lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333 1 2222 11 11 1 0000000000000000000000000000000000000000000000000000000000000000 333333333333 333333 3333333333333333333333333333333333333333333 2 111111111 11 11 333333333333333333333 1 33333 222 3 333333333 22 44444 1111 22222 66666666666 3333333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222 22222222222222222 1111111111111111 11 111 111 111111 44444444 111111 11 22 111111 1111111 333333 2222 33 333 2 44444444444444444444 666666666666666666666666666 11111111 3333333333333333333 22 11 33333333333 22222 444 888888888888888888888888 33333 2222 2222222222 7777777777777777777777777777777777777777777777777777777777777777 11 666666666666 3
lowQualScore : 7777 6 1 6 1111 5 66 5 66 2 5 5 5555555555555555555555555555555555555555555555555555555555555555 8 888888888888 2 77 5 5 666666 5 5 66 4 4 4 4 1111111111111111111111111111111111111111111 4 2 88 0 777777777 4 00 4 00 4 555555555555555555555 4 4 3 4 4 4 4 3 5 88888 22 5 66 4 4 444 4 777 4 2 55 3 3 3 44 222222222 2 5 2 99 33333 4444 5 33 55555 2 3 99999999999 6 5555555555555555 3 3 77 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 1 6666 8888888 2 7 2 3 33 6666 33 33333333333333333 33 2 666 7777777777777777 2 2 2 55 000 000 0 0 3 6666 3 555 3 666666 3 3 99999999 8888 555555 11 88 66 1 5 7 8 5 5 444 222222 8888888 5 222222 6 99 6666 6 00 1 555 5 1 5 44444444444444444444 55 7 666 99 111111111111111111111111111 4 66666666 4 9999999999999999999 66666 0 44 77 88 11111111111 5 44444 222 6 333333333333333333333333 0 88 6 66666 2222 8 9999999999 5 0 9999999999999999999999999999999999999999999999999999999999999999 0 0 1 0 11 222222222222 0 3
lowQualScore : .... . . . .... . .. . .. . . . ................................................................ . ............ . .. . . ...... . . .. . . . . ........................................... . . .. . ......... . .. . .. . ..................... . . . . . . . . . ..... .. . .. . . ... . ... . . .. . . . .. ......... . . . .. ..... .... . .. ..... . . ........... . ................ . . .. . .............................................................................................................................................. .. . .... ....... . . . . .. .... .. ................. .. . ... ................ . . . .. ... ... . . . .... . ... . ...... . . ........ .... ...... .. .. .. . . . . . . ... ...... ....... . ...... . .. .... . .. . ... . . . .................... .. . ... .. ........................... . ........ . ................... ..... . .. .. .. ........... . ..... ... . ........................ . .. . ..... .... . .......... . . ................................................................ . . . . .. ............ . .
lowQualScore : 5555 7 7 6 4444 0 99 0 99 4 0 0 6666666666666666666666666666666666666666666666666666666666666666 8 666666666666 0 00 0 0 555555 0 0 11 4 4 4 4 7777777777777777777777777777777777777777777 4 4 00 6 888888888 4 66 4 44 4 888888888888888888888 1 4 3 4 4 4 4 9 0 44444 88 0 11 4 4 222 4 000 0 4 00 6 3 6 99 555555555 9 7 9 99 99999 7777 7 99 00000 9 1 22222222222 2 0000000000000000 3 3 99 3 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 99 5 1111 3333333 9 9 7 2 77 4444 99 11111111111111111 99 9 444 4444444444444444 9 7 7 99 777 000 4 5 1 4444 1 444 1 222222 3 3 99999999 5555 555555 33 33 11 9 0 6 8 0 0 333 000000 4444444 7 555555 7 22 2222 7 11 4 777 4 7 7 00000000000000000000 55 9 555 55 111111111111111111111111111 4 11111111 4 2222222222222222222 33333 8 55 99 88 99999999999 7 66666 555 7 888888888888888888888888 6 88 7 88888 2222 0 8888888888 6 8 6666666666666666666666666666666666666666666666666666666666666666 8 8 4 8 22 888888888888 8 2
consensus : AATCGCATGTG-TGA-TAGGGAAACTTTT--ATTA-C--GG-GG-CGTTTTGA-GGCGC-AT---------A-----------C----C-------------------AA-----------A----TCCCAAC---------AT-ATACG-AT-ATGCAT-ATTTA-TT---ATACATATTAAAC-AATTCTCTCAC--CC-CC-A-CA-TTGTTAA-G-TTTGCAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-CCTATAC---------CTA-T--AGAAA-TT-CATCT-CTTT---A-A-GATATTT-------ATCAAA-CACC-TTT-AT-AAA-TA-ATGA-CAT---TGTGCTC-C--AAA-TA-TACCGGT-CATT---TG-AATG-GAA--AAG-AAC-GT-ATTA-TATGTA------C--ATTTATT-A-CATTTT-CAACAGT--AAAATACT-GT-ATTTTA--TCCATT-GAATAA--AAA--TG-ATA-TTTTT-ACT------ATTTGAA-AATAAC----------------TA-GTGAAAA-TAACA--ACT-GAT---------T--------AC----TGA---TTG-T-C-A----T-T-T----T-TAT---GTT------TTGCAT-AGCTTT-TATA--T-C---------TT---GAGAT-------------CA-TCATGTTCTCCA---AAAACCAAAGAAAATGT----A-----ATA-AATAGAAA-AATTC--AATG---CTT--T-------T---------AG--TTGGA-TAT-C-GAATT-T-A-TT---------T-C-ACTTG-TGAGACNGGG---TTTTAA-AAATATT-TTCT---CTCGTG-CT---T-CG---AT-C-TCG-TGAAAA-TATTG--A----AAAAA------AAATCCTGT-CTCACTCGTG--AAANAA-TTCAAAAATCC-A-ACTACGTG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATA--GAG--G-ATTTTT-TTTTATAAAACTATCATGAAAT-TACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTGAA-ATTTA----AG-----G--CAATTTTAA--AGTAGCAA-A-TCCA--GTAT--ANA--TCTTACAA--TTAC-----CATGCGGGA-TAGA--------CTTCATAGTA-C-----------TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTANTTACTAT-----ACCCATG-CA-TTA-TGACA-TAGGGTAT-ACAAA-AC-------GTTA----------AATTTTCAC-AAAAA-GCAACAATTA--TCAATTA--AGCCA-ATTA-TATT-AA-TATCAACGTATATGA-------TAT-TTT-G-ACAT--TG-CATACTCAT-GTTACA----------------------CATGTATAATGATAAACAATCACTCGATTG-GTTGACTTGA--TGA-G--ACAAT-ATCGT
Reference ( gi|5 ) : AATCGCATTTG-TGA-TAGGGAAACTTTT--ATTA-C--GG-G--CGTTTTGA-GGTGC-AT---------A-----------C----T-------------------AA-----------A----TCCCAAC---------AC-ATACG-AT-ATGCAT-ATTTA-T----ATACATATTAAAC-AATTCTCTCAC--CC-CC-A-CA-TTGTTTA-G-TTTTTAAAGA-------TAC---------C--GGGGC-TA-TCAAAGATTT-CAGGCCTATAC---------CTA-T--AGAAA-TC-CATCT-CTTT---A-A-GATATTT-------ATTAAA-CACC-TTT-AT-AAA-TA-ATGA-CATT--TGTGCTC-C--AAA-TA-TACCAGT-CATT---TG-AATGCGAA--AAG-AAC-GT-ATTA-TATGTA------C-CATTTATT-A-CATTTT-CAACAGTT-AAAATACTTGTTATTTCA--TCCATT-GAATAA--AAA-TTG-ATA-TTTTT-ACT---T-TATTTGAA-AATAAC----------------TA-GTGAAAA-TAACA--ACT-GAT---------T--------AC----TG----TTG-T-C-A----T-T-T----T-TAT---GTT------TTGCCA-AGCCTT-TCTA--T-C---------TT---GAGAT-------------CA-TCATGTTTTCCA---AAAATCAAAGAAAATGT----A-----A-A-AATAGAAA-AATTC--AATG---CTT--T-------T---------AG--TTGGA-TAT-C-AAATT-C-A-TT---------T-C-ACTTA-TGAGACCAGG---TTTTAA-AAATATT-TTCT---CTCGTG-CT---T-CG---AT-C-TCG-TGAAAATTATTG--A----AAAAA------AAAACCTG--CTCACTCGTG--AAATAA-TTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TGAAT-ATA--GAG--G-ATTTTT-TTTTATAAAGTTATCATGAAATTTACAGAAGCTTTTGAC-AGTCCCTATTACTAAAGCTGAA-ATTTA----AG-----GC-CAATTTTAA--AGTAACAA-A-TCCA--GTAT--AT---TCTTACAAATTTAC-----CATGCGGGA-TAGA--------CTTCATAGTA-C-----------TTT-----TCAAT--AA-CGAAATATTTTCTAACGTTAAACTTT-TTTACTAT-----ACCCATG-CA-TAA-TGACATTTGGGTAT-ACAAA-A--------GTTT----------AATTTTCAC-AAAAA-GCAACAATTA--TCAATTA--AGCCA-ATTATTATT-AA-TATCAACGTATATGA-------TA--TTT-G-ACAT--TG-CATACTCAT-GTTACA----------------------CATGTATAATGATAAACAATCACTCGATTG-GTTGACT--A--TGA-GGTACAATCATCGT
gi|4 : AATCGCAGTTG---A-TAGGATCACTTTT---TTA-C--GG-GG-CGTTTTGA-GGTG-------------A-----------C----C-------------------AA-----------A----TCCCAAC---------ATTATACA-AT-ATGCAT-ATTTA-TT---ATACATATTAAAC-AATTATCTCAC--CC-CC-A-CA-TTGTTAA-GATTTGCAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATT--CAG-CCTATAC---------CTA-TT-AGAAAATT-CATCT-CTTTTTTA-A--ATATTTTATTTTTATCAAA-CACC-TTT-AT-AAA--A-ATGG-CAG----GTGCTC-C--AAA-TA-TGC-GGT-CATT---TG-CATG-GAA--AAG-AAC-GTTATTA-TATGTA------C--ATTTATT-AACATTTT-CAACAGT---AAATACT-GC-ACTTTA--TCCAT---ATTAA--AAA-TT--ATA-TTTTT-ACT---G-T---TGAA-AATAAC----------------TA-GTGAAAAATGACAC-ATT-GAT------------------AC----TGATGATTG-T-C-A----T-T-T----T--AT---GTT------TTGCAT-AGC-TT-TATA--T-C---------TTTT-GAGAT-------------CA-TCAT---TTCTA---AAATTCAAAGAAAATGT----A-----A-A-AATAG-AA-AATTC---ATG---CTT--T-------T---------TATTTTGAA-TAT-C-AAATT-T-A-TT---------T-CAACTTAGTGAG-CAAGGA--TTTTAA-AAATTAT-TTCT---CTCGTG-CT---T-CG---TT-CTTCGTTGAAAA-TA-TG--A----AAAAAC-----AAAACCTGT-CTCACTCGTGTAAAAAAA-TTC-AAAATCC-A-ACTACATGTT-ACAAAAGCATCGAA---GT-CTC-TATT-TATAT-ATA--GAG--ATATTTTT-TTTTTTATAATTATCATGAAA--TACAGAAGTTGTTGAC-AGTCCCTATTGCTAAAGCTG-A-ATTTA----AG-----G--CAATTTTAGCTAGCA--AA-A-TCCA--GTATCGA----TCTTACAA--TTA------CATGCGGGA-TAGA--------CTCCATAGTA-C-----------TTT-----T-AAT--A---------------AACGTT-AACTTT-ATTACT-T-----A-CCATGTCA-T-T-TGACA---GGGTAT-ATAAA-AC-------GTTA----------AATTTTCAC-AAAAA-GCAACAATT-----AATT---AGCCA-ATTA-TAT-----TATCAACGTATATGG-------T--------------------TAC-CAT-G-TACA----------------------CATGTATAATGATTAAC-ATCACTCGATTGCGTTGACT--GATTGA-G--AC-ATTATCGT
gi|1 : acgacatattttcattaaaaccaagtaagcgactatataaatcgctttgtagcgttagtttgataacaAATCGCAT--G-TGAATAGG-AAACTTT---ATTA-C--GG-GG-CGTTTTGA-GGCGC-AT---------AACCAATGCACCC----T-------------------AA-----------AAG--TCC-AAC----------C-ATATG-CTTATGTAT--TTTA-TT---ATACATATTAAACTAATTCTCTCAC--CC-C--A-TA-TT-TATA---TTTGCAAAGT-------T-C---------C--GGGGCCTA-TTAAAGATCTGCAG-CCCATAC---------CTAAT--AGAA--TT-CATCTGCTTT---A-----TA----------A--AAA-CACT-TTT-AT-AAAATA-ATTA-C-TT--TGT---T-C--AAA-TA-TAACGGTTCATT---AG-AATG-GAA--AAG-AAC-GC-ATAA-TATGTA------C--ATTTATT-A-CATTTT-CAATAGC--AAAA-ACTTATT--TTAA--TCCATT-GAATAA--AAA-ATG-AAT-TTTTT-ACT------AT--GAAGAATAAC----------------TAAGTAAAAA-TAACA--ACT-GAT---------TGTGAAGTTAC----TG----TTG-G-T-G----A-T-A----T-TAT---GTT------TTGCAT-AGCTTTATATACTT-T---------TT---GAGAC-------------CT-TCATGTTCT------AAAACCAAAGAAAATTT----A-----ATA-AATTAAAA-TAGTC--AATG---CTT--T-------TT--------AG--TTG-A-TAT-C-GAATT-TTA-TT---------T-C-ACTTA-TAAGATAGGA---CTTTTA-AAATATT-TTCT---TCCGTG-CT---T-CG---TA-C-TAG-TGAAAA-TA-TGAAA----AAAAA------AAAAACTGT-CTCACTCGTG--AATAAA-TTCAAAAATCC-ACACTACGTG-TGAC-AAAGCATTGAATCTGTCCTC-TA---TTTATAATA--AAG--G-ATTTTT-TATAATAA--CT-TCATGAA---TACAGAAG--TTTGACAAGTCCCTATTACTAAAGCTAAC-GTTTAAATTAA-----GA-CAATTTTAA--AGTAGCAA-A-TCCA--GTAT--AGA--ACTTACAA--TTA------CATGCGGGT-TAGA--------CTTCATAGTA-CA----------TGTACTAATCAAT---A-CAAAATATTTTCT-ACATT-AACTTTATTTACTAC-----A--TATG-CA-ATA-TGACA-TAGGGTAT-ACAAA-ACGATAAATGTTCACAAATGATAAATGTTCACAAAAAA-GCAACAATTAATTAAATT---AGCCACATTA-CATT-AA-TATCAATGTATATGA-------TATTTTT-G-ACAT--TG-TATACTCAT--TTACACATGTATAATGATAACAATCACCATGTATAATGATAAACAATCACTCAATTG-GTTGACTTGA--TGA-G--ACAAT-ATCGT
gi|3 : acatcattttcaattaaaaccaaaataatggacttgaaaaagtcgctttgtacgtcgtttttgacaacaAATCGCAT--GCTGA-TTAGGAAACTTTC---TTA-C--GG-GGGCGTTT-GA-GGCGC-AT---------A-----------C----C-------------------AATGCACCCTAAAA----TCCCAAC---------AA-ATGCA-AT-ATGTAT-ATTTA-TT---ATACATATTAAAC-AATTTTTTC-C--AC-CC-G-CA-T-ATT---G-TT-------A-------TAT---------T--G---------CAAAGTTAC-CGGGACTAT---------------T--AAAGA-TTTCAGCC-C-----------ATACCT-------AT-AGA--ACC----------A-TA-ATTA-C-----TGTGTTC-C--AAA-TA-TAC-GGT-CATT---TG-AATG-GAA--AAG-AAC-GC-ATTA-TATGTA------C--ATTTATT-A-CATTT--CAAAAGT--AAAATACT-GT-ATTT-A--TCCATT-GAATAA--AAA-T-G-ATA-TTTTT-ACG------ATTGAAA-AATAAC----------------TA-GTGAAAA-TA-CA--ACT-GATCGTGAAGGTT--------AC----TGA---TTG-T-G-A----T-A-T----T--AT---GTG------TTGCAT-AGCTTT-T-------------------------AT----------------TCATGTTCTAAATTTAAAATCAAAGAAAATGA----A-----T-A-AATA-AAA-AAGTC--AATG---CTT--T-------TT--------AG--TTGGA-ATT-C-GAATTAT-A-TT---------T-C-ACTTA-TAAGAT-AGG---ATTTTA-AAATATT-TCCA---TTCGTG-TT---TTCG---TA-C-TCG-TGAAAAT-ATGA--A----AANNN------NNNNNNNN--NNNNNNNNNN--NNNNNN-NNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNN-NN---NNNNN-ATA--AGA--G-ATTTTT-----ATATAACTATCATGAAAT--ACAGAAG-TTTTGAC-AGTCC-TATTACTAAAGCTAAACGTTTA----AAATTAAGA-CAATTTTAA--AGTAGCAA---TCCA--GTAT--AGA--TCTTGCAA--TTAC-----AATGCGGGT-TAGA--------CTTCATAGTA-CA----------TGTACTAATCAAT--AA-CAAAATATTTTCTAACATTA--CTTA-TTTACTAC-----AT--ATG-CA-ATA-TGACATA-GGGTAT-ACAAA-AC-------GATA----------AATGTTCAC-AAAAAAGCAACAATTAA-TTAATTA--C-CCA-ATTAC-ATC-AA-TATCAATGTATATGAATACATGTA--TTTTG-ACAT--TG-TATACTCAT--TTACA----------------------CATGTATAATGATAAACAATCACTCAATTA-GTTGACTTGA--TGA-G--ACAAT-ATCGT
gi|8 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaAATCGCATGT--TGA-T--GGAAACTTT---ATTA-CA-GG-G--CGTTTTGA-G-CGC-ATGACCAATGCA-----------CCCTAT-------------------AA-----------AGAGGTCCCAAC---------CA-ATATGCAT-ATGTAT-ATTTA-TT---ATACATAT-AAAC-AATTCTCTCAC--CC-CC-A-TA-TTGGTTATA-TTTGCAAAGT-------TAC---------C--GGG-C-TACTTAAAGATTT-CAGCTCCATAC---------CTA-T--AGAAA-TT-CATCT-CTTT---------T------------TTAAA-CACCTTTT-ATAAAA-TAGATTA-C-TT--TGTGTTC-C--AAATTA-TA-CGGT-CATT---TGAAATAGGAA--AAG--AC-GC-ATTA--ATGTA------A-CATTTATT-A-CATTTT-CAATAG-T-AAAATAC-TG-TATTTT---TTCATT-GAATAA--AAA-TT--ATA-TTTTT-AC------TA-TTGAACAATAAC----------------TA-GTGAAAA-T-ACATCACTGGATTGTGAAGG-T--------AC----TGA---TTG-TGA-A----A-T-A----T-TATG--GTT------TTGCAT-AGCTTT-AATA--T-CTT-------TT---GAGAc
gi|2 : gaacatattttcattaaaccaaataagcgaaagtcgctttgtacgtcattttgacaacATCGCATGT--TGA-TAGG-AAACTTTTTTATTAGC--GG-G--CGTTT-GA-GGTGC-ATG--------A-----------C----C-------------------AA-----------A----TCC-AAC---------AT-ATACA-AT-ATGCAT-ATTTA-CCTTCATACATATTAA-C-AATTATCTCACACCC-CC-AACAATTGTTAG-A-TTTGCAAAGA-------TACGTTAACTATCAAGGGGC-TA-TTCAATATTT-TCAGCTTATAC---------CTA-T--AGAAA-TT-CATCT-CTTT---A-AAGATATTT-------ATCAAAACACC-TTTTAT-AAA-TA-AT---CGTCAATGTGCTCGC--AAA-TA-TACGGGT-CATT---TG-AATG--AA--AAG-AAC-GT-ATTT-TATGTT------A-CATTTATTCA-CATTTTTCAACAGT--AAAATACT-GTATTTTTA--TC-ATT-GAATAA--AAAATTG-ATA-TTTT--ACT------ATT-GAA-AATAAC----------------TA-GTAAAAA-TGACG--AAT-GAT---------T--------AC----TGA---TTG-TTC-A----A-T-T----A-TAT---GTT------TTGCAT-AGC-TT-TATA--T-C---------TTTTCGAGAG-------------CAATCATGTT---CA---AAA--TAAAGAAA-TGT----A-----ATA-AAAAGAAA-A--TT--ACTG---CTT--T-------T---------AG--TTGGA-TAT-C-AAATT-T-AATT---------T-C-ACTTA-TGAGAC-AGGATTTTTTAA-ATATATTATTCT---CTCGTG-CT---T-CG---ATTC-TCG-TGATAAT-AT-G--A----ACAAA------AA---CTGTCCTCACTCGTA--AAATAAATTCAAAA-TCCGA-ACT-CTTG-T-AC-AAAGTATCAAT--TGTCCTCGTA---TTTAT-ATATGGAGA-G-TTTTTT-TTTTATAA--TTATCATGAAATAT-CAGAAGTTTT--AC-AGTCCCTATTACTAAAGCTGAA-ATTAA----AAT----GCGCAATTTTAA---GTAGCAA-T-CCCA--GTAT---TAGATCTTACA---TTAC------ATGCGGGAATAGA--------CTTCATAGTA-T-----------TTT-----TCAAT--TA-AGAAATATTTTCCAAC----ACCTTT-ATTACTA------ACCCATG-TA-TCA-TGACA-TAGGGTATCACAAA-AC-------GTTA----------AATTTTCAC--AAAA-GCAAC-ATTG----AATTATTAGCCA-ATTTATATT-GATTATC--CGTATATGA-------TAT-TTT-GCGCAT--TGCCATACTCAA-GT---A----------------------CATGTATAATGATTAACAATCA-TCGATT--GTTGACT-----TGATGGGACAAT-ATCGTc
gi|6 : gaacatctttcatttaaaaccaagtaagcaagacttgataaaatgtttgttacgtagttttgataacaacg-TGA-T-GGGAAACTTT---ATTA-C--GGAG--CGTT--GAAGGTGC-AT---------AT----------C----C-------------------AA-----------A----TCC-AAC---------AT-AT-CA-A--ATGCA--ATTTA-TT---ATACATAT-AAAC-AATTCTCTTAC--CC-AG-A-CA-TTGTTAA-T-TTGGCAAAGACACGTAATAC---------C--GGGGC-TA-TTCAAGATT--CAG--CTATAC---------CTA-T--AGAAA-TT-CATCT-CTTT---CTA-GAT-TTT-------ATCAA--CACT-TTT-AT-AAA-TA-ATGAACATG--TGT-----C--AAA-TA-TA--GGT-CATT----G-AATG-GAA--AAG-AAC-GT-ATTA-TATGTA------C--ATTTATT-A--ATTTT---ACAGT---AAATACT-GT-ATTTT---TCCATTTGAATAA--AA---TG-GTAATTTTT-ACT---G--ATTGAAA-AATAAC----------------TA-GT-AAAA-TGACA--AC--GAT---------T--------AT----GA----TTG-T-C-A----T-T-T----T--AT---GTT------TTGCCATAGATTT-TATT--T-G---------TT---GAGAT--------------A-TCATGTTT-------AAAACCAAG--AAATGT----A-----ATA-AATAGAAATAATTC--AATG---CTT--T-------TTT-------AG--TTGGAGTAT-C-AATTT-G----T---------T-C-ACGTA-TGAGAC-AGG---ATTTAA-AA-TATT-T-CTAGGCTCGTG-CT---T-CG---AT-C-TCG--GAACA--AATG--A----AAAAA------AA--CCTGT-CTCGCTCGTA--AAATAT-TTCAAAA-TCC-A-ACTACATG-T-CA-AAAGCATCGAA--TGTC-TC-TAAGTTATAT-ATG--GAG----ATTTTTATTTTATAA--TTCT-ATGAAAT--ACAGAAG-TTTTGAC-ATTCCCTATTACTAAAGCTGAA-ATT-A----AG-----GC--AATTTTAA--AGTAGCAA-AATCCA--GTATT-AA---TCTTACAA--TTAA------ATG-GGGA-TAGA--------CTTCATAGTT-A-----------TTT-----TCAAT--AA-CGAAATATTTTCTAACTTTA--------TTACTAGGGAGAGCAGATG-CA-TTA-TGACGATAAGGTAT-ACc
gi|9 : tcttttcattaaaccagtatgcgaacttgataatatgctttgtacgtaggtttggataacaaatgctgtGAAACTTTT--ATTA-CG-GG-G--CG--TTGA-GGTGCAAT---------A-----------C----C-------------------AA-----------A----TTCCAAC-------------TATA-AT-ATACAT-AT-------------AAATT--AC-AATTCTCTCAC--CCGCC-A-CA-TTGTTAG-A-TTTGCAAAGA-------TAC---------C--GAG-------TAAAGATTT-CA-GCCTATACCTATATATACTA-T--AGAAA-TT-CATCT-CTTT---A-A-GTAATTT-------ATTAAA-CACC-CTT-AT-AGA-TA-ATGA-CA----TGTGCTC-CAAAAA-TA-TACGCGT-ATTT---TG-ACTG-GAA--AAG-AAC-Gggtaacgggaacgtttcgacgatagacatt
gi|20 : cgaattttcattaaacaagtaagcgactgataaatcgctttgtacgtagctttgattgattgaataTTTT--ATTA-CAGGG-G--CGTTT-GA-GGTGC-AT---------A-----------CAA--TGCAGTGAATGCACCCTAAAAA-----------A----TCCCAACAATTCACGAAT-ATCCA-AT-ATGCGTGATTTATT----ATACATc
gi|7 : tacgtttttctgatgactcgca-AATTCTCTCAC--CC-CCCA-CA-TTGTTAG-G-TTTTCAAAGA-------TAC---------C--GGG-C-TA-TCAAAGATTT-CAG-CCTATAC---------CTA-T--AGAAA-TT-CATCT-CTTT---A-A-GATATTT-------ATTAAA-CACCTTTT-AT-AAA-TA-ATGA-CA----TGTGCTC-C--AAA-TA-TA-CGGT-CATT---TG-AATG-GAA--AAG-AAC-GT-ATTA-TATGTA--------CATTTATT-A-CATTTT-CAACAG-T-AAAATAC-TG-TATTTCT--TCCATT-GAATAA--AAA--TG-GTA-TTTTT----------------------AC----------------TA-GTGAAAA-TAACA--ACT-GAT---------T--------AC----TGA---TCG---C-A----T--------------------------------AGCTTT-TCTA--T-CTTT------TT---G-GAT-------------CA-TCATGTTCT------AAAATCAAA-AAAATGT----A-----ATA-AATAG-AA-AATGC--AATG---CTT--T-------T---------TG--TTGGA-TAT-C-AAATT-----TT---------T-C-ACTTA-TGAGACAGGA---TTTTAA-AAATATT-TTCT---CTCGTG-CT---T-CG---AT-C-TCG-TTAAA--TATTG--A----AANNN------NNNNNNNN--NNNNNNNNNN--NNNNNN-NNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NA------TA---TACAT-GTA--GAGATA-ATCTTT-TTTTATAA--TTATCATGAAA--TACAGAAG-TTTTGAC-AGTCCCTATTACTAAGGCTGAA-A-TTA----AG-----G--CAATTTTAA--AGTAACAA-A-TCCA--GTAT--ATA--TCTTACAA--TTA------CATGC
gi|21 : TCTCAC--CC-CC-A-CA-TTGTT-A-G-ATTTTCAA-------------------------------A-TTAAAGATTT-CAG-CCTATAC---------CTA-TGTAGAAA-TT-CATCT-CTTT---C-A-TACATTT-------ATTAAA-CACCTTTT-AT-AAA-TA-ATG
gi|14 : --AAA-TACTGCCAAT-TATCACGTA-AATATGAATTAAA-AATAGT-ACTA------A------C-AAT--ATT-AGTATTTT-CACTGGTTGAAAAGAC--------------CCAAA-AAATAACAAAA-GTGTAAA-TTTTTCACTAAGTGTAGTTGAA-AATATA----------------TA-GTGAAAA-TAACA--ACT-GAT---------TGTA-----AC-----G----TTA-T---A----T-T-T----TGTATATAGCT------TTGTC----CTTT-GATAT-T-T---------TT---AAGAT-------------CA-TCATG---TCCT---AAAAGCAAAGAAAATGT----A-----ATG-AATAGAAA-ATTTC--A
gi|11 : ---TG-AATG-GAA--AAG-AAC-GT-ATTA-TATGTA------C--ATGTATT-A-CATTTT-CAACAGT--GAAATACT-GT-ATTTTA--TCCATT-GAATAA--A----T--ATA-TTTTT-ACT------ATC-GAA-AATAAC----------------TA-GTGAAAG-TAACA--ACT-GAT---------TGTG-----ACATCATG----TTA-C-CGA----T-TGTGACAT-TAT---GTT------TTGCAT-AG-CTT-TATA--T-CTTTTGAGATTT---GAGAT-------------CA-CCATGTTCT------AAAACCATAGTAAATGT----A-----ATA-AATAG-AA-AATTC--AATGGGTTTT--T-------T---------AC--TTGGA-TAT-G-GAATT-T-A-TTTCACTTACGT-C-ACTTA-TGAGACCGGtg
gi|16 : TGAGAA--ACGCAAC-AT-ACTAACACGTAAATAAAC-TAATTATT-A-CATTTT-CAAGAGT--AAAATACTT--TATTTTA--TCCATT-GAATAA--AAA--TA-ACA-ATCTC-A-----T-TA-TTGAA-AATAAC----------------
gi|25 : aggg-GT-ACCA-TGTGTA------TGTTTTTATT-A-CATTTT-CAACC-TC-AAAATACT-GAAATT--A--TCCATT-GAATAA--AAA-TTT-ATA-TTTTaaatttcacaacaaattgtgacgtcacgctaaaatagaaaagttattgtttttagttgggtat
gi|13 : TTTATT-A-CATTTT-CAACAGT--GGAATACT-GT-ACTTTA--TCCATT-GA------------------TTTTC-ACT------AGT-GAA-AATAACAATATTCACTA-----TA-TTGAAAA-TAACA--CCC-GAT---------T--------G-----TG----ACG-T-C-A----TAT-TG---T-TAT---GTT------TTGTAT-AGC-----------------------T---G---------------------TACG---TCC------AACCAAAGAAAATGTNNNNN-----N-N-NNNNNNNN-NNNNN--NNNN---NNN--N-------N---------NN--NNNNN-NNN-N-NNNNN-N-N-NN---------N-N-NNNNN-NNNNNCTAGGA--TTGT---AAATATT-TTCA---CTCGTATTT---T-CG---CA-C-TCA-TGAAAATc
gi|10 : TTATT-A-CATTTT-CAACAGT-----------GT-ATTTTA--TCCATT-GAATAA--AAC-C-----A-TTTTC-AC-------GAGTGAA-AATAACAAAATGTTATTTTCACTA-GTGAAAA-TAACA--AGT-AAT---------TGTG-----ACGTCATG----TTGCT-C-AGTGAT-TGTAACGT-TAT---GTT------TTGTAT-AGCTTA-TACG--TCC---------TT---GAGATTGAAATACATGTACA-TCATG--TTCTA---AAA--CAAAGTAAATGT----A-----ATA-AACAG--A-AATGC--AATG----TTAAT-------T---------AG--TTGTA-TAT-G-GAATT-T-A-TT---------T-C-ACTTG-TGGGACAGAA---TTTTTA-AAATA-T-TTCA---CTCGTG-CT---T-at
gi|12 : TATT-A-CATTTT-CG-CAGT---GAATGCTGTTTATTTTAATTCCATTTGAATAA--AAAAGTG-ATA-TGTTT-ACT-------------------------------------A-GTGAAAA-TAAC-----T-GAT---------T--------------TG------A-T-C-G----T-T-T-------AT---GTTACAGTGTCGCTT-GGC-TT-TCT---T-CCT-------TT---GAGAT-------------CA-CCATGGTT---A---AAAG--AAAGAATATAT----ACTATGA-A-AATAACAC-AATTC--AATG---TTT--T-------T----------G--TT--A-TGG-T-AATGT-T-A-TT---------T-C-ACTTG-TGTGACAGAA---TTTTAATGAATATT-TTTT---CTGGTG-CTTTCT-TGCACAT-C--CG-TGAAA
gi|17 : TGTCTGTCT---AAAACCAAG--AAATAT----A-----ATATAATA--AA-AATTC--AATG----TT--T-------C---------AG--CTTGA-TATGT-AATTT-C-A--T---------T-C-AC-TG-TGAGA-CAGG---ATT-----AACA-----CT---C---------------------------TGAAAA--------A----AAAAA------AAATCCTG--TT---TCGAG--AAATAT-TCC---AATCC-A-Atat
gi|18 : catagatatcacactttttcggtagctacCAAAGAAAATGT----A-----ATG-AATAGAAA-A-TTCTAAAT----TTT--T-------T---------AG--TTGGA-TAT-G-GAATT-T-C-TT---------T-G-TATTG-TGAGAGAGAA---TTTTAA-AAATGTT-TT-T---CACA------------------C-TCA-TAAAAA-TAT----A----AAAAA------AAATCTTGT-CTCACTCGTG--AAATA
gi|4 : cATAT----A-----T-A-AATAGAGA-C-TTC--GATG---CTT--T-------TGTAACATGTAG--TTGGA-TTT-T-GAATT-T-T-TT---------TAC-ACGAG-TGAGA-CAGG---TTTT
gi|6 : acgacatattttcattaaaaccaagtaagcgactatataaatcgctttgtagcgttagtttgataacaaatcgcagttgataggatcacttttttacggggcgttttgaggtgaccaaatcccaacattatacaatatgcatatttattatacatattaaacaattatctcacccccacattgttaagatttgcaaagataccggggctattaaagattcagcctatacctattagaaaattcatctcttttttaaatattttatttttatcaaacacctttataaaaatggcaggtgctccaaatatgcggtcatttgcatggaaaagaacgttattatatgtacatttattaacattttcaacagtaaatactgcactttatccatattaaaaattatatttttactgttgaaaataactagtgaaaaatgacacattgatactgatgattgtcattttatgttttgcatagctttatatcttttgagatcatcatttctaaaattcaaagaaaatgtaaaaatagaaaattcatgctttttattttgaatatcaaatttatttcaacttagtgagcaaggattttaaaaattatttctctcgtgcttcgttcttcgttgaaaatatgaaaaaacTAGAGA-CATTC--GATG---CTT--TTGACATGT---------AG--TTGGA-TTT-TGAAAT----A-TT---------T-T-ACGAG-CGAGA-CAGG---TTTT--------TT-TTCA---TT--TG-TT---C-CG---AG-A-TCG-----AAGCA-CG--AGCCTAGAAATATTTTAAATCCTGT-CTCATACGTG--AACAAA-TT-GATACTCC-A-ACTA-------AA-AAAGCATTGAA--TTATTTC-TA---Tagagatatttttttttttataattatcatgaaatacagaagttgttgacagtccctattgctaaagctgaatttaaggcaattttagctagcaaaatccagtatcgatcttacaattacatgcgggatagactccatagtacttttaataaacgttaactttattacttaccatgtcatttgacagggtatataaaacgttaaattttcacaaaaagcaacaattaattagccaattatattatcaacgtatatggttaccatgtacacatgtataatgattaacatcactcgattgcgttgactgattgagacattatcgt
gi|26 : tcttttcattaaaccagtatgcgaacttgataatatgctttgtacgtaggtttggataacaaatgctgttgatgggaaactttattacggagcgttgaaggtgcatatccaaatccaacatatcaaatgcaatttattatacatataaacaattctcttacccagacattgttaatttggcaaagacacgtaataccggggctattcaagattcagctatacctatagaaattcatctctttctagattttatcaacacttttataaataatgaacatgtgtcaaatataggtcattgaatggaaaagaacgtattatatgtacatttattaattttacagtaaatactgtatttttccatttgaataaaatggtaatttttactgattgaaaaataactagtaaaatgacaacgattatgattgtcattttatgttttgccatagattttatttgttgagatatcatgtttaaaaccaagaaatgtaataa-ACTTG-TGAGACTGAA---TTTTTT-CA-TATT-TTCA---CCAATG-CT---T-CG---AT-T-TTG-TGAAAA-TAT----A----AAAAA------AAagttatatatggagatttttattttataattctatgaaatacagaagttttgacattccctattactaaagctgaaattaaggcaattttaaagtagcaaaatccagtattaatcttacaattaaatggggatagacttcatagttattttcaataacgaaatattttctaactttattactagggagagcagatgcattatgacgataaggtatacggtaacgggaacgtttcgacgatagacatt
gi|15 : AAACTATCATGAAAT--ACAGACGTTTTATA--AGTCCCTATTACTAACGCTAAA--------------------CG--TTTAA--AGTAGCAC-A-TCTA--GTAT--AGA--TTTTACAA--TTACATGTACATGCGGGA-TAGA--------CTTCATAGTA-C-----------TTA-----TGAAA--AA-CGAAATATTCAGTAACGTT-AACTTTATTTACTAT-------CCATG-CA-TTT-TGACA-TAGGGCAT-ACAAATC--------GTTA----------AATTTTCTC-A-------AACAATCAC-TCGATT
gi|22 : -CAATT---A--AGTAGCAA-A-TCCAATGTAG--AT---T-TTACAA--TTAC-------------A-TAAT--------TTTCATAGTA-C-----------TTA-----TCAAT--AA-TGAAATGTTTTCTAA-GTT-AACTTTATTTAC--T-----ACCCATggttgacttgatgagacaatatc
gi|19 : gTTAA--AGTAGTAAGA-TCCAT-GCAT--ATAGATCTT-CAA--TTA---------GCGGGA-TAGA--------CTTCACAGTAGC-----------TTT-----TCAATTGAACCGAAAT-TTTTCTAA-GTC-AACTTT-ATTAC--T-----ACCCATG-CATTAATTGACAT
gi|23 : A--AGAAGCAA-A-TCCA--GTAT--AGA--TCT--CATACTTAC------ATGCGGGG-TAGATTACACGACTTCAAAGTA-CAATTATTATACTTA-----TCAAT--AA-TGAAATATTTTCTAACa
gi|15 : AAAA-ACGA-AATAT--TCAGTAA--CGTTA-ACT-TTATTTAC-TATCCATGCAT---------------TTT-G-ACATAGGG-CATACAAATCGTTAAA----------------------T-TTTCT-----CAAACAATCACTCGATTG-GTTGACTTGA--TGA-G--ACAAT-ATC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): AATAACAACTGATTGTGACGTCATGTTACTAATTGTGACCTTACATTTTGTCATTGCTTTACGTCCTTTGAAATTTGAGATCATCATGATCTAAAACCAAA
Unaligned ( gi|27 ): ACGACATCTTTTCATTAAATCAATTAAGCGACTTGATAAAGTCGCTTTGT
Alignments
lowQualScore : 2 1111 7777777777777777777777777777777777777777 3333333333333333333 1 111 11111111 111111111 111111111 222222222222222 1 1111 11 1111111 222222222222222222222222 11 333333333333 11111111111 55555555555555555555555555555555555555555 333333333 33333333333333 111111111111111 5555555 11111 111111111 111111 22222 11 1 222 1111 222 1 2222222222222 3333333 11111111 3333333333333333333 1 2222222222 555555555555555555 333333 333 33333333333 111 1 77777777777777777777777 11 11
lowQualScore : 5 8 4 7777 4 4 1 4 4 0 4 8 8 2222222222222222222222222222222222222222 2 1111111111111111111 4 4 0 4 777 0 3 4 4 55 4 4 4 4 4 444 4 44444444 666666666 55 9 4 4 8 4 4 666666666 8 55 4 4 777 111111111111111 44 4 4 2 55 8 4 4 4 8888 4 66 4 88 4 4 4 3 3 3 3 3 3 3 0000000 33 5 2 44 2 66 2 6666 5 555555555555555555555555 2 33 00 666 2 2 333333333333 5 33333333333 3 3 2 66 6666 2 66666666666666666666666666666666666666666 0 2 000000000 3 2 888888 2 2 33 2 55 88888888888888 777 777777777777777 2222222 0 22 33 33 2 99 2 33 33333 44 44 44 0 3 555 3 3 3 3 222222222 2 2 77777 999 8 3 0 3 555 6 555 444444 3 3 3 00000 4 00 4 66 55 1 5 5 0 3 5 5 5 888 00 5 555 5 7777 5 5 1 88 333 1 6 5 5555555555555 6 3 88888 3 3 3 3 3 666 3 1 55 2222222 4 44444444 4 2222222222222222222 55 4 44 4 8 4444444444 5 777 777 5 5 555555555555555555 222222 111 8 8 8 3 8 0 11111111111 8 99 0 111 1 0 44444444444444444444444 11 11 8 11 8
lowQualScore : . . . .... . . . . . . . . . ........................................ . ................... . . . . ... . . . . .. . . . . . ... . ........ ......... .. . . . . . . ......... . .. . . ... ............... .. . . . .. . . . . .... . .. . .. . . . . . . . . . . ....... .. . . .. . .. . .... . ........................ . .. .. ... . . ............ . ........... . . . .. .... . ......................................... . . ......... . . ...... . . .. . .. .............. ... ............... ....... . .. .. .. . .. . .. ..... .. .. .. . . ... . . . . ......... . . ..... ... . . . . ... . ... ...... . . . ..... . .. . .. .. . . . . . . . . ... .. . ... . .... . . . .. ... . . . ............. . . ..... . . . . . ... . . .. ....... . ........ . ................... .. . .. . . .......... . ... ... . . .................. ...... ... . . . . . . ........... . .. . ... . . ....................... .. .. . .. .
lowQualScore : 7 7 5 0000 4 4 9 6 4 7 4 9 9 7777777777777777777777777777777777777777 9 7777777777777777777 4 1 0 4 888 8 2 4 0 55 0 0 0 0 0 111 0 22222222 000000000 55 1 0 0 0 0 0 000000000 0 55 0 0 000 666666666666666 66 0 0 0 55 0 0 0 4 7777 4 11 4 99 4 0 0 6 6 3 6 6 6 6 0000000 99 7 9 11 9 88 9 6666 7 777777777777777777777777 7 77 00 444 7 9 333333333333 7 66666666666 1 1 3 88 1111 9 11111111111111111111111111111111111111111 1 9 111111111 2 9 222222 9 9 99 6 55 77777777777777 999 777777777777777 6666666 9 44 99 99 9 44 9 99 88888 22 22 22 5 1 111 1 1 1 1 333333333 9 9 11111 000 2 1 5 1 444 2 444 222222 3 3 3 44444 0 22 4 11 44 9 0 0 9 6 7 7 7 777 66 7 777 7 6666 0 7 7 88 999 2 5 0 9999999999999 6 4 66666 2 6 6 6 6 444 6 0 00 3333333 0 55555555 0 6666666666666666666 55 0 44 4 3 8888888888 0 222 111 7 7 888888888888888888 555555 444 0 0 0 8 0 8 44444444444 0 44 8 666 2 8 00000000000000000000000 22 66 0 00 0
consensus : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C----C-----------------AA----------------ATCCCAA---------C---------AT-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CAC--CC-CC-A-CA-TTG-TTAGA-T-TTGCAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATAC-GGT-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--A-TTTT-A--TCCATT-GA------------------------AT-AA--AAA--T-G-ATA-TTTTT-ACT--A-------TTGAA-AATAAC-----------T-AGTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTG-T--CA--TT-TTAT-GTT------TTG-C-ATAG--CTTT-TATA--TC---------TT---GAGAT-------------C-ATCATGTTCT--A---AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATT---------TC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTT-TTTTATAN-AACTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATAGA--------CTTCATAGTA-C-----------TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
Reference ( family-1056 ) : AATCGCATGTGTGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C----C-----------------AA----------------ATCCCAA---------C---------AT-ATACGATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CAC--CC-CC-A-CA-TTG-TTAAG-T-TTGCAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATACCGGT-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--A-TTTT-A--TCCATT-GA------------------------AT-AA--AAA--T-G-ATA-TTTTT-ACT--A----T--TTGAA-AATAAC-----------T-AGTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTG-T--CAT-TT-TTAT-GTT------TTG-C-ATAG--CTTT-TATA--TC---------TT---GAGAT-------------C-ATCATGTTCTCCA---AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATT---------TC-ACTT-GTGAGAC----NGGG--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAATCCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACGTG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTT-TTTTATAA-AACTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TANATCTTACAA--TTAC-----CATGCGGG-ATAGA--------CTTCATAGTA-C-----------TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTANTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATAAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|1 : AATCGCATGTG-AATAGG-AAACTTT---ATTAC-GGGG-CGTTTTGA-GGCGC-AT-AAC----C-----------------AATGC-------------ACCCTAAAAGTCCAACC---------AT-ATGCT-TATGTAT--TTTA---TTATACATATTAAACTAATTCTCT-CAC--CC-C--A-TA-TT---TATA-T-TTGCAAAGT-------T-C---------C--GGGGCCTA-TTAAAGATCTGCAG-C-CCATAC---------CTAAT--AG-AA-TTCATCTGC---TTTA-----TA----------A--AAA-CACT-TTT-ATAA--AATA-AT-TA-CTTT-GT---T-C--AAAT-ATAACGGTTCATTAGAA-T-G-GAAAAG-AACG-CATAA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAATAGC-AAAA-ACT--T--A-TTTTAA--TCCATT-GA------------------------ATAAA--AAA--T-G-AAT-TTTTT-ACT--A--------TGAAGAATAAC-----------TAAGTA-AAAATAACA--AC----T-GATTGTGAAG-----T--------T-------------AC---TGTTGG-T--GA--TA-TTAT-GTT------TTG-C-ATAG--CTTTATATACTTT---------TT---GAGAC-------------C-TTCATGTTCT------AAAACCAAAGAAAATTTA--AT--A-AATTAAAA-TAGTC--AATG---CTTT--TT--AG--TT-GA-TATCG-AATT-T-T-ATT---------TC-ACTT-ATAAGAT----AGGA--CTTTTA-AAATATT-TTCT---TCCGTG-CT---TCG---T-AC-TAG-TGAAAA-TA-TGAAAAAAAA-AAAAACTGT-CTCACTCGTG--AAT-AAATTCAAAAATCC-ACACTACGTG-TGAC-AAAGCATTGAATCTGTCCTC-TA---TTTATAATAAAG--G-A---TT-TTTTATAATAACT-TCATGAA---TACAGAAG--TTTGACAAGTCCCTATTACTAAAGCTA-------ACGTTTAAATTAAG---A-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGAACTTACAA--TTA------CATGCGGG-TTAGA--------CTTCATAGTA-CA----------TGTACTAATCAAT---A-CAAAATATTTTCT-ACATT-AACTTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACAAATGATAAATGTTCACAAAAAAGCAACAATT-AATTAAATT---AGCCACA-TTA-CATTAA-TATCAATGTATATGA-------TATTTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGAT-AACAATCACCATGTATAATGATAAACAATCACTCAATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|10 : acatcattttcaattaaaaccaaaataatggacttgaaaaagtcgctttgtacgtcgtttttgacaaca-------TT--ATT-ACATTTT-CAACAGT----------GT--A-TTTT-A--TCCATT-GAATAAAACCATTTTCACGAGTGAAAAT-AACAAAA--T-G-TTA-TTTTC-ACT--A----G--T-GAA-AATAAC-----------A-AGTA-ATTGTGACG--TCATGTT-GC-------------T--------C-------------AG---TGATTG-T--AAC-GT-T-AT-GTT------TTG-T-ATAG--CTTA-TACG--TCC--------TT---GAGATTGAAATACATGTAC-ATCATGTTCT------AAAAC-AAAGTAAATGTA--AT--A-AACAGAAA---TGC--AATG-----TTAATT--AG--TTGTA-TATGG-AA-T-T-T-ATT---------TC-ACTT-GTGGGAC----AGAA--TTTTTA-AAATA-T-TTCA---CTCGTG-CT---T
gi|11 : TGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------GT--ATT-ACATTTT-CAACAGT-GAAATACT-GT--A-TTTT-A--TCCATT-GA------------------------AT-----AAA--T---ATA-TTTTT-ACT--A-------TCGAA-AATAAC-----------T-AGTG-AAAGTAACA--AC----T-GATTGTGACATCATGT--------T-------------AC---CGATTG-TGACA-----TTAT-GTT------TTG-C-ATAG--C-TT-TATA--TCTTTTGAGATTT---GAGAT-------------C-ACCATGTTCT------AAAACCATAGTAAATGTA--AT--A-AATAG-AA-AATTC--AATGGGTT-TT--TT--AC--TTGGA-TATGG-AA-T-T-T-ATTTCACTTACGTC-ACTT-ATGAGAC----CGG
gi|12 : T--ATT-ACATTTT-CG-CAGT-GAA-TGCT-GTTTA-TTTT-AATTCCATTTGA------------------------AT-AA--AAAAGT-G-ATA-TGTTT-ACT--A---------------------------------GTG-AAAATAAC---------T-GA-------------T--------T------------------TGATCG-T---------TTAT-GTTACAGTGTCG-C-TTGG--CTTT-CTTC--CT---------TT---GAGAT-------------C-ACCATGGTT---A---AAAG--AAAGAATATATACTATGAA-AATAACAC-AATTC--AATG---T-TT--TT---G--TT-----ATGGTAA-TGT-T-ATT---------TC-ACTT-GTGTGAC----AGAA--TTTTAATGAATATT-TTTT---CTGGTG-CTTTCTTGCACA-TC--CG-TG-AAA-TAT
gi|13 : T-------TT--ATT-ACATTTT-CAACAGT-GGAATACT-GT--A-CTTT-A--TCCATT-G-------------------------------------------A-TTTTC-ACT--A-------GTGAA-AATAACAATATTCACTAT-ATTG-AAAATAACA--CC----C-GA-------------T--------T-------------G----TGA-CG-T--CATATTGTTAT-GTT------TTG-T-ATAG--CTGT----------------------------------------------ACGTCC---------AACCAAAGAAAATGTN--NN--N-NNNNNNNN-NNNNN--NNNN---N-NN--NN--NN--NNNNN-NNNNN-NN-N-N-N-NNN---------NN-NNNN-NNNNNNNNNCTAGGA--TTGT---AAATATT-TTCA---CTCGTATTT---TCG---C-AC-TCA-TGAAAA-TAT
gi|14 : A------------------------AC-AA--AAG--T-GTAAA-TTTTTCACT--AAGTGTAGTTGAA-AATATA-----------T-AGTG-AAAATAACA--AC----T-GA-------------T--------T-------------G----TAAC-G-T--TATATT-TTGT-ATA------TAG-C-TTTGTCCTTT-GATA--TT---------TTT--AAGAT-------------C-ATCATGTCCT------AAAAGCAAAGAAAATGTA--AT--G-AATAGAAA-ATTTC--A
gi|15 : aaatactgccaattatcacgtaaatatgaattaaaaatagtactaacaatattagtattttcactggttgaaaagacccaaaaaatA-AACTATCATGAAA-T-ACAGACGTTTTATA--AGTCCCTATTACTAACGCTA-------A-----A------------CG--TTTAAAG-TAGC-AC-A-TCTA---GTA-TAGATTTTACAA--TTACATGTACATGCGGG-ATAGA--------CTTCATAGTA-C-----------TTA-----TGAAA--AA-CGAAATATTCAGTAACGTT-AACTTTATTTACTAT-------CCATG-CATTT--TGAC-A-TAGGGCAT-ACAA-ATCGTTAAATTTTCTC------------------A------AACAATC-AC-TCGATTtg
gi|16 : -GAAACGCAACA-TACTAACACGT-A-A-ATAAACTAATT--ATT-ACATTTT-CAAGAGT-AAAATACT-TT--A-TTTT-A--TCCATT-GA------------------------AT-AA--AAA--T-A-ACA-ATCTC-ATT--A-------TTGAA-AATAAC-----------ggttgacttgatgagacaatatc
gi|17 : agggtga---AAAACCAAG--AAATATA--AT--ATAATA--AA-AATTC--AATG-----TT--TC--AG--CTTGA-TATGT-AA-T-T-T-CAT---------TC-AC-T-GTGAGAC----AGGA--TT------AACA-----CT---C--------------------------TGAAAA--------AAAAAA-AAATCCTGT-----TTCGAG--AAA-TATTCC---AATCC-A-Aaaatttcacaacaaattgtgacgtcacgctaaaatagaaaagttattgtttttagttgggtat
gi|18 : catagatatcacactttttcggtagctactgtctgtctCCAAAGAAAATGTA--AT--G-AATAG-AA-AATTCTAAAT----T-TT--TT--AG--TTGGA-TATGG-AA-T-T-T-CTT---------TG-TATT-GTGAGAG----AGAA--TTTTAA-AAATGTT-TT-T---CACA-----------------C-TCA-TAAAAA-TAT----AAAAAA-AAATCTTGT-CTCACTCGTG--AAA-TA
gi|19 : TTAAAG-TAGT-AAGA-TCCATGCATA-TAGATCTT-CAA--TTA---------GCGGG-ATAGA--------CTTCACAGTAGC-----------TTT-----TCAATTGAACCGAAAT-TTTTCTAA-GTC-AACTTTA-TTAC--T-----ACCCATG-CATTAATTGAC-A-TA
gi|2 : ATCGCATGT-TGATAGG-AAACTTTTTTATTAG-CGGG-CGTTT-GA-GGTGC-ATGA-C----C-----------------AA----------------ATCC-AA---------C---------AT-ATACAATATGCAT-ATTTACCTTCATACATATTAA-C-AATTATCT-CACACCC-CC-AACAATTG-TTAGA-T-TTGCAAAGA-------TACGTTAACTATCAAGGGGC-TA-TTCAATATTTTCAG-C-TTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-AAGATA-------TTTATCAAAACACC-TTTTATAA--A-TA-ATCGT-CAAT-GTGCTCGC--AAAT-ATACGGGT-CATTTGAA-T-G--AAAAG-AACG-TATTT-TATGTTA-C-AT-------TT--ATTCACATTTTTCAACAGT-AAAATACT-GT--ATTTTT-A--T-CATT-GA------------------------AT-AA--AAAATT-G-ATA--TTTT-ACT--A-------TTGAA-AATAAC-----------T-AGTA-AAAATGACG--AA----T-GA-------------T--------T-------------AC---TGATTGTT--CAA-TT-ATAT-GTT------TTG-C-ATAG--C-TT-TATA--TC---------TTTTCGAGAG-------------CAATCATGTT---CA---AAA--TAAAG-AAATGTA--AT--A-AAAAGAAA-A--TT--ACTG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-TAATT---------TC-ACTT-ATGAGAC----AGGATTTTTTAA-ATATATTATTCT---CTCGTG-CT---TCG---ATTC-TCG-TGATAA-TA-TG--AACAAA-AA---CTGTCCTCACTCGTA--AAATAAATTC-AAAATCCGA-ACT-CTTG-T-AC-AAAGTATCAAT--TGTCCTCGTATT-TATAT-ATGGAG--A-GTTTTT-TTTT-TAT-AATTATCATGAAA-TATCAGAAGTTTT--AC-AGTCCCTATTACTAAAGCTG-------A-----AATTAAAATGCG-CAATTTT-AAG-TAGC-AA-T-CCCA---GTATTAGATCTTAC-A--TTA------CATGCGGGAATAGA--------CTTCATAGTA-T-----------TTT-----TCAAT--TA-AGAAATATTTTCCAAC----ACCTTTA-TTACTA------ACCCATG-TATCA--TGAC-A-TAGGGTATCACAA-AACGTTAAATTTTCAC-------------------AAAAGCAAC-ATT-G----AATTATTAGCCA-ATTTA-TATTGATTATC--CGTATATGA-------TA-TTTTGCGCATTGCCATACTCAAGT---ACATGTATAATGATTAACAATCA------------------------TCGATT--GTTGACTTGA-TGGG--ACAAT-ATCGT
gi|20 : gaacatctttcatttaaaaccaagtaagcaagacttgataaaatgtttgttacgtagttttgataacaacgTTTT--ATTACAGGGG-CG-TTTGA-GGTGC-AT-A-CAATGCAGTGAATGCACCCTAAAAA----------------ATCCCAA---------CAATTCACGAAT-ATCCAATATGCGTGATTTA---TTATACATc
gi|21 : tacgtttttctgatgactcgcaTCT-CAC--CC-CC-A-CA-TTG-TTAGA-T-TTTCAAA---------------------------------TTAAAGATTT-CAG-C-CTATAC---------CTA-TGTAG-AAATTCATCT-C---TTTC-A-TACA-------TTTATTAAA-CACCTTTT-ATAA--A-TA-AT-G
gi|22 : ---G-CAATT---AAG-TAGC-AA-A-TCCA---ATG-TAGATTTTACAA--TTAC--------------ATAAT--------TTTCATAGTA-C-----------TTA-----TCAAT--AA-TGAAATGTTTTCTAA-GTT-AACTTTATTTAC--T-----ACCCAT
gi|23 : AAG-AAGC-AA-A-TCCA---GTA-TAGATCTCATAC--TTAC------ATGCGGG-GTAGATTACACGACTTCAAAGTA-CAATTATTATACTTA-----TCAAT--AA-TGAAATATTTTCTAAC
gi|24 : AATAACA--AC----T-GA-------------T--------TGTGACGTCATGTTAC---TAATTG-T--GAC-CT-T-AC-ATT------TTGTC-ATTG--CTTT--ACG--TCCTTTGAAATTT---GAGAT-------------C-ATCATGATCT------AAAACCAAA
gi|25 : G-TACCA-TGTGT-A-T-GT-------TTTTATT-ACATTTT-CAACCTC-AAAATACT-G---A-AATT-A--TCCATT-GA------------------------AT-AA--AAAT-T-T-ATA-TTTT
gi|26 : -ACTT-GTGAGAC----TGAA--TTTTTT-CA-TATT-TTCA---CCAATG-CT---TCG---A-TT-TTG-TGAAAA-TAT----AAAAAA-AAc
gi|3 : AATCGCATGC-TGATTAGGAAACTTTC---TTAC-GGGGGCGTTT-GA-GGCGC-AT-A-C----C-----------------AATGCACCCTAAA-----ATCCCAA---------C---------AA-ATGCAATATGTAT-ATTTA---TTATACATATTAAAC-AATTTTTTCCAC--CC-GC-A-TA-TTG-TTA---TATTGCAAAGT-------TAC---------C--GGGAC-TA-TTAAAGATTT-CAG-C-CCATAC---------CTA-T--AG-AA
gi|3 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaCT-A---TTAA-A-GAT--------TTCAGCCCA-TACC-TAT-AGAACCA-TA-AT-TA-C--T-GTGTTC-C--AAAT-ATAC-GGT-CATTTGAA-T-G-GAAAAG-AACG-CATTA-TATGT-A-C-AT-------TT--ATT-ACATTT--CAAAAGT-AAAATACT-GT--A-TTT--A--TCCATT-GA------------------------AT-AA--AAA--T-G-ATA-TTTTT-ACG--A----T--TGAAA-AATAAC-----------T-AGTG-AAAAT-ACA--AC----T-GATCGTGAAGG----T--------T-------------AC---TGATTG-T--GA--TA-TTAT-GTG------TTG-C-ATAG--CTTT-TAT----------------------------------------TCATGTTCTAAATTTAAAATCAAAGAAAATG-A--AT--A-AATA-AAA-AAGTC--AATG---CTTT--TT--AG--TTGGA-ATTCG-AA-T-TAT-ATT---------TC-ACTT-ATAAGAT----AGGA--TTTT-A-AAATATT-TCCA---TTCGTGTTT---TCG---T-AC-TCG-TGAAAA-TA-TG--AAAANN-NNNNNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNN-NN---NNNNN-ATAAGA--G-A----T-TTTTATAT-AACTATCATGAAA--TACAGAAG-TTTTGAC-AGT-CCTATTACTAAAGCTAAACGTTTA-----AAATTAAG---A-CAATTTTAAAG-TAGC--A-A-TCCA---GTA-TAGATCTTGCAA--TTAC-----AATGCGGG-TTAGA--------CTTCATAGTA-CA----------TGTACTAATCAAT--AA-CAAAATATTTTCTAACATT-A--CTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACA-----------------AAAAAGCAACAATTAA--TTAATT---ACCCA-A-TTA-CATCAA-TATCAATGTATATGAATACATGTA-TTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGATAAACAATCA-----------------------CTCAATTA-GTTGACTTGA-TGAG--ACAAT-ATCGTccataattactgtgttccaaatatacggtcatttgaatggaaaagaacgcattatatgtacatttattacatttcaaaagtaaaatactgtatttatccattgaataaaaatgatatttttacgattgaaaaataactagtgaaaatacaactgatcgtgaaggttactgattgtgatattatgtgttgcatagcttttattcatgttctaaatttaaaatcaaagaaaatgaataaataaaaaagtcaatgctttttagttggaattcgaattatatttcacttataagataggattttaaaatatttccattcgtgttttcgtactcgtgaaaatatgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagatttttatataactatcatgaaatacagaagttttgacagtcctattactaaagctaaacgtttaaaattaagacaattttaaagtagcaatccagtatagatcttgcaattacaatgcgggttagacttcatagtacatgtactaatcaataacaaaatattttctaacattacttatttactacatatgcaatatgacatagggtatacaaaacgataaatgttcacaaaaaagcaacaattaattaattacccaattacatcaatatcaatgtatatgaatacatgtattttgacattgtatactcatttacacatgtataatgataaacaatcactcaattagttgacttgatgagacaatatcgtc
gi|4 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaaatcgcatgctgattaggaaactttcttacgggggcgtttgaggcgcataccaatgcaccctaaaatcccaacaaatgcaatatgtatatttattatacatattaaacaattttttccacccgcatattgttatattgcaaagttaccgggaAATCGCA-GT-TGATAGGATCACTTTT---TTAC-GGGG-CGTTTTGA-GGTG-----A-C----C-----------------AA----------------ATCCCAA---------C---------ATTATACAATATGCAT-ATTTA---TTATACATATTAAAC-AATTATCT-CAC--CC-CC-A-CA-TTG-TTAAGAT-TTGCAAAGA-------TAC---------C--GGGGC-TA-TTAAAGA-TT-CAG-C-CTATAC---------CTATT--AGAAAATTCATCT-CTTTTTTA-A--ATATTTTATTTTTATCAAA-CACC-TTT-ATAA--A--A-AT-GG-CA-G-GTGCTC-C--AAAT-ATG-CGGT-CATTTGCA-T-G-GAAAAG-AACGTTATTA-TATGT-A-C-AT-------TT--ATTAACATTTT-CAACAGT--AAATACT-GC--A-CTTT-A--TCCAT---A------------------------TT-AA--AAA--T-T-ATA-TTTTT-ACT--G-------TTGAA-AATAAC-----------T-AGTGAAAAATGACAC-AT----T-GA----------------------T-------------ACTGATGATTG-T--CA--TT-TTAT-GTT------TTG-C-ATAG--C-TT-TATA--TCTT-------TT---GAGAT-------------C-ATCAT-TTCT--A---AAATTCAAAGAAAATGTA--A---A-AATAG-AA-AATTC---ATG---C-TT--TT--TATTTTGAA-TATCA-AA-T-T-T-ATT---------TCAACTTAGTGAGCA----AGGA--TTTTAA-AAATTAT-TTCT---CTCGTG-CT---TCG---T-TCTTCGTTGAAAA-TA-TG--AAAAAACAAAACCTGT-CTCACTCGTGTAAAA-AAATTC-AAAATCC-A-ACTACATGTT-ACAAAAGCATCGAA---GT-CTC-TATT-TATAT-ATAGAG--ATATTTTT-TTTTTTAT-AATTATCATGAAA--TACAGAAGTTGTTGAC-AGTCCCTATTGCTAAAGCTG-------------AATTTAAG---G-CAATTTT--AGCTAGCAAA-A-TCCA---GTA-TCGATCTTACAA--TTA------CATGCGGG-ATAGA--------CTCCATAGTA-C-----------TTT-----T-AAT--A---------------AACGTT-AACTTTA-TTACT-T-----A-CCATGTCATT---TGAC----AGGGTAT-ATAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT------AATT---AGCCA-A-TTA-TAT----TATCAACGTATATGG-------T-----------------TAC-CATG-TACACATGTATAATGATTAAC-ATCA-----------------------CTCGATTGCGTTGAC-TGATTGAG--ACATT-ATCGTc
gi|5 : acgacatattttcattaaaaccaagtaagcgactatataaatcgctttgtagcgttagtttgataacaAATCGCATTTGTGATAGGGAAACTTTT--ATTAC-GGG--CGTTTTGA-GGTGC-AT-A-C----T-----------------AA----------------ATCCCAA---------C---------AC-ATACGATATGCAT-ATTTA---T-ATACATATTAAAC-AATTCTCT-CAC--CC-CC-A-CA-TTG-TTTAG-T-TTTTAAAGA-------TAC---------C--GGGGC-TA-TCAAAGATTT-CAGGC-CTATAC---------CTA-T--AG-AAATCCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATTTGTGCTC-C--AAAT-ATACCAGT-CATTTGAA-T-GCGAAAAG-AACG-TATTA-TATGT-A-CCAT-------TT--ATT-ACATTTT-CAACAGTTAAAATACTTGTT-A-TTTC-A--TCCATT-GA------------------------AT-AA--AAA--TTG-ATA-TTTTT-ACTTTA----T--TTGAA-AATAAC-----------T-AGTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TG-TTG-T--CAT-TT-TTAT-GTT------TTG-C-CAAG--CCTT-TCTA--TC---------TT---GAGAT-------------C-ATCATGTTTTCCA---AAAATCAAAGAAAATGTA--A---A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-C-ATT---------TC-ACTT-ATGAGAC----CAGG--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAATTATTG--AAAAAA-AAAACCTG--CTCACTCGTG--AAA-TAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TGAAT-ATAGAG--G-ATTTTT-TTTTATAA-AGTTATCATGAAATTTACAGAAGCTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---GCCAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TAT-TCTTACAAATTTAC-----CATGCGGG-ATAGA--------CTTCATAGTA-C-----------TTT-----TCAAT--AA-CGAAATATTTTCTAACGTTAAACTTT-TTTACTAT-----ACCCATG-CATAA--TGAC-ATTTGGGTAT-ACAA-AA-GTTTAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTATTATTAA-TATCAACGTATATGA-------TA--TTTG-ACATTG-CATACTCATGTTACACATGTATAATGATAAACAATCA-----------------------CTCGATTG-GTTGACT--A-TGAGGTACAATCATCGT
gi|6 : TGT-TGAT-GGGAAACTTT---ATTAC-GGAG-CGTT--GAAGGTGC-AT-ATC----C-----------------AA----------------ATCC-AA---------C---------AT-AT-CAA-ATGCA--ATTTA---TTATACATAT-AAAC-AATTCTCT-TAC--CC-AG-A-CA-TTG-TTAAT-T-TGGCAAAGACACGTAATAC---------C--GGGGC-TA-TTCAAGATT--CAG-C--TATAC---------CTA-T--AG-AAATTCATCT-C---TTTCTA-GAT--------TTTATCAA--CACT-TTT-ATAA--A-TA-AT-GAACAT--GTGT---C--AAAT-ATA--GGT-CATT-GAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-A-ATTTT---ACAGT-AAA-TACT-GT--A-TTTT----TCCATTTGA------------------------AT-AA--AA---T-G-GTAATTTTT-ACTG-A----T--TGAAA-AATAAC-----------T-AGT--AAAATGACA--AC------GA-------------T--------T-------------A----TGATTG-T--CAT-TT-T-AT-GTT------TTG-CCATAG--ATTT-TATT--TG---------TT---GAGAT---------------ATCATGTTT-------AAAACCAAG--AAATGTA--AT--A-AATAGAAATAATTC--AATG---C-TT--TTTTAG--TTGGAGTATC--AA-T-T-T-GTT----------C-ACGT-ATGAGAC----AGGA--TTT--A-AAATATT-T-CTAGGCTCGTG-CT---TCG---A-TC-TCG--GAACA-AAT-G--AAAAAA-AA--CCTGT-CTCGCTCGTA--AAA-TATTTCAAAA-TCC-A-ACTACATG-T-CA-AAAGCATCGAA--TGTC-TC-TAAGTTATAT-ATGGAG----ATTTTTATTTTATAA-TTCTAT---GAAA-T-ACAGAAGTTTT-GAC-ATTCCCTATTACTAAAGCTG-------A-----AATT-AAG---G-CAATTTTAAAG-TAGC-AA-AATCCA---GTA-TTAATCTTACAA--TTAA------ATG-GGG-ATAGA--------CTTCATAGTT-A-----------TTT-----TCAAT--AA-CGAAATATTTTC------T-AACTTTA-TTACTAGGGAGAGCAGATG-CATTA--TGACGA-TAAGGTAT-ACGGTAACG
gi|7 : tcttttcattaaaccagtatgcgaacttgataatatgctttgtacgtaggtttggataacaaatgc-AATTCTCT-CAC--CC-CCCA-CA-TTG-TTAGG-T-TTTCAAAGA-------TAC---------C--GGG-C-TA-TCAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACC-TTTTATAA--A-TA-AT-GA-CAT--GTGCTC-C--AAAT-ATAC-GGT-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--A-TTTC-T--TCCATT-GA------------------------AT-AA--AAA--T-G-GTA-TTTTT------------------------AC-----------T-AGTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGA----------------------------TCG-C-ATAG--CTTT-TCTA--TCTTT------TT---G-GAT-------------C-ATCATGTTCT------AAAATCAAA-AAAATGTA--AT--A-AATAG-AA-AATGC--AATG---C-TT--TT--TG--TTGGA-TATCA-AA-T-T----TT---------TC-ACTT-ATGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TT-AAA-TATTG---------AAANNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNA-TA---TACAT-GTAGAGATA-ATCTTT-TTTTAT---AATTATCATGAAA--TACAGAAG-TTTTGAC-AGTCCCTATTACTAAGGCTG-------A-----AA-TTAAG---G-CAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TATATCTTACAA--TTA------CATGCggaacgtttcgacgatagacatt
gi|8 : AATCGCATGT-TGAT--GGAAACTTT---ATTAC-AGGG-CGTTTTGA-G-CGC-ATGA-C----C-----------------AATGCACCCTATAAAGAGGTCCCAA---------CCA-------AT-ATGC-ATATGTAT-ATTTA---TTATACATAT-AAAC-AATTCTCT-CAC--CC-CC-A-TA-TTGGTTATA-T-TTGCAAAGT-------TAC---------C--GGG-C-TACTTAAAGATTT-CAG-CTCCATAC---------CTA-T--AG-AAATTCATCT-C---TTT---------------TTTA---AA-CACC-TTTTATAA--AATAGAT-TA-CTTT-GTGTTC-C--AAATTATAC-GGT-CATTTGAAATAG-GAAAAG-A-CG-CATTA--ATGT-AAC-AT-------TT--ATT-ACATTTT-CAATAGT-AAAATACT-GT--A-TTTT----TTCATT-GA------------------------AT-AA--AAA--T-T-ATA-TTTTT-ACT--A-------TTGAACAATAAC-----------T-AGTG-AAAAT-ACATCAC----TGGA-------------TTGTGAAGGT-------------AC---TGATTG-TG-AAA-TA-TTATGGTT------TTG-C-ATAG--CTTT-AATA--TCTT-------TT---GAGA
gi|9 : gaacatattttcattaaaccaaataagcgaaagtcgctttgtacgtcattttgacaacGAAACTTTT--ATTAC-GGGG-CG--TTGA-GGTGCAAT-A-C----C-----------------AA----------------ATTCCAA---------C----------T-ATA--ATATACAT-AT------------AAATT--AC-AATTCTCT-CAC--CCGCC-A-CA-TTG-TTAGA-T-TTGCAAAGA-------TAC---------C--GAG-------TAAAGATTT-CAG-C-CTATACCTATATATACTA-T--AG-AAATTCATCT-C---TTTA-A-GTAA-------TTTATTAAA-CACC-CTT-ATAG--A-TA-AT-GA-CA-T-GTGCTC-CAAAAAT-ATACGCGT-ATTTTGAC-T-G-GAAAAG-AACG-c
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): ACGACATCTTTTCATTAAATCAATTAAGCGACTTGATAAAGTCGCTTTGT
Alignments
lowQualScore : 1111 1 7777777777777777777777777777777777777777 2222222222222222222222 11111111 111111111 111111111 222222222222222 1111 1111111 222222222222222222222222 11 11111111111 55555555555555555555555555555555555555555 22222222222 55555555555555555555555555 111111111111111 1111111 11111 111111 22222 1 222 1111 222 1 2222222222222 3333333 11111111 11111111111 22222 1 2222222222 555555555555555555 333333 333 33333333333 111 77777777777777777777777 11 11
lowQualScore : 5 8 4 7777 4 4 0 4 0 4 8 8 2222222222222222222222222222222222222222 2 8888888888888888888888 4 9 1 4 777 0 3 4 4 4 55 4 4 4 4 4 4 4 44444444 666666666 55 4 4 4 8 4 4 666666666 8 55 4 4 777 111111111111111 44 4 8 8 55 8 4 4 4 8888 4 66 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 0000000 33 5 2 44 2 66 9999 5 555555555555555555555555 33 22 666 2 2 9999999999 2 2 2 2 33333333333 3 3 2 66 6666 2 66666666666666666666666666666666666666666 33333333333 2 2 888888 2 2 33 2 00000000000000000000000000 555 777777777777777 33 8888888 66 22 33 33 2 99 2 33 33333 44 44 44 0 3 555 3 3 3 3 2 2 6666 44 8 3 0 3 555 6 555 444444 3 3 3 22222 4 1 4 66 55 1 5 5 0 5 5 5 888 00 5 555 5 7777 5 8 666 0 333 1 6 5 5555555555555 6 3 88888 3 3 3 3 3 666 3 55 2222222 4 44444444 99999999999 4 8 00000 55 4 44 4 2 4444444444 5 777 777 5 5 555555555555555555 222222 111 8 8 8 3 8 0 11111111111 8 99 0 111 8 0 44444444444444444444444 11 11 8 11 8
lowQualScore : . . . .... . . . . . . . . ........................................ . ...................... . . . . ... . . . . . .. . . . . . . . ........ ......... .. . . . . . . ......... . .. . . ... ............... .. . . . .. . . . . .... . .. . . . . . . . . . . . . . . . ....... .. . . .. . .. .... . ........................ .. .. ... . . .......... . . . . ........... . . . .. .... . ......................................... ........... . . ...... . . .. . .......................... ... ............... .. ....... .. .. .. .. . .. . .. ..... .. .. .. . . ... . . . . . . .... .. . . . . ... . ... ...... . . . ..... . . . .. .. . . . . . . . ... .. . ... . .... . . ... . ... . . . ............. . . ..... . . . . . ... . .. ....... . ........ ........... . . ..... .. . .. . . .......... . ... ... . . .................. ...... ... . . . . . . ........... . .. . ... . . ....................... .. .. . .. .
lowQualScore : 7 7 5 0000 4 4 0 4 7 4 9 9 7777777777777777777777777777777777777777 9 1111111111111111111111 4 2 9 4 888 8 2 4 0 0 55 0 0 0 0 0 1 0 22222222 000000000 55 1 0 0 0 0 0 000000000 0 55 0 0 000 666666666666666 66 0 0 0 55 0 0 0 4 7777 4 11 4 4 4 4 4 4 0 0 6 6 3 6 6 6 6 0000000 99 7 9 11 9 88 5555 7 777777777777777777777777 77 77 444 7 9 9999999999 9 9 9 9 66666666666 1 1 3 88 1111 9 77777777777777777777777777777777777777777 11111111111 9 9 222222 9 9 99 6 33333333333333333333333333 000 777777777777777 99 1111111 44 44 99 99 9 44 9 99 88888 22 22 22 5 1 111 1 1 1 1 9 9 5555 22 2 1 5 1 444 2 444 222222 3 3 3 99999 0 7 4 11 44 9 0 0 9 7 7 7 777 66 7 777 7 6666 0 7 777 1 999 2 5 0 9999999999999 6 4 66666 2 6 6 6 6 444 6 00 3333333 0 55555555 00000000000 0 0 00000 55 0 44 4 8 8888888888 0 222 111 7 7 888888888888888888 555555 444 0 0 0 8 0 8 44444444444 0 44 8 666 8 8 00000000000000000000000 22 66 0 00 0
consensus : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N--AT-N--TT-AT-GTT------TTG-C-ATA--GCTTT---------TATA--TC---------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
Reference ( family-1056 ) : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--C--AT-T--TT-AT-GTT------TTG-C-ATA--GCTTT---------TATA--TC---------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ANAACTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|1 : AATCGCATGT-GAATAGG-AAACTTT---ATTAC-GGGG-CGTTTTGA-GGCGC-AT-AAC-----------------C----AATGC-------------ACCCTAAAAGTCCAACC--A---------T-ATGCT-TATGTAT--TTTA---TTATACATATTAAACTAATTCTCT-CA-C--CC-C-A-TA-TT---T-ATATTTG-CAAAGT-------T-C---------C--GGGGCCTA-TTAAAGATCTGCAG-C-CCATAC---------CTAAT--AG-AA-TTCATCTGC---TTTA-----TA----------A--AAA-CACT-TTT-ATAA--AATA-AT-TA-CTTT-GT---T-C--AAAT-ATAAC-G-G-TTCATTAGAA-T-G-GAAAAG-AACG-CATAA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAATAGC-AAAA-ACT--T--ATTTT-AA-TCCATT-GA------------------------ATAA--AAAA-T-G-AAT-TTTTT-ACT--A-------TG-A-AG-AA-TAAC-----------TAAGTA-AAAATAACA--AC----T-GA-------------T--------TGTGAAGTT-----AC---TGTTGGT--G--AT-A--TT-AT-GTT------TTG-C-ATA--GCTTTA--------TATACTTT---------TT---GAGAC-------------C-TTCATGTT--CT------AAAACCAAAGAAAATTTA--AT--A-AATTAAAA-TAGTC--AATG---CTTT--TT--AG--TT-GA-TATCG-AATT-T-T-ATTTC-ACTT-ATAAGAT----AGGA--CTTTTA-AAATATT-TTCT---TCCGTG-CT---TCG---T-AC-TAG-TGAAAA-TA-TGAAAAAAAA-AAAAACTGT-CTCACTCGTG--AAT-AAATTCAAAAATCC-ACACTACGTG-TGAC-AAAGCATTGAATCTGTCCTC-TA---TTTATAATAAAG--G-A---TTTTTTATAATAACT-TCATGAA---TACAGAAG--TTTGACAAGTCCCTATTACTAAAGCTA-------ACGTTTAAATTAAG---A-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGAACTTACAA--TTA------CATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT---A-CAAAATATTTTCT-ACATT-AACTTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACAAATGATAAATGTTCACAAAAAAGCAACAATT-AATTAAATT---AGCCACA-TTA-CATTAA-TATCAATGTATATGA-------TATTTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGAT-AACAATCACCATGTATAATGATAAACAATCACTCAATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|10 : acatcattttcaattaaaaccaaaataatggacttgaaaaagtcgctttgtacgtcgtttttgacaaca-------TT--ATT-ACATTTT-CAACAGT----------GT--ATTTT-A--TCCATT-GAATAAAACCATTTTCACGAGTGAAAATAACAAAA--T-G-TTA-TTTTC-ACT--A-------GT-G-AA-AA-TAAC-----------AA-GTA-ATTGTGACG--TCATGTT-GC-------------T--------C-------------AG---TGATTGT--A--AC-G--TT-AT-GTT------TTG-T-ATA--GCTTA---------TACG--TCC--------TT---GAGATTGAAATACATGTAC-ATCATGTT--CTA-----AAA--CAAAGTAAATGTA--AT--A-AACAGAAA---TGC--AATG-----TTAATT--AG--TTGTA-TATGG-AA-T-T-T-ATTTC-ACTT-GTGGGAC----AGAA--TTTTTA-AAATA-T-TTCA---CTCGTG-CT---T
gi|11 : TGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------GT--ATT-ACATTTT-CAACAGT-GAAATACT-GT--ATTTT-A--TCCATT-GA------------------------AT----AAA--T---ATA-TTTTT-ACT--A-------TC-G-AA-AA-TAAC-----------TA-GTG-AAAGTAACA--AC----T-GATTGTGACATCATGT--------T-------------AC---CGATTGT--G--AC-A--TT-AT-GTT------TTG-C-ATA--GC-TT---------TATA--TCTTTTGAGATTT---GAGAT-------------C-ACCATGTT--CT------AAAACCATAGTAAATGTA--AT--A-AATAG-AA-AATTC--AATGGGTT-TT--TT--AC--TTGGA-TATGG-AA-T-T-T-ATTTC-ACTT-
gi|12 : T--ATT-ACATTTT-CG-CAGT-GAA-TGCT-GTTTATTTT-AATTCCATTTGA------------------------ATAA--AAAAGT-G-ATA-TGTTT-ACT--A------------------------------------GTG-AAAATAAC---------T-GA-------------T--------T------------------TGATCGT-----------TT-AT-GTTACAGTGTCG-C-TTG--GCTTT---------CTTC--CT---------TT---GAGAT-------------C-ACCATGGT---TA-----AAAG--AAAGAATATATACTATGAA-AATAACAC-AATTC--AATG---T-TT--TT---G--TT-----ATGGTAA-TGT-T-ATTTC-ACTT-GTGTGAC----AGAA--TTTTAATGAATATT-TTTT---CTGGTG-CTTTCTTGCACA-TC--CG-TG-AAA-TATacgtcacttatgagaccgg
gi|13 : T-------TT--ATT-ACATTTT-CAACAGT-GGAATACT-GT--ACTTT-A--TCCATT-G------------------------------------------A-TTTTC-ACT--A-------GT-G-AA-AA-TAACAATATTCACTATA-TTG-AAAATAACA--CC----C-GA-------------T--------T-------------G----TGA-CGT--C--ATATTGTT-AT-GTT------TTG-T-ATA--GCTGT------------------------------------------------------ACGTC--C---------AACCAAAGAAAATGTN--NN--N-NNNNNNNN-NNNNN--NNNN---N-NN--NN--NN--NNNNN-NNNNN-NN-N-N-N-NNNNN-NNNN-NNNNNNNNNCTAGGA--TTGT---AAATATT-TTCA---CTCGTATTT---TCG---C-AC-TCA-TGAAAA-TAT
gi|14 : A------------------------ACAA--AAG--T-GTAAA-TTTTTCACT--AAGTGTAGTT-G-AA-AA-TATA-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-----------------------GT--A--AC-G--TT-AT-ATT------TTG-T-ATATAGCTTTGTCCTTTGATAT---TT---------TT---AAGAT-------------C-ATCATGTC--CTA-----AAAGC-AAAGAAAATGTA--AT--G-AATAGAAA-ATTTC--A
gi|15 : aaatactgccaattatcacgtaaatatgaattaaaaatagtactaacaatattagtattttcactggttgaaaagacccaaaaaatAACTATCATGAAA-T-ACAGACGTTTTATA--AGTCCCTATTACTAACGCTA-------A-----A------------CG--TTTAAAG-TAGC-AC-A-TCTA---GTA-TAGATTTTACAA--TTACATGTACATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTA-----TGAAA--AA-CGAAATATTCAGTAACGTT-AACTTTATTTACTAT-------CCATG-CATTT--TGAC-A-TAGGGCAT-ACAA-ATCGTTAAATTTTCTC------------------A------AACAATC-AC-TCGATTtg
gi|16 : a-GAAACGCAACA-TACTAACACGT-A-A-ATAAACTAATT--ATT-ACATTTT-CAAGAGT-AAAATACT-TT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-A-ACA-ATCTC-ATT--A-------TT-G-AA-AA-TAAC-----------ggttgacttgatgagacaatatc
gi|17 : agggtgaT--CTA-----AAA-CCAAG--AAATATA--AT--ATAATA--AA-AATTC--AATG-----TT--TC--AG--CTTGA-TATGT-AA-T-T-T-CATTC-ACT--GTGAGAC----AGGA--TT------AACA-----CT---C--------------------------TGAAAA--------AAAAAA-AAATCCTGT-----TTCGAG--AAA-TATTCC---AATCC-A-Aaaatttcacaacaaattgtgacgtcacgctaaaatagaaaagttattgtttttagttgggtat
gi|18 : catagatatcacactttttcggtagctactgtctgCCAAAGAAAATGTA--AT--G-AATAG-AA-AATTCTAAAT----T-TT--TT--AG--TTGGA-TATGG-AA-T-T-T-CTTTG-TATT-GTGAGAG----AGAA--TTTTAA-AAATGTT-TT-T---CACA-----------------C-TCA-TAAAAA-TAT----AAAAAA-AAATCTTGT-CTCACTCGTG--AAA-TA
gi|19 : TTAAAG-TAGT-AAGA-TCCATGCATA-TAGATCTT-CAA--TTA---------GCGGG-ATA--------GACTTCACAG-----------TAGC-TTT-----TCAATTGAACCGAAAT-TTTTCTAA-GTC-AACTTTA-TTAC--T-----ACCCATG-CATTAATTGAC-A-TA
gi|2 : ATCGCATGT-TGATAGG-AAACTTTTTTATTAG-CGGG-CGTTT-GA-GGTGC-ATGA-C-----------------C----AA----------------ATCC-AA---------C--A---------T-ATACAATATGCAT-ATTTACCTTCATACATATTAA-C-AATTATCT-CA-CACCC-CCAACAATTG-TT-AGATTTG-CAAAGA-------TACGTTAACTATCAAGGGGC-TA-TTCAATATTTTCAG-C-TTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-AAGATA-------TTTATCAAAACACC-TTTTATAA--A-TA-ATCGT-CAAT-GTGCTCGC--AAAT-ATA-C-G-GGT-CATTTGAA-T-G--AAAAG-AACG-TATTT-TATGTTA-C-AT-------TT--ATTCACATTTTTCAACAGT-AAAATACT-GT--ATTTTTA--TC-ATT-GA------------------------ATAA--AAAATT-G-ATA-TTTT--ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTA-AAAATGACG--AA----T-GA-------------T--------T-------------AC---TGATTGT--TCAAT-T--AT-AT-GTT------TTG-C-ATA--GC-TT---------TATA--TC---------TTTTCGAGAG-------------CAATCATGTT--C-A-----AAA--TAAAG-AAATGTA--AT--A-AAAAGAAA-A--TT--ACTG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-TAATTTC-ACTT-ATGAGAC----AGGATTTTTTAA-ATATATTATTCT---CTCGTG-CT---TCG---ATTC-TCG-TGATAA-TA-TG--AACAAA-AA---CTGTCCTCACTCGTA--AAATAAATTC-AAAATCCGA-ACT-CTTG-T-AC-AAAGTATCAAT--TGTCCTCGTATT-TATAT-ATGGAG--A-GTTTTTTTTT-T-ATAATTATCATGAAA-TATCAGAAGTTTT--AC-AGTCCCTATTACTAAAGCTG-------A-----AATTAAAATGCG-CAATTTT-AAG-TAGC-AA-T-CCCA---GTATTAGATCTTAC-A--TTA------CATGCGGGAATA--------GACTTCATAG-----------TA-T-TTT-----TCAAT--TA-AGAAATATTTTCCAAC----ACCTTTA-TTACTA------ACCCATG-TATCA--TGAC-A-TAGGGTATCACAA-AACGTTAAATTTTCAC-------------------AAAAGCAAC-ATT-G----AATTATTAGCCA-ATTTA-TATTGATTATC--CGTATATGA-------TA-TTTTGCGCATTGCCATACTCAAGT---ACATGTATAATGATTAACAATCA------------------------TCGATT--GTTGACTTGA-TGGG--ACAAT-ATCGT
gi|20 : gaacatctttcatttaaaaccaagtaagcaagacttgataaaatgtttgttacgtagttttgataacaacgTTTT--ATTACAGGGG-CGTTT-GA-GGTGC-AT-A-CAATGCAGTGAATGCACCCTAAAAA----------------ATCCCAA---------C--AATTCACGAAT-ATCCAATATGCGTGATTTA---TTATACATc
gi|21 : tacgtttttctgatgactcgcaTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTT-CAAA---------------------------------TTAAAGATTT-CAG-C-CTATAC---------CTA-TGTAG-AAATTCATCT-C---TTTC-A-TACA-------TTTATTAAA-CACCTTTT-ATAA--A-TA-AT-G
gi|22 : ---G-CAATT---AAG-TAGC-AA-A-TCCA---ATG-TAGATTTTACAA--TTAC--------------ATA--------ATTTTCATAG-----------TA-C-TTA-----TCAAT--AA-TGAAATGTTTTCTAA-GTT-AACTTTATTTAC--T-----ACCCAT
gi|23 : AAG-AAGC-AA-A-TCCA---GTA-TAGATCTCATAC--TTA------CATGCGGG-GTAGATTACACGACTTCAAAGTACAATTATTATA-C-TTA-----TCAAT--AA-TGAAATATTTTCTAAC
gi|24 : AATAACA--AC----T-GA-------------T--------TGTGACGTCATGTTAC---TAATTGT--G--AC-C--TT-AC-ATT------TTGTC-ATT--GCTTT----------ACG--TCCTTTGAAATTT---GAGAT-------------C-ATCATGAT--CT------AAAACCAAA
gi|25 : G-TACCA-TGTGT-A-T-GT-------TTTTATT-ACATTTT-CAACCTC-AAAATACT-G---AAATT-A--TCCATT-GA------------------------ATAA--AAAT-T-T-ATA-TTTT
gi|26 : -ACTT-GTGAGAC----TGAA--TTTTTT-CA-TATT-TTCA---CCAATG-CT---TCG---A-TT-TTG-TGAAAA-TAT----AAAAAA-AAc
gi|3 : AATCGCATGC-TGATTAGGAAACTTTC---TTAC-GGGGGCGTTT-GA-GGCGC-AT-A-C-----------------C----AATGCACCCTAAA-----ATCCCAA---------C--A---------A-ATGCAATATGTAT-ATTTA---TTATACATATTAAAC-AATTTTTTCCA-C--CC-GCA-TA-TTG-TT-ATA-TTG-CAAAGT-------TAC---------C--GGGAC-TA-TTAAAGATTT-CAG-C-CCATAC---------CTA-T--AG-AA
gi|3 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaCT-A---TTAA-A-GAT--------TTCAGCCCA-TACC-TAT-AGAACCA-TA-AT-TA-C--T-GTGTTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-CATTA-TATGT-A-C-AT-------TT--ATT-ACA-TTT-CAAAAGT-AAAATACT-GT--A-TTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACG--A-------TT-GAAA-AA-TAAC-----------TA-GTG-AAAAT-ACA--AC----T-GATCGTGAAGG----T--------T-------------AC---TGATTGT--G--AT-A--TT-AT-GTG------TTG-C-ATA--GCTTT---------TAT----------------------------------------TCATGTT--CTAAATTTAAAATCAAAGAAAATG-A--AT--A-AATA-AAA-AAGTC--AATG---CTTT--TT--AG--TTGGA-ATTCG-AA-T-TAT-ATTTC-ACTT-ATAAGAT----AGGA--TTTT-A-AAATATT-TCCA---TTCGTGTTT---TCG---T-AC-TCG-TGAAAA-TA-TG--AAAANN-NNNNNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNN-NN---NNNNN-ATAAGA--G-A----TTTTTAT-ATAACTATCATGAAA--TACAGAAG-TTTTGAC-AGT-CCTATTACTAAAGCTAAACGTTTA-----AAATTAAG---A-CAATTTTAAAG-TAGC--A-A-TCCA---GTA-TAGATCTTGCAA--TTAC-----AATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT--AA-CAAAATATTTTCTAACATT-A--CTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACA-----------------AAAAAGCAACAATTAA--TTAATT---ACCCA-A-TTA-CATCAA-TATCAATGTATATGAATACATGTA-TTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGATAAACAATCA-----------------------CTCAATTA-GTTGACTTGA-TGAG--ACAAT-ATCGTccataattactgtgttccaaatatacggtcatttgaatggaaaagaacgcattatatgtacatttattacatttcaaaagtaaaatactgtatttatccattgaataaaaatgatatttttacgattgaaaaataactagtgaaaatacaactgatcgtgaaggttactgattgtgatattatgtgttgcatagcttttattcatgttctaaatttaaaatcaaagaaaatgaataaataaaaaagtcaatgctttttagttggaattcgaattatatttcacttataagataggattttaaaatatttccattcgtgttttcgtactcgtgaaaatatgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagatttttatataactatcatgaaatacagaagttttgacagtcctattactaaagctaaacgtttaaaattaagacaattttaaagtagcaatccagtatagatcttgcaattacaatgcgggttagacttcatagtacatgtactaatcaataacaaaatattttctaacattacttatttactacatatgcaatatgacatagggtatacaaaacgataaatgttcacaaaaaagcaacaattaattaattacccaattacatcaatatcaatgtatatgaatacatgtattttgacattgtatactcatttacacatgtataatgataaacaatcactcaattagttgacttgatgagacaatatcgtc
gi|4 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaaatcgcatgctgattaggaaactttcttacgggggcgtttgaggcgcataccaatgcaccctaaaatcccaacaaatgcaatatgtatatttattatacatattaaacaattttttccacccgcatattgttatattgcaaagttaccgggaAATCGCA-GT-TGATAGGATCACTTTT---TTAC-GGGG-CGTTTTGA-GGTG-----A-C-----------------C----AA----------------ATCCCAA---------C--A---------TTATACAATATGCAT-ATTTA---TTATACATATTAAAC-AATTATCT-CA-C--CC-CCA-CA-TTG-TTAAGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGA-TT-CAG-C-CTATAC---------CTATT--AGAAAATTCATCT-CTTTTTTA-A--ATATTTTATTTTTATCAAA-CACC-TTT-ATAA--A--A-AT-GG-CA-G-GTGCTC-C--AAAT-ATG-C-G-G-T-CATTTGCA-T-G-GAAAAG-AACGTTATTA-TATGT-A-C-AT-------TT--ATTAACATTTT-CAACAGT--AAATACT-GC--ACTTT-A--TCCAT---A------------------------TTAA--AAA--T-T-ATA-TTTTT-ACT--G-------TT-G-AA-AA-TAAC-----------TA-GTGAAAAATGACAC-AT----T-GA----------------------T-------------ACTGATGATTGT--C--AT-T--TT-AT-GTT------TTG-C-ATA--GC-TT---------TATA--TCTT-------TT---GAGAT-------------C-ATCAT-TT--CTA-----AAATTCAAAGAAAATGTA--A---A-AATAG-AA-AATTC---ATG---C-TT--TT--TATTTTGAA-TATCA-AA-T-T-T-ATTTCAACTTAGTGAGCA----AGGA--TTTTAA-AAATTAT-TTCT---CTCGTG-CT---TCG---T-TCTTCGTTGAAAA-TA-TG--AAAAAACAAAACCTGT-CTCACTCGTGTAAAA-AAATTC-AAAATCC-A-ACTACATGTT-ACAAAAGCATCGAA---GT-CTC-TATT-TATAT-ATAGAG--ATATTTTTTTTTTT-ATAATTATCATGAAA--TACAGAAGTTGTTGAC-AGTCCCTATTGCTAAAGCTG-------------AATTTAAG---G-CAATTTT--AGCTAGCAAA-A-TCCA---GTA-TCGATCTTACAA--TTA------CATGCGGG-ATA--------GACTCCATAG-----------TA-C-TTT-----T-AAT--A---------------AACGTT-AACTTTA-TTACT-T-----A-CCATGTCATT---TGAC----AGGGTAT-ATAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT------AATT---AGCCA-A-TTA-TAT----TATCAACGTATATGG-------T-----------------TAC-CATG-TACACATGTATAATGATTAAC-ATCA-----------------------CTCGATTGCGTTGAC-TGATTGAG--ACATT-ATCGTc
gi|5 : acgacatattttcattaaaaccaagtaagcgactatataaatcgctttgtagcgttagtttgataacaAATCGCATTTGTGATAGGGAAACTTTT--ATTAC-GGG--CGTTTTGA-GGTGC-AT-A-C-----------------T----AA----------------ATCCCAA---------C--A---------C-ATACGATATGCAT-ATTTA---T-ATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-TAGTTTT-TAAAGA-------TAC---------C--GGGGC-TA-TCAAAGATTT-CAGGC-CTATAC---------CTA-T--AG-AAATCCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATTTGTGCTC-C--AAAT-ATA-CCA-G-T-CATTTGAA-T-GCGAAAAG-AACG-TATTA-TATGT-A-CCAT-------TT--ATT-ACATTTT-CAACAGTTAAAATACTTGTT-ATTTC-A--TCCATT-GA------------------------ATAA--AAA--TTG-ATA-TTTTT-ACTTTA-------TTTG-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TG-TTGT--C--AT-T--TTTAT-GTT------TTG-C-CAA--GCCTT---------TCTA--TC---------TT---GAGAT-------------C-ATCATGTTTTCCA-----AAAATCAAAGAAAATGTA--A---A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-C-ATTTC-ACTT-ATGAGAC----CAGG--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAATTATTG--AAAAAA-AAAACCTG--CTCACTCGTG--AAA-TAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TGAAT-ATAGAG--G-ATTTTTTTTTAT-AAAGTTATCATGAAATTTACAGAAGCTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---GCCAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TAT-TCTTACAAATTTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTTAAACTTT-TTTACTAT-----ACCCATG-CATAA--TGAC-ATTTGGGTAT-ACAA-AA-GTTTAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTATTATTAA-TATCAACGTATATGA-------TA--TTTG-ACATTG-CATACTCATGTTACACATGTATAATGATAAACAATCA-----------------------CTCGATTG-GTTGACT--A-TGAGGTACAATCATCGT
gi|6 : TGT-TGAT-GGGAAACTTT---ATTAC-GGAG-CGTT--GAAGGTGC-AT-ATC-----------------C----AA----------------ATCC-AA---------C--A---------T-AT-CAA-ATGCA--ATTTA---TTATACATAT-AAAC-AATTCTCT-TA-C--CC-AGA-CA-TTG-TT-A-ATTTGGCAAAGACACGTAATAC---------C--GGGGC-TA-TTCAAGATT--CAG-C--TATAC---------CTA-T--AG-AAATTCATCT-C---TTTCTA-GAT--------TTTATCAA--CACT-TTT-ATAA--A-TA-AT-GAACAT--GTGT---C--AAAT-ATA---G-G-T-CATT-GAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-A-ATTTT---ACAGT-AAA-TACT-GT--ATTTT----TCCATTTGA------------------------ATAA--AA---T-G-GTAATTTTT-ACTG-A-------TT-G-AA-AAATAAC-----------TA-GT--AAAATGACA--AC------GA-------------T--------T-------------A----TGATTGT--C--AT-T--TT-AT-GTT------TTG-CCATA--GATTT---------TATT--TG---------TT---GAGAT---------------ATCATGTT--T-------AAAACCAAG--AAATGTA--AT--A-AATAGAAATAATTC--AATG---C-TT--TTTTAG--TTGGAGTATC--AA-T-T-T-GTT-C-ACGT-ATGAGAC----AGGA--TTT--A-AAATATT-T-CTAGGCTCGTG-CT---TCG---A-TC-TCG--GAACA-AAT-----GAAAA-AAAACCTGT-CTCGCTCGTA--AAA-TATTTCAAAA-TCC-A-ACTACATG-T-CA-AAAGCATCGAA--TGTC-TC-TAAGTTATAT-ATGGAG----ATTTTTATTT-T-ATAATTCT-ATGAAA-T-ACAGAAGTTTT-GAC-ATTCCCTATTACTAAAGCTG-------A-----AATT-AAG---G-CAATTTTAAAG-TAGC-AA-AATCCA---GTA-TTAATCTTACAA--TTAA------ATG-GGG-ATA--------GACTTCATAG-----------TT-A-TTT-----TCAAT--AA-CGAAATATTTTC------T-AACTTTA-TTACTAGGGAGAGCAGATG-CATTA--TGACGA-TAAGGTAT-ACGGTAACG
gi|7 : tcttttcattaaaccagtatgcgaacttgataatatgctttgtacgtaggtttggataacaaatgc-AATTCTCT-CACC--CC-CCA-CA-TTG-TT-AGGTTTT-CAAAGA-------TAC---------C---GGGC-TA-TCAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACCTTTT-ATAA--A-TA-AT-GA-CA-T-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTC-T--TCCATT-GA------------------------ATAA--AAA--T-G-GTA-TTTTT---------------------------AC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGA------------------------------TCG-C-ATA--GCTTT---------TCTA--TCTTT------TT---G-GAT-------------C-ATCATGTT--CT------AAAATCAAA-AAAATGTA--AT--A-AATAG-AA-AATGC--AATG---C-TT--TT--TG--TTGGA-TATCA-AA-T-T----TTTC-ACTT-ATGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TT-AAA-TATTG---------AAANNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNA-TA---TACAT-GTAGAGATA-ATCTTTTTTTAT---AATTATCATGAAA--TACAGAAG-TTTTGAC-AGTCCCTATTACTAAGGCTG-------A-----AA-TTAAG---G-CAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TATATCTTACAA--TTA------CATGCggaacgtttcgacgatagacatt
gi|8 : AATCGCATGT-TGAT--GGAAACTTT---ATTAC-AGGG-CGTTTTGA-G-CGC-ATGA-C-----------------C----AATGCACCCTATAAAGAGGTCCCAA---------CCAA---------T-ATGCA-TATGTAT-ATTTA---TTATACATAT-AAAC-AATTCTCT-CA-C--CC-CCA-TA-TTGGTT-ATATTTG-CAAAGT-------TAC---------C--GGG-C-TACTTAAAGATTT-CAG-CTCCATAC---------CTA-T--AG-AAATTCATCT-C---TTT---------------TTTA---AA-CACC-TTTTATAA--AATAGAT-TA-CTTT-GTGTTC-C--AAATTATA-C-G-G-T-CATTTGAAATAG-GAAAAG-A-CG-CATTA--ATGT-AAC-AT-------TT--ATT-ACATTTT-CAATAGT-AAAATACT-GT--ATTTT----TTCATT-GA------------------------ATAA--AAA--T-T-ATA-TTTTT-ACT--A-------TT-G-AACAA-TAAC-----------TA-GTG-AAAAT-ACATCAC----TGGA-------------TTGTGAAGGT-------------AC---TGATTGTGAA--AT-A--TT-ATGGTT------TTG-C-ATA--GCTTT---------AATA--TCTT-------TT---GAGA
gi|9 : gaacatattttcattaaaccaaataagcgaaagtcgctttgtacgtcattttgacaacGAAACTTTT--ATTAC-GGGG-CG--TTGA-GGTGCAAT-A-C-----------------C----AA----------------ATTCCAA---------C------------T-AT--AATATACAT-AT------------AAATT--AC-AATTCTCT-CA-C--CCGCCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GAG-------TAAAGATTT-CAG-C-CTATACCTATATATACTA-T--AG-AAATTCATCT-C---TTTA-A-GTAA-------TTTATTAAA-CACC-CTT-ATAG--A-TA-AT-GA-CA-T-GTGCTC-CAAAAAT-ATA-C-GCG-T-ATTTTGAC-T-G-GAAAAG-AACG-c
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): ACGACATCTTTTCATTAAATCAATTAAGCGACTTGATAAAGTCGCTTTGT
Alignments
lowQualScore : 1111 1 7777777777777777777777777777777777777777 2222222222222222222222 11111111 111111111 111111111 222222222222222 1111 1111111 222222222222222222222222 11 11111111111 55555555555555555555555555555555555555555 1111 55555555555555555555555555 111111111111111 1111111 11111 111111 22222 1 222 1111 1 222 1 2222222222222 3333333 11111111 11111111111 22222 1 2222222222 555555555555555555 333333 333 33333333333 111 77777777777777777777777 11 11
lowQualScore : 5 8 4 7777 4 4 0 4 0 4 8 8 2222222222222222222222222222222222222222 2 8888888888888888888888 4 9 1 4 777 0 3 4 4 4 55 4 4 4 4 4 4 4 44444444 666666666 55 4 4 4 8 4 4 666666666 8 55 4 4 777 111111111111111 44 4 8 8 55 8 4 4 4 8888 4 66 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 0000000 33 5 2 44 2 66 9999 5 555555555555555555555555 33 22 666 2 2 9999999999 2 2 2 2 33333333333 3 3 2 66 6666 2 66666666666666666666666666666666666666666 2222 555 2 2 5 2 2 33 2 00000000000000000000000000 555 777777777777777 33 8888888 66 22 33 33 2 99 2 33 33333 44 44 44 0 3 555 3 3 3 3 2 2 6666 44 8 3 0 3 555 6 555 444444 3 3 3 22222 4 1 4 66 55 1 5 5 0 5 5 5 888 00 5 555 5 7777 5 2 5 0 333 1 6 5 5555555555555 6 3 88888 3 3 3 3 3 666 3 55 2222222 4 44444444 99999999999 4 8 00000 55 4 44 4 2 4444444444 5 777 777 5 5 555555555555555555 222222 111 8 8 8 3 8 0 11111111111 8 99 0 111 8 0 44444444444444444444444 11 11 8 11 8
lowQualScore : . . . .... . . . . . . . . ........................................ . ...................... . . . . ... . . . . . .. . . . . . . . ........ ......... .. . . . . . . ......... . .. . . ... ............... .. . . . .. . . . . .... . .. . . . . . . . . . . . . . . . ....... .. . . .. . .. .... . ........................ .. .. ... . . .......... . . . . ........... . . . .. .... . ......................................... .... ... . . . . . .. . .......................... ... ............... .. ....... .. .. .. .. . .. . .. ..... .. .. .. . . ... . . . . . . .... .. . . . . ... . ... ...... . . . ..... . . . .. .. . . . . . . . ... .. . ... . .... . . . . ... . . . ............. . . ..... . . . . . ... . .. ....... . ........ ........... . . ..... .. . .. . . .......... . ... ... . . .................. ...... ... . . . . . . ........... . .. . ... . . ....................... .. .. . .. .
lowQualScore : 7 7 5 0000 4 4 0 4 7 4 9 9 7777777777777777777777777777777777777777 9 1111111111111111111111 4 2 9 4 888 8 2 4 0 0 55 0 0 0 0 0 1 0 22222222 000000000 55 1 0 0 0 0 0 000000000 0 55 0 0 000 666666666666666 66 0 0 0 55 0 0 0 4 7777 4 11 4 4 4 4 4 4 0 0 6 6 3 6 6 6 6 0000000 99 7 9 11 9 88 5555 7 777777777777777777777777 77 77 444 7 9 9999999999 9 9 9 9 66666666666 1 1 3 88 1111 9 77777777777777777777777777777777777777777 7777 000 0 9 7 9 9 99 6 33333333333333333333333333 000 777777777777777 99 1111111 44 44 99 99 9 44 9 99 88888 22 22 22 5 1 111 1 1 1 1 9 9 5555 22 2 1 5 1 444 2 444 222222 3 3 3 99999 0 7 4 11 44 9 0 0 9 7 7 7 777 66 7 777 7 6666 0 1 7 1 999 2 5 0 9999999999999 6 4 66666 2 6 6 6 6 444 6 00 3333333 0 55555555 00000000000 0 0 00000 55 0 44 4 8 8888888888 0 222 111 7 7 888888888888888888 555555 444 0 0 0 8 0 8 44444444444 0 44 8 666 8 8 00000000000000000000000 22 66 0 00 0
consensus : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N-A---TNTT-AT-GTTTTG-C-ATA--GCTTT---------TATA--TC---------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
Reference ( family-1056 ) : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N-A---TNTT-AT-GTTTTG-C-ATA--GCTTT---------TATA--TC---------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|1 : AATCGCATGT-GAATAGG-AAACTTT---ATTAC-GGGG-CGTTTTGA-GGCGC-AT-AAC-----------------C----AATGC-------------ACCCTAAAAGTCCAACC--A---------T-ATGCT-TATGTAT--TTTA---TTATACATATTAAACTAATTCTCT-CA-C--CC-C-A-TA-TT---T-ATATTTG-CAAAGT-------T-C---------C--GGGGCCTA-TTAAAGATCTGCAG-C-CCATAC---------CTAAT--AG-AA-TTCATCTGC---TTTA-----TA----------A--AAA-CACT-TTT-ATAA--AATA-AT-TA-CTTT-GT---T-C--AAAT-ATAAC-G-G-TTCATTAGAA-T-G-GAAAAG-AACG-CATAA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAATAGC-AAAA-ACT--T--ATTTT-AA-TCCATT-GA------------------------ATAA--AAAA-T-G-AAT-TTTTT-ACT--A-------TG-A-AG-AA-TAAC-----------TAAGTA-AAAATAACA--AC----T-GA-------------T--------TGTGAAGTT-----AC---TGTTGGT--G-A---TATT-AT-GTTTTG-C-ATA--GCTTTA--------TATACTTT---------TT---GAGAC-------------C-TTCATGTT--CT------AAAACCAAAGAAAATTTA--AT--A-AATTAAAA-TAGTC--AATG---CTTT--TT--AG--TT-GA-TATCG-AATT-T-T-ATTTC-ACTT-ATAAGAT----AGGA--CTTTTA-AAATATT-TTCT---TCCGTG-CT---TCG---T-AC-TAG-TGAAAA-TA-TGAAAAAAAA-AAAAACTGT-CTCACTCGTG--AAT-AAATTCAAAAATCC-ACACTACGTG-TGAC-AAAGCATTGAATCTGTCCTC-TA---TTTATAATAAAG--G-A---TTTTTTATAATAACT-TCATGAA---TACAGAAG--TTTGACAAGTCCCTATTACTAAAGCTA-------ACGTTTAAATTAAG---A-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGAACTTACAA--TTA------CATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT---A-CAAAATATTTTCT-ACATT-AACTTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACAAATGATAAATGTTCACAAAAAAGCAACAATT-AATTAAATT---AGCCACA-TTA-CATTAA-TATCAATGTATATGA-------TATTTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGAT-AACAATCACCATGTATAATGATAAACAATCACTCAATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|10 : acatcattttcaattaaaaccaaaataatggacttgaaaaagtcgctttgtacgtcgtttttgacaaca-------TT--ATT-ACATTTT-CAACAGT----------GT--ATTTT-A--TCCATT-GAATAAAACCATTTTCACGAGTGAAAATAACAAAA--T-G-TTA-TTTTC-ACT--A-------GT-G-AA-AA-TAAC-----------AA-GTA-ATTGTGACG--TCATGTT-GC-------------T--------C-------------AG---TGATTGT--A-A---CGTT-AT-GTTTTG-T-ATA--GCTTA---------TACG--TCC--------TT---GAGATTGAAATACATGTAC-ATCATGTT--CTA-----AAA--CAAAGTAAATGTA--AT--A-AACAGAAA---TGC--AATG-----TTAATT--AG--TTGTA-TATGG-AA-T-T-T-ATTTC-ACTT-GTGGGAC----AGAA--TTTTTA-AAATA-T-TTCA---CTCGTG-CT---T
gi|11 : TGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------GT--ATT-ACATTTT-CAACAGT-GAAATACT-GT--ATTTT-A--TCCATT-GA------------------------AT----AAA--T---ATA-TTTTT-ACT--A-------TC-G-AA-AA-TAAC-----------TA-GTG-AAAGTAACA--AC----T-GATTGTGACATCATGT--------T-------------AC---CGATTGT--G-A---CATT-AT-GTTTTG-C-ATA--GC-TT---------TATA--TCTTTTGAGATTT---GAGAT-------------C-ACCATGTT--CT------AAAACCATAGTAAATGTA--AT--A-AATAG-AA-AATTC--AATGGGTT-TT--TT--AC--TTGGA-TATGG-AA-T-T-T-ATTTC-ACTT-
gi|12 : T--ATT-ACATTTT-CG-CAGT-GAA-TGCT-GTTTATTTT-AATTCCATTTGA------------------------ATAA--AAAAGT-G-ATA-TGTTT-ACT--A------------------------------------GTG-AAAATAAC---------T-GA-------------T--------T------------------TGATCGT--TTA---TGTT-ACAGTGTCG-C-TTG--GCTTT---------CTTC--CT---------TT---GAGAT-------------C-ACCATGGT---TA-----AAAG--AAAGAATATATACTATGAA-AATAACAC-AATTC--AATG---T-TT--TT---G--TT-----ATGGTAA-TGT-T-ATTTC-ACTT-GTGTGAC----AGAA--TTTTAATGAATATT-TTTT---CTGGTG-CTTTCTTGCACA-TC--CG-TG-AAA-TATacgtcacttatgagaccgg
gi|13 : T-------TT--ATT-ACATTTT-CAACAGT-GGAATACT-GT--ACTTT-A--TCCATT-G------------------------------------------A-TTTTC-ACT--A-------GT-G-AA-AA-TAACAATATTCACTATA-TTG-AAAATAACA--CC----C-GA-------------T--------T-------------G----TGA-CGT--C-ATATTGTT-AT-GTTTTG-T-ATA--GCTGT------------------------------------------------------ACGTC--C---------AACCAAAGAAAATGTN--NN--N-NNNNNNNN-NNNNN--NNNN---N-NN--NN--NN--NNNNN-NNNNN-NN-N-N-N-NNNNN-NNNN-NNNNNNNNNCTAGGA--TTGT---AAATATT-TTCA---CTCGTATTT---TCG---C-AC-TCA-TGAAAA-TAT
gi|14 : A------------------------ACAA--AAG--T-GTAAA-TTTTTCACT--AAGTGTAGTT-G-AA-AA-TATA-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-----------------------GT--A-A---CGTT-AT-ATTTTG-T-ATATAGCTTTGTCCTTTGATAT---TT---------TT---AAGAT-------------C-ATCATGTC--CTA-----AAAGC-AAAGAAAATGTA--AT--G-AATAGAAA-ATTTC--A
gi|15 : aaatactgccaattatcacgtaaatatgaattaaaaatagtactaacaatattagtattttcactggttgaaaagacccaaaaaatAACTATCATGAAA-T-ACAGACGTTTTATA--AGTCCCTATTACTAACGCTA-------A-----A------------CG--TTTAAAG-TAGC-AC-A-TCTA---GTA-TAGATTTTACAA--TTACATGTACATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTA-----TGAAA--AA-CGAAATATTCAGTAACGTT-AACTTTATTTACTAT-------CCATG-CATTT--TGAC-A-TAGGGCAT-ACAA-ATCGTTAAATTTTCTC------------------A------AACAATC-AC-TCGATTtg
gi|16 : a-GAAACGCAACA-TACTAACACGT-A-A-ATAAACTAATT--ATT-ACATTTT-CAAGAGT-AAAATACT-TT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-A-ACA-ATCTC-ATT--A-------TT-G-AA-AA-TAAC-----------ggttgacttgatgagacaatatc
gi|17 : agggtgaT--CTA-----AAA-CCAAG--AAATATA--AT--ATAATA--AA-AATTC--AATG-----TT--TC--AG--CTTGA-TATGT-AA-T-T-T-CATTC-ACT--GTGAGAC----AGGA--TT------AACA-----CT---C--------------------------TGAAAA--------AAAAAA-AAATCCTGT-----TTCGAG--AAA-TATTCC---AATCC-A-Aaaatttcacaacaaattgtgacgtcacgctaaaatagaaaagttattgtttttagttgggtat
gi|18 : catagatatcacactttttcggtagctactgtctgCCAAAGAAAATGTA--AT--G-AATAG-AA-AATTCTAAAT----T-TT--TT--AG--TTGGA-TATGG-AA-T-T-T-CTTTG-TATT-GTGAGAG----AGAA--TTTTAA-AAATGTT-TT-T---CACA-----------------C-TCA-TAAAAA-TAT----AAAAAA-AAATCTTGT-CTCACTCGTG--AAA-TA
gi|19 : TTAAAG-TAGT-AAGA-TCCATGCATA-TAGATCTT-CAA--TTA---------GCGGG-ATA--------GACTTCACAG-----------TAGC-TTT-----TCAATTGAACCGAAAT-TTTTCTAA-GTC-AACTTTA-TTAC--T-----ACCCATG-CATTAATTGAC-A-TA
gi|2 : ATCGCATGT-TGATAGG-AAACTTTTTTATTAG-CGGG-CGTTT-GA-GGTGC-ATGA-C-----------------C----AA----------------ATCC-AA---------C--A---------T-ATACAATATGCAT-ATTTACCTTCATACATATTAA-C-AATTATCT-CA-CACCC-CCAACAATTG-TT-AGATTTG-CAAAGA-------TACGTTAACTATCAAGGGGC-TA-TTCAATATTTTCAG-C-TTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-AAGATA-------TTTATCAAAACACC-TTTTATAA--A-TA-ATCGT-CAAT-GTGCTCGC--AAAT-ATA-C-G-GGT-CATTTGAA-T-G--AAAAG-AACG-TATTT-TATGTTA-C-AT-------TT--ATTCACATTTTTCAACAGT-AAAATACT-GT--ATTTTTA--TC-ATT-GA------------------------ATAA--AAAATT-G-ATA-TTTT--ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTA-AAAATGACG--AA----T-GA-------------T--------T-------------AC---TGATTGTTCA-A---TTAT-AT-GTTTTG-C-ATA--GC-TT---------TATA--TC---------TTTTCGAGAG-------------CAATCATGTT--C-A-----AAA--TAAAG-AAATGTA--AT--A-AAAAGAAA-A--TT--ACTG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-TAATTTC-ACTT-ATGAGAC----AGGATTTTTTAA-ATATATTATTCT---CTCGTG-CT---TCG---ATTC-TCG-TGATAA-TA-TG--AACAAA-AA---CTGTCCTCACTCGTA--AAATAAATTC-AAAATCCGA-ACT-CTTG-T-AC-AAAGTATCAAT--TGTCCTCGTATT-TATAT-ATGGAG--A-GTTTTTTTTT-T-ATAATTATCATGAAA-TATCAGAAGTTTT--AC-AGTCCCTATTACTAAAGCTG-------A-----AATTAAAATGCG-CAATTTT-AAG-TAGC-AA-T-CCCA---GTATTAGATCTTAC-A--TTA------CATGCGGGAATA--------GACTTCATAG-----------TA-T-TTT-----TCAAT--TA-AGAAATATTTTCCAAC----ACCTTTA-TTACTA------ACCCATG-TATCA--TGAC-A-TAGGGTATCACAA-AACGTTAAATTTTCAC-------------------AAAAGCAAC-ATT-G----AATTATTAGCCA-ATTTA-TATTGATTATC--CGTATATGA-------TA-TTTTGCGCATTGCCATACTCAAGT---ACATGTATAATGATTAACAATCA------------------------TCGATT--GTTGACTTGA-TGGG--ACAAT-ATCGT
gi|20 : gaacatctttcatttaaaaccaagtaagcaagacttgataaaatgtttgttacgtagttttgataacaacgTTTT--ATTACAGGGG-CGTTT-GA-GGTGC-AT-A-CAATGCAGTGAATGCACCCTAAAAA----------------ATCCCAA---------C--AATTCACGAAT-ATCCAATATGCGTGATTTA---TTATACATc
gi|21 : tacgtttttctgatgactcgcaTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTT-CAAA---------------------------------TTAAAGATTT-CAG-C-CTATAC---------CTA-TGTAG-AAATTCATCT-C---TTTC-A-TACA-------TTTATTAAA-CACCTTTT-ATAA--A-TA-AT-G
gi|22 : ---G-CAATT---AAG-TAGC-AA-A-TCCA---ATG-TAGATTTTACAA--TTAC--------------ATA--------ATTTTCATAG-----------TA-C-TTA-----TCAAT--AA-TGAAATGTTTTCTAA-GTT-AACTTTATTTAC--T-----ACCCAT
gi|23 : AAG-AAGC-AA-A-TCCA---GTA-TAGATCTCATAC--TTA------CATGCGGG-GTAGATTACACGACTTCAAAGTACAATTATTATA-C-TTA-----TCAAT--AA-TGAAATATTTTCTAAC
gi|24 : AATAACA--AC----T-GA-------------T--------TGTGACGTCATGTTAC---TAATTGT--G-A---CCTT-AC-ATTTTGTC-ATT--GCTTT----------ACG--TCCTTTGAAATTT---GAGAT-------------C-ATCATGAT--CT------AAAACCAAA
gi|25 : G-TACCA-TGTGT-A-T-GT-------TTTTATT-ACATTTT-CAACCTC-AAAATACT-G---AAATT-A--TCCATT-GA------------------------ATAA--AAAT-T-T-ATA-TTTT
gi|26 : -ACTT-GTGAGAC----TGAA--TTTTTT-CA-TATT-TTCA---CCAATG-CT---TCG---A-TT-TTG-TGAAAA-TAT----AAAAAA-AAc
gi|3 : AATCGCATGC-TGATTAGGAAACTTTC---TTAC-GGGGGCGTTT-GA-GGCGC-AT-A-C-----------------C----AATGCACCCTAAA-----ATCCCAA---------C--A---------A-ATGCAATATGTAT-ATTTA---TTATACATATTAAAC-AATTTTTTCCA-C--CC-GCA-TA-TTG-TT-ATA-TTG-CAAAGT-------TAC---------C--GGGAC-TA-TTAAAGATTT-CAG-C-CCATAC---------CTA-T--AG-AA
gi|3 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaCT-A---TTAA-A-GAT--------TTCAGCCCA-TACC-TAT-AGAACCA-TA-AT-TA-C--T-GTGTTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-CATTA-TATGT-A-C-AT-------TT--ATT-ACA-TTT-CAAAAGT-AAAATACT-GT--A-TTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACG--A-------TT-GAAA-AA-TAAC-----------TA-GTG-AAAAT-ACA--AC----T-GATCGTGAAGG----T--------T-------------AC---TGATTGT--G-A---TATT-AT-GTGTTG-C-ATA--GCTTT---------TAT----------------------------------------TCATGTT--CTAAATTTAAAATCAAAGAAAATG-A--AT--A-AATA-AAA-AAGTC--AATG---CTTT--TT--AG--TTGGA-ATTCG-AA-T-TAT-ATTTC-ACTT-ATAAGAT----AGGA--TTTT-A-AAATATT-TCCA---TTCGTGTTT---TCG---T-AC-TCG-TGAAAA-TA-TG--AAAANN-NNNNNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNN-NN---NNNNN-ATAAGA--G-A----TTTTTAT-ATAACTATCATGAAA--TACAGAAG-TTTTGAC-AGT-CCTATTACTAAAGCTAAACGTTTA-----AAATTAAG---A-CAATTTTAAAG-TAGC--A-A-TCCA---GTA-TAGATCTTGCAA--TTAC-----AATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT--AA-CAAAATATTTTCTAACATT-A--CTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACA-----------------AAAAAGCAACAATTAA--TTAATT---ACCCA-A-TTA-CATCAA-TATCAATGTATATGAATACATGTA-TTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGATAAACAATCA-----------------------CTCAATTA-GTTGACTTGA-TGAG--ACAAT-ATCGTccataattactgtgttccaaatatacggtcatttgaatggaaaagaacgcattatatgtacatttattacatttcaaaagtaaaatactgtatttatccattgaataaaaatgatatttttacgattgaaaaataactagtgaaaatacaactgatcgtgaaggttactgattgtgatattatgtgttgcatagcttttattcatgttctaaatttaaaatcaaagaaaatgaataaataaaaaagtcaatgctttttagttggaattcgaattatatttcacttataagataggattttaaaatatttccattcgtgttttcgtactcgtgaaaatatgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagatttttatataactatcatgaaatacagaagttttgacagtcctattactaaagctaaacgtttaaaattaagacaattttaaagtagcaatccagtatagatcttgcaattacaatgcgggttagacttcatagtacatgtactaatcaataacaaaatattttctaacattacttatttactacatatgcaatatgacatagggtatacaaaacgataaatgttcacaaaaaagcaacaattaattaattacccaattacatcaatatcaatgtatatgaatacatgtattttgacattgtatactcatttacacatgtataatgataaacaatcactcaattagttgacttgatgagacaatatcgtc
gi|4 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaaatcgcatgctgattaggaaactttcttacgggggcgtttgaggcgcataccaatgcaccctaaaatcccaacaaatgcaatatgtatatttattatacatattaaacaattttttccacccgcatattgttatattgcaaagttaccgggaAATCGCA-GT-TGATAGGATCACTTTT---TTAC-GGGG-CGTTTTGA-GGTG-----A-C-----------------C----AA----------------ATCCCAA---------C--A---------TTATACAATATGCAT-ATTTA---TTATACATATTAAAC-AATTATCT-CA-C--CC-CCA-CA-TTG-TTAAGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGA-TT-CAG-C-CTATAC---------CTATT--AGAAAATTCATCT-CTTTTTTA-A--ATATTTTATTTTTATCAAA-CACC-TTT-ATAA--A--A-AT-GG-CA-G-GTGCTC-C--AAAT-ATG-C-G-G-T-CATTTGCA-T-G-GAAAAG-AACGTTATTA-TATGT-A-C-AT-------TT--ATTAACATTTT-CAACAGT--AAATACT-GC--ACTTT-A--TCCAT---A------------------------TTAA--AAA--T-T-ATA-TTTTT-ACT--G-------TT-G-AA-AA-TAAC-----------TA-GTGAAAAATGACAC-AT----T-GA----------------------T-------------ACTGATGATTGT--C-A---TTTT-AT-GTTTTG-C-ATA--GC-TT---------TATA--TCTT-------TT---GAGAT-------------C-ATCAT-TT--CTA-----AAATTCAAAGAAAATGTA--A---A-AATAG-AA-AATTC---ATG---C-TT--TT--TATTTTGAA-TATCA-AA-T-T-T-ATTTCAACTTAGTGAGCA----AGGA--TTTTAA-AAATTAT-TTCT---CTCGTG-CT---TCG---T-TCTTCGTTGAAAA-TA-TG--AAAAAACAAAACCTGT-CTCACTCGTGTAAAA-AAATTC-AAAATCC-A-ACTACATGTT-ACAAAAGCATCGAA---GT-CTC-TATT-TATAT-ATAGAG--ATATTTTTTTTTTT-ATAATTATCATGAAA--TACAGAAGTTGTTGAC-AGTCCCTATTGCTAAAGCTG-------------AATTTAAG---G-CAATTTT--AGCTAGCAAA-A-TCCA---GTA-TCGATCTTACAA--TTA------CATGCGGG-ATA--------GACTCCATAG-----------TA-C-TTT-----T-AAT--A---------------AACGTT-AACTTTA-TTACT-T-----A-CCATGTCATT---TGAC----AGGGTAT-ATAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT------AATT---AGCCA-A-TTA-TAT----TATCAACGTATATGG-------T-----------------TAC-CATG-TACACATGTATAATGATTAAC-ATCA-----------------------CTCGATTGCGTTGAC-TGATTGAG--ACATT-ATCGTc
gi|5 : acgacatattttcattaaaaccaagtaagcgactatataaatcgctttgtagcgttagtttgataacaAATCGCATTTGTGATAGGGAAACTTTT--ATTAC-GGG--CGTTTTGA-GGTGC-AT-A-C-----------------T----AA----------------ATCCCAA---------C--A---------C-ATACGATATGCAT-ATTTA---T-ATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-TAGTTTT-TAAAGA-------TAC---------C--GGGGC-TA-TCAAAGATTT-CAGGC-CTATAC---------CTA-T--AG-AAATCCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATTTGTGCTC-C--AAAT-ATA-CCA-G-T-CATTTGAA-T-GCGAAAAG-AACG-TATTA-TATGT-A-CCAT-------TT--ATT-ACATTTT-CAACAGTTAAAATACTTGTT-ATTTC-A--TCCATT-GA------------------------ATAA--AAA--TTG-ATA-TTTTT-ACTTTA-------TTTG-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TG-TTGT--C-A---TTTTTAT-GTTTTG-C-CAA--GCCTT---------TCTA--TC---------TT---GAGAT-------------C-ATCATGTTTTCCA-----AAAATCAAAGAAAATGTA--A---A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-C-ATTTC-ACTT-ATGAGAC----CAGG--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAATTATTG--AAAAAA-AAAACCTG--CTCACTCGTG--AAA-TAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TGAAT-ATAGAG--G-ATTTTTTTTTAT-AAAGTTATCATGAAATTTACAGAAGCTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---GCCAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TAT-TCTTACAAATTTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTTAAACTTT-TTTACTAT-----ACCCATG-CATAA--TGAC-ATTTGGGTAT-ACAA-AA-GTTTAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTATTATTAA-TATCAACGTATATGA-------TA--TTTG-ACATTG-CATACTCATGTTACACATGTATAATGATAAACAATCA-----------------------CTCGATTG-GTTGACT--A-TGAGGTACAATCATCGT
gi|6 : TGT-TGAT-GGGAAACTTT---ATTAC-GGAG-CGTT--GAAGGTGC-AT-ATC-----------------C----AA----------------ATCC-AA---------C--A---------T-AT-CAA-ATGCA--ATTTA---TTATACATAT-AAAC-AATTCTCT-TA-C--CC-AGA-CA-TTG-TT-A-ATTTGGCAAAGACACGTAATAC---------C--GGGGC-TA-TTCAAGATT--CAG-C--TATAC---------CTA-T--AG-AAATTCATCT-C---TTTCTA-GAT--------TTTATCAA--CACT-TTT-ATAA--A-TA-AT-GAACAT--GTGT---C--AAAT-ATA---G-G-T-CATT-GAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-A-ATTTT---ACAGT-AAA-TACT-GT--ATTTT----TCCATTTGA------------------------ATAA--AA---T-G-GTAATTTTT-ACTG-A-------TT-G-AA-AAATAAC-----------TA-GT--AAAATGACA--AC------GA-------------T--------T-------------A----TGATTGT--C-A---TTTT-AT-GTTTTG-CCATA--GATTT---------TATT--TG---------TT---GAGAT---------------ATCATGTT--T-------AAAACCAAG--AAATGTA--AT--A-AATAGAAATAATTC--AATG---C-TT--TTTTAG--TTGGAGTATC--AA-T-T-T-GTT-C-ACGT-ATGAGAC----AGGA--TTT--A-AAATATT-T-CTAGGCTCGTG-CT---TCG---A-TC-TCG--GAACA-AAT-----GAAAA-AAAACCTGT-CTCGCTCGTA--AAA-TATTTCAAAA-TCC-A-ACTACATG-T-CA-AAAGCATCGAA--TGTC-TC-TAAGTTATAT-ATGGAG----ATTTTTATTT-T-ATAATTCT-ATGAAA-T-ACAGAAGTTTT-GAC-ATTCCCTATTACTAAAGCTG-------A-----AATT-AAG---G-CAATTTTAAAG-TAGC-AA-AATCCA---GTA-TTAATCTTACAA--TTAA------ATG-GGG-ATA--------GACTTCATAG-----------TT-A-TTT-----TCAAT--AA-CGAAATATTTTC------T-AACTTTA-TTACTAGGGAGAGCAGATG-CATTA--TGACGA-TAAGGTAT-ACGGTAACG
gi|7 : tcttttcattaaaccagtatgcgaacttgataatatgctttgtacgtaggtttggataacaaatgc-AATTCTCT-CACC--CC-CCA-CA-TTG-TT-AGGTTTT-CAAAGA-------TAC---------C---GGGC-TA-TCAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACCTTTT-ATAA--A-TA-AT-GA-CA-T-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTC-T--TCCATT-GA------------------------ATAA--AAA--T-G-GTA-TTTTT---------------------------AC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGA-----------------------TCG-C-ATA--GCTTT---------TCTA--TCTTT------TT---G-GAT-------------C-ATCATGTT--CT------AAAATCAAA-AAAATGTA--AT--A-AATAG-AA-AATGC--AATG---C-TT--TT--TG--TTGGA-TATCA-AA-T-T----TTTC-ACTT-ATGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TT-AAA-TATTG---------AAANNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNA-TA---TACAT-GTAGAGATA-ATCTTTTTT--T-ATAATTATCATGAAA--TACAGAAG-TTTTGAC-AGTCCCTATTACTAAGGCTG-------A-----AA-TTAAG---G-CAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TATATCTTACAA--TTA------CATGCggaacgtttcgacgatagacatt
gi|8 : AATCGCATGT-TGAT--GGAAACTTT---ATTAC-AGGG-CGTTTTGA-G-CGC-ATGA-C-----------------C----AATGCACCCTATAAAGAGGTCCCAA---------CCAA---------T-ATGCA-TATGTAT-ATTTA---TTATACATAT-AAAC-AATTCTCT-CA-C--CC-CCA-TA-TTGGTT-ATATTTG-CAAAGT-------TAC---------C--GGG-C-TACTTAAAGATTT-CAG-CTCCATAC---------CTA-T--AG-AAATTCATCT-C---TTT---------------TTTA---AA-CACC-TTTTATAA--AATAGAT-TA-CTTT-GTGTTC-C--AAATTATA-C-G-G-T-CATTTGAAATAG-GAAAAG-A-CG-CATTA--ATGT-AAC-AT-------TT--ATT-ACATTTT-CAATAGT-AAAATACT-GT--ATTTT----TTCATT-GA------------------------ATAA--AAA--T-T-ATA-TTTTT-ACT--A-------TT-G-AACAA-TAAC-----------TA-GTG-AAAAT-ACATCAC----TGGA-------------TTGTGAAGGT-------------AC---TGATTGTGAA-A---TATT-ATGGTTTTG-C-ATA--GCTTT---------AATA--TCTT-------TT---GAGA
gi|9 : gaacatattttcattaaaccaaataagcgaaagtcgctttgtacgtcattttgacaacGAAACTTTT--ATTAC-GGGG-CG--TTGA-GGTGCAAT-A-C-----------------C----AA----------------ATTCCAA---------C------------T-AT--AATATACAT-AT------------AAATT--AC-AATTCTCT-CA-C--CCGCCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GAG-------TAAAGATTT-CAG-C-CTATACCTATATATACTA-T--AG-AAATTCATCT-C---TTTA-A-GTAA-------TTTATTAAA-CACC-CTT-ATAG--A-TA-AT-GA-CA-T-GTGCTC-CAAAAAT-ATA-C-GCG-T-ATTTTGAC-T-G-GAAAAG-AACG-c
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): ACGACATCTTTTCATTAAATCAATTAAGCGACTTGATAAAGTCGCTTTGT
Alignments
lowQualScore : 1111 1 7777777777777777777777777777777777777777 2222222222222222222222 11111111 111111111 111111111 222222222222222 1111 1111111 222222222222222222222222 11 11111111111 55555555555555555555555555555555555555555 1111 55555555555555555555555555 111111111111111 1111111 11111 111111 22222 1 222 1111 1 222 1 2222222222222 3333333 11111111 11111111111 22222 1 2222222222 555555555555555555 333333 333 33333333333 111 77777777777777777777777 11 11
lowQualScore : 5 8 4 7777 4 4 0 4 0 4 8 8 2222222222222222222222222222222222222222 2 8888888888888888888888 4 9 1 4 777 0 3 4 4 4 55 4 4 4 4 4 4 4 44444444 666666666 55 4 4 4 8 4 4 666666666 8 55 4 4 777 111111111111111 44 4 8 8 55 8 4 4 4 8888 4 66 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 0000000 33 5 2 44 2 66 9999 5 555555555555555555555555 33 22 666 2 2 9999999999 2 2 2 2 33333333333 3 3 2 66 6666 2 66666666666666666666666666666666666666666 2222 555 2 2 5 2 2 33 2 00000000000000000000000000 555 777777777777777 33 8888888 66 22 33 33 2 99 2 33 33333 44 44 44 0 3 555 3 3 3 3 2 2 6666 44 8 3 0 3 555 6 555 444444 3 3 3 22222 4 1 4 66 55 1 5 5 0 5 5 5 888 00 5 555 5 7777 5 2 5 0 333 1 6 5 5555555555555 6 3 88888 3 3 3 3 3 666 3 55 2222222 4 44444444 99999999999 4 8 00000 55 4 44 4 2 4444444444 5 777 777 5 5 555555555555555555 222222 111 8 8 8 3 8 0 11111111111 8 99 0 111 8 0 44444444444444444444444 11 11 8 11 8
lowQualScore : . . . .... . . . . . . . . ........................................ . ...................... . . . . ... . . . . . .. . . . . . . . ........ ......... .. . . . . . . ......... . .. . . ... ............... .. . . . .. . . . . .... . .. . . . . . . . . . . . . . . . ....... .. . . .. . .. .... . ........................ .. .. ... . . .......... . . . . ........... . . . .. .... . ......................................... .... ... . . . . . .. . .......................... ... ............... .. ....... .. .. .. .. . .. . .. ..... .. .. .. . . ... . . . . . . .... .. . . . . ... . ... ...... . . . ..... . . . .. .. . . . . . . . ... .. . ... . .... . . . . ... . . . ............. . . ..... . . . . . ... . .. ....... . ........ ........... . . ..... .. . .. . . .......... . ... ... . . .................. ...... ... . . . . . . ........... . .. . ... . . ....................... .. .. . .. .
lowQualScore : 7 7 5 0000 4 4 0 4 7 4 9 9 7777777777777777777777777777777777777777 9 1111111111111111111111 4 2 9 4 888 8 2 4 0 0 55 0 0 0 0 0 1 0 22222222 000000000 55 1 0 0 0 0 0 000000000 0 55 0 0 000 666666666666666 66 0 0 0 55 0 0 0 4 7777 4 11 4 4 4 4 4 4 0 0 6 6 3 6 6 6 6 0000000 99 7 9 11 9 88 5555 7 777777777777777777777777 77 77 444 7 9 9999999999 9 9 9 9 66666666666 1 1 3 88 1111 9 77777777777777777777777777777777777777777 7777 000 0 9 7 9 9 99 6 33333333333333333333333333 000 777777777777777 99 1111111 44 44 99 99 9 44 9 99 88888 22 22 22 5 1 111 1 1 1 1 9 9 5555 22 2 1 5 1 444 2 444 222222 3 3 3 99999 0 7 4 11 44 9 0 0 9 7 7 7 777 66 7 777 7 6666 0 1 7 1 999 2 5 0 9999999999999 6 4 66666 2 6 6 6 6 444 6 00 3333333 0 55555555 00000000000 0 0 00000 55 0 44 4 8 8888888888 0 222 111 7 7 888888888888888888 555555 444 0 0 0 8 0 8 44444444444 0 44 8 666 8 8 00000000000000000000000 22 66 0 00 0
consensus : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N-A---TNTT-AT-GTTTTG-C-ATA--GCTTT---------TATA--TC---------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
Reference ( family-1056 ) : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N-A---TNTT-AT-GTTTTG-C-ATA--GCTTT---------TATA--TC---------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|1 : AATCGCATGT-GAATAGG-AAACTTT---ATTAC-GGGG-CGTTTTGA-GGCGC-AT-AAC-----------------C----AATGC-------------ACCCTAAAAGTCCAACC--A---------T-ATGCT-TATGTAT--TTTA---TTATACATATTAAACTAATTCTCT-CA-C--CC-C-A-TA-TT---T-ATATTTG-CAAAGT-------T-C---------C--GGGGCCTA-TTAAAGATCTGCAG-C-CCATAC---------CTAAT--AG-AA-TTCATCTGC---TTTA-----TA----------A--AAA-CACT-TTT-ATAA--AATA-AT-TA-CTTT-GT---T-C--AAAT-ATAAC-G-G-TTCATTAGAA-T-G-GAAAAG-AACG-CATAA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAATAGC-AAAA-ACT--T--ATTTT-AA-TCCATT-GA------------------------ATAA--AAAA-T-G-AAT-TTTTT-ACT--A-------TG-A-AG-AA-TAAC-----------TAAGTA-AAAATAACA--AC----T-GA-------------T--------TGTGAAGTT-----AC---TGTTGGT--G-A---TATT-AT-GTTTTG-C-ATA--GCTTTA--------TATACTTT---------TT---GAGAC-------------C-TTCATGTT--CT------AAAACCAAAGAAAATTTA--AT--A-AATTAAAA-TAGTC--AATG---CTTT--TT--AG--TT-GA-TATCG-AATT-T-T-ATTTC-ACTT-ATAAGAT----AGGA--CTTTTA-AAATATT-TTCT---TCCGTG-CT---TCG---T-AC-TAG-TGAAAA-TA-TGAAAAAAAA-AAAAACTGT-CTCACTCGTG--AAT-AAATTCAAAAATCC-ACACTACGTG-TGAC-AAAGCATTGAATCTGTCCTC-TA---TTTATAATAAAG--G-A---TTTTTTATAATAACT-TCATGAA---TACAGAAG--TTTGACAAGTCCCTATTACTAAAGCTA-------ACGTTTAAATTAAG---A-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGAACTTACAA--TTA------CATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT---A-CAAAATATTTTCT-ACATT-AACTTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACAAATGATAAATGTTCACAAAAAAGCAACAATT-AATTAAATT---AGCCACA-TTA-CATTAA-TATCAATGTATATGA-------TATTTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGAT-AACAATCACCATGTATAATGATAAACAATCACTCAATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|10 : acatcattttcaattaaaaccaaaataatggacttgaaaaagtcgctttgtacgtcgtttttgacaaca-------TT--ATT-ACATTTT-CAACAGT----------GT--ATTTT-A--TCCATT-GAATAAAACCATTTTCACGAGTGAAAATAACAAAA--T-G-TTA-TTTTC-ACT--A-------GT-G-AA-AA-TAAC-----------AA-GTA-ATTGTGACG--TCATGTT-GC-------------T--------C-------------AG---TGATTGT--A-A---CGTT-AT-GTTTTG-T-ATA--GCTTA---------TACG--TCC--------TT---GAGATTGAAATACATGTAC-ATCATGTT--CTA-----AAA--CAAAGTAAATGTA--AT--A-AACAGAAA---TGC--AATG-----TTAATT--AG--TTGTA-TATGG-AA-T-T-T-ATTTC-ACTT-GTGGGAC----AGAA--TTTTTA-AAATA-T-TTCA---CTCGTG-CT---T
gi|11 : TGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------GT--ATT-ACATTTT-CAACAGT-GAAATACT-GT--ATTTT-A--TCCATT-GA------------------------AT----AAA--T---ATA-TTTTT-ACT--A-------TC-G-AA-AA-TAAC-----------TA-GTG-AAAGTAACA--AC----T-GATTGTGACATCATGT--------T-------------AC---CGATTGT--G-A---CATT-AT-GTTTTG-C-ATA--GC-TT---------TATA--TCTTTTGAGATTT---GAGAT-------------C-ACCATGTT--CT------AAAACCATAGTAAATGTA--AT--A-AATAG-AA-AATTC--AATGGGTT-TT--TT--AC--TTGGA-TATGG-AA-T-T-T-ATTTC-ACTT-
gi|12 : T--ATT-ACATTTT-CG-CAGT-GAA-TGCT-GTTTATTTT-AATTCCATTTGA------------------------ATAA--AAAAGT-G-ATA-TGTTT-ACT--A------------------------------------GTG-AAAATAAC---------T-GA-------------T--------T------------------TGATCGT--TTA---TGTT-ACAGTGTCG-C-TTG--GCTTT---------CTTC--CT---------TT---GAGAT-------------C-ACCATGGT---TA-----AAAG--AAAGAATATATACTATGAA-AATAACAC-AATTC--AATG---T-TT--TT---G--TT-----ATGGTAA-TGT-T-ATTTC-ACTT-GTGTGAC----AGAA--TTTTAATGAATATT-TTTT---CTGGTG-CTTTCTTGCACA-TC--CG-TG-AAA-TATacgtcacttatgagaccgg
gi|13 : T-------TT--ATT-ACATTTT-CAACAGT-GGAATACT-GT--ACTTT-A--TCCATT-G------------------------------------------A-TTTTC-ACT--A-------GT-G-AA-AA-TAACAATATTCACTATA-TTG-AAAATAACA--CC----C-GA-------------T--------T-------------G----TGA-CGT--C-ATATTGTT-AT-GTTTTG-T-ATA--GCTGT------------------------------------------------------ACGTC--C---------AACCAAAGAAAATGTN--NN--N-NNNNNNNN-NNNNN--NNNN---N-NN--NN--NN--NNNNN-NNNNN-NN-N-N-N-NNNNN-NNNN-NNNNNNNNNCTAGGA--TTGT---AAATATT-TTCA---CTCGTATTT---TCG---C-AC-TCA-TGAAAA-TAT
gi|14 : A------------------------ACAA--AAG--T-GTAAA-TTTTTCACT--AAGTGTAGTT-G-AA-AA-TATA-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-----------------------GT--A-A---CGTT-AT-ATTTTG-T-ATATAGCTTTGTCCTTTGATAT---TT---------TT---AAGAT-------------C-ATCATGTC--CTA-----AAAGC-AAAGAAAATGTA--AT--G-AATAGAAA-ATTTC--A
gi|15 : aaatactgccaattatcacgtaaatatgaattaaaaatagtactaacaatattagtattttcactggttgaaaagacccaaaaaatAACTATCATGAAA-T-ACAGACGTTTTATA--AGTCCCTATTACTAACGCTA-------A-----A------------CG--TTTAAAG-TAGC-AC-A-TCTA---GTA-TAGATTTTACAA--TTACATGTACATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTA-----TGAAA--AA-CGAAATATTCAGTAACGTT-AACTTTATTTACTAT-------CCATG-CATTT--TGAC-A-TAGGGCAT-ACAA-ATCGTTAAATTTTCTC------------------A------AACAATC-AC-TCGATTtg
gi|16 : a-GAAACGCAACA-TACTAACACGT-A-A-ATAAACTAATT--ATT-ACATTTT-CAAGAGT-AAAATACT-TT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-A-ACA-ATCTC-ATT--A-------TT-G-AA-AA-TAAC-----------ggttgacttgatgagacaatatc
gi|17 : agggtgaT--CTA-----AAA-CCAAG--AAATATA--AT--ATAATA--AA-AATTC--AATG-----TT--TC--AG--CTTGA-TATGT-AA-T-T-T-CATTC-ACT--GTGAGAC----AGGA--TT------AACA-----CT---C--------------------------TGAAAA--------AAAAAA-AAATCCTGT-----TTCGAG--AAA-TATTCC---AATCC-A-Aaaatttcacaacaaattgtgacgtcacgctaaaatagaaaagttattgtttttagttgggtat
gi|18 : catagatatcacactttttcggtagctactgtctgCCAAAGAAAATGTA--AT--G-AATAG-AA-AATTCTAAAT----T-TT--TT--AG--TTGGA-TATGG-AA-T-T-T-CTTTG-TATT-GTGAGAG----AGAA--TTTTAA-AAATGTT-TT-T---CACA-----------------C-TCA-TAAAAA-TAT----AAAAAA-AAATCTTGT-CTCACTCGTG--AAA-TA
gi|19 : TTAAAG-TAGT-AAGA-TCCATGCATA-TAGATCTT-CAA--TTA---------GCGGG-ATA--------GACTTCACAG-----------TAGC-TTT-----TCAATTGAACCGAAAT-TTTTCTAA-GTC-AACTTTA-TTAC--T-----ACCCATG-CATTAATTGAC-A-TA
gi|2 : ATCGCATGT-TGATAGG-AAACTTTTTTATTAG-CGGG-CGTTT-GA-GGTGC-ATGA-C-----------------C----AA----------------ATCC-AA---------C--A---------T-ATACAATATGCAT-ATTTACCTTCATACATATTAA-C-AATTATCT-CA-CACCC-CCAACAATTG-TT-AGATTTG-CAAAGA-------TACGTTAACTATCAAGGGGC-TA-TTCAATATTTTCAG-C-TTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-AAGATA-------TTTATCAAAACACC-TTTTATAA--A-TA-ATCGT-CAAT-GTGCTCGC--AAAT-ATA-C-G-GGT-CATTTGAA-T-G--AAAAG-AACG-TATTT-TATGTTA-C-AT-------TT--ATTCACATTTTTCAACAGT-AAAATACT-GT--ATTTTTA--TC-ATT-GA------------------------ATAA--AAAATT-G-ATA-TTTT--ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTA-AAAATGACG--AA----T-GA-------------T--------T-------------AC---TGATTGTTCA-A---TTAT-AT-GTTTTG-C-ATA--GC-TT---------TATA--TC---------TTTTCGAGAG-------------CAATCATGTT--C-A-----AAA--TAAAG-AAATGTA--AT--A-AAAAGAAA-A--TT--ACTG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-TAATTTC-ACTT-ATGAGAC----AGGATTTTTTAA-ATATATTATTCT---CTCGTG-CT---TCG---ATTC-TCG-TGATAA-TA-TG--AACAAA-AA---CTGTCCTCACTCGTA--AAATAAATTC-AAAATCCGA-ACT-CTTG-T-AC-AAAGTATCAAT--TGTCCTCGTATT-TATAT-ATGGAG--A-GTTTTTTTTT-T-ATAATTATCATGAAA-TATCAGAAGTTTT--AC-AGTCCCTATTACTAAAGCTG-------A-----AATTAAAATGCG-CAATTTT-AAG-TAGC-AA-T-CCCA---GTATTAGATCTTAC-A--TTA------CATGCGGGAATA--------GACTTCATAG-----------TA-T-TTT-----TCAAT--TA-AGAAATATTTTCCAAC----ACCTTTA-TTACTA------ACCCATG-TATCA--TGAC-A-TAGGGTATCACAA-AACGTTAAATTTTCAC-------------------AAAAGCAAC-ATT-G----AATTATTAGCCA-ATTTA-TATTGATTATC--CGTATATGA-------TA-TTTTGCGCATTGCCATACTCAAGT---ACATGTATAATGATTAACAATCA------------------------TCGATT--GTTGACTTGA-TGGG--ACAAT-ATCGT
gi|20 : gaacatctttcatttaaaaccaagtaagcaagacttgataaaatgtttgttacgtagttttgataacaacgTTTT--ATTACAGGGG-CGTTT-GA-GGTGC-AT-A-CAATGCAGTGAATGCACCCTAAAAA----------------ATCCCAA---------C--AATTCACGAAT-ATCCAATATGCGTGATTTA---TTATACATc
gi|21 : tacgtttttctgatgactcgcaTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTT-CAAA---------------------------------TTAAAGATTT-CAG-C-CTATAC---------CTA-TGTAG-AAATTCATCT-C---TTTC-A-TACA-------TTTATTAAA-CACCTTTT-ATAA--A-TA-AT-G
gi|22 : ---G-CAATT---AAG-TAGC-AA-A-TCCA---ATG-TAGATTTTACAA--TTAC--------------ATA--------ATTTTCATAG-----------TA-C-TTA-----TCAAT--AA-TGAAATGTTTTCTAA-GTT-AACTTTATTTAC--T-----ACCCAT
gi|23 : AAG-AAGC-AA-A-TCCA---GTA-TAGATCTCATAC--TTA------CATGCGGG-GTAGATTACACGACTTCAAAGTACAATTATTATA-C-TTA-----TCAAT--AA-TGAAATATTTTCTAAC
gi|24 : AATAACA--AC----T-GA-------------T--------TGTGACGTCATGTTAC---TAATTGT--G-A---CCTT-AC-ATTTTGTC-ATT--GCTTT----------ACG--TCCTTTGAAATTT---GAGAT-------------C-ATCATGAT--CT------AAAACCAAA
gi|25 : G-TACCA-TGTGT-A-T-GT-------TTTTATT-ACATTTT-CAACCTC-AAAATACT-G---AAATT-A--TCCATT-GA------------------------ATAA--AAAT-T-T-ATA-TTTT
gi|26 : -ACTT-GTGAGAC----TGAA--TTTTTT-CA-TATT-TTCA---CCAATG-CT---TCG---A-TT-TTG-TGAAAA-TAT----AAAAAA-AAc
gi|3 : AATCGCATGC-TGATTAGGAAACTTTC---TTAC-GGGGGCGTTT-GA-GGCGC-AT-A-C-----------------C----AATGCACCCTAAA-----ATCCCAA---------C--A---------A-ATGCAATATGTAT-ATTTA---TTATACATATTAAAC-AATTTTTTCCA-C--CC-GCA-TA-TTG-TT-ATA-TTG-CAAAGT-------TAC---------C--GGGAC-TA-TTAAAGATTT-CAG-C-CCATAC---------CTA-T--AG-AA
gi|3 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaCT-A---TTAA-A-GAT--------TTCAGCCCA-TACC-TAT-AGAACCA-TA-AT-TA-C--T-GTGTTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-CATTA-TATGT-A-C-AT-------TT--ATT-ACA-TTT-CAAAAGT-AAAATACT-GT--A-TTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACG--A-------TT-GAAA-AA-TAAC-----------TA-GTG-AAAAT-ACA--AC----T-GATCGTGAAGG----T--------T-------------AC---TGATTGT--G-A---TATT-AT-GTGTTG-C-ATA--GCTTT---------TAT----------------------------------------TCATGTT--CTAAATTTAAAATCAAAGAAAATG-A--AT--A-AATA-AAA-AAGTC--AATG---CTTT--TT--AG--TTGGA-ATTCG-AA-T-TAT-ATTTC-ACTT-ATAAGAT----AGGA--TTTT-A-AAATATT-TCCA---TTCGTGTTT---TCG---T-AC-TCG-TGAAAA-TA-TG--AAAANN-NNNNNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNN-NN---NNNNN-ATAAGA--G-A----TTTTTAT-ATAACTATCATGAAA--TACAGAAG-TTTTGAC-AGT-CCTATTACTAAAGCTAAACGTTTA-----AAATTAAG---A-CAATTTTAAAG-TAGC--A-A-TCCA---GTA-TAGATCTTGCAA--TTAC-----AATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT--AA-CAAAATATTTTCTAACATT-A--CTTATTTACTAC-----A--TATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACA-----------------AAAAAGCAACAATTAA--TTAATT---ACCCA-A-TTA-CATCAA-TATCAATGTATATGAATACATGTA-TTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGATAAACAATCA-----------------------CTCAATTA-GTTGACTTGA-TGAG--ACAAT-ATCGTccataattactgtgttccaaatatacggtcatttgaatggaaaagaacgcattatatgtacatttattacatttcaaaagtaaaatactgtatttatccattgaataaaaatgatatttttacgattgaaaaataactagtgaaaatacaactgatcgtgaaggttactgattgtgatattatgtgttgcatagcttttattcatgttctaaatttaaaatcaaagaaaatgaataaataaaaaagtcaatgctttttagttggaattcgaattatatttcacttataagataggattttaaaatatttccattcgtgttttcgtactcgtgaaaatatgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagatttttatataactatcatgaaatacagaagttttgacagtcctattactaaagctaaacgtttaaaattaagacaattttaaagtagcaatccagtatagatcttgcaattacaatgcgggttagacttcatagtacatgtactaatcaataacaaaatattttctaacattacttatttactacatatgcaatatgacatagggtatacaaaacgataaatgttcacaaaaaagcaacaattaattaattacccaattacatcaatatcaatgtatatgaatacatgtattttgacattgtatactcatttacacatgtataatgataaacaatcactcaattagttgacttgatgagacaatatcgtc
gi|4 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaaatcgcatgctgattaggaaactttcttacgggggcgtttgaggcgcataccaatgcaccctaaaatcccaacaaatgcaatatgtatatttattatacatattaaacaattttttccacccgcatattgttatattgcaaagttaccgggaAATCGCA-GT-TGATAGGATCACTTTT---TTAC-GGGG-CGTTTTGA-GGTG-----A-C-----------------C----AA----------------ATCCCAA---------C--A---------TTATACAATATGCAT-ATTTA---TTATACATATTAAAC-AATTATCT-CA-C--CC-CCA-CA-TTG-TTAAGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGA-TT-CAG-C-CTATAC---------CTATT--AGAAAATTCATCT-CTTTTTTA-A--ATATTTTATTTTTATCAAA-CACC-TTT-ATAA--A--A-AT-GG-CA-G-GTGCTC-C--AAAT-ATG-C-G-G-T-CATTTGCA-T-G-GAAAAG-AACGTTATTA-TATGT-A-C-AT-------TT--ATTAACATTTT-CAACAGT--AAATACT-GC--ACTTT-A--TCCAT---A------------------------TTAA--AAA--T-T-ATA-TTTTT-ACT--G-------TT-G-AA-AA-TAAC-----------TA-GTGAAAAATGACAC-AT----T-GA----------------------T-------------ACTGATGATTGT--C-A---TTTT-AT-GTTTTG-C-ATA--GC-TT---------TATA--TCTT-------TT---GAGAT-------------C-ATCAT-TT--CTA-----AAATTCAAAGAAAATGTA--A---A-AATAG-AA-AATTC---ATG---C-TT--TT--TATTTTGAA-TATCA-AA-T-T-T-ATTTCAACTTAGTGAGCA----AGGA--TTTTAA-AAATTAT-TTCT---CTCGTG-CT---TCG---T-TCTTCGTTGAAAA-TA-TG--AAAAAACAAAACCTGT-CTCACTCGTGTAAAA-AAATTC-AAAATCC-A-ACTACATGTT-ACAAAAGCATCGAA---GT-CTC-TATT-TATAT-ATAGAG--ATATTTTTTTTTTT-ATAATTATCATGAAA--TACAGAAGTTGTTGAC-AGTCCCTATTGCTAAAGCTG-------------AATTTAAG---G-CAATTTT--AGCTAGCAAA-A-TCCA---GTA-TCGATCTTACAA--TTA------CATGCGGG-ATA--------GACTCCATAG-----------TA-C-TTT-----T-AAT--A---------------AACGTT-AACTTTA-TTACT-T-----A-CCATGTCATT---TGAC----AGGGTAT-ATAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT------AATT---AGCCA-A-TTA-TAT----TATCAACGTATATGG-------T-----------------TAC-CATG-TACACATGTATAATGATTAAC-ATCA-----------------------CTCGATTGCGTTGAC-TGATTGAG--ACATT-ATCGTc
gi|5 : acgacatattttcattaaaaccaagtaagcgactatataaatcgctttgtagcgttagtttgataacaAATCGCATTTGTGATAGGGAAACTTTT--ATTAC-GGG--CGTTTTGA-GGTGC-AT-A-C-----------------T----AA----------------ATCCCAA---------C--A---------C-ATACGATATGCAT-ATTTA---T-ATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-TAGTTTT-TAAAGA-------TAC---------C--GGGGC-TA-TCAAAGATTT-CAGGC-CTATAC---------CTA-T--AG-AAATCCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATTTGTGCTC-C--AAAT-ATA-CCA-G-T-CATTTGAA-T-GCGAAAAG-AACG-TATTA-TATGT-A-CCAT-------TT--ATT-ACATTTT-CAACAGTTAAAATACTTGTT-ATTTC-A--TCCATT-GA------------------------ATAA--AAA--TTG-ATA-TTTTT-ACTTTA-------TTTG-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TG-TTGT--C-A---TTTTTAT-GTTTTG-C-CAA--GCCTT---------TCTA--TC---------TT---GAGAT-------------C-ATCATGTTTTCCA-----AAAATCAAAGAAAATGTA--A---A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCA-AA-T-T-C-ATTTC-ACTT-ATGAGAC----CAGG--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAATTATTG--AAAAAA-AAAACCTG--CTCACTCGTG--AAA-TAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TGAAT-ATAGAG--G-ATTTTTTTTTAT-AAAGTTATCATGAAATTTACAGAAGCTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---GCCAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TAT-TCTTACAAATTTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTTAAACTTT-TTTACTAT-----ACCCATG-CATAA--TGAC-ATTTGGGTAT-ACAA-AA-GTTTAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTATTATTAA-TATCAACGTATATGA-------TA--TTTG-ACATTG-CATACTCATGTTACACATGTATAATGATAAACAATCA-----------------------CTCGATTG-GTTGACT--A-TGAGGTACAATCATCGT
gi|6 : TGT-TGAT-GGGAAACTTT---ATTAC-GGAG-CGTT--GAAGGTGC-AT-ATC-----------------C----AA----------------ATCC-AA---------C--A---------T-AT-CAA-ATGCA--ATTTA---TTATACATAT-AAAC-AATTCTCT-TA-C--CC-AGA-CA-TTG-TT-A-ATTTGGCAAAGACACGTAATAC---------C--GGGGC-TA-TTCAAGATT--CAG-C--TATAC---------CTA-T--AG-AAATTCATCT-C---TTTCTA-GAT--------TTTATCAA--CACT-TTT-ATAA--A-TA-AT-GAACAT--GTGT---C--AAAT-ATA---G-G-T-CATT-GAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-A-ATTTT---ACAGT-AAA-TACT-GT--ATTTT----TCCATTTGA------------------------ATAA--AA---T-G-GTAATTTTT-ACTG-A-------TT-G-AA-AAATAAC-----------TA-GT--AAAATGACA--AC------GA-------------T--------T-------------A----TGATTGT--C-A---TTTT-AT-GTTTTG-CCATA--GATTT---------TATT--TG---------TT---GAGAT---------------ATCATGTT--T-------AAAACCAAG--AAATGTA--AT--A-AATAGAAATAATTC--AATG---C-TT--TTTTAG--TTGGAGTATC--AA-T-T-T-GTT-C-ACGT-ATGAGAC----AGGA--TTT--A-AAATATT-T-CTAGGCTCGTG-CT---TCG---A-TC-TCG--GAACA-AAT-----GAAAA-AAAACCTGT-CTCGCTCGTA--AAA-TATTTCAAAA-TCC-A-ACTACATG-T-CA-AAAGCATCGAA--TGTC-TC-TAAGTTATAT-ATGGAG----ATTTTTATTT-T-ATAATTCT-ATGAAA-T-ACAGAAGTTTT-GAC-ATTCCCTATTACTAAAGCTG-------A-----AATT-AAG---G-CAATTTTAAAG-TAGC-AA-AATCCA---GTA-TTAATCTTACAA--TTAA------ATG-GGG-ATA--------GACTTCATAG-----------TT-A-TTT-----TCAAT--AA-CGAAATATTTTC------T-AACTTTA-TTACTAGGGAGAGCAGATG-CATTA--TGACGA-TAAGGTAT-ACGGTAACG
gi|7 : tcttttcattaaaccagtatgcgaacttgataatatgctttgtacgtaggtttggataacaaatgc-AATTCTCT-CACC--CC-CCA-CA-TTG-TT-AGGTTTT-CAAAGA-------TAC---------C---GGGC-TA-TCAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATTAAA-CACCTTTT-ATAA--A-TA-AT-GA-CA-T-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTC-T--TCCATT-GA------------------------ATAA--AAA--T-G-GTA-TTTTT---------------------------AC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGA-----------------------TCG-C-ATA--GCTTT---------TCTA--TCTTT------TT---G-GAT-------------C-ATCATGTT--CT------AAAATCAAA-AAAATGTA--AT--A-AATAG-AA-AATGC--AATG---C-TT--TT--TG--TTGGA-TATCA-AA-T-T----TTTC-ACTT-ATGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TT-AAA-TATTG---------AAANNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNA-TA---TACAT-GTAGAGATA-ATCTTTTTT--T-ATAATTATCATGAAA--TACAGAAG-TTTTGAC-AGTCCCTATTACTAAGGCTG-------A-----AA-TTAAG---G-CAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TATATCTTACAA--TTA------CATGCggaacgtttcgacgatagacatt
gi|8 : AATCGCATGT-TGAT--GGAAACTTT---ATTAC-AGGG-CGTTTTGA-G-CGC-ATGA-C-----------------C----AATGCACCCTATAAAGAGGTCCCAA---------CCAA---------T-ATGCA-TATGTAT-ATTTA---TTATACATAT-AAAC-AATTCTCT-CA-C--CC-CCA-TA-TTGGTT-ATATTTG-CAAAGT-------TAC---------C--GGG-C-TACTTAAAGATTT-CAG-CTCCATAC---------CTA-T--AG-AAATTCATCT-C---TTT---------------TTTA---AA-CACC-TTTTATAA--AATAGAT-TA-CTTT-GTGTTC-C--AAATTATA-C-G-G-T-CATTTGAAATAG-GAAAAG-A-CG-CATTA--ATGT-AAC-AT-------TT--ATT-ACATTTT-CAATAGT-AAAATACT-GT--ATTTT----TTCATT-GA------------------------ATAA--AAA--T-T-ATA-TTTTT-ACT--A-------TT-G-AACAA-TAAC-----------TA-GTG-AAAAT-ACATCAC----TGGA-------------TTGTGAAGGT-------------AC---TGATTGTGAA-A---TATT-ATGGTTTTG-C-ATA--GCTTT---------AATA--TCTT-------TT---GAGA
gi|9 : gaacatattttcattaaaccaaataagcgaaagtcgctttgtacgtcattttgacaacGAAACTTTT--ATTAC-GGGG-CG--TTGA-GGTGCAAT-A-C-----------------C----AA----------------ATTCCAA---------C------------T-AT--AATATACAT-AT------------AAATT--AC-AATTCTCT-CA-C--CCGCCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GAG-------TAAAGATTT-CAG-C-CTATACCTATATATACTA-T--AG-AAATTCATCT-C---TTTA-A-GTAA-------TTTATTAAA-CACC-CTT-ATAG--A-TA-AT-GA-CA-T-GTGCTC-CAAAAAT-ATA-C-GCG-T-ATTTTGAC-T-G-GAAAAG-AACG-c
blockSeqs : G A G TTTA A G T A A G T AATGCAGTGAATGCACCCTAAAAA C CAATTCACGAA T A A G CCT T . C C AC G A A G A G G ACACGTAA GTTAACTAT AA G . C T G T CTATATATA T GT A . TTT AAATATTTTATT TC A T T CC A G C A ATTT G AA T . C C G . A A C C T A T A C AAACTAA TT C T TA T TT AAT T ATAAAACCATTTTCACGAGTGAAA CA AG GT A C AAGTGTAG T A C A AATATTCACTA . A G TC ATGT G TTGTGACATCATGTTAC TCA TAT G T A T C TA T TATATCTTTTGAGAT TTC TGAAATACATGTAC TT TAAATTT AC GT CT GA T GA T TA GGTT AA TT TT G GGT . G A A A A NNCT TT T T A AGG T TTC CACAT T T T TTG C T C TA TA N G . T . A T G AGT . ATA T A . TTT T A . AACGTTTA T A TGCG A C A G A TGC T AT CATGTAC A GATTACAC TACAATTATTA G A ACTAA TG C CG A T TAGGGAGAGC T AAT AT C T A ACTC ATT . T T T T ATACATGTAT C CC GTT T . GC TT T GT C
blockSeqs : . T A TA . . T . . G . CAATGCACCCTATAAAGAG C CCAA . C A . . T . . . . . . . . . G . A . . A . . . . . . . . . . . AAAGATA TT . T T . . . . . AAT . . . . . . . . . . . . . . . . . . . A . G . T TA T . . AT TG . . TTA . . . . . . . A C . . TTGTGACGTCATGTTAC GAA . A . G . . . T GTCCTTTGATATTT . CA . TA AC GT . . . AC . . CT . . . . GG . . . . . . . . A . . . T . ATT . . . TTG . T . . T A . . . . . N . TT . AT T T . TA T T . A A T GC A . . . . . . . CA . . . . . . . . CA . T TATAC . T GA . . . AATT A . . . C . TAT . T GT A . A TT . . .
blockSeqs : . A G TA . . T . . . . CAATGCACCCTAAA C CA . G A . . T . . . . . . . . . T . T . . G . . . . . . . . . . . CATACA GC . . . . . . . . TTT . . . . . . . . . . . . . . . . . . . . . G . . A . . . T G . . GA . . . . . . . A . . . TCGTGAAGGTTAC TT . G . . . . . T ACGTCCTTTGAAAT . C . TA GC GA . . . NN . . T . . . . GG . . . . . . . . A . . . . . CA . . . TG . N . . T A . . . . . T . TT . A T A . T T T . A T T G A . . . . . . . CC . . . . . . . . CG . T TAAC . A A . . . ATC . . . . T . TA . C TT T . G T . . .
blockSeqs : . A G TA . . T . . . . CAA C CA . A A . . T . . . . . . . . . G . A . . G . . . . . . . . . . . AAGATA TC . . . . . . . . AG . . . . . . . . . . . . . . . . . . . . . G . . A . . . . G . . A . . . . . . . A . . . TTGTGAAGGTAC A . G . . . . . T TCTATCTTT . C . TA AC GA . . . GA . . N . . . . NN . . . . . . . . A . . . . . AT . . . TG . A . . N N . . . . . T . . . G T . . T C T . A T T A A . . . . . . . C . . . . . . . . CG . T TACA . A A . . . G . . . . . . T . . GT A . . T . . .
blockSeqs : . . G C . . . . . . . CAA C CA . A A . . T . . . . . . . . . A . A . . G . . . . . . . . . . . CTAGAT TT . . . . . . . . AT . . . . . . . . . . . . . . . . . . . . . A . . A . . . . A . . A . . . . . . . A . . . TACTGA G . G . . . . . T TATATCTT . C . TA AT GA . . . GA . . T . . . . GT . . . . . . . . T . . . . . TA . . . TG . A . . A . . . . . . N . . . G T . . T T T . A T T G A . . . . . . . C . . . . . . . . G . . TAT . A A . . . .
blockSeqs : . . G T . . . . . . . TAA C CA . G A . . . . . . . . . . . . G . A . . G . . . . . . . . . . . AAGATA TC . . . . . . . . AT . . . . . . . . . . . . . . . . . . . . . A . . A . . . . G . . A . . . . . . . G . . . TCAG C . T . . . . . T AATATCTT . C . TA TT GA . . . GA . . C . . . . GG . . . . . . . . A . . . . . TT . . . T . A . . T . . . . . . . . . . . . . . T . . . A . . G A . . . . . . . C . . . . . . . . C . . TAC . A A . .
blockSeqs : . A . . . . . . . CAA . CA . . A . . . . . . . . . . . . T . T . . . . . . . . . . . . . . AAGTAA TT . . . . . . . . AT . . . . . . . . . . . . . . . . . . . . . A . . A . . . . T . . A . . . . . . . A . . . TTAC A . C . . . . . C TACGTCC . C . CA AT GA . . . GA . . C . . . . CA . . . . . . . . A . . . . . AT . . . T . N . . T . . . T . . . . . . G . . . . . . . . C . . . . . . . . G . . TAC . . .
blockSeqs : A . . . . . . . CAA . C . . . . . . . . . . . . . . G . A . . . . . . . . . . . . . . AAGAT TT . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . A . . A . . . . G . . A . . . . . . . G . . . TTAC G . A . . . . . T CTTCCT . C . T AC GA . . . G . . C . . . . CG . . . . . . . . A . . . . . AT . . . T . . . . N . . . . . . . . . A . . . . . . . . . . . TTA
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . A . . . . T . . A . . . . . . . A . . . TTAC G . T . . . . . T TATATC . C . A AT GA . . . G . . C . . . . CA . . . . . . . . . . . . . . AT . . . . . . . . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . A . . . . G . . A . . . . . . . G . . . TTG C . T . . . . . T TCTATC . . . T G G . . . A . . C . . . . CA . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . T . . . . G . . G . . . . . . . A . . . TTA C . T . . . . . . TATTTG . . . T C A . . . G . . . . . . . CA . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . A . . . . . . . . . . . TT C . A . . . . . . TAT . . . . . . . . . G . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CAA************************************* CA******************** AAGANA********* TC AT** A*** ** TTAC************************************* TATATCTT****************** TA***** C**** TG*** T** A************ ***** TAC******* ****************** ATC*** TAT******** *********************** T*
originalCons : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CATT-GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N-A---TNTT-AT-GTTTTG-C-ATA--GCTTT---------TATA--TC---------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATTG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAT-----ACCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
finalCons : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-CCAA-------------------------------------ATCCCAACA--------------------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CA-C--CC-CCA-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTAAGANA---------TTTATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CAT--GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTTA---TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GATTAC-------------------------------------TGATTGT--N-A---TNTT-AT-GTTTTG-C-ATA--GCTTTTATATCTT------------------TT---GAGAT-------------C-ATCATGTT--CTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATGC----TT--TT--AG--TTGGA-TATCG-AA-T-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TATG---AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAAT--GTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTGA------------AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTACTAC-------CCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATTATC---AATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGATAT--------TTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACT-GA-TGAG--ACAAT-ATCGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): ACGACATCTTTTCATTAAATCAATTAAGCGACTTGATAAAGTCGCTTTGT
Alignments
lowQualScore : 1111 1 7777777777777777777777777777777777777777 2222222222222222222222 11111111 111111111 111111111 222222222222222 1 11111 1111111 222222222222222222222222 11 11111111111 55555555555555555555555555555555555555555 11111111 222222222222222222222222222222222222222 111111111 1111111 11 11111 111111 1 222 1111 1 222 1 2222222222222 3333333 11111111 11111111111 22222 1 1111111 555555555555555555 333333 333 33333333333 111 77777777777777777777777 11 2 11
lowQualScore : 5 8 4 7777 4 4 0 4 0 4 8 8 2222222222222222222222222222222222222222 2 8888888888888888888888 4 9 1 4 777 0 3 4 4 55 4 4 4 4 4 4 4 4 44444444 666666666 55 9 4 4 8 4 4 666666666 8 55 4 4 777 777777777777777 4 22 4 4 2 55 8 4 4 4 33333 4 66 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 0000000 33 5 2 44 2 66 9999 5 555555555555555555555555 33 22 666 2 2 9999999999 2 2 2 2 33333333333 3 3 2 9999999999 44444444444444444444444444444444444444444 33333333 2 5 66 2 2 666666666666666666666666666666666666666 000000000 44 4444444 33 22 33 33 2 99 2 33 00000 44 77 44 3 555 3 3 6 2 2 6666 44 8 3 0 3 555 6 555 444444 3 3 3 3 777 4 88 4 66 55 1 5 5 0 5 5 5 888 44 5 555 5 7777 5 2 5 0 333 1 6 5 5555555555555 6 3 88888 3 3 3 3 3 666 3 55 2222222 4 44444444 99999999999 4 8 00000 55 4 44 4 2 66 4 4444444 5 777 777 5 5 555555555555555555 222222 111 8 8 8 3 8 0 11111111111 8 99 0 111 8 0 44444444444444444444444 11 4 8 11 8
lowQualScore : . . . .... . . . . . . . . ........................................ . ...................... . . . . ... . . . . .. . . . . . . . . ........ ......... .. . . . . . . ......... . .. . . ... ............... . .. . . . .. . . . . ..... . .. . . . . . . . . . . . . . . . ....... .. . . .. . .. .... . ........................ .. .. ... . . .......... . . . . ........... . . . .......... ......................................... ........ . . .. . . ....................................... ......... .. ....... .. .. .. .. . .. . .. ..... .. .. .. . ... . . . . . .... .. . . . . ... . ... ...... . . . . ... . .. . .. .. . . . . . . . ... .. . ... . .... . . . . ... . . . ............. . . ..... . . . . . ... . .. ....... . ........ ........... . . ..... .. . .. . . .. . ....... . ... ... . . .................. ...... ... . . . . . . ........... . .. . ... . . ....................... .. . . .. .
lowQualScore : 7 7 5 0000 4 4 0 4 7 4 9 9 7777777777777777777777777777777777777777 9 1111111111111111111111 4 2 9 4 888 8 2 4 0 55 0 0 0 0 0 0 1 0 22222222 000000000 55 1 0 0 0 0 0 000000000 0 55 0 4 888 333333333333333 0 11 0 0 0 55 0 0 0 4 44444 4 11 4 4 4 4 4 4 0 0 6 6 3 6 6 6 6 0000000 99 7 9 11 9 88 5555 7 777777777777777777777777 77 77 444 7 9 9999999999 9 9 9 9 66666666666 1 1 3 3333333333 99999999999999999999999999999999999999999 33333333 0 7 88 9 6 111111111111111111111111111111111111111 888888888 22 6666666 33 44 99 99 9 44 9 99 77777 22 33 22 1 111 1 1 2 9 9 5555 22 2 1 5 1 444 2 444 222222 3 3 3 3 111 0 44 4 11 44 9 0 0 9 7 7 7 777 66 7 777 7 6666 0 1 7 1 999 2 5 0 9999999999999 6 4 66666 2 6 6 6 6 444 6 00 3333333 0 55555555 00000000000 0 0 00000 55 0 44 4 8 11 4 4444444 0 222 111 7 7 888888888888888888 555555 444 0 0 0 8 0 8 44444444444 0 44 8 666 8 8 00000000000000000000000 22 0 0 00 0
consensus : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CAC--CC-CC-A-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTT-ATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CA-T--GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N-A---TNTTAT-GTTTTG--C-ATAGCTTT-T------ATATCT-------T-T-----T-G-------AGAT-------C-ATCATG--TTCTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AAT-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TA-TG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTAC--T-A-------CCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
Reference ( family-1056 ) : AATCGCATGT-TGATAGGGAAACTTTT--ATTAC-GGGG-CGTTTTGA-GGCGC-AT-A-C-----------------C----AA----------------ATCCCAA---------C--A---------T-ATGCAATATGCAT-ATTTA---TTATACATATTAAAC-AATTCTCT-CAC--CC-CC-A-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GANA-------TTT-ATCAAA-CACC-TTT-ATAA--A-TA-AT-GA-CA-T--GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGATTGT--N-A---TNTTAT-GTTTTG--C-ATAGCTTT-T------ATATCT-------T-T-----T-G-------AGAT-------C-ATCATG--TTCTA-----AAAACCAAAGAAAATGTA--AT--A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCG-AAT-T-T-ATTTC-ACTT-GTGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAA-TA-TG--AAAAAA-AAAACCTGT-CTCACTCGTG--AAA-NAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TATAT-ATAGAG--G-ATTTTTTTTTAT-ATAATTATCATGAAA-TTACAGAAGTTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---G-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGATCTTACAA--TTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTT-AACTTTATTTAC--T-A-------CCCATG-CATTA--TGAC-A-TAGGGTAT-ACAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTA-TATTAA-TATCAACGTATATGA-------TA-TTTTG-ACATTG-CATACTCATGTTACACATGTATAATGATNAACAATCA-----------------------CTCGATTG-GTTGAC-TGA-TGAG--ACAAT-ATCGT
gi|1 : AATCGCATGT-GAATAGG-AAACTTT---ATTAC-GGGG-CGTTTTGA-GGCGC-AT-AAC-----------------C----AATGC-------------ACCCTAAAAGTCCAACC--A---------T-ATGCT-TATGTAT--TTTA---TTATACATATTAAACTAATTCTCT-CAC--CC-C--A-TA-TT---T-ATATTTG-CAAAGT-------T-C---------C--GGGGCCTA-TTAAAGATCTGCAG-C-CCATAC---------CTAAT--AG-AA-TTCATCTGC---TTTA-T-AA----------------AAA-CACT-TTT-ATAA--AATA-AT-TA-C--T--TTGTTC----AAAT-ATAAC-G-G-TTCATTAGAA-T-G-GAAAAG-AACG-CATAA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAATAGC-AAAA-ACT--T--ATTTT-AA-TCCATT-GA------------------------ATAA--AAAA-T-G-AAT-TTTTT-ACT--A-------TG-A-AG-AA-TAAC-----------TAAGTA-AAAATAACA--AC----T-GA-------------T--------TGTGAAGTT-----AC---TGTTGGT--G-A---TATTAT-GTTTTG--C-ATAGCTTTAT------ATACTT-------T-T-----T-G-------AGAC-------C-TTCATG--TTCTA-----AAA-CCAAAGAAAATTTA--AT--A-AATTAAAA-TAGTC--AATG---C-TT--TTT-AG--TTG-A-TATCG-AAT-T-TTATTTC-ACTT-ATAAGAT----AGGA--CTTTTA-AAATATT-TTCT---TCCGTG-CT---TCG---T-AC-TAG-TGAAAA-TA-TGAAAAAAAA-AAAAACTGT-CTCACTCGTG--AAT-AAATTCAAAAATCC-ACACTACGTG-TGAC-AAAGCATTGAATCTGTCCTC-TA---TTTATAATAAAG--G-A---TTTTTTATAATAACT-TCATGAA---TACAGAAG--TTTGACAAGTCCCTATTACTAAAGCTA-------ACGTTTAAATTAAG---A-CAATTTTAAAG-TAGC-AA-A-TCCA---GTA-TAGAACTTACAA--TTA------CATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT---A-CAAAATATTTTCT-ACATT-AACTTTATTTAC--T-A-------CATATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACAAATGATAAATGTTCACAAAAAAGCAACAATT-AATTAAATT---AGCCACA-TTA-CATTAA-TATCAATGTATATGA-------TATTTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGAT-AACAATCACCATGTATAATGATAAACAATCACTCAATTG-GTTGACTTGA-TGAG--ACAAT-ATCGT
gi|10 : acatcattttcaattaaaaccaaaataatggacttgaaaaagtcgctttgtacgtcgtttttgacaaca-------TT--ATT-ACATTTT-CAACAGT----------GT--ATTTT-A--TCCATT-GAATAAAACCATTTTCACGAGTGAAAATAACAAAA--T-G-TTA-TTTTC-ACT--A-------GT-G-AA-AA-TAAC-----------AA-GTA-ATTGTGACG--TCATGTT-GC-------------T--------C-------------AG---TGATTGT--A-A---CGTTAT-GTTTTG--T-ATAGCTTA-T------ACGTCC-------T-TGAGATT-G-------AAATACATGTAC-ATCATG--TTCTA-----AAA--CAAAGTAAATGTA--AT--A-AACAGAAA---TGC--AATG-----TTAATT--AG--TTGTA-TATGG-AAT-T-T-ATTTC-ACTT-GTGGGAC----AGAA--TTTTTA-AAATA-T-TTCA---CTCGTG-CT---T
gi|11 : TGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------GT--ATT-ACATTTT-CAACAGT-GAAATACT-GT--ATTTT-A--TCCATT-GA------------------------AT----AAA--T---ATA-TTTTT-ACT--A-------TC-G-AA-AA-TAAC-----------TA-GTG-AAAGTAACA--AC----T-GATTGTGACATCATGT--------T-------------AC---CGATTGT--G-A---CATTAT-GTTTTG--C-ATAGC-TT-T------ATATCTTTTGAGAT-T-----T-G-------AGAT-------C-ACCATG--TTCT------AAAACCATAGTAAATGTA--AT--A-AATAG-AA-AATTC--AATGGGTT-TT--TT--AC--TTGGA-TATGG-AAT-T-T-ATTTC-ACTT-
gi|12 : T--ATT-ACATTTT-CG-CAGT-GAA-TGCT-GTTTATTTT-AATTCCATTTGA------------------------ATAA--AAAAGT-G-ATA-TGTTT-ACT--A------------------------------------GTG-AAAATAAC---------T-GA-------------T--------T------------------TGATCGT--TTA---TGTTACAGTGTCG--C-TTGGCTTT-C-------T-TCC-------T-T-----T-G-------AGAT-------C-ACCATG--GT-TA-----AAAG--AAAGAATATATACTATGAA-AATAACAC-AATTC--AATG---T-TT--TT---G--TT-----ATGGTAATGT-T-ATTTC-ACTT-GTGTGAC----AGAA--TTTTAATGAATATT-TTTT---CTGGTG-CTTTCTTGCACA-TC--CG-TG-AAA-TA-Tacgtcacttatgagaccgg
gi|13 : T-------TT--ATT-ACATTTT-CAACAGT-GGAATACT-GT--ACTTT-A--TCCATT-G------------------------------------------A-TTTTC-ACT--A-------GT-G-AA-AA-TAACAATATTCACTATA-TTG-AAAATAACA--CC----C-GA-------------T--------T-------------G----TGA-CGT--C-ATATTGTTAT-GTTTTG--T-ATAGCTGT-------------------------------------------------------ACG--TCC---------AACCAAAGAAAATGTN--NN--N-NNNNNNNN-NNNNN--NNNN---N-NN--NN--NN--NNNNN-NNNNN-NNN-N-N-NNNNN-NNNN-NNNNNNNNNCTAGGA--TTGT---AAATATT-TTCA---CTCGTATTT---TCG---C-AC-TCA-TGAAAA-TA-T
gi|14 : A------------------------ACAA--AAG--T-GTAAA-TTTTTCACT--AAGTGTAGTT-G-AA-AA-TATA-----------TA-GTG-AAAATAACA------------------------------------------------AC---TGATTGT--A-A---CGTTAT-ATTTTGTAT-ATAGCTTTGTCCTTTGATAT-T-------T-T-----T-A-------AGAT-------C-ATCATG--TCCTA-----AAAG-CAAAGAAAATGTA--AT--G-AATAGAAA-ATTTC--A
gi|15 : aaatactgccaattatcacgtaaatatgaattaaaaatagtactaacaatattagtattttcactggttgaaaagacccaaaaaatAACTATCATGAAA-T-ACAGACGTTTTATA--AGTCCCTATTACTAACGCTA-------A-----A------------CG--TTTAAAG-TAGC-AC-A-TCTA---GTA-TAGATTTTACAA--TTACATGTACATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTA-----TGAAA--AA-CGAAATATTCAGTAACGTT-AACTTTATTTAC--T-A-------TCCATG-CATTT--TGAC-A-TAGGGCAT-ACAA-ATCGTTAAATTTTCTC------------------A------AACAATC-AC-TCGATTtg
gi|16 : a-GAAACGCAACA-TACTAACACGT-A-A-ATAAACTAATT--ATT-ACATTTT-CAAGAGT-AAAATACT-TT--ATTTT-A--TCCATT-GA------------------------ATAA--AAA--T-A-ACA-ATCTC-ATT--A-------TT-G-AA-AA-TAAC-----------ggttgacttgatgagacaatatc
gi|17 : agggtgaTCTA-----AAA-CCAAG--AAATATA--AT--ATAATA--AA-AATTC--AATG-----TT--TC--AG--CTTGA-TATGT-AAT-T-T-CATTC-ACT--GTGAGAC----AGGA--TT------AACA-----CT---C--------------------------TGAAAA--------AAAAAA-AAATCCTGT-----TTCGAG--AAA-TATTCC---AATCC-A-Aaaatttcacaacaaattgtgacgtcacgctaaaatagaaaagttattgtttttagttgggtat
gi|18 : catagatatcacactttttcggtagctactgtctgCCAAAGAAAATGTA--AT--G-AATAG-AA-AATTCTAAAT----T-TT--TT--AG--TTGGA-TATGG-AAT-T-T-CTTTG-TATT-GTGAGAG----AGAA--TTTTAA-AAATGTT-TT-T---CACA-----------------C-TCA-TAAAAA-TA-T---AAAAAA-AAATCTTGT-CTCACTCGTG--AAA-TA
gi|19 : TTAAAG-TAGT-AAGA-TCCATGCATA-TAGATCTT-CAA--TTA---------GCGGG-ATA--------GACTTCACAG-----------TAGC-TTT-----TCAATTGAACCGAAAT-TTTTCTAA-GTC-AACTTTA-TTAC--T-A-------CCCATG-CATTAATTGAC-A-TA
gi|2 : ATCGCATGT-TGATAGG-AAACTTTTTTATTAG-CGGG-CGTTT-GA-GGTGC-ATGA-C-----------------C----AA----------------ATCC-AA---------C--A---------T-ATACAATATGCAT-ATTTACCTTCATACATATTAA-C-AATTATCT-CACACCC-CC-AACAATTG-TT-AGATTTG-CAAAGA-------TACGTTAACTATCAAGGGGC-TA-TTCAATATTTTCAG-C-TTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-AAGATA-------TTT-ATCAAAACACC-TTTTATAA--A-TA-ATCGT-CAAT--GTGCTCGC--AAAT-ATA-C-G-GGT-CATTTGAA-T-G--AAAAG-AACG-TATTT-TATGTTA-C-AT-------TT--ATTCACATTTTTCAACAGT-AAAATACT-GT--ATTTTTA--TC-ATT-GA------------------------ATAA--AAAATT-G-ATA-TTTT--ACT--A-------TT-G-AA-AA-TAAC-----------TA-GTA-AAAATGACG--AA----T-GA-------------T--------T-------------AC---TGATTGTTCA-A---TTATAT-GTTTTG--C-ATAGC-TT-T------ATATCT-------T-T-----TCG-------AGAG-------CAATCATG--TTC-A-----AAA--TAAAG-AAATGTA--AT--A-AAAAGAAA-A--TT--ACTG---C-TT--TT--AG--TTGGA-TATCA-AAT-T-TAATTTC-ACTT-ATGAGAC----AGGATTTTTTAA-ATATATTATTCT---CTCGTG-CT---TCG---ATTC-TCG-TGATAA-TA-TG--AACAAA-AA---CTGTCCTCACTCGTA--AAATAAATTC-AAAATCCGA-ACT-CTTG-T-AC-AAAGTATCAAT--TGTCCTCGTATT-TATAT-ATGGAG--A-GTTTTTTTTT-T-ATAATTATCATGAAA-TATCAGAAGTTTT--AC-AGTCCCTATTACTAAAGCTG-------A-----AATTAAAATGCG-CAATTTT-AAG-TAGC-AA-T-CCCA---GTATTAGATCTTAC-A--TTA------CATGCGGGAATA--------GACTTCATAG-----------TA-T-TTT-----TCAAT--TA-AGAAATATTTTCCAAC----ACCTTTA-TTAC--TAA-------CCCATG-TATCA--TGAC-A-TAGGGTATCACAA-AACGTTAAATTTTCAC-------------------AAAAGCAAC-ATT-G----AATTATTAGCCA-ATTTA-TATTGATTATC--CGTATATGA-------TA-TTTTGCGCATTGCCATACTCAAGT---ACATGTATAATGATTAACAATCA------------------------TCGATT--GTTGACTTGA-TGGG--ACAAT-ATCGT
gi|20 : gaacatctttcatttaaaaccaagtaagcaagacttgataaaatgtttgttacgtagttttgataacaacgTTTT--ATTACAGGGG-CGTTT-GA-GGTGC-AT-A-CAATGCAGTGAATGCACCCTAAAAA----------------ATCCCAA---------C--AATTCACGAAT-ATCCAATATGCGTGATTTA---TTATACATc
gi|21 : tacgtttttctgatgactcgcaTCT-CAC--CC-CC-A-CA-TTG-TT-AGATTTT-CAAA---------------------------------TTAAAGATTT-CAG-C-CTATAC---------CTA-TGTAG-AAATTCATCT-C---TTTC-A-TACA-------TTT-ATTAAA-CACCTTTT-ATAA--A-TA-AT-G
gi|22 : ---G-CAATT---AAG-TAGC-AA-A-TCCA---ATG-TAGATTTTACAA--TTAC--------------ATA--------ATTTTCATAG-----------TA-C-TTA-----TCAAT--AA-TGAAATGTTTTCTAA-GTT-AACTTTATTTAC--T-A-------CCCAT
gi|23 : AAG-AAGC-AA-A-TCCA---GTA-TAGATCTCATAC--TTA------CATGCGGG-GTAGATTACACGACTTCAAAGTACAATTATTATA-C-TTA-----TCAAT--AA-TGAAATATTTTCTAAC
gi|24 : AATAACA--AC----T-GA-------------T--------TGTGACGTCATGTTAC---TAATTGT--G-A---CCTTAC-ATTTTGT-C-ATTGCTTT--------ACGTCC-------T-T-----T-GAAATTTGAGAT-------C-ATCATG--ATCT------AAAACCAAA
gi|25 : G-TACCA-TGTGT-A-T-GT-------TTTTATT-ACATTTT-CAACCTC-AAAATACT-G---AAATT-A--TCCATT-GA------------------------ATAA--AAAT-T-T-ATA-TTTT
gi|26 : -ACTT-GTGAGAC----TGAA--TTTTTT-CA-TATT-TTCA---CCAATG-CT---TCG---A-TT-TTG-TGAAAA-TA-TA--AAAAAA-Ac
gi|3 : AATCGCATGC-TGATTAGGAAACTTTC---TTAC-GGGGGCGTTT-GA-GGCGC-AT-A-C-----------------C----AATGCACCCTAAA-----ATCCCAA---------C--A---------A-ATGCAATATGTAT-ATTTA---TTATACATATTAAAC-AATTTTTTCCAC--CC-GC-A-TA-TTG-TT-ATA-TTG-CAAAGT-------TAC---------C--GGGAC-TA-TTAAAGATTT-CAG-C-CCATAC---------CTA-T--AG-AA
gi|3 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaTTA-A--AGA-------TTTCAGCCCA-TACC-TAT-AGAACCA-TA-AT-TA-C--T--GTGTTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-CATTA-TATGT-A-C-AT-------TT--ATT-ACA-TTT-CAAAAGT-AAAATACT-GT--A-TTT-A--TCCATT-GA------------------------ATAA--AAA--T-G-ATA-TTTTT-ACG--A-------TT-GAAA-AA-TAAC-----------TA-GTG-AAAAT-ACA--AC----T-GATCGTGAAGG----T--------T-------------AC---TGATTGT--G-A---TATTAT-GTGTTG--C-ATAGCTTT-T------AT-------------------------------------------TCATG--TTCTAAATTTAAAATCAAAGAAAATG-A--AT--A-AATA-AAA-AAGTC--AATG---CTTT--TT--AG--TTGGA-ATTCG-AAT-TAT-ATTTC-ACTT-ATAAGAT----AGGA--TTTT-A-AAATATT-TCCA---TTCGTGTTT---TCG---T-AC-TCG-TGAAAA-TA-TG--AAAANN-NNNNNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NNNNNNN-NN---NNNNN-ATAAGA--G-A----TTTTTAT-ATAACTATCATGAAA--TACAGAAG-TTTTGAC-AGT-CCTATTACTAAAGCTAAACGTTTA-----AAATTAAG---A-CAATTTTAAAG-TAGC--A-A-TCCA---GTA-TAGATCTTGCAA--TTAC-----AATGCGGG-TTA--------GACTTCATAG-----------TA-CATGTACTAATCAAT--AA-CAAAATATTTTCTAACATT-A--CTTATTTAC--T-A-------CATATG-CAATA--TGAC-A-TAGGGTAT-ACAA-AACGATAAATGTTCACA-----------------AAAAAGCAACAATTAA--TTAATT---ACCCA-A-TTA-CATCAA-TATCAATGTATATGAATACATGTA-TTTTG-ACATTG-TATACTCAT-TTACACATGTATAATGATAAACAATCA-----------------------CTCAATTA-GTTGACTTGA-TGAG--ACAAT-ATCGTccataattactgtgttccaaatatacggtcatttgaatggaaaagaacgcattatatgtacatttattacatttcaaaagtaaaatactgtatttatccattgaataaaaatgatatttttacgattgaaaaataactagtgaaaatacaactgatcgtgaaggttactgattgtgatattatgtgttgcatagcttttattcatgttctaaatttaaaatcaaagaaaatgaataaataaaaaagtcaatgctttttagttggaattcgaattatatttcacttataagataggattttaaaatatttccattcgtgttttcgtactcgtgaaaatatgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagatttttatataactatcatgaaatacagaagttttgacagtcctattactaaagctaaacgtttaaaattaagacaattttaaagtagcaatccagtatagatcttgcaattacaatgcgggttagacttcatagtacatgtactaatcaataacaaaatattttctaacattacttatttactacatatgcaatatgacatagggtatacaaaacgataaatgttcacaaaaaagcaacaattaattaattacccaattacatcaatatcaatgtatatgaatacatgtattttgacattgtatactcatttacacatgtataatgataaacaatcactcaattagttgacttgatgagacaatatcgtc
gi|4 : cgacatattttcattaaaccaaatacgcgacttgataaagtcgctttgtacgtcgtcttttgacaacaaatcgcatgctgattaggaaactttcttacgggggcgtttgaggcgcataccaatgcaccctaaaatcccaacaaatgcaatatgtatatttattatacatattaaacaattttttccacccgcatattgttatattgcaaagttaccgggactaAATCGCA-GT-TGATAGGATCACTTTT---TTAC-GGGG-CGTTTTGA-GGTG-----A-C-----------------C----AA----------------ATCCCAA---------C--A---------TTATACAATATGCAT-ATTTA---TTATACATATTAAAC-AATTATCT-CAC--CC-CC-A-CA-TTG-TTAAGATTTG-CAAAGA-------TAC---------C--GGGGC-TA-TTAAAGA-TT-CAG-C-CTATAC---------CTATT--AGAAAATTCATCT-CTTTTTTA-A--ATATTTTATTTTT-ATCAAA-CACC-TTT-ATAA--A--A-AT-GG-CA-G--GTGCTC-C--AAAT-ATG-C-G-G-T-CATTTGCA-T-G-GAAAAG-AACGTTATTA-TATGT-A-C-AT-------TT--ATTAACATTTT-CAACAGT--AAATACT-GC--ACTTT-A--TCCAT---A------------------------TTAA--AAA--T-T-ATA-TTTTT-ACT--G-------TT-G-AA-AA-TAAC-----------TA-GTGAAAAATGACAC-AT----T-GA----------------------T-------------ACTGATGATTGT--C-A---TTTTAT-GTTTTG--C-ATAGC-TT-T------ATATCT-------T-T-----T-G-------AGAT-------C-ATCAT---TTCTA-----AAATTCAAAGAAAATGTA--A---A-AATAG-AA-AATTC---ATG---C-TT--TT--TATTTTGAA-TATCA-AAT-T-T-ATTTCAACTTAGTGAGCA----AGGA--TTTTAA-AAATTAT-TTCT---CTCGTG-CT---TCG---T-TCTTCGTTGAAAA-TA-TG--AAAAAACAAAACCTGT-CTCACTCGTGTAAAA-AAATTC-AAAATCC-A-ACTACATGTT-ACAAAAGCATCGAA---GT-CTC-TATT-TATAT-ATAGAG--ATATTTTTTTTTTT-ATAATTATCATGAAA--TACAGAAGTTGTTGAC-AGTCCCTATTGCTAAAGCTG-------------AATTTAAG---G-CAATTTT--AGCTAGCAAA-A-TCCA---GTA-TCGATCTTACAA--TTA------CATGCGGG-ATA--------GACTCCATAG-----------TA-C-TTT-----T-AAT--A---------------AACGTT-AACTTTA-TTAC--T-T-------ACCATGTCATT---TGAC----AGGGTAT-ATAA-AACGTTAAATTTTCAC------------------AAAAAGCAACAATT------AATT---AGCCA-A-TTA-TAT----TATCAACGTATATGG-------T-----------------TAC-CATG-TACACATGTATAATGATTAAC-ATCA-----------------------CTCGATTGCGTTGAC-TGATTGAG--ACATT-ATCGTc
gi|5 : acgacatattttcattaaaaccaagtaagcgactatataaatcgctttgtagcgttagtttgataacaAATCGCATTTGTGATAGGGAAACTTTT--ATTAC-GGG--CGTTTTGA-GGTGC-AT-A-C-----------------T----AA----------------ATCCCAA---------C--A---------C-ATACGATATGCAT-ATTTA---T-ATACATATTAAAC-AATTCTCT-CAC--CC-CC-A-CA-TTG-TT-TAGTTTT-TAAAGA-------TAC---------C--GGGGC-TA-TCAAAGATTT-CAGGC-CTATAC---------CTA-T--AG-AAATCCATCT-C---TTTA-A-GATA-------TTT-ATTAAA-CACC-TTT-ATAA--A-TA-AT-GA-CA-TTTGTGCTC-C--AAAT-ATA-CCA-G-T-CATTTGAA-T-GCGAAAAG-AACG-TATTA-TATGT-A-CCAT-------TT--ATT-ACATTTT-CAACAGTTAAAATACTTGTT-ATTTC-A--TCCATT-GA------------------------ATAA--AAA--TTG-ATA-TTTTT-ACTTTA-------TTTG-AA-AA-TAAC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TG-TTGT--C-AT--TTTTAT-GTTTTG--C-CAAGCCTT-T------CTATC----------T-----T-G-------AGAT-------C-ATCATGTTTTCCA-----AAAATCAAAGAAAATGTA--A---A-AATAGAAA-AATTC--AATG---C-TT--TT--AG--TTGGA-TATCA-AAT-T-C-ATTTC-ACTT-ATGAGAC----CAGG--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TGAAAATTATTG--AAAAAA-AAAACCTG--CTCACTCGTG--AAA-TAATTCAAAAATCC-A-ACTACATG-T-AC-AAAGCATCGAA--TGTCCTC-TA---TGAAT-ATAGAG--G-ATTTTTTTTTAT-AAAGTTATCATGAAATTTACAGAAGCTTTTGAC-AGTCCCTATTACTAAAGCTG-------A-----AATTTAAG---GCCAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TAT-TCTTACAAATTTAC-----CATGCGGG-ATA--------GACTTCATAG-----------TA-C-TTT-----TCAAT--AA-CGAAATATTTTCTAACGTTAAACTTT-TTTACTAT-A-------CCCATG-CATAA--TGAC-ATTTGGGTAT-ACAA-AA-GTTTAATTTTCAC------------------AAAAAGCAACAATT-A--TCAATTA--AGCCA-A-TTATTATTAA-TATCAACGTATATGA-------TA--TTTG-ACATTG-CATACTCATGTTACACATGTATAATGATAAACAATCA-----------------------CTCGATTG-GTTGAC-T-A-TGAGGTACAATCATCGT
gi|6 : TGT-TGAT-GGGAAACTTT---ATTAC-GGAG-CGTT--GAAGGTGC-AT-ATC-----------------C----AA----------------ATCC-AA---------C--A---------T-AT-CAA-ATGCA--ATTTA---TTATACATAT-AAAC-AATTCTCT-TAC--CC-AG-A-CA-TTG-TT-A-ATTTGGCAAAGACACGTAATAC---------C--GGGGC-TA-TTCAAGATT--CAG-C--TATAC---------CTA-T--AG-AAATTCATCT-C---TTTCTA-GAT--------TTT-ATCAA--CACT-TTT-ATAA--A-TA-AT-GAACA-T--GTGT---C--AAAT-ATA---G-G-T-CATT-GAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-A-ATTTT---ACAGT-AAA-TACT-GT--ATTTT----TCCATTTGA------------------------ATAA--AA---T-G-GTAATTTTT-ACTG-A-------TT-G-AA-AAATAAC-----------TA-GT--AAAATGACA--AC------GA-------------T--------T-------------A----TGATTGT--C-A---TTTTAT-GTTTTG--CCATAGATTT-T------AT---T-------TGT-----T-G-------AGAT---------ATCATG--TTT-------AAAACCAAG--AAATGTA--AT--A-AATAGAAATAATTC--AATG---C-TT--TTTTAG--TTGGAGTATC--AAT-T-T-GTT-C-ACGT-ATGAGAC----AGGA--TTT--A-AAATATT-T-CTAGGCTCGTG-CT---TCG---A-TC-TCG--GAACA-AA-TG--AAAAAA-AA--CCTGT-CTCGCTCGTA--AAA-TATTTCAAAA-TCC-A-ACTACATG-T-CA-AAAGCATCGAA--TGTC-TC-TAAGTTATAT-ATGGAG----ATTTTTATTT-T-ATAATTCT-ATGAAA-T-ACAGAAGTTTT-GAC-ATTCCCTATTACTAAAGCTG-------A-----AATT-AAG---G-CAATTTTAAAG-TAGC-AA-AATCCA---GTA-TTAATCTTACAA--TTAA------ATG-GGG-ATA--------GACTTCATAG-----------TT-A-TTT-----TCAAT--AA-CGAAATATTTTC------T-AACTTTA-TTAC--T-AGGGAGAGCAGATG-CATTA--TGACGA-TAAGGTAT-ACGGTAACG
gi|7 : tcttttcattaaaccagtatgcgaacttgataatatgctttgtacgtaggtttggataacaaatgc-AATTCTCT-CAC--CC-CCCA-CA-TTG-TT-AGGTTTT-CAAAGA-------TAC---------C--GGG-C-TA-TCAAAGATTT-CAG-C-CTATAC---------CTA-T--AG-AAATTCATCT-C---TTTA-A-GATA-------TTT-ATTAAA-CACC-TTTTATAA--A-TA-AT-GA-CA-T--GTGCTC-C--AAAT-ATA-C-G-G-T-CATTTGAA-T-G-GAAAAG-AACG-TATTA-TATGT-A-C-AT-------TT--ATT-ACATTTT-CAACAGT-AAAATACT-GT--ATTTC-T--TCCATT-GA------------------------ATAA--AAA--T-G-GTA-TTTTT---------------------------AC-----------TA-GTG-AAAATAACA--AC----T-GA-------------T--------T-------------AC---TGA----------------------TCG--C-ATAGCTTT-T------CTATCT-------T-T-----T-T-------GGAT-------C-ATCATG--TTCT------AAAATCAAA-AAAATGTA--AT--A-AATAG-AA-AATGC--AATG---C-TT--TT--TG--TTGGA-TATCA-AAT-T----TTTC-ACTT-ATGAGAC----AGGA--TTTTAA-AAATATT-TTCT---CTCGTG-CT---TCG---A-TC-TCG-TT-AAA-TA-TT--GAAANN-NNNNNNNNN-NNNNNNNNNN--NNN-NNNNNNNNNNNNNN-N-NNNNNNNN-N-NN-NNNNNNNNNNN--NA------TA---TACAT-GTAGAGATA-ATCTTTTTT--T-ATAATTATCATGAAA--TACAGAAG-TTTTGAC-AGTCCCTATTACTAAGGCTG-------A-----AA-TTAAG---G-CAATTTTAAAG-TAAC-AA-A-TCCA---GTA-TATATCTTACAA--TTA------CATGCggaacgtttcgacgatagacatt
gi|8 : AATCGCATGT-TGAT--GGAAACTTT---ATTAC-AGGG-CGTTTTGA-G-CGC-ATGA-C-----------------C----AATGCACCCTATAAAGAGGTCCCAA---------CCAA---------T-ATGCA-TATGTAT-ATTTA---TTATACATAT-AAAC-AATTCTCT-CAC--CC-CC-A-TA-TTGGTT-ATATTTG-CAAAGT-------TAC---------C--GGG-C-TACTTAAAGATTT-CAG-CTCCATAC---------CTA-T--AG-AAATTCATCT-C---TTT---------------TTT-A---AA-CACC-TTTTATAA--AATAGAT-TA-CT-TT-GTGTTC-C--AAATTATA-C-G-G-T-CATTTGAAATAG-GAAAAG-A-CG-CATTA--ATGT-AAC-AT-------TT--ATT-ACATTTT-CAATAGT-AAAATACT-GT--ATTTT----TTCATT-GA------------------------ATAA--AAA--T-T-ATA-TTTTT-ACT--A-------TT-G-AACAA-TAAC-----------TA-GTG-AAAAT-ACATCAC----TGGA-------------TTGTGAAGGT-------------AC---TGATTGTGAA-A---TATTATGGTTTTG--C-ATAGCTTT-A------ATATCT-------T-T-----T-G-------AGA
gi|9 : gaacatattttcattaaaccaaataagcgaaagtcgctttgtacgtcattttgacaacGAAACTTTT--ATTAC-GGGG-CG--TTGA-GGTGCAAT-A-C-----------------C----AA----------------ATTCCAA---------C------------T-AT--AATATACAT-AT------------AAATT--AC-AATTCTCT-CAC--CCGCC-A-CA-TTG-TT-AGATTTG-CAAAGA-------TAC---------C--GAG-------TAAAGATTT-CAG-C-CTATACCTATATATACTA-T--AG-AAATTCATCT-C---TTTA-A-GTAA-------TTT-ATTAAA-CACC-CTT-ATAG--A-TA-AT-GA-CA-T--GTGCTC-CAAAAAT-ATA-C-GCG-T-ATTTTGAC-T-G-GAAAAG-AACG-c
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): ACGACATCTTTTCATTAAATCAATTAAGCGACTTGATAAAGTCGCTTTGT