAC--TTC---TGGGTATT--TA-AATTACTTCA------AATT-A------ATAC--------AA
gi|11 : TTGTAAAAGTA-G---GCAG-AGCAGC-GA------CA-CCAG--------CTGGTGTCG----------GCT--GATT-CCACACTTTTatggta
gi|12 : tgTTG-AAAAGTG-G---G-AA-TTCTGG-GA------CA-CCAG--------CCGGTGTCGCTA-CT-----CT--GT---CTA-CCTTTTACAA-CTT-TACTTTGCG------------------GACGTGA---GGATT-AAGTC--ATCGTATGATTATTctttatttaccggatctcttttccaggacgcgaggattaagtcatcggatgattattc
gi|16 : TTG-ATAATCT-G---G-A---TCACC-GAG-----CATCCAG--------C-GGTGTCGCTG-C-----GCTCTGC---CTA--CCTTTACAAACTTCTATTTCCTGGATCTAct
gi|1 : ttcTA-AAAGGTA-G---GCAG-AGCAGC-GA------CA-TCAG--------CTGGTGTCGCTG-
gi|11 : acatgtgcgggggaagaataagagcggactccatattgaaaagtgggaattTG-AAAAGTGTG---G-AA-T-CAGCCGA------CA-CCAG--------CTGGTGTCGCTG-CT-----CT--GC---CTA--CTTTTACAA-CTT-TATTTACCGGATCTCT-TT-TCC--AGGACGCGA---GGATT-AAGTC--ATCGGATGATTATTcaactttatttcgcggatttatcctccaggacgcgagtgttaagtcatcggatgattattctacaagtaaatcataattaatacgatgctatcgccgttgaaacagccctaacaccgacaaatgaagcctcaattcgaattaggtcgattcctcgttttattattttttttgcacattatgtcagcacataaacacacaaaattctagtttaaacggcgatagcatcgtattaattataatttatta
gi|12 : TA-AAAGGTA-GACAG-AG-T--AGC-GA------CA-CCGG--------CTGGTGTCc
gi|13 : ttgaaaagtgggaattctgg---G-AA-TTCAGC-GA------CA-CCAA--------CTGGTGTCGCTG-CT-----CT--GC---TTA-TCTTTTACAA-CTT-TATTTTGTGTATCTAT-CT-TCC--AGGATGCAA---TAATT-CAGTT--ATCGGATGcaactttactttgcggacgtgaggattaagtcatcgtatgattattct
gi|4 : -TTCTGT-GA------CA-CCAA--------GCGGCGTCGCTGGCTTAACATT--GC---CTA-CCTTTTACAA-CTT--ATTTTGTGGATCTA--CA-TCCTAA-GATCCAA---GGATC-A-GTTAATT--GACAGCCATT-CTACTCATAAATCAT-----GACT-A------ACAC--------AATGCT-ATa
gi|13 : gggggggcttcgagcagatgccattttaaatattagggttcgCAGC-GA------CA-CCAG--------TTGGTGTCGCTG-tcc
gi|7 : gaattCAGC-GA------CA-CCAG--------CTGGTGCTGGTG-TC----GCT--GAATTCCC-ACTTTT-CAA-Cctctgcttatcttttacaactttattttgtgtatctatcttccaggatgcaataattcagttatcggatga
gi|3 : tCAGC-GA------CA-CCAGGCTGGTGCCTGGTGTCGCTG-ctctgtcaaccttttacaattttatttcgcagaaatacctgtagatgtgatttgaattcaaaacttctgggtatttaaattacttcaaattaatacaaatggta
gi|15 : tgacatgagtcggggaggaatcatagagcggactccatgttgaaaagtgggaaattTCGCTG-CT-----CT--GC---CTA-CCTTTTACAG-CTT-TATGTCACGAATCTAC-CT-CTC--AGGACACGA---GGATT-CAGTT--TTCGGATGATTATTctctgtcaaccttttaccattttatttcgcagaaatacactgtttagatgtgattgaattcaaaacttctgggtttaaattatcttcaaattaatacaaatggtattacttta
gi|8 : TTCGCGGATCTAT-CT-TCCA-A-GACGCGA---GGATC-AAGTC--GTC
gi|18 : gacatgtgagggggagagtcagagcggactctacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GACGTGA---GAATT-CAGTT--ATCGGATAATTATT-CTACAAATCAATCAT-----GACT-A------ATAC--------G
gi|17 : gTCGGATAATTATT-CTACAAATCAATCAT-----GATT-AATAGTTATAC--------GATGCT-GTTGCTG-TGTAAATT-CTCTAACATCAA--CA--A
gi|5 : AAGTAAATCAT-----AATT-A------ATACATTTGTACGATGCT-ATCGCCGTTT-AAACGACCCTAACACCAA--CA--AAT-CAA-GCCTCA--G-TTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-TGACG-TCAGCACA--TAAACACA-CAAAATTACAGTTTAAACGGCGA--TAGCATCG
gi|1 : AATAAATTAT-----AATT-A------ATAC--------GATGCT-ATCGCCG-TTTAAAC
gi|6 : acatgtgcgggggaagaataagagcggactccatattgaaaagtgggaattcagcgacaccagctgatgtcgctgctctgcctaccttttacaactttatttcgcggatttatcctccaggacgcgagtgttaagtcatcggatgattattctacaagtaaatcataattaatacgatgctatcgccgttgaaacagccctaacaccgacaaatgaagcctcaattcgaattaggtcgattcctcgttttattattttttttgcacattatgtcagcacataaacacacaaaattctaAATAAATCAT-----AATTTA------ATAC--------GATGCTAATAGCCGTTa
gi|10 : ttaaacggcctaaaccgatccatgaaagcctcagttcgaattaggtgacgctttatcgcattcgatttctttgcgcattgaccgtcagcacataaacacaccaaaattccagttctAGTATATCAT-----GATC-A------ATAT--------GATGCT-ATCGCCATTT-AAACAGTCCTAACACTGA--AA--AAT-G-AAGCCTCACAGTTC-GAATTAGGT--TGCCTCCTCG--CCATTCGA-TTGCTTTGCGCA-TGACG-TCAGTAg
gi|5 : C--------GATGCT-ATCGCCG-TTTAAAC
gi|6 : aagtaaatcataattaatacatttgtacgatgctatcgccgtttaaacgaccctaacaccaacaaatcaagcctcagttcgaattaggtcgcttcctcgccattcgatttctttgcgcatgacgtcagcacataaacacacaaaattacaTTAAACGGCC-TAA-ACCGATCCATGAA----A-GCCTCA--GTTC-GAATTAGGTGACGCTTTATCG--C-ATTCGA-TTTCTTTGCGCATTGACCGTCAGCACA--TAAACACACCAAAATTCCAGTTCTAACGGC-TATTAGCATCGTA---------TTAAATTATGATTTATT
gi|9 : CTCA---CTTCGAATTAGGT--CGCT-CTTCA--CCTTTCGA-TTTCTTTGCGCA-TGACG-TCAATATATTTAAACACA-CAAAATTCCATGATAAATGAT-GATT-GCATTGTA---------C--AATg
gi|20 : ATTTGA-TTTCTTTGCGCA-TGATG-TCAGCACgtaatactattaatcatgatctacttgt
gi|1 : GTTTCAACGGCGA--TAGCATCGTA---------TT-AATTATGATTTACT
gi|5 : acatgtgcgggggaagaataagagcggactccatattgaaaagtgggaattcagcgacaccagctgatgtcgctgctctgcctaccttttacaactttatttcgcggatttatcctccaggacgcgagtgttaagtcatcggatgattattctacaGTTTAAACGGCGA--TAGCATCGTACAAATGTATT--AATTATGATTTACTagccctaacaccgacaaatgaagcctcaattcgaattaggtcgattcctcgttttattattttttttgcacattatgtcagcacataaacacacaaaattctagtttaaacggcgatagcatcgtattaattataatttatta
gi|10 : aGTTTAAATGGCGA--TAGCATCATAT--------T--GATCATGATATACTgaccctaacaccaacaaatcaagcctcagttcgaattaggtcgcttcctcgccattcgatttctttgcgcatgacgtcagcacataaacacacaaaattacagtttaaacggcgatagcatcg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TGACAGTGCGGGGGCGAGTCACCGAAGCTGCACTC
Alignments
lowQualScore : 111111 11111111 111111 11111111 1 1 22 111111 11 11 4444444444444 1
lowQualScore : 5 4 4 4 4 111111 44444444 3 55 3 99999 3 3 4 0 777 4 1 4 1 444444 88888888 0 1 3 99 77 888888 99 99 1 5 5 5 5 5 11 8 99 4444444444444 3 0
lowQualScore : . . . . . ...... ........ . .. . ..... . . . . ... . . . . ...... ........ . . . .. .. ...... .. .. . . . . . . .. . .. ............. . .
lowQualScore : 0 0 0 0 0 555555 55555555 6 00 6 11111 6 6 4 1 000 0 0 4 8 444444 11111111 6 3 7 00 00 333333 22 22 0 7 7 7 7 7 00 0 00 0000000000000 2 0
consensus : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCT-TCCAGGACGCGA---GGATT-AAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAAT-NAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
Reference ( family-1061 ) : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCT-TCCAGGACGCGA---GGATT-AAGTCNTCGGATGATTA-TTCTACAAATAAATCATAATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAAT-NA--GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
gi|1 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGATGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATTTATCC-TCCAGGACGCGA---GTGTT-AAGTCATCGGATGATTA-TTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCG-TTGAAACAGCCCTAACACCGACAAATGAA--GCCTCA--A-TTCGAATTAGGT--CGATTCCTCGTTTTATT--ATTTTTTTTGCACA-T-TAT-G-TCAGCACA--TAAACACA-CAAAATTCTAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATAATTTATTA
gi|10 : acatgtgcgggggaagaataagagcggactccAGTATATCATGATCA------ATAT--------GATGCTATCGCCATTT-AAACAGTCCTAACACTGAAAAAT-GAA-GCCTCACAGTT-CGAATTAGGT--TGCCTCCTCG--CCATTCGA-TTGCTTTGCGCA-T-GAC-G-TCAGTA
gi|11 : TGAAAAGTGTGGAA-T-CAGCCGA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTAC-TTTTAC-AACTT-TATTTACCGGATCTCTTT-TCCAGGACGCGA---GGATT-AAGTCATCGGATGATTA-TTC
gi|12 : TTGAAAAGTG-GGAA-TTCTGG-GA-CA-CC------AG--------CCGGTGTCGCTA-C--T-C-----TGTCTACCTTTTAC-AACTT-TACTTTGC---------------GGACGTGA---GGATT-AAGTCATCGTATGATTA-TTCT
gi|13 : GAA-TTCAGC-GA-CA-CC------AA--------CTGGTGTCGCTG-C--T-C-----TGCTTATCTTTTAC-AACTT-TATTTTGTGTATCTATCT-TCCAGGATGCAA---TAATT-CAGTTATCGGATGA
gi|14 : TGACAAGTG-G-AA-CT-AGC-GA--A-GC------AC--------TTG----CGCTG-T--T-T-----TGCCTACTTTTTAC-AAC---TATTAGACGGATCT
gi|15 : gtacggaaatagagcacgtccataTCGCTG-C--T-C-----TGCCTACCTTTTAC-AGCTT-TATGTCACGAATCTACCT-CTCAGGACACGA---GGATT-CAGTTTTCGGATGATTA-TT
gi|16 : TTGATAATCT-GGA---TCACC-GAGCATCC------AG--------C-GGTGTCGCTG-CGCT-C-----TGCCTACC-TTTACAAACTTCTATTTCCTGGATCTA
gi|17 : ttcTCGGATAATTA-TTCTACAAATCAATCATGATTAATAGTTATAC--------GATGCTGTTGCTG-TGTAAAT-TCTCTAACATCAACAA
gi|18 : GGACGTGA---GAATT-CAGTTATCGGATAATTA-TTCTACAAATCAATCATGACTA------ATAC--------G
gi|2 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--TGC-----TGACTAACTTTTAC-AACTT-TATTTCCCGGATCTATCT-TCCA-GACGCGA---GGATT-AAGTCTTCGGATGGTTATTTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCGTTTTAAACGACCCTAACACCGACAAAT-CA--GCCTCA--GTTTTGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCATT-GAC-GTTCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGGATTAGCATCG-------------TA-T-AATTATGATTTACTA
gi|20 : ATTTGA-TTTCTTTGCGCA-T-GAT-G-TCAGCAC
gi|3 : ATGTTGAAAAGTG-GGAAATTCAGC-GA-CA-CC------AGGCACCAGCCTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-CATTT-TATTTCGCAGA
gi|4 : tgacatgagtcggggaggaatcatagagcggactcc-TTCTGT-GA-CA-CC------AA--------GCGGCGTCGCTGGC--T-TAACATTGCCTACCTTTTAC-AACTT--ATTTTGTGGATCTACAT-CCTAAGATCCAA---GGATC-AGTTAATTG-ACAGCCA-TTCTACTCATAAATCATGACTA------ACAC--------AATGCTATaatacactgtttagatgtgattgaattcaaaacttctgggtttaaattatcttcaaattaatacaaatggtattacttta
gi|5 : gggggggcttcgagcagatgccattttaaatattagggttcgAAGTAAATCATAATTA------ATACATTTGTACGATGCTATCGCCGTTT-AAACGACCCTAACACCAACAAAT-CAA-GCCTCA--GTT-CGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTACAGTTTAAACGGCGA--TAGCATCG-------------tcc
gi|6 : TTAAACGGCC-TAA-ACCGATCCAT-GAAAGCCTCA--GTT-CGAATTAGGTGACGCTTTATCG--C-ATTCGA-TTTCTTTGCGCA-TTGACCG-TCAGCACA--TAAACACACCAAAATTCCAGTTCTAACGGCTAT-TAGCATCG-------------TATTAAATTATGATTTATT
gi|7 : TGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CCAGCACCAG--------CTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-AATTT-TATTTCGCAGAAATACCTGT---AGATGTGATTTGAATTCAAAACTTC---TGGGTA-TT-TA-AATTACTTCA-AATTA------ATAC--------AAg
gi|8 : TTCGCGGATCTATCT-TCCAAGACGCGA---GGATC-AAGTCGTCatggta
gi|9 : gacatgtgagggggagagtcagagcggactctacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCA---CTTCGAATTAGGT--CGCT-CTTCA--CCTTTCGA-TTTCTTTGCGCA-T-GAC-G-TCAATATATTTAAACACA-CAAAATTCCATGATAAATGATGA--TTGCATTGTACAATGTAATACTATT-AATCATGATCTACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGACAGTGCGGGGGCGAGTCACCGAAGCTGCACTC
Alignments
lowQualScore : 111111 11111111 111111 22222222 1 1 111111 11 11 4444444444444 1
lowQualScore : 5 4 4 4 4 111111 44444444 3 55 3 99999 3 3 5 666666 00000000 0 1 3 11 8 888888 99 99 1 5 5 5 5 5 11 8 99 4444444444444 3 0
lowQualScore : . . . . . ...... ........ . .. . ..... . . . ...... ........ . . . .. . ...... .. .. . . . . . . .. . .. ............. . .
lowQualScore : 0 0 0 0 0 555555 55555555 6 00 6 11111 6 6 0 444444 77777777 6 3 7 88 0 333333 22 22 0 7 7 7 7 7 00 0 00 0000000000000 2 0
consensus : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATGAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
Reference ( family-1061 ) : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATNAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
gi|1 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGATGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATTTATCCTCCAGGACGCGAGTGTTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCG-TTGAAACAGCCCTAACACCGACAAATGAA-GCCTCA--A-TTCGAATTAGGT--CGATTCCTCGTTTTATT--ATTTTTTTTGCACA-T-TAT-G-TCAGCACA--TAAACACA-CAAAATTCTAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATAATTTATTA
gi|10 : acatgtgcgggggaagaataagagcggactccAGTATATCATGATCA------ATAT--------GATGCTATCGCCATTT-AAACAGTCCTAACACTGAAAAATGAA-GCCTCACAGTT-CGAATTAGGT--TGCCTCCTCG--CCATTCGA-TTGCTTTGCGCA-T-GAC-G-TCAGTA
gi|11 : TGAAAAGTGTGGAA-T-CAGCCGA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTAC-TTTTAC-AACTT-TATTTACCGGATCTCTTTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTC
gi|12 : TTGAAAAGTG-GGAA-TTCTGG-GA-CA-CC------AG--------CCGGTGTCGCTA-C--T-C-----TGTCTACCTTTTAC-AACTT-TACTTTGC--------------GGACGTGAGGATTAAGTCATCGTATGATTA-TTCT
gi|13 : GAA-TTCAGC-GA-CA-CC------AA--------CTGGTGTCGCTG-C--T-C-----TGCTTATCTTTTAC-AACTT-TATTTTGTGTATCTATCTTCCAGGATGCAATAATTCAGTTATCGGATGA
gi|14 : TGACAAGTG-G-AA-CT-AGC-GA--A-GC------AC--------TTG----CGCTG-T--T-T-----TGCCTACTTTTTAC-AAC---TATTAGACGGATCT
gi|15 : gtacggaaatagagcacgtccataTCGCTG-C--T-C-----TGCCTACCTTTTAC-AGCTT-TATGTCACGAATCTACCTCTCAGGACACGAGGATTCAGTTTTCGGATGATTA-TT
gi|16 : TTGATAATCT-GGA---TCACC-GAGCATCC------AG--------C-GGTGTCGCTG-CGCT-C-----TGCCTACC-TTTACAAACTTCTATTTCCTGGATCTA
gi|17 : ttcTCGGATAATTA-TTCTACAAATCAATCATGATTAATAGTTATAC--------GATGCTGTTGCTG-TGTAAAT-TCTCTAACATCAACAA
gi|18 : GGACGTGAGAATTCAGTTATCGGATAATTA-TTCTACAAATCAATCATGACTA------ATAC--------G
gi|2 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--TGC-----TGACTAACTTTTAC-AACTT-TATTTCCCGGATCTATCTTCCA-GACGCGAGGATTAAGTCTTCGGATGGTTATTTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCGTTTTAAACGACCCTAACACCGACAAATC-A-GCCTCA--GTTTTGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCATT-GAC-GTTCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGGATTAGCATCG-------------TA-T-AATTATGATTTACTA
gi|20 : ATTTGA-TTTCTTTGCGCA-T-GAT-G-TCAGCAC
gi|3 : ATGTTGAAAAGTG-GGAAATTCAGC-GA-CA-CC------AGGCACCAGCCTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-CATTT-TATTTCGCAGA
gi|4 : tgacatgagtcggggaggaatcatagagcggactcc-TTCTGT-GA-CA-CC------AA--------GCGGCGTCGCTGGC--T-TAACATTGCCTACCTTTTAC-AACTT--ATTTTGTGGATCTACATCCTAAGATCCAAGGATCAGTTAATTG-ACAGCCA-TTCTACTCATAAATCATGACTA------ACAC--------AATGCTATaatacactgtttagatgtgattgaattcaaaacttctgggtttaaattatcttcaaattaatacaaatggtattacttta
gi|5 : gggggggcttcgagcagatgccattttaaatattagggttcgAAGTAAATCATAATTA------ATACATTTGTACGATGCTATCGCCGTTT-AAACGACCCTAACACCAACAAATCAA-GCCTCA--GTT-CGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTACAGTTTAAACGGCGA--TAGCATCG-------------tcc
gi|6 : TTAAACGGCC-TAA-ACCGATCCATGAAAGCCTCA--GTT-CGAATTAGGTGACGCTTTATCG--C-ATTCGA-TTTCTTTGCGCA-TTGACCG-TCAGCACA--TAAACACACCAAAATTCCAGTTCTAACGGCTAT-TAGCATCG-------------TATTAAATTATGATTTATT
gi|7 : TGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CCAGCACCAG--------CTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-AATTT-TATTTCGCAGAg
gi|8 : TTCGCGGATCTATCTTCCAAGACGCGAGGATCAAGTCGTCaatacctgtagatgtgatttgaattcaaaacttctgggtatttaaattacttcaaattaatacaaatggta
gi|9 : gacatgtgagggggagagtcagagcggactctacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCA---CTTCGAATTAGGT--CGCT-CTTCA--CCTTTCGA-TTTCTTTGCGCA-T-GAC-G-TCAATATATTTAAACACA-CAAAATTCCATGATAAATGATGA--TTGCATTGTACAATGTAATACTATT-AATCATGATCTACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGACAGTGCGGGGGCGAGTCACCGAAGCTGCACTC
Alignments
lowQualScore : 111111 11111111 111111 22222222 1 1 111111 11 11 4444444444444 1
lowQualScore : 5 4 4 4 4 111111 44444444 3 55 3 99999 3 3 5 666666 00000000 0 1 3 5 8 888888 99 99 1 5 5 5 5 5 11 8 99 4444444444444 3 0
lowQualScore : . . . . . ...... ........ . .. . ..... . . . ...... ........ . . . . . ...... .. .. . . . . . . .. . .. ............. . .
lowQualScore : 0 0 0 0 0 555555 55555555 6 00 6 11111 6 6 0 444444 77777777 6 3 7 0 0 333333 22 22 0 7 7 7 7 7 00 0 00 0000000000000 2 0
consensus : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATGAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
Reference ( family-1061 ) : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATGAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
gi|1 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGATGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATTTATCCTCCAGGACGCGAGTGTTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCG-TTGAAACAGCCCTAACACCGACAAATGAA-GCCTCA--A-TTCGAATTAGGT--CGATTCCTCGTTTTATT--ATTTTTTTTGCACA-T-TAT-G-TCAGCACA--TAAACACA-CAAAATTCTAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATAATTTATTA
gi|10 : acatgtgcgggggaagaataagagcggactccAGTATATCATGATCA------ATAT--------GATGCTATCGCCATTT-AAACAGTCCTAACACTGAAAAATGAA-GCCTCACAGTT-CGAATTAGGT--TGCCTCCTCG--CCATTCGA-TTGCTTTGCGCA-T-GAC-G-TCAGTA
gi|11 : TGAAAAGTGTGGAA-T-CAGCCGA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTAC-TTTTAC-AACTT-TATTTACCGGATCTCTTTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTC
gi|12 : TTGAAAAGTG-GGAA-TTCTGG-GA-CA-CC------AG--------CCGGTGTCGCTA-C--T-C-----TGTCTACCTTTTAC-AACTT-TACTTTGC--------------GGACGTGAGGATTAAGTCATCGTATGATTA-TTCT
gi|13 : GAA-TTCAGC-GA-CA-CC------AA--------CTGGTGTCGCTG-C--T-C-----TGCTTATCTTTTAC-AACTT-TATTTTGTGTATCTATCTTCCAGGATGCAATAATTCAGTTATCGGATGA
gi|14 : TGACAAGTG-G-AA-CT-AGC-GA--A-GC------AC--------TTG----CGCTG-T--T-T-----TGCCTACTTTTTAC-AAC---TATTAGACGGATCT
gi|15 : gtacggaaatagagcacgtccataTCGCTG-C--T-C-----TGCCTACCTTTTAC-AGCTT-TATGTCACGAATCTACCTCTCAGGACACGAGGATTCAGTTTTCGGATGATTA-TT
gi|16 : TTGATAATCT-GGA---TCACC-GAGCATCC------AG--------C-GGTGTCGCTG-CGCT-C-----TGCCTACC-TTTACAAACTTCTATTTCCTGGATCTA
gi|17 : ttcTCGGATAATTA-TTCTACAAATCAATCATGATTAATAGTTATAC--------GATGCTGTTGCTG-TGTAAAT-TCTCTAACATCAACAA
gi|18 : GGACGTGAGAATTCAGTTATCGGATAATTA-TTCTACAAATCAATCATGACTA------ATAC--------G
gi|2 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--TGC-----TGACTAACTTTTAC-AACTT-TATTTCCCGGATCTATCTTCCA-GACGCGAGGATTAAGTCTTCGGATGGTTATTTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCGTTTTAAACGACCCTAACACCGACAAAT-CA-GCCTCA--GTTTTGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCATT-GAC-GTTCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGGATTAGCATCG-------------TA-T-AATTATGATTTACTA
gi|20 : ATTTGA-TTTCTTTGCGCA-T-GAT-G-TCAGCAC
gi|3 : ATGTTGAAAAGTG-GGAAATTCAGC-GA-CA-CC------AGGCACCAGCCTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-CATTT-TATTTCGCAGA
gi|4 : tgacatgagtcggggaggaatcatagagcggactcc-TTCTGT-GA-CA-CC------AA--------GCGGCGTCGCTGGC--T-TAACATTGCCTACCTTTTAC-AACTT--ATTTTGTGGATCTACATCCTAAGATCCAAGGATCAGTTAATTG-ACAGCCA-TTCTACTCATAAATCATGACTA------ACAC--------AATGCTATaatacactgtttagatgtgattgaattcaaaacttctgggtttaaattatcttcaaattaatacaaatggtattacttta
gi|5 : gggggggcttcgagcagatgccattttaaatattagggttcgAAGTAAATCATAATTA------ATACATTTGTACGATGCTATCGCCGTTT-AAACGACCCTAACACCAACAAATCAA-GCCTCA--GTT-CGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTACAGTTTAAACGGCGA--TAGCATCG-------------tcc
gi|6 : TTAAACGGCC-TAA-ACCGATCCATGAAAGCCTCA--GTT-CGAATTAGGTGACGCTTTATCG--C-ATTCGA-TTTCTTTGCGCA-TTGACCG-TCAGCACA--TAAACACACCAAAATTCCAGTTCTAACGGCTAT-TAGCATCG-------------TATTAAATTATGATTTATT
gi|7 : TGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CCAGCACCAG--------CTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-AATTT-TATTTCGCAGAg
gi|8 : TTCGCGGATCTATCTTCCAAGACGCGAGGATCAAGTCGTCaatacctgtagatgtgatttgaattcaaaacttctgggtatttaaattacttcaaattaatacaaatggta
gi|9 : gacatgtgagggggagagtcagagcggactctacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCA---CTTCGAATTAGGT--CGCT-CTTCA--CCTTTCGA-TTTCTTTGCGCA-T-GAC-G-TCAATATATTTAAACACA-CAAAATTCCATGATAAATGATGA--TTGCATTGTACAATGTAATACTATT-AATCATGATCTACT
blockSeqs : T A C G T AGCACC GCACCAGC G GC G AACAT A C T ATAGTT ATTTGTAC T T A G A CAGTT GA . C . T T C T TT C AT TACAATGTAATAC T A
blockSeqs : . . . . . . . . . . . . . . . . T T G C . GTTT . . C . . . . . . . T . T .
blockSeqs : . . . . . . . . . . . . . . . . T T G G . GTT . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . G . . GTT . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . CTT . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : **
originalCons : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATGAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
finalCons : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATGAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGACAGTGCGGGGGCGAGTCACCGAAGCTGCACTC
Alignments
lowQualScore : 111111 11111111 111111 22222222 1 1 111111 11 11 4444444444444 1
lowQualScore : 5 4 4 4 4 111111 44444444 3 55 3 99999 3 3 5 666666 00000000 0 1 3 5 8 888888 99 99 1 5 5 5 5 5 11 8 99 4444444444444 3 0
lowQualScore : . . . . . ...... ........ . .. . ..... . . . ...... ........ . . . . . ...... .. .. . . . . . . .. . .. ............. . .
lowQualScore : 0 0 0 0 0 555555 55555555 6 00 6 11111 6 6 0 444444 77777777 6 3 7 0 0 333333 22 22 0 7 7 7 7 7 00 0 00 0000000000000 2 0
consensus : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATGAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
Reference ( family-1061 ) : ATGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATCTATCTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATGATTA------ATAC--------GATGCTATCGCCGTTTTAAACGGCCCTAACACCGACAAATGAA-GCCTCA--GTTTCGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATGATTTACTA
gi|1 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGATGTCGCTG-C--T-C-----TGCCTACCTTTTAC-AACTT-TATTTCGCGGATTTATCCTCCAGGACGCGAGTGTTAAGTCATCGGATGATTA-TTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCG-TTGAAACAGCCCTAACACCGACAAATGAA-GCCTCA--A-TTCGAATTAGGT--CGATTCCTCGTTTTATT--ATTTTTTTTGCACA-T-TAT-G-TCAGCACA--TAAACACA-CAAAATTCTAGTTTAAACGGCGA--TAGCATCG-------------TATT-AATTATAATTTATTA
gi|10 : acatgtgcgggggaagaataagagcggactccAGTATATCATGATCA------ATAT--------GATGCTATCGCCATTT-AAACAGTCCTAACACTGAAAAATGAA-GCCTCACAGTT-CGAATTAGGT--TGCCTCCTCG--CCATTCGA-TTGCTTTGCGCA-T-GAC-G-TCAGTA
gi|11 : TGAAAAGTGTGGAA-T-CAGCCGA-CA-CC------AG--------CTGGTGTCGCTG-C--T-C-----TGCCTAC-TTTTAC-AACTT-TATTTACCGGATCTCTTTTCCAGGACGCGAGGATTAAGTCATCGGATGATTA-TTC
gi|12 : TTGAAAAGTG-GGAA-TTCTGG-GA-CA-CC------AG--------CCGGTGTCGCTA-C--T-C-----TGTCTACCTTTTAC-AACTT-TACTTTGC--------------GGACGTGAGGATTAAGTCATCGTATGATTA-TTCT
gi|13 : GAA-TTCAGC-GA-CA-CC------AA--------CTGGTGTCGCTG-C--T-C-----TGCTTATCTTTTAC-AACTT-TATTTTGTGTATCTATCTTCCAGGATGCAATAATTCAGTTATCGGATGA
gi|14 : TGACAAGTG-G-AA-CT-AGC-GA--A-GC------AC--------TTG----CGCTG-T--T-T-----TGCCTACTTTTTAC-AAC---TATTAGACGGATCT
gi|15 : gtacggaaatagagcacgtccataTCGCTG-C--T-C-----TGCCTACCTTTTAC-AGCTT-TATGTCACGAATCTACCTCTCAGGACACGAGGATTCAGTTTTCGGATGATTA-TT
gi|16 : TTGATAATCT-GGA---TCACC-GAGCATCC------AG--------C-GGTGTCGCTG-CGCT-C-----TGCCTACC-TTTACAAACTTCTATTTCCTGGATCTA
gi|17 : ttcTCGGATAATTA-TTCTACAAATCAATCATGATTAATAGTTATAC--------GATGCTGTTGCTG-TGTAAAT-TCTCTAACATCAACAA
gi|18 : GGACGTGAGAATTCAGTTATCGGATAATTA-TTCTACAAATCAATCATGACTA------ATAC--------G
gi|2 : ATATTGAAAAGTG-GGAA-TTCAGC-GA-CA-CC------AG--------CTGGTGTCGCTG-C--TGC-----TGACTAACTTTTAC-AACTT-TATTTCCCGGATCTATCTTCCA-GACGCGAGGATTAAGTCTTCGGATGGTTATTTCTACAAGTAAATCATAATTA------ATAC--------GATGCTATCGCCGTTTTAAACGACCCTAACACCGACAAAT-CA-GCCTCA--GTTTTGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCATT-GAC-GTTCAGCACA--TAAACACA-CAAAATTCCAGTTTAAACGGCGGATTAGCATCG-------------TA-T-AATTATGATTTACTA
gi|20 : ATTTGA-TTTCTTTGCGCA-T-GAT-G-TCAGCAC
gi|3 : ATGTTGAAAAGTG-GGAAATTCAGC-GA-CA-CC------AGGCACCAGCCTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-CATTT-TATTTCGCAGA
gi|4 : tgacatgagtcggggaggaatcatagagcggactcc-TTCTGT-GA-CA-CC------AA--------GCGGCGTCGCTGGC--T-TAACATTGCCTACCTTTTAC-AACTT--ATTTTGTGGATCTACATCCTAAGATCCAAGGATCAGTTAATTG-ACAGCCA-TTCTACTCATAAATCATGACTA------ACAC--------AATGCTATaatacactgtttagatgtgattgaattcaaaacttctgggtttaaattatcttcaaattaatacaaatggtattacttta
gi|5 : gggggggcttcgagcagatgccattttaaatattagggttcgAAGTAAATCATAATTA------ATACATTTGTACGATGCTATCGCCGTTT-AAACGACCCTAACACCAACAAATCAA-GCCTCA--GTT-CGAATTAGGT--CGCTTCCTCG--CCATTCGA-TTTCTTTGCGCA-T-GAC-G-TCAGCACA--TAAACACA-CAAAATTACAGTTTAAACGGCGA--TAGCATCG-------------tcc
gi|6 : TTAAACGGCC-TAA-ACCGATCCATGAAAGCCTCA--GTT-CGAATTAGGTGACGCTTTATCG--C-ATTCGA-TTTCTTTGCGCA-TTGACCG-TCAGCACA--TAAACACACCAAAATTCCAGTTCTAACGGCTAT-TAGCATCG-------------TATTAAATTATGATTTATT
gi|7 : TGTTGAAAAGTG-GGAA-TTCAGC-GA-CA-CCAGCACCAG--------CTGGTGTCGCTG-C--T-C-----TGTCAACCTTTTAC-AATTT-TATTTCGCAGAg
gi|8 : TTCGCGGATCTATCTTCCAAGACGCGAGGATCAAGTCGTCaatacctgtagatgtgatttgaattcaaaacttctgggtatttaaattacttcaaattaatacaaatggta
gi|9 : gacatgtgagggggagagtcagagcggactctacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCA---CTTCGAATTAGGT--CGCT-CTTCA--CCTTTCGA-TTTCTTTGCGCA-T-GAC-G-TCAATATATTTAAACACA-CAAAATTCCATGATAAATGATGA--TTGCATTGTACAATGTAATACTATT-AATCATGATCTACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGACAGTGCGGGGGCGAGTCACCGAAGCTGCACTC