lowQualScore : 555555555555 1 11 111 44444444 111111 1 111 11 1 111 11 1 222222 1 555555 4444444444444444444444 99999999999999999999999999999999999999 222 111 1 22222 333333 11 1 1
lowQualScore : 6 6 3 111111111111 2 0 2 33 777 7 1 6 6 6 66666666 2 8 99 999999 6 5 6 6 444 33 8 8 6 5 3 777 11 88 0 6 444444 6 3 5 8 7 444444 6 0 1 7777777777777777777777 00000000000000000000000000000000000000 333 6 2 8 6 444 0 8 44444 88 9 444444 88 6 6 5 3 7 5 6 9
lowQualScore : . . . ............ . . . .. ... . . . . . ........ . . .. ...... . . . . ... .. . . . . . ... .. .. . . ...... . . . . . ...... . . . ...................... ...................................... ... . . . . ... . . ..... .. . ...... .. . . . . . . . .
lowQualScore : 0 0 2 000000000000 5 0 5 88 555 3 0 7 7 7 33333333 8 5 22 222222 7 0 0 0 000 88 0 0 0 0 8 000 00 88 8 0 000000 0 5 0 0 8 888888 0 8 0 1111111111111111111111 00000000000000000000000000000000000000 333 0 0 0 0 000 0 0 22222 88 2 222222 33 7 0 0 7 7 0 0 0
consensus : ACGCAAAATGTAACATTATTATTAT--NAT--ATG-CTGAGTGTCCAT-AATGTGNA--TTA---AAAACACCA-C-C-ACTTTGANTAG-T-GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCNCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTTA--TACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTGTTTT-ACAGCCGATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------TTTACAGCGA-----TATAG---GCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AAAA-AGT-TGA-TTT-AAACTCTTAAAAA-NGNTATTTAGAACTGGAGGCCAATG--TTAACTATATAATAAAAATTAACGACGTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAGCG
Reference ( gi|2 ) : ATGTAAAATGTAACATTATTATTAT--TAT--ATG-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACACCA-C-C-ACTTTGAGTAGTTTGGCGAAGTCCAGTTTTGAG--TAT------TT-TAAAACATCTATAGGCTTACCTCTGTCTCTCATA-AAAT-CGCCACGCACTTTTA--CACT--GAAATTCATCGCATGTTT-AGTTTTCTTGG-ACATTAGATGTTGGCCCCTAAATAAAGCTGGTTCATCAGTCCCGAAACAATTATGC-TACTCATGTTTTGTTTTTACAGCTGACTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------TTTACGGCGA-----TATAG---GCCTATTTATCGTTTTTCAGAGTAATCATCTACAG-AGTGCTTTACAATTTACCAGCATTACAAT---AACA-AGT-TGA-TTT-AAACTCTTAAAAATGGGTATTTAGAACTGGAGGCCAATG--TTAACTATATAACAAAACTTAACGACTTAATTCTTGAGGGCCTGCATAGCTCAGTCGGTAACG
gi|1 : ACGCAAAATGTAACATTATTATTATATCATTAATG---GAGTGCCCATTAATGTGGA--TTT---AAA-CACCAAC-CGAATTGGAGTA--TT------------TTTTGAG--TAT------TT--AAAATAACGACTGGTTGGTCG-TGTCTCTCATA-AAAT-AGCCGCGCAGTTTTA--TACTCGGAAACTCAACGCATGTTTTATTTTTCTTGG-ACATTAGATGTTGGTCACTAAGTAAAGCTGGATCGTCAGTCCCAATACGATTAGGC-TACAAATTTTCTGTTTTCACAGCTGATTCAGACAAATGATATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATT-ACTATTGAGAAAT---------TTTACAACGA-----TATAG---GCCTATCTATTGTTTTTCAGAGTAATCATATACAT-AATGCTTTACAATTTACCAGCATTACAAT---AAAA-AGT-TGATTTT-AAACTC--------------TTAGAACTTCAGGCCAATG--TTGA-TATATAATAAAAATTAACGACTCATTGATCGAGGACCTGCGTAGCTCAGTCGGTAACG
gi|5 : tatgcgtagcaaaacctgactactattttgggatagtaACGCAAAATGTAACATTATTATTAT---------G-CTAAGTGTC--T-AATGTGCA--TTA---CAAACACCA-C-C-ACTTTGATGAG----GCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTC--ATA-AAAT-CGCCGCGCAGTTTTA--TACT--GAGATTCATCGCATGTTT-AGTTTTT-------------------------AATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTGTTT------CTGATTCAGACGAATGACATCACATT
gi|9 : tggactatacgtcaaaccctgactactattttggcagtgtacACGCAAAATGTAACATTA---TTAT--TAT--TAG-CTGAGTGTCCAT-AATGAGAATGTTATACAAAATAACA-T-C-A
gi|3 : ggactatgcgtcaaaacctgactacaattttggcatagtacAATTGTAACATTATTATTAT--ATT--ATGGCTAAGTGTCCAT-AATGTGCA--TTA---AAA-CAC-A-CAC-ACTTTGA-----TGGGCAAAGTCTATTTTTTAG--TAT------TT-TAAAACATCGACAGGCTTGC-----TCTCTTATATAAAT-CGCCGCGCAGTTT-A--TACT--GAAATTCATCGCATGTT--AGTTTTCTTGGGACATTAGATGTCGGTCCATAAATAAAGCTG-TTCGTCAG-CCCGTAACAATTAGGC-AACTCATATTTTGTTT------CCGATTCAG-TAGATGACATCCCATTG----------ACGT-A------CAAACGTTTCCAATGATGTTGGTTGCTTACTAATCGA--AT------ATGTGAGAACTTTTACAGCGA-----TATAG---GCCTATCTATTGCTTTTCAGAGTAATCATCAATAG-GATGCTTTACAAT
gi|6 : gaccatgcgtcaataaacgttactactatttgcatagtacacgcAATACTA-C-C-ACTTCGAGTGGTTCGGCCAAGTCCAGTTTTGAA--TATATAAATTTGTAAAACATCGACAGGCTTGCTACTGTCCCTCATG-AAATACGCCGAGCAGTTCCA--TACT--GAATTTTATCGCATGTTT-AGTTTTCTTGG-ATATTAGATGTTGGT-----AATAAAGCTGGTTCGTCAGACCCGAAATA
gi|14 : tACACCA-C-C-ACTTTGATGAG----GCGAAGTCCATTTTTGAGTTTAT------TT-T-AAACATCGACAAGTT
gi|7 : TAGNNNNNNNNNNNNNNNNNNNNNN--NNN------TT-TAAAACATCGACAAGCTTGCCTCTGTCTC--ATA-AAAT-CACCGCGCAGTTTTAAATACT--GAAATTCATCACATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACAA
gi|4 : GCTGGTTTGTCAGTCCCGAAACGATTAGGCCTACTCATATTTTGTTTTAACAGCCGATTCAGATGAATGACATCTCATTGTTTACATTTTACATCAGTCACTCAAACTTTTCCAGTGACGTTGGTTGCTGACTAATC-A--AT------AT---------T-----GAGAACTTTCACAGTTCACCTATCTATCATTTTTCAGAGTAATCATCTACAG-AATGCTTTACAGTTTACCAACATTACAAT---AAAA-AGT-TGA-TTTTAAACTCTTAAAAAGAGGTATTTAGAACTGGAGGCTAATG--TTACCTATATAATAAAAATTAACAACATAATGCTCGAGGGCCTGCGTAGCTCAGTCAGTAGCG
gi|16 : AACGATTAGGC-TACTCATATTTTGTTT------CTAATTCAGACGAATGACATCACATTG----------
gi|10 : ATTGTTTTTCAGAGTAATCATCTACAGAAATGC---ATACTTTATCAGCCTTACAATTAAAAAA-AGTATTA-TTT--TACCCGTAAA---CGATATTAAGAA
gi|15 : ATCATCTACAG-AATGATTTACAATTTACCAACATTACAAC---AGCACAAT-T---TTT-AAAgaa
gi|8 : TTTACAATTTACCAGCATTACAAT---AAAA-AGTGTAT-TTT-AAACTCTTAAAAACGGTTATTTAGAACTGGGGGCCAATGTTTTAACTATATAATAAAAATTAACTACGTCATGCTCGTTGGCCTGCCTAGCTTAGTCGGT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CATTGCGTTCGAAACGCCTGACACTATTTTGGCATAGGTACACTCAAAATGTAACATTATTATTA
Unaligned ( gi|12 ): GGCGTCAAAACCCAGACTACTATTTTGGCAAATTACACACAAATTGTAACATTATTATATTAT
Unaligned ( gi|13 ): CAATTGCATCAAACCACTGACTACTATTTTGGCATAGTACACGCAAAATGTAACTTATTATA
Alignments
lowQualScore : 333333333 11 111 4444444 111111 111 1 3333333 3333333333 222222 1111 77777777777777777777777777 111 11111 2222222 11
lowQualScore : 888888888 8 8 1 11 444 5 5 0 1111111 1 99 666666 5 666 6 6 000 99 6 0 2 777 1 6 6 9999999 0 5555555555 2 888888 4444 88888888888888888888888888 2 2 6 111 6 55555 6 7777 2222222 33 2 0 6 0 0
lowQualScore : ......... . . . .. ... . . . ....... . .. ...... . ... . . ... .. . . . ... . . . ....... . .......... . ...... .... .......................... . . . ... . ..... . .... ....... .. . . . . .
lowQualScore : 666666666 0 0 0 00 000 0 7 7 8888888 0 22 444444 7 888 7 7 888 22 7 8 5 555 7 7 7 8888888 7 0000000000 5 888888 8888 00000000000000000000000000 5 5 7 777 7 55555 7 6666 4444444 88 5 2 5 2 7
consensus : ACGCAAAATGTAACATTATTATTATN--AT--ATG-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CACCACTTTGANTAGT--GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTTT-A-CAGCCGATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGT-TGA-TTT-AAACTCTTAAAAA-N-GGT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAATAAAAATTAACGACNTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAACG
Reference ( family-1054 ) : ACGCAAAATGTAACATTATTATTATN--AT--ATG-CTGAGTGTCCAT-AATGTGNA--TTA---AAAACAC-CACCACTTTGANTAGT--GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCNCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTTT-A-CAGCCGATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGT-TGA-TTT-AAACTCTTAAAAA-N-GNT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAATAAAAATTAACGACGTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAGCG
gi|1 : ACGCAAAATGTAACATTATTATTATATCATTAATG---GAGTGCCCATTAATGTGGA--TTT---AAA-CAC-CA--ACC--GAAT--T--GG---AGTAT-TTTTTGAG--TAT------TT--AAAATAACGACTGGTTGGTCG-TGTCTCTCATA-AAAT-AGCCGCGCAGTTTT--ATACTCGGAAACTCAACGCATGTTTTATTTTTCTTGG-ACATTAGATGTTGGTCACTAAGTAAAGCTGGATCGTCAGTCCCAATACGATTAGGC-TACAAATTTTCTG-TTTTCA-CAGCTGATTCAGACAAATGATATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATT-ACTATTGAGAAAT---------T--------TTACAACGATATAGGCCTATCTATTGTTTTTCAGAGTAATCATATACAT-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGT-TGATTTT-AAACTC----------------TTAGAACTTCAGGCCAATGTT--GA-TATATAATAAAAATTAACGACTCATTGATCGAGGACCTGCGTAGCTCAGTCGGTAACG
gi|10 : tatgcgtagcaaaacctgactactattttgggatagtaATTGTTTTTCAGAGTAATCATCTACAGAAATGC---ATACTTTATCAGCCTTACAATTAAAA-AAAGTATTA-TTT--TACCCGT--AAA-C-GAT-ATTAAGAA
gi|11 : ACTCAAAATGTAACATTATTATTAgaa
gi|14 : cattgcgttcgaaacgcctgacactattttggcataggtacACAC-CACCACTTTGATGAG----GCGAAGTCCATTTTTGAGTTTAT------TT-T-AAACATCGACAAGTT
gi|15 : ATCATCTACAG-AATGATTTACAATTTACCAACATTACAAC---AGCACAAT-T---TTT-AAA
gi|16 : AACGATTAGGC-TACTCATATTTTG-TTT-------CTAATTCAGACGAATGACATCACATTG----------
gi|2 : ATGTAAAATGTAACATTATTATTATT--AT--ATG-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CACCACTTTGAGTAGTTTGGCGAAGTCCAGTTTTGAG--TAT------TT-TAAAACATCTATAGGCTTACCTCTGTCTCTCATA-AAAT-CGCCACGCACTTTT--ACACT--GAAATTCATCGCATGTTT-AGTTTTCTT-GGACATTAGATGTTGGCCCCTAAATAAAGCTGGTTCATCAGTCCCGAAACAATTATGC-TACTCATGTTTTGTTTTT-A-CAGCTGACTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACGGCGATATAGGCCTATTTATCGTTTTTCAGAGTAATCATCTACAG-AGTGCTTTACAATTTACCAGCATTACAAT---AA-CAAGT-TGA-TTT-AAACTCTTAAAAATG-GGT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAACAAAACTTAACGACTTAATTCTTGAGGGCCTGCATAGCTCAGTCGGTAACG
gi|3 : ACGCAAT-TGTAACATTATTATTATA--TT--ATGGCTAAGTGTCCAT-AATGTGCA--TTA---AAA-CACACAC-ACTTTGAT--G---GGCAAAGTCTATTTTTTAG--TAT------TT-TAAAACATCGACAGGCTTGC-----TCTCTTATATAAAT-CGCCGCGCAGTTT---ATACT--GAAATTCATCGCATGTT--AGTTTTCTTGGGACATTAGATGTCGGTCCATAAATAAAGCTG-TTCGTCAG-CCCGTAACAATTAGGC-AACTCATATTTTG-TTT-------CCGATTCAG-TAGATGACATCCCATTG----------ACGT-A------CAAACGTTTCCAATGATGTTGGTTGCTTACTAATCGA--AT------ATGTGAGAACTT--------TTACAGCGATATAGGCCTATCTATTGCTTTTCAGAGTAATCATCAATAG-GATGCTTTACAAT
gi|4 : gaccatgcgtcaataaacgttactactatttgcatagtacGCTGGTTTGTCAGTCCCGAAACGATTAGGCCTACTCATATTTTG-TTTT-AACAGCCGATTCAGATGAATGACATCTCATTGTTTACATTTTACATCAGTCACTCAAACTTTTCCAGTGACGTTGGTTGCTGACTAATC-A--AT------AT---------TGAGAACTTTCACAG---TTCA--CCTATCTATCATTTTTCAGAGTAATCATCTACAG-AATGCTTTACAGTTTACCAACATTACAAT---AA-AAAGT-TGA-TTTTAAACTCTTAAAAA-GAGGT-ATTTAGAACTGGAGGCTAATGTT--ACCTATATAATAAAAATTAACAACATAATGCTCGAGGGCCTGCGTAGCTCAGTCAGTAGCG
gi|5 : ACGCAAAATGTAACATTATTATTAT---------G-CTAAGTGTC--T-AATGTGCA--TTA---CAAACAC-CACCACTTTGATGAG----GCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTC--ATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAGATTCATCGCATGTTT-AGTTT----------TTA---------------ATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTT-------CTGATTCAGACGAATGACATCACATT
gi|6 : tggactatacgtcaaaccctgactactattttggcagtgtacAATAC-TACCACTTCGAGTGGTTCGGCCAAGTCCAGTTTTGAA--TATATAAATTTGTAAAACATCGACAGGCTTGCTACTGTCCCTCATG-AAATACGCCGAGCAGTTCC--ATACT--GAATTTTATCGCATGTTT-AGTTTTCTT-GGATATTAGATGTTGGT-----AATAAAGCTGGTTCGTCAGACCCGAAA
gi|7 : t------TT-TAAAACATCGACAAGCTTGCCTCTG--TCTCATA-AAAT-CACCGCGCAGTTTTAAATACT--GAAATTCATCACATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACAAta
gi|8 : tagnnnnnnnnnnnnnnnnnnnnnnnnnTTTACAATTTACCAGCATTACAAT---AA-AAAGTGTAT-TTT-AAACTCTTAAAAA-C-GGTTATTTAGAACTGGGGGCCAATGTTTTAACTATATAATAAAAATTAACTACGTCATGCTCGTTGGCCTGCCTAGCTTAGTCGGT
gi|9 : ACGCAAAATGTAACATTATTATTATT--A-----G-CTGAGTGTCCAT-AATGAGAATGTTATACAAAATAA-CATCAc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GGCGTCAAAACCCAGACTACTATTTTGGCAAATTACACACAAATTGTAACATTATTATATTAT
Unaligned ( gi|13 ): CAATTGCATCAAACCACTGACTACTATTTTGGCATAGTACACGCAAAATGTAACTTATTATA
Alignments
lowQualScore : 333333333 11 111 4444444 111111 111 1 3333333 3333333333 222222 1111 77777777777777777777777777 111 11111 111 11
lowQualScore : 888888888 8 8 11 444 5 5 0 1111111 1 99 666666 5 666 7 6 6 000 99 6 0 2 777 1 6 6 9999999 0 5555555555 2 888888 4444 88888888888888888888888888 2 2 6 111 6 55555 6 7777 999 8 33 2 0 1 0
lowQualScore : ......... . . .. ... . . . ....... . .. ...... . ... . . . ... .. . . . ... . . . ....... . .......... . ...... .... .......................... . . . ... . ..... . .... ... . .. . . . .
lowQualScore : 666666666 0 0 00 000 0 7 7 8888888 0 22 444444 7 888 3 7 7 888 22 7 8 5 555 7 7 7 8888888 7 0000000000 5 888888 8888 00000000000000000000000000 5 5 7 777 7 55555 7 6666 888 0 88 5 2 0 2
consensus : ACGCAAAATGTAACATTATTATTATN--AT--ATG-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CACCACTTTGANTAGT--GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTTT-A-CAGCCGATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGT-TGA-TTT-AAACTCTTAAAAA-N-GGT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAATAAAAATTAACGACNTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAACG
Reference ( family-1054 ) : ACGCAAAATGTAACATTATTATTATN--AT--ATG-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CACCACTTTGANTAGT--GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTTT-A-CAGCCGATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGT-TGA-TTT-AAACTCTTAAAAA-N-GGT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAATAAAAATTAACGACNTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAACG
gi|1 : ACGCAAAATGTAACATTATTATTATATCATTAATG---GAGTGCCCATTAATGTGGA--TTT---AAA-CAC-CA--ACC--GAAT--T--GG---AGTAT-TTTTTGAG--TAT------TT--AAAATAACGACTGGTTGGTCG-TGTCTCTCATA-AAAT-AGCCGCGCAGTTTT--ATACTCGGAAACTCAACGCATGTTTTATTTTTCTTGG-ACATTAGATGTTGGTCACTAAGTAAAGCTGGATCGTCAGTCCCAATACGATTAGGC-TACAAATTTTCTG-TTTTCA-CAGCTGATTCAGACAAATGATATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATT-ACTATTGAGAAAT---------T--------TTACAACGATATAGGCCTATCTATTGTTTTTCAGAGTAATCATATACAT-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGT-TGATTTT-AAACTC----------------TTAGAACTTCAGGCCAATGTT--GA-TATATAATAAAAATTAACGACTCATTGATCGAGGACCTGCGTAGCTCAGTCGGTAACG
gi|10 : tatgcgtagcaaaacctgactactattttgggatagtaATTGTTTTTCAGAGTAATCATCTACAGAAATGC---ATACTTTATCAGCCTTACAATTAAAA-AAAGTATTA-TTT--TACCCGT--AAA-C-GAT-ATTAAGAA
gi|11 : ACTCAAAATGTAACATTATTATTAgaa
gi|14 : cattgcgttcgaaacgcctgacactattttggcataggtacACAC-CACCACTTTGATGAG----GCGAAGTCCATTTTTGAGTTTAT------TT-T-AAACATCGACAAGTT
gi|15 : ATCATCTACAG-AATGATTTACAATTTACCAACATTACAAC---AGCACAAT-T---TTT-AAA
gi|16 : AACGATTAGGC-TACTCATATTTTG-TTT-------CTAATTCAGACGAATGACATCACATTG----------
gi|2 : ATGTAAAATGTAACATTATTATTATT--AT--ATG-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CACCACTTTGAGTAGTTTGGCGAAGTCCAGTTTTGAG--TAT------TT-TAAAACATCTATAGGCTTACCTCTGTCTCTCATA-AAAT-CGCCACGCACTTTT--ACACT--GAAATTCATCGCATGTTT-AGTTTTCTT-GGACATTAGATGTTGGCCCCTAAATAAAGCTGGTTCATCAGTCCCGAAACAATTATGC-TACTCATGTTTTGTTTTT-A-CAGCTGACTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACGGCGATATAGGCCTATTTATCGTTTTTCAGAGTAATCATCTACAG-AGTGCTTTACAATTTACCAGCATTACAAT---AA-CAAGT-TGA-TTT-AAACTCTTAAAAATG-GGT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAACAAAACTTAACGACTTAATTCTTGAGGGCCTGCATAGCTCAGTCGGTAACG
gi|3 : ACGCAAT-TGTAACATTATTATTATA--TT--ATGGCTAAGTGTCCAT-AATGTGCA--TTA---AAA-CACACAC-ACTTTGAT--G---GGCAAAGTCTATTTTTTAG--TAT------TT-TAAAACATCGACAGGCTTGC-----TCTCTTATATAAAT-CGCCGCGCAGTTT---ATACT--GAAATTCATCGCATGTT--AGTTTTCTTGGGACATTAGATGTCGGTCCATAAATAAAGCTG-TTCGTCAG-CCCGTAACAATTAGGC-AACTCATATTTTG-TTT-------CCGATTCAG-TAGATGACATCCCATTG----------ACGT-A------CAAACGTTTCCAATGATGTTGGTTGCTTACTAATCGA--AT------ATGTGAGAACTT--------TTACAGCGATATAGGCCTATCTATTGCTTTTCAGAGTAATCATCAATAG-GATGCTTTACAAT
gi|4 : gaccatgcgtcaataaacgttactactatttgcatagtacGCTGGTTTGTCAGTCCCGAAACGATTAGGCCTACTCATATTTTG-TTTT-AACAGCCGATTCAGATGAATGACATCTCATTGTTTACATTTTACATCAGTCACTCAAACTTTTCCAGTGACGTTGGTTGCTGACTAATC-A--AT------AT---------TGAGAACTTTCACAG---TTCA--CCTATCTATCATTTTTCAGAGTAATCATCTACAG-AATGCTTTACAGTTTACCAACATTACAAT---AA-AAAGT-TGA-TTTTAAACTCTTAAAAA-GAGGT-ATTTAGAACTGGAGGCTAATGTT--ACCTATATAATAAAAATTAACAACATAATGCTCGAGGGCCTGCGTAGCTCAGTCAGTAGCG
gi|5 : ACGCAAAATGTAACATTATTATTAT---------G-CTAAGTGTC--T-AATGTGCA--TTA---CAAACAC-CACCACTTTGATGAG----GCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTG--TCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAGATTCATCGCATGTTT-AGTTT----------TTA---------------ATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTT-------CTGATTCAGACGAATGACATCACATT
gi|6 : tggactatacgtcaaaccctgactactattttggcagtgtacAATAC-TACCACTTCGAGTGGTTCGGCCAAGTCCAGTTTTGAA--TATATAAATTTGTAAAACATCGACAGGCTTGCTACTGTCCCTCATG-AAATACGCCGAGCAGTTCC--ATACT--GAATTTTATCGCATGTTT-AGTTTTCTT-GGATATTAGATGTTGGT-----AATAAAGCTGGTTCGTCAGACCCGAAA
gi|7 : t------TT-TAAAACATCGACAAGCTTGCCTCTG--TCTCATA-AAAT-CACCGCGCAGTTTTAAATACT--GAAATTCATCACATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACAAta
gi|8 : tagnnnnnnnnnnnnnnnnnnnnnnnnnTTTACAATTTACCAGCATTACAAT---AA-AAAGTGTAT-TTT-AAACTCTTAAAAA-C-GGTTATTTAGAACTGGGGGCCAATGTTTTAACTATATAATAAAAATTAACTACGTCATGCTCGTTGGCCTGCCTAGCTTAGTCGGT
gi|9 : ACGCAAAATGTAACATTATTATTATT--A-----G-CTGAGTGTCCAT-AATGAGAATGTTATACAAAATAA-CATCAc
blockSeqs : TATAT G . TG TAC A A GTAGTTT G TT ATAAAT G CTC T T A TAA . . G G CCC T C T TAACAG TTTACATTTT C GTCACT GA ATGTGAGAACTT C G A TAA C ATTA T TTAA TG T TT C T
blockSeqs : ATTAT . . . . A . GTGGTTC G . . . CTC T . . T . . G G CCA T . . TACAG . C . A ATTGAGAACTT C G . . . GTAT . TTAA GA . . C A
blockSeqs : TA . . . . A . TGAG A . . . TAC T . . T . . . G CCC T . . . . . . A ATT . . . . . TGA . TTAA C . . C G
blockSeqs : . . . . . A . TGAG G . . . CTC . . . C . . . G . A . . . . . . . TGA . GT C .
blockSeqs : A . TG C . . . . . . . . . . . . . T . . . . . . T .
blockSeqs : . . . . .
blockSeqCons : ********* TGAG*** CTC ** ******* GTNA* TTAA CG*
originalCons : ACGCAAAATGTAACATTATTATTATN--AT--ATG-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CACCACTTTGANTAGT--GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTTT-A-CAGCCGATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGT-TGA-TTT-AAACTCTTAAAAA-N-GGT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAATAAAAATTAACGACNTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAACG
finalCons : ACGCAAAATGTAACATTATTATTAT---------G-CTGAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CACCACTTTGATGAG---GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTG-TTT-------CCGATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AA-AAAGTGTNA-TTT-AAACTCTTAAAAACG-GGT-ATTTAGAACTGGAGGCCAATGTT--AACTATATAATAAAAATTAACGACNTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAACG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GGCGTCAAAACCCAGACTACTATTTTGGCAAATTACACACAAATTGTAACATTATTATATTAT
Unaligned ( gi|13 ): CAATTGCATCAAACCACTGACTACTATTTTGGCATAGTACACGCAAAATGTAACTTATTATA
Alignments
lowQualScore : 6666666666666666 11 111 44444444 111111 111 1 44444444444444 3333333333 222222 1111 77777777777777777777777777 111 22222 11 11
lowQualScore : 0000000000000000 8 11 444 5 5 5 5 1 55555555 2 99 666666 5 666 7 6 6 000 99 6 2 0 777 1 6 88888888888888 5555555555 2 888888 4444 88888888888888888888888888 2 2 6 111 77777 0 7777 11 3 33 2 0 1 0
lowQualScore : ................ . .. ... . . . . . ........ . .. ...... . ... . . . ... .. . . . ... . . .............. .......... . ...... .... .......................... . . . ... ..... . .... .. . .. . . . .
lowQualScore : 4444444444444444 0 00 000 0 7 7 7 7 33333333 5 22 444444 7 888 3 7 7 888 22 7 5 8 555 7 7 22222222222222 0000000000 5 888888 8888 00000000000000000000000000 5 5 7 777 44444 8 6666 44 2 88 5 2 0 2
consensus : ACGCAAAATGTAACATTATTATTATTATAT-GCT-------GAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CA-CC-ACTTTGA-TGAG---GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTGTTT------CC------GATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AAAAAGT-TGATTTTAAACTCTTAAAAACGGGTATTTAGAACTGGAGGCCAATG--TTAACTATATAATAAAAATTAACGACNTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAACG
Reference ( family-1054 ) : ACGCAAAATGTAACATTATTATTAT------GCT-------GAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CA-CC-ACTTTGA-TGAG---GGCGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTGTCTCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAAATTCATCGCATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTGTTT------CC------GATTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACAGCGATATAGGCCTATCTATCGTTTTTCAGAGTAATCATCTACAG-AATGCTTTACAATTTACCAGCATTACAAT---AAAAAGTGTNA-TTTAAACTCTTAAAAACGGGTATTTAGAACTGGAGGCCAATG--TTAACTATATAATAAAAATTAACGACNTAATGCTCGAGGGCCTGCGTAGCTCAGTCGGTAACG
gi|1 : ACGCAAAATGTAACATTATTATTAT------ATCATTAATGGAGTGCCCATTAATGTGGA--TTT---AAA-CAC-CAACCGAATT--------------GGAGTAT-TTTTTGAG--TAT------TT--AAAATAACGACTGGTTGGTCG-TGTCTCTCATA-AAAT-AGCCGCGCAGTTTT--ATACTCGGAAACTCAACGCATGTTTTATTTTTCTTGG-ACATTAGATGTTGGTCACTAAGTAAAGCTGGATCGTCAGTCCCAATACGATTAGGC-TACAAATTTTCTGTTT------TCACAGCTGATTCAGACAAATGATATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATT-ACTATTGAGAAAT---------T--------TTACAACGATATAGGCCTATCTATTGTTTTTCAGAGTAATCATATACAT-AATGCTTTACAATTTACCAGCATTACAAT---AAAAAGT-TGATTTTAAACTC--------------TTAGAACTTCAGGCCAATG--TTGA-TATATAATAAAAATTAACGACTCATTGATCGAGGACCTGCGTAGCTCAGTCGGTAACG
gi|10 : tatgcgtagcaaaacctgactactattttgggatagtaATTGTTTTTCAGAGTAATCATCTACAGAAATGC---ATACTTTATCAGCCTTACAATTAAAAAAAGTATTA-TTT-TACCCGT--AAAC-GATATTAAGAA
gi|11 : ACTCAAAATGTAACATTATTATTAgaa
gi|14 : cattgcgttcgaaacgcctgacactattttggcataggtacACAC-CA-CC-ACTTTGA-TGA----GGCGAAGTCCATTTTTGAGTTTAT------TT-T-AAACATCGACAAGTT
gi|15 : ATCATCTACAG-AATGATTTACAATTTACCAACATTACAAC---A
gi|16 : AACGATTAGGC-TACTCATATTTTGTTT------CT------AATTCAGACGAATGACATCACATTG----------gcacaatttttaaa
gi|2 : ATGTAAAATGTAACATTATTATTATTATAT-GCT-------GAGTGTCCAT-AATGTGCA--TTA---AAAACAC-CA-CC-ACTTTGA-GTAGTTTGGCGAAGTCCAGTTTTGAG--TAT------TT-TAAAACATCTATAGGCTTACCTCTGTCTCTCATA-AAAT-CGCCACGCACTTTT--ACACT--GAAATTCATCGCATGTTT-AGTTTTCTTGG-ACATTAGATGTTGGCCCCTAAATAAAGCTGGTTCATCAGTCCCGAAACAATTATGC-TACTCATGTTTTGTTTTTACAGCT------GACTCAGACGAATGACATCACATTG----------ACGTCA------CAAACGTTTCCAATGACGTTGGTTGCTTACTAATC-A--AT------AT---------T--------TTACGGCGATATAGGCCTATTTATCGTTTTTCAGAGTAATCATCTACAG-AGTGCTTTACAATTTACCAGCATTACAAT---AACAAGT-TGA-TTTAAACTCTTAAAAATGGGTATTTAGAACTGGAGGCCAATG--TTAACTATATAACAAAACTTAACGACTTAATTCTTGAGGGCCTGCATAGCTCAGTCGGTAACG
gi|3 : ACGCAAT-TGTAACATTATTATTATATTATGGCT-------AAGTGTCCAT-AATGTGCA--TTA---AAA-CACACA-C--ACTTTGA-TG-----GGCAAAGTCTATTTTTTAG--TAT------TT-TAAAACATCGACAGGCTTGC-----TCTCTTATATAAAT-CGCCGCGCAGTTT---ATACT--GAAATTCATCGCATGTT--AGTTTTCTTGGGACATTAGATGTCGGTCCATAAATAAAGCTG-TTCGTCAG-CCCGTAACAATTAGGC-AACTCATATTTTGTTT------CC------GATTCAG-TAGATGACATCCCATTG----------ACGT-A------CAAACGTTTCCAATGATGTTGGTTGCTTACTAATCGA--AT------ATGTGAGAACTT--------TTACAGCGATATAGGCCTATCTATTGCTTTTCAGAGTAATCATCAATAG-GATGCTTTACAAT
gi|4 : gaccatgcgtcaataaacgttactactatttgcatagtacGCTGGTTTGTCAGTCCCGAAACGATTAGGCCTACTCATATTTTGTTTTAACAGCC------GATTCAGATGAATGACATCTCATTGTTTACATTTTACATCAGTCACTCAAACTTTTCCAGTGACGTTGGTTGCTGACTAATC-A--AT------AT---------TGAGAACTTTCACAG---TTCA--CCTATCTATCATTTTTCAGAGTAATCATCTACAG-AATGCTTTACAGTTTACCAACATTACAAT---AAAAAGT-TGATTTTAAACTCTTAAAAAGAGGTATTTAGAACTGGAGGCTAATG--TTACCTATATAATAAAAATTAACAACATAATGCTCGAGGGCCTGCGTAGCTCAGTCAGTAGCG
gi|5 : ACGCAAAATGTAACATTATTATTAT------GCT-------AAGTGTC--T-AATGTGCA--TTA---CAAACAC-CA-CC-ACTTTGA-TGAG---G-CGAAGTCCATTTTTGAG--TAT------TT-TAAAACATCGACAGGCTTGCCTCTG--TCTCATA-AAAT-CGCCGCGCAGTTTT--ATACT--GAGATTCATCGCATGTTT-AGTTT----------TTA---------------ATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGC-TACTCATATTTTGTTT------CT------GATTCAGACGAATGACATCACATT
gi|6 : tggactatacgtcaaaccctgactactattttggcagtgtacAATAC-TA-CC-ACTTCGAGTG-GTTCGGCCAAGTCCAGTTTTGAA--TATATAAATTTGTAAAACATCGACAGGCTTGCTACTGTCCCTCATG-AAATACGCCGAGCAGTTCC--ATACT--GAATTTTATCGCATGTTT-AGTTTTCTT-GGATATTAGATGTTGGT-----AATAAAGCTGGTTCGTCAGACCCGAAA
gi|7 : t------TT-TAAAACATCGACAAGCTTGCCTCTG--TCTCATA-AAAT-CACCGCGCAGTTTTAAATACT--GAAATTCATCACATGTTT-AGTTTTCTTGGGACATTAGATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACAAta
gi|8 : tagnnnnnnnnnnnnnnnnnnnnnnnnnTTTACAATTTACCAGCATTACAAT---AAAAAGTGTAT-TTTAAACTCTTAAAAACGGTTATTTAGAACTGGGGGCCAATGTTTTAACTATATAATAAAAATTAACTACGTCATGCTCGTTGGCCTGCCTAGCTTAGTCGGT
gi|9 : ACGCAAAATGTAACATTATTATTATTA----GCT-------GAGTGTCCAT-AATGAGAATGTTATACAAAATAA-CA-TC-Ac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GGCGTCAAAACCCAGACTACTATTTTGGCAAATTACACACAAATTGTAACATTATTATATTAT
Unaligned ( gi|13 ): CAATTGCATCAAACCACTGACTACTATTTTGGCATAGTACACGCAAAATGTAACTTATTATA