lowQualScore : 22222222222222222222222222222222222222222222222
lowQualScore : 111111111111111111 88888888888888888888888888888888888888888888888 11111111111
lowQualScore : 6 111111111111111111 44 333 2 2 66666666666666666666666666666666666666666666666 5555 2 33 11111111111 7
lowQualScore : . .................. .. ... . . ............................................... .... . .. ........... .
lowQualScore : 7 333333333333333333 99 999 2 2 44444444444444444444444444444444444444444444444 3333 5 44 99999999999 5
consensus : NATAATCTCAGC-GAGATTC-----------GTC----GAGGCTAAATATTTGG-ACTGGT---C-GCCTC-T-----TCTCGGACAAGTGGNAAC---CAGT------A-GC----AGTCCAAATATTTAGCCT----C-GA--C-----------GAATCTC-GCTGAGATTAGG
Reference ( gi|1 ) : CATAATCTCAGC-GAGATTC-----------GTC----GAGGCTAAATATTTGA-ACTGGT---C-GCCTC-TCCGAATCTCAGACAAGTGGAAATATGCAGTGAAAAAAAGCAGGGAGCCCAAATATTTAGCCT----C-GA--C-----------GAATCTC-ACTGAGATTAGG
gi|2 : ATAATCTCAGCAGAGATTC-----------GGC----TCGGTTGGATATCC-A-GCTGA------GTCT------AATCTCA
gi|16 : aaactcaataagaactagaTAATCTCAGC-AGGATTC-----------GTC----GAGGTTAAATATTTGG-ACTGGT---C-GCCTC-tgaaggcttcaatccaaatagccaggccagccgagtcttagccgagattaaaacta
gi|15 : TAATCTCAGC-GAGATTC-----------GTC----GAGACTAAATATTTGG-ACTGGG---C-GTCTC-
gi|5 : TAATCTCAGT-GAGATCT-----------GTC----GAGGCTAAAT-TTTGG-ACTGGT---C-ACCAC-T-------TCAG--AAGTGGCAA
gi|5 : tgtaatttcagcgagattcatttgaactggTAATTTCAGC-GAGATTC----------------------------ATTTGA-ACTGGT---T-GCCAC-T-----TCT--GA--AGTGGTGAC---CAGT-----------------CCAAA-ATTTAGCCT----C-GA--C-----------AGATCTC-ACTGAGATTA
gi|6 : tgTAATTTCAGC-GAGATTC----------------------------ATTTGA-ACTGGT---T-GCCAC-T-----TCT--GA--AGTGGTGAC---CAGT-----------------CCAAA-ATTTAGCCT----C-GA--C-----------AGATCTC-ACTGAGATT
gi|4 : gTAATCTCAGC-AAGATTC-----------ATT----AAGGCTGGATATTTGG-TCTGATGTAC-GCCTC-T-------TCGGA-----AGAA----GC-GTCAAA-------------CCAAATATTCAGCCTCTGAC-AA--C-----------GGATCTT-GTTGAGATT
gi|10 : tTAATCTCAGT-GAGATTCATCTAGGCTATGTC----GAGGCTAAATATTTGG-ATTGGT---C-ACCTC-Tgca
gi|12 : aTAATCT-GGC-GAGATTC-----------GTC----AAGGCGAAATATTTGG-ACTGGT---CAGCCTC-c
gi|3 : TAATCTCGGTTGAGATTC-----------GGC----TCGGCTGGATATTGGG-ACTT-T---T-GCCTT--------------CAAGTGAAAACAC-----------AAGCTAGCAGTCCAAATATCCAGCCG----A-GC--C-----------GAATCTCAACAGAGATTAGaaa
gi|3 : atggataggaactTAATCTCTGTTGAGATTC-----------GGC----TCGGCTGGATATTTGG-ACTGCT---A-GCTTG-TGT---TTTC--AC---TTGAAG---GC-------AAAAGT------CCC-AATATCCAGCCG----A-GC--C-----------GAATCTCAACCGAGATTAAGat
gi|14 : atggataggaaTAATCTCAGT-GAGATG------------GTGA---GAGGCTAAATA-TTGG-ACTGGT---C-GCCTT-Tgat
gi|9 : TAATCTCAAT-GAGATG------------GTA----GAGGCTAAATATTGGACATT--T---A-GCCTC-T
gi|11 : ctgtagctagacAATCTCAGC-GAGATTC-----------GTT----GAGATTAAATGTTTGG-ACTGGT---C-GCCTC-TTCGAaccatc
gi|6 : AATCTCAGT-GAGATCT-----------GTC----GAGGCTAAAT-TTTGG-ACTGGT---C-ACCAC-T-------TCAG--AAGTGGCAA
gi|4 : gtaatttcagcgagattcatttgaactggAATCTCAAC-AAGATCC-----------GTTGTCAGAGGCTGAATATTTGG-TTTGA----C-GCTTCTTCCGAA
gi|13 : ttaatctcagcaagattcattaaggctggatatttggtctgatgtacgcctcAATCTTAGT-GAGATTT-----------GAC----GAGGCCAAATATTTAG-ACCGAT---C-GCCTC-Tgca
gi|8 : AATCTCAGT-AACATTT-----------GTC----AAGGCTAAATATTTGG-ACTGGT---T-GC---------ATTTTGGAC-AGTCCAAATA--CAGTtt
gi|8 : cAAAATGCAACCAGTCCAAATATTTAGCCT----T-GA--C-----------AAATGTT-ACTGAGATT
gi|11 : cAGTCCAAACATTTAATCT----C-AA--C-----------GAATCTC-GCTGAGATTggacagtccaaatacagt
gi|16 : AGTCCAAATATTTAACCT----C-GA--C-----------GAATCCT-GCTGAGATTAggtcgcctcttcga
gi|15 : AGTCCAAATATTTAGTCT----C-GA--C-----------GAATCTC-GCTGAGATTAggtcgcctc
gi|4 : AGACCAAATATCCAGCCT----T-AA--T-----------GAATCTT-GCTGAGATTAgggcgtctc
gi|12 : tAGTCCAAATATTTCGCCT----T-GA--C-----------GAATCTC-GCC-AGATTAgatgtacgcctcttcggaagaagcgtcaaaccaaatattcagcctctgacaacggatcttgttgagattgca
gi|14 : AGTCCAA-TATTTAGCCT----CTCA--C------------CATCTC-ACTGAGATTAggtcagcctcaaa
gi|13 : aaaggcgaccGTCTAAATATTTGGCCT----C-GT--C-----------AAATCTC-ACTAAGATT
gi|10 : CCAAATATTTAGCCT----C-GA--CATAGCCTAGATGAATCTC-ACTGAGATTAcgatcgcctcttt
gi|7 : aagaggtgaccaatCCAAATATCTAG-------C-GAGCT-----------GAATCTCAACCGAGATTAc
gi|9 : AATATTTAGCCT----C-TA--C-----------CA-TCTC-ATTGAGATTAGctgacgcaaccactggagcgtcagtccaaattatctagcggagctgaatctc
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 111111111111 22222222222222222222222222222222222222222222222 333333333333333333 1
lowQualScore : 5 222222222222 2 2 444 2 11111111111111111111111111111111111111111111111 2 666666666666666666 5
lowQualScore : . ............ . . ... . ............................................... . .................. .
lowQualScore : 0 111111111111 5 5 444 5 99999999999999999999999999999999999999999999999 2 000000000000000000 0
consensus : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTC-GACAAGTGGAAGC-----G--T---------C----AGTCCAAATATCCAGCCT----CGA--CGAATCTCAGCCGAGATTAGG
Reference ( family-449 ) : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCGGACAAGTGGNAAC---CAG--T-------AGC----AGTCCAAATATTTAGCCT----CGA--CGAATCTC-GCTGAGATTAGG
gi|1 : ATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGAACTGGT---C-GCCTCTCCGAATCTCAGACAAGTGGAAATATGCAG--TGAAAAAAAGCAGGGAGCCCAAATATTTAGCCT----CGA--CGAATCTC-ACTGAGATTAGG
gi|10 : cTAATCTCAGT-GAGATTCATCTAGGCTATGTC-GAGGCTAAATA-TTTGGATTGGT---C-ACCTCT-----T
gi|11 : AATCTCAGC-GAGATTC-----------GTT-GAGATTAAATG-TTTGGACTGGT---C-GCCTCT-----TCc
gi|12 : TAATCT-GGC-GAGATTC-----------GTC-AAGGCGAAATA-TTTGGACTGGT---CAGCCTCga
gi|13 : AATCTTAGT-GAGATTT-----------GAC-GAGGCCAAATA-TTTAGACCGAT---C-GCCTCT-----Taaa
gi|14 : TAATCTCAGT-GAGATG------------GTGAGAGGCTAAATA--TTGGACTGGT---C-GCCTTT-----t
gi|15 : TAATCTCAGC-GAGATTC-----------GTC-GAGACTAAATA-TTTGGACTGGG---C-GTCTC
gi|16 : TAATCTCAGC-AGGATTC-----------GTC-GAGGTTAAATA-TTTGGACTGGT---C-GCCTC
gi|2 : ATAATCTCAGCAGAGATTC-----------GGC-TCGGTTGGATA-TCCAG-CTGA------GTCTAA-----TCTC------ATGAAGGC---T----T---------C----AATCCAAATAGCCAGGCC----AGC--CGAGTCTTAGCCGAGATTA
gi|3 : aaactcaataagaactagaTAATCTCGGTTGAGATTC-----------GGC-TCGGCTGGATA-TTGGGACTT-T---T-GCCTT-------------CAAGTGAAAACA--CAAGCT-------AGC----AGTCCAAATATCCAGCCG----AGC--CGAATCTCAACAGAGATTAGaaacta
gi|4 : atggataggaactTAATCTCAGC-AAGATTC-----------ATT-AAGGCTGGATA-TTTGGTCTGATGTAC-GCCTCT-------TCGGA-----AGAAGC-----G--T---------C----AAACCAAATATTCAGCCTCTGACAA--CGGATCTT-GTTGAGATTat
gi|5 : tTAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC----AGAAGTGGCAAC------------------C----AGTTCAAAT-------------------GAATCTC-GCTGAAATTAgca
gi|6 : tgAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC----AGAAGTGGCAAC------------------C----AGTTCAAAT-------------------GAATCTC-GCTGAAATTA
gi|7 : g-GAGATTC-----------AGC-TCCGCTAGATAATTTGGACTGA----C-GCTCC---------------AGTGGTTGC-----G--T---------C----AG-CCAAATATCTAG-------CGAGCTGAATCTCAACCGAGATTA
gi|8 : AATCTCAGT-AACATTT-----------GTC-AAGGCTAAATA-TTTGGACTGGT---T-GCATTT-----T---GGACA
gi|9 : cGTCCAA-TATTTAGCCT----CTA--C-CATCTC-ATTGAGATTAGgtccaaatacagt
gi|9 : ctgtagctagaTAATCTCAAT-GAGATG------------GTA-GAGGCTAAATA--TTGGACATTT---A-GCCTCT-----atttagcctctaccatc
Alignments
lowQualScore : 111111111111 888888888888888888888888888888888888888888888888888888 444444444444444444 11
lowQualScore : 5 222222222222 2 2 444 2 999999999999999999999999999999999999999999999999999999 666666666666666666 33 2
lowQualScore : . ............ . . ... . ...................................................... .................. .. .
lowQualScore : 0 111111111111 5 5 444 5 666666666666666666666666666666666666666666666666666666 888888888888888888 77 7
consensus : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTC--A-AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAGCC------GA--CGAATCTCAGCCGAGATTAGG
Reference ( family-449 ) : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTC-GACAAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAGCCT----CGA--CGAATCTCAGCCGAGATTAGG
gi|1 : ATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGAACTGGT---C-GCCTCTCCGAATCTCAGACAAGTGGAAATATG------CAGTGAAAAAAAGCAGGGAGCCCAAATATTTAGCCT----CGA--CGAATCTCA-CTGAGATTAGG
gi|10 : cTAATCTCAGT-GAGATTCATCTAGGCTATGTC-GAGGCTAAATA-TTTGGATTGGT---C-ACCTCT-----T
gi|11 : AATCTCAGC-GAGATTC-----------GTT-GAGATTAAATG-TTTGGACTGGT---C-GCCTCT-----TCc
gi|12 : TAATCT-GGC-GAGATTC-----------GTC-AAGGCGAAATA-TTTGGACTGGT---CAGCCTCga
gi|13 : AATCTTAGT-GAGATTT-----------GAC-GAGGCCAAATA-TTTAGACCGAT---C-GCCTCT-----Taaa
gi|14 : TAATCTCAGT-GAGATG------------GTGAGAGGCTAAATA--TTGGACTGGT---C-GCCTTT-----t
gi|15 : TAATCTCAGC-GAGATTC-----------GTC-GAGACTAAATA-TTTGGACTGGG---C-GTCTC
gi|16 : TAATCTCAGC-AGGATTC-----------GTC-GAGGTTAAATA-TTTGGACTGGT---C-GCCTC
gi|2 : ATAATCTCAGCAGAGATTC-----------GGC-TCGGTTGGATA-TCCAG-CTGA------GTCTAA-----TCTC-A-----TGAAGGCTT-------CAAT-----------------CCAAATAGCCAGGCC----AGC--CGAGTCTTAGCCGAGATTA
gi|3 : aaactcaataagaactagaTAATCTCGGTTGAGATTC-----------GGC-TCGGCTGGATA-TTGGGACTT-T---T-GCCTT-------------CAAGTGAAAACACAAGCTAGCAGT-----------------CCAAATATCCAGCCG----AGC--CGAATCTCAACAGAGATTAGaaacta
gi|4 : atggataggaactTAATCTCAGC-AAGATTC-----------ATT-AAGGCTGGATA-TTTGGTCTGATGTAC-GCCTCT-------TC-GG-AA---GAAGCGT-------CAAA-----------------CCAAATATTCAGCCTCTGACAA--CGGATCTT-GTTGAGATTat
gi|5 : tTAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC----AGAAGTGGCAAC---------CAGT-----------------TCAAAT-------------------GAATCTC-GCTGAAATTAgca
gi|6 : tgAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC----AGAAGTGGCAAC---------CAGT-----------------TCAAAT-------------------GAATCTC-GCTGAAATTA
gi|7 : g-GAGATTC-----------AGC-TCCGCTAGATAATTTGGACTGA----C-GCTCC---------------AGTGGTTGCGT-------CAG------------------CCAAATATCTAGC-------GAGCTGAATCTCAACCGAGATTA
gi|8 : AATCTCAGT-AACATTT-----------GTC-AAGGCTAAATA-TTTGGACTGGT---T-GCATTT----------------TGGA------------CAGT-----------------CCAAATA
gi|9 : cTAATCTCAAT-GAGATG------------GTA-GAGGCTAAATA--TTGGACATTT---A-GCCTCT-----cagt
Alignments
lowQualScore : 111111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 5 222222222222 2 2 444 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777 33 2
lowQualScore : . ............ . . ... . ............................................................................... .. .
lowQualScore : 0 111111111111 5 5 444 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000 77 7
consensus : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCG---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
Reference ( family-449 ) : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCA---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
gi|1 : ATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGAACTGGT---C-GCCTCTCCGAATCTCAGACAAGTGGAAATATG------CAGTGAAAAAAAGCAGGGAGCCCAAATATTTAG-CCT----C-GA--CGAATCTCA-CTGAGATTAGG
gi|10 : cTAATCTCAGT-GAGATTCATCTAGGCTATGTC-GAGGCTAAATA-TTTGGATTGGT---C-ACCTCT-----T
gi|11 : AATCTCAGC-GAGATTC-----------GTT-GAGATTAAATG-TTTGGACTGGT---C-GCCTCT-----TCc
gi|12 : TAATCT-GGC-GAGATTC-----------GTC-AAGGCGAAATA-TTTGGACTGGT---CAGCCTCga
gi|13 : AATCTTAGT-GAGATTT-----------GAC-GAGGCCAAATA-TTTAGACCGAT---C-GCCTCT-----Taaa
gi|14 : TAATCTCAGT-GAGATG------------GTGAGAGGCTAAATA--TTGGACTGGT---C-GCCTTT-----t
gi|15 : TAATCTCAGC-GAGATTC-----------GTC-GAGACTAAATA-TTTGGACTGGG---C-GTCTC
gi|16 : TAATCTCAGC-AGGATTC-----------GTC-GAGGTTAAATA-TTTGGACTGGT---C-GCCTC
gi|2 : ATAATCTCAGCAGAGATTC-----------GGC-TCGGTTGGATA-TCCAG-CTGA------GTCTAA-----TCTCA------TGAAGGCTT-------CAAT-----------------CCAAATAGCCAGGC------CAGC--CGAGTCTTAGCCGAGATTA
gi|3 : aaactcaataagaactagaTAATCTCGGTTGAGATTC-----------GGC-TCGGCTGGATA-TTGGGACTT-T---T-GCCT---------TCA---A-GTGAAAACACAAGCTAGCAGT-----------------CCAAATATCCAG-C------C-GAGCCGAATCTCAACAGAGATTAGaaacta
gi|4 : atggataggaactTAATCTCAGC-AAGATTC-----------ATT-AAGGCTGGATA-TTTGGTCTGATGTAC-GCCTCT-----TCGGA---A----GAAGCGT-------CAAA-----------------CCAAATATTCAG-CCTCTGAC-AA--CGGATCTT-GTTGAGATTat
gi|5 : tTAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC-AG---AAGTGGCAAC---------CAGT-----------------TCAAAT---------------------GAATCTC-GCTGAAATTAgca
gi|6 : tgAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC-AG---AAGTGGCAAC---------CAGT-----------------TCAAAT---------------------GAATCTC-GCTGAAATTA
gi|7 : g-GAGATTC-----------AGC-TCCGCTAGATAATTTGGACTGA----C-GCTCC---------------AGTGGTTGCGT-------CAG------------------CCAAATATCTAG--------C-GAGCTGAATCTCAACCGAGATTA
gi|8 : AATCTCAGT-AACATTT-----------GTC-AAGGCTAAATA-TTTGGACTGGT---T-GCATTT-----T-----------GGA------------CAGT-----------------CCAAATA
gi|9 : cTAATCTCAAT-GAGATG------------GTA-GAGGCTAAATA--TTGGACATTT---A-GCCTCT-----cagt
Alignments
lowQualScore : 111111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 5 222222222222 2 2 444 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666 33 2
lowQualScore : . ............ . . ... . ............................................................................... .. .
lowQualScore : 0 111111111111 5 5 444 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777 77 7
consensus : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCG---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
Reference ( family-449 ) : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCG---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
gi|1 : ATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGAACTGGT---C-GCCTCTCCGAATCTCAGACAAGTGGAAATATG------CAGTGAAAAAAAGCAGGGAGCCCAAATATTTAG-CCT----C-GA--CGAATCTCA-CTGAGATTAGG
gi|10 : cTAATCTCAGT-GAGATTCATCTAGGCTATGTC-GAGGCTAAATA-TTTGGATTGGT---C-ACCTCT-----T
gi|11 : AATCTCAGC-GAGATTC-----------GTT-GAGATTAAATG-TTTGGACTGGT---C-GCCTCT-----TCc
gi|12 : TAATCT-GGC-GAGATTC-----------GTC-AAGGCGAAATA-TTTGGACTGGT---CAGCCTCga
gi|13 : AATCTTAGT-GAGATTT-----------GAC-GAGGCCAAATA-TTTAGACCGAT---C-GCCTCT-----Taaa
gi|14 : TAATCTCAGT-GAGATG------------GTGAGAGGCTAAATA--TTGGACTGGT---C-GCCTTT-----t
gi|15 : TAATCTCAGC-GAGATTC-----------GTC-GAGACTAAATA-TTTGGACTGGG---C-GTCTC
gi|16 : TAATCTCAGC-AGGATTC-----------GTC-GAGGTTAAATA-TTTGGACTGGT---C-GCCTC
gi|2 : ATAATCTCAGCAGAGATTC-----------GGC-TCGGTTGGATA-TCCAG-CTGA------GTCTAA-----TCTCA------TGAAGGCTT-------CAAT-----------------CCAAATAGCCAGGC------CAGC--CGAGTCTTAGCCGAGATTA
gi|3 : aaactcaataagaactagaTAATCTCGGTTGAGATTC-----------GGC-TCGGCTGGATA-TTGGGACTT-T---T-GCCT---------TC----AAGTGAAAACACAAGCTAGCAGT-----------------CCAAATATCCAG-C------C-GAGCCGAATCTCAACAGAGATTAGaaacta
gi|4 : atggataggaactTAATCTCAGC-AAGATTC-----------ATT-AAGGCTGGATA-TTTGGTCTGATGTAC-GCCTCT-----TC-GG---AA---GAAGCGT-------CAAA-----------------CCAAATATTCAG-CCTCTGAC-AA--CGGATCTT-GTTGAGATTat
gi|5 : tTAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC-AG---AAGTGGCAAC---------CAGT-----------------TCAAAT---------------------GAATCTC-GCTGAAATTAgca
gi|6 : tgAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC-AG---AAGTGGCAAC---------CAGT-----------------TCAAAT---------------------GAATCTC-GCTGAAATTA
gi|7 : g-GAGATTC-----------AGC-TCCGCTAGATAATTTGGACTGA----C-GCTCC---------------AGTGGTTGCGT-------CAG------------------CCAAATATCTAG--------C-GAGCTGAATCTCAACCGAGATTA
gi|8 : AATCTCAGT-AACATTT-----------GTC-AAGGCTAAATA-TTTGGACTGGT---T-GCATTT-----T-----------GGA------------CAGT-----------------CCAAATA
gi|9 : cTAATCTCAAT-GAGATG------------GTA-GAGGCTAAATA--TTGGACATTT---A-GCCTCT-----cagt
blockSeqs : A CATCTAGGCTAT A A GTA A TCAAGTGAAAACACAAGCTAGCAGTCCAAATATCCAGCCGAGC AG C
blockSeqs : T C . . . . TCGGAAGAAGCGTCAAACCAAATATTCAGCCTCTGACAA AA A
blockSeqs : . C . . . . TCTCATGAAGGCTTCAATCCAAATAGCCAGGCCAGC AA T
blockSeqs : . T . . . . AGTGGTTGCGTCAGCCAAATATCTAGCGAGC G T
blockSeqs : . C . . . . TCAGAAGTGGCAACCAGTTCAAAT G T
blockSeqs : . C . . . . TCAGAAGTGGCAACCAGTTCAAAT G C
blockSeqs : . C . . . .
blockSeqs : . C . . . .
blockSeqs : . C . . . .
blockSeqs : . T . . . .
blockSeqs : . T . . . .
blockSeqs : . C . . . .
blockSeqs : . T . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCG---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
finalCons : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCG---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
Alignments
lowQualScore : 111111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 5 222222222222 2 2 444 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666 33 2
lowQualScore : . ............ . . ... . ............................................................................... .. .
lowQualScore : 0 111111111111 5 5 444 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777 77 7
consensus : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCG---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
Reference ( family-449 ) : NATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGGACTGGT---C-GCCTCT-----TCTCG---AAGTGGAAGCGT-------CAGT-----------------CCAAATATCCAG-C------C-GA--CGAATCTCAGCCGAGATTAGG
gi|1 : ATAATCTCAGC-GAGATTC-----------GTC-GAGGCTAAATA-TTTGAACTGGT---C-GCCTCTCCGAATCTCAGACAAGTGGAAATATG------CAGTGAAAAAAAGCAGGGAGCCCAAATATTTAG-CCT----C-GA--CGAATCTCA-CTGAGATTAGG
gi|10 : cTAATCTCAGT-GAGATTCATCTAGGCTATGTC-GAGGCTAAATA-TTTGGATTGGT---C-ACCTCT-----T
gi|11 : AATCTCAGC-GAGATTC-----------GTT-GAGATTAAATG-TTTGGACTGGT---C-GCCTCT-----TCc
gi|12 : TAATCT-GGC-GAGATTC-----------GTC-AAGGCGAAATA-TTTGGACTGGT---CAGCCTCga
gi|13 : AATCTTAGT-GAGATTT-----------GAC-GAGGCCAAATA-TTTAGACCGAT---C-GCCTCT-----Taaa
gi|14 : TAATCTCAGT-GAGATG------------GTGAGAGGCTAAATA--TTGGACTGGT---C-GCCTTT-----t
gi|15 : TAATCTCAGC-GAGATTC-----------GTC-GAGACTAAATA-TTTGGACTGGG---C-GTCTC
gi|16 : TAATCTCAGC-AGGATTC-----------GTC-GAGGTTAAATA-TTTGGACTGGT---C-GCCTC
gi|2 : ATAATCTCAGCAGAGATTC-----------GGC-TCGGTTGGATA-TCCAG-CTGA------GTCTAA-----TCTCA------TGAAGGCTT-------CAAT-----------------CCAAATAGCCAGGC------CAGC--CGAGTCTTAGCCGAGATTA
gi|3 : aaactcaataagaactagaTAATCTCGGTTGAGATTC-----------GGC-TCGGCTGGATA-TTGGGACTT-T---T-GCCT---------TC----AAGTGAAAACACAAGCTAGCAGT-----------------CCAAATATCCAG-C------C-GAGCCGAATCTCAACAGAGATTAGaaacta
gi|4 : atggataggaactTAATCTCAGC-AAGATTC-----------ATT-AAGGCTGGATA-TTTGGTCTGATGTAC-GCCTCT-----TC-GG---AA---GAAGCGT-------CAAA-----------------CCAAATATTCAG-CCTCTGAC-AA--CGGATCTT-GTTGAGATTat
gi|5 : tTAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC-AG---AAGTGGCAAC---------CAGT-----------------TCAAAT---------------------GAATCTC-GCTGAAATTAgca
gi|6 : tgAATCTCAGT-GAGATCT-----------GTC-GAGGCTAAAT--TTTGGACTGGT---C-ACCACT-----TC-AG---AAGTGGCAAC---------CAGT-----------------TCAAAT---------------------GAATCTC-GCTGAAATTA
gi|7 : g-GAGATTC-----------AGC-TCCGCTAGATAATTTGGACTGA----C-GCTCC---------------AGTGGTTGCGT-------CAG------------------CCAAATATCTAG--------C-GAGCTGAATCTCAACCGAGATTA
gi|8 : AATCTCAGT-AACATTT-----------GTC-AAGGCTAAATA-TTTGGACTGGT---T-GCATTT-----T-----------GGA------------CAGT-----------------CCAAATA
gi|9 : cTAATCTCAAT-GAGATG------------GTA-GAGGCTAAATA--TTGGACATTT---A-GCCTCT-----cagt