lowQualScore : 111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 777 777777777777777777777777777777777777777777777777777777777777 1 1 1 1 1 1 33 444 1 1 2222222222222222222222222222222 6666666666 1 1 1 1 1 2222 5555555555 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 11 1 7777777777777777777777777777777777777777777777777777
lowQualScore : 000 6 444444444444444444444444444444444444444444444444444444444444 6 5 5 5 5 5 7 44 6 6 6 000 5 7 3333333333333333333333333333333 2222222222 6 7 5 5 7 7 0000 3333333333 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 8 55 0 3 2 44 1 4 888 0 4 8 3333333333333333333333333333333333333333333333333333 0 3 1 99 3 3
lowQualScore : ... . ............................................................ . . . . . . . .. . . . ... . . ............................... .......... . . . . . . .... .......... . .................................................................................................................................................................................................................................................................................. . . .. . . . .. . . ... . . . .................................................... . . . .. . .
lowQualScore : 000 0 000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0 00 0 0 0 000 0 0 0000000000000000000000000000000 0000000000 0 0 0 0 0 0 0000 0000000000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 66 4 0 1 00 7 1 333 2 0 0 9999999999999999999999999999999999999999999999999999 7 3 0 22 3 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCCATTCGAACAAACACACTTGAATC-CTCTCTTTCCAAAGATACC---TAAGTTT--GTTTGCAATGTCCCAG-GGCTATTTAGAACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCCTATGTTAAACT---AT----TATTGAAATCCCA-----CA--GAGGTCATCAACTATAC-AGACTTGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCC-TATGTTAAACT---AT---TATTGAAATCCCA---------CAGAGGTC-ATCAACT--ATACAGACTTGATTCAACATTAT--------GTTTCCTTGTACGTGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGNNGNTAATTTAAATGACGT-ACCCTATCT----ATTTCCAGTGTATAGGNCGTCTCCNNTTGGAAAAANGGGATGCNTCTGGCCACCTCATTCGAACATGAACACACTTGAATCCCTTTAC-CCAAGGATN-ATTTGT-GC--AAG-TTTGGCTG-AAATTGGCNCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA---G--T-T----A-C-GAC---GAC-GACAA--GAC-G---AC-GA-A---ACGGACAAAT-TTTGATCAGAAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Reference ( gi|1 ) : ATATAAAGTTTATCAGGCTTTTTTCCTGGCCCCTAGTAATAGAGTCTCTTTGAGAGAATACTTAGAAGAGAGACTTTACTATAGATTTGCCTTCCATATATTCTGCATTGTAAAAGACTCTTCGTGATCCCCAATTAATTAACATGTGCGGTCCATCGTATAACCTTTGCCTTGGGTGTCATG---ATTTGAACAAAC----TTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTC--TG-GCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAAGATTTTTAAAGATTTCTCCCTATATTATCATATGTAAAACTTTGATCCCCTATTGTGGCCCCATCGTCCATTGAGGTCATGACTTGAACAAAACTTGAATCTCTCTAATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAGATTTTTTAAAGATTTTTCCTCTATAATCTATATGTCAAACTTTGATCCCTATTGGGGCCCCATTGTTACCCCCGGGGTCCATTGATTTGA-ACACACTTGAATCT-CACTATATAAGGAAGCTTCCATATA----AATTTCAGCTTTTCTGGTCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGACACCACCCTATTTTTGCATTTT---TGT---GATTATCTCCCTTTGA-----TGAGG-GCCT--GGCC-TTTCATTAGAACA--AA-----TTGAAGCCCCTCAC-CCAAGGATG-ATGTGTTAC--AAG-TTTGGTTG-AATTTGGCCCAGCGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA---G--T-T----A-C-GAC---GAC-GACAA-CGAC-G---AC-GA-A---ACGGACAAAT-TTTGATCAGAAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|3 : CATGGCCATTCGAACAAACACACTTGAATC-CTCTCTTTCCAAAGATACC---TAAGTTT--GTTTGCAATGTCCCAG-GGCTATTTAGAACAAG
gi|2 : gaagataatttaaataacgtaccctatttatttcttaaaatctccagttggaaggagTTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCCTATGTTAAACT---AT----TATTGAAATCCCA-----CA--GAGGTCATCAACTATAC-AGACTTGATTCttgaaattgtgac
gi|2 : TTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCC-TATGTTAAACT---AT---TATTGAAATCCCA---------CAGAGGTC-ATCAACT--ATACAGACTTGATTCAACATTAT--------GTTTCCTTGTACGTGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGTTATT--TTTAAATG-------CTTATCT----ATTTTCAGTGTATAGGTCGTCTCCCCTTGAAAAAATGGGATGCCTCTGGCCACCTCA----AACATGAA-----TT----CTCTTTAC-ACAAGAATT-ATTTAT-GC--AATCTTTAGTTG-ATATTGAACCAGTGG--------AAGAAGATGGAAATGTG-A-aacattatgtttccttgtacgtgaaggacaatatgggccatggttcttgaagttatttttaaatgcttatctattttcagtgtataggtcgtctccccttgaaaaaatgggatgcctctggccacctcaaacatgaattctctttacacaagaattatttatgcaatctttagttgatattgaaccagtggaagaagatggaaatgtgagtt
gi|3 : GAAGATAATTTAAATAACGT-ACCCTATTT----ATTTC---T-T---AAA-ATCTCCAGTTGG-----AAGGA-GCAT--GGCC-----ATTCGAACA--AACACACTTGAATCCTCTCTTTCCAAAGAT---------ACCTAAG-TTTGTTTGCAAT--GTCCCAG-GGCTATTTAGAACAAGTTGAAATTGTG-A-gtt
gi|4 : CCTTTAC-CTAAGGATACAT-TGAGGC--AAG-TCTGGCTG-AAACTGACAAAGTAGATTTTGG--AGAAATCGAAAATGTG---AA---G--T-T----ATC-GATTCGGAC-GACAA-GGCA-G---A---A-A---ATGGACAAAC-TACAGTTAGAAAA-CT---ACTTTGAGCACACGACTGAAGTGc
gi|12 : AC-TCAAGTCTG-ATTTGT-AC--GAG-TTTAGCTG-AAATCGATCCATTGGTTCTTAAGAAGA--CTGAAAAGGT
gi|6 : TG-AAATTGGCACAATGGTTCTGGAGAAGAAATCAAAAACATG-A-AAAGGG--CAT----A-C-GGA---GA--GACAATCAAC-A---AC-
gi|7 : TGGCACAGTGGTTTTTAAAAAGA---TGAAATTGTA-A-AAC--A--T-TG---A-CAGAC---GAC-GGCA---GAA-G---ACAGA-A---A---ACAAAA-TT-AATCAGAAAAGCT--TA--------CTTCGGCTCAagctcactgaagtttttaattcaagtgagctaaa
gi|9 : GGTTTAGAGGT-CTTGA-AAGAAATTGAAAATGTGAA-AA---G--T--------C-AAT---GGC--AGAT-CTAT-G---AC--A-A---ACAAAC---T-TTTATTCAGAAAAATT--TAC-CTGAGC
gi|10 : TCTGGAGAAGAATATAAAAATGTG-AGAA---G--T-TT---A-C-AAT---GCT-GACA-------G---TC----A---ATGGACAAAT-TTTGATCAGGAAACCC--CAC-TTGGGCCTTCAGC
gi|11 : CTGGAGAAGAATATGAACATATG-A-AA---AGTT-T----A-C-AAC---AAC-AACGA-AGAC-GCCAAT-GACG---ACGAACACAT-TTTGATCAGAAAAGCT--CAC-TTG
gi|5 : GATGAAGTTGAAA-TATG-A-AGC--G--T-TTTAAA-CAGTCA--GACAGATA---GGCAG---AC-GA------CGGACATAA-TACGATCCGAAAAGCT--CAC-TTAAACCTTC
gi|8 : attcatcccagacccccggtaccattTGAAAATGTA-ATAA---A---------A-T-GAT---GAC---CAN-NNNN-N---NN-NN-N---NNNNNNNNNN-NNNNACCAAAAAAGCT--CAC-TTGAGCTTTCAGCTCATGTGAtgatgagcaa
gi|13 : cGAC-G---AC-AA-ATGAACAGATAAACCTTTGACTGGAAAAGGT--CAC-TACAGCTTATTGCTCAGGTGAtcta
gi|16 : -A---AAGGACACAT-TTTGATCAAAAA--TT--CAC-TTGAGTGTTCGTCTCAGGTGAact
gi|15 : ac-A---ACGAACAAAT-CTTGATCA-AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgcta
gi|14 : -A---ACGAACAAAT-CTTGATCA-AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgctcaaa
gi|17 : AAT-TTTCATGAGAAATGCT--CCC-TTGAACCTTAGGCTCAGGTGgctcaaa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222
lowQualScore : 222 2222 2 333 22 11 1 2 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 1 33 444 1 1 2222222222222222222222222222222 55555555555555555555555555555555555555555555555555555555555555555555555555555 2 55555555 888888888 2 3333 11 77777777 2222 4444 2222 22 33 22222 2222 555555555555555 444444444444 111 333333333 666666666 1 11111 55555555555555555555555555555555555555555555555555
lowQualScore : 000 3333 0 2 4 2 3 4 555 77 2 88 3 5 0 3 3 2 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 5 7 44 6 6 6 000 5 7 3333333333333333333333333333333 77777777777777777777777777777777777777777777777777777777777777777777777777777 2 3 4 4 4 3 4 0 22222222 000000000 3 0 4444 2 4 99 22222222 4 3333 999 2222 3 2 2222 77 22 1 00 66666 0 8888 777777777777777 22 000000000000 999 222222222 000000000 0 99 77777 8 0 1 2 33 55 3 3 44444444444444444444444444444444444444444444444444 2 0 44 2 33 77 2 0
lowQualScore : ... .... . . . . . . ... .. . .. . . . . . . ............................................................................................................................................... . . . .. . . . ... . . ............................... ............................................................................. . . . . . . . . ........ ......... . . .... . . .. ........ . .... ... .... . . .... .. .. . .. ..... . .... ............... .. ............ ... ......... ......... . .. ..... . . . . .. .. . . .................................................. . . .. . .. .. . .
lowQualScore : 000 5555 0 5 0 5 0 0 000 55 5 55 0 0 0 0 0 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0 0 000 0 0 0000000000000000000000000000000 00000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 0 0 0 00000000 000000000 0 0 0000 5 0 55 55555555 0 0000 000 5555 0 5 0000 55 00 0 77 77777 7 3333 000000000000000 00 333333333333 777 333333333 000000000 0 00 00000 0 1 0 2 88 11 6 6 44444444444444444444444444444444444444444444444444 9 5 99 9 44 99 9 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCCATTCGAACAAACACACTTGAATCTCTCTNTNTCCGAAGNTNCCATATAAGTTTCAGCTTNCAATGNCCCAGTGGCTNTTNAGAANAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAAGATTTTTAAAGATTTCTCCCTATATTATCATATGTAAAACTTTGATCCCCTATTGTGGCCCCATCGTCCATTGAGGTCATGACTTGAACAAAACTTGAATCTCTCTAATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGANAAGAANATNTTTNAAGGANTTTTCCTNCACANTCCATATGTCAAACTTTGATCCCTATTGGGGCCCCATTGTTACCCCNGGGGTCCATCGACTTGATACANACTTGANTCNACACTATATAAGGAAGCTTCCNTGTACGTGAANNNCAGCTTTTNTGGNCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGACGC-ACCCTATTT----ATTTTC--TGT-TAGATCGTCTCCCNTTGGAA--ATGGGA-GC-TCTGGCCACCTCATT-GAACA--AAC----TTGAATCC-CTTTACCCAAGGATG-ATTTGT-GCAA-GTTTGGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Reference ( family-274 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCCATTCGAACAAACACACTTGAATC-CTCTCTTTCCAAAGATACC---TAAGTTT--GTTTGCAATGTCCCAG-GGCTATTTAGAACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCCTATGTTAAACT---AT----TATTGAAATCCCA-----CA--GAGGTCATCAACTATACAGA-CTTGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCC-TATGTTAAACT---AT---TATTGAAATCCCA---------CAGAGGTC-ATCAACT--ATACAGACTTGATTCAACATTAT--------GTTTCCTTGTACGTGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGNNGNTAATTTAAATGACGT-ACCCTATCT----ATTTCCAGTGTATAGGNCGTCTCCNNTTGGAAAAANGGGATGCNTCTGGCCACCTCATTCGAACATGAACACACTTGAATCC-CTTTACCCAAGGATN-ATTTGT-GCAA-GTTTGGCTGAAATTGGCNCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|1 : CATG---ATTTGAACAAAC----TTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTC--TGGCC-AGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAAGATTTTTAAAGATTTCTCCCTATATTATCATATGTAAAACTTTGATCCCCTATTGTGGCCCCATCGTCCATTGAGGTCATGACTTGAACAAAACTTGAATCTCTCTAATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAGATTTTTTAAAGATTTTTCCTCTATAATCTATATGTCAAACTTTGATCCCTATTGGGGCCCCATTGTTACCCCCGGGGTCCATTGATTTGA-ACACACTTGAATCT-CACTATATAAGGAAGCTTCCATATA----AATTTCAGCTTTTCTGGTCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGACACCACCCTATTTTTGCATTTT---TGT---GATTATCTCCCTTTG-----ATGAGG-GC--CTGGCC-TTTCATTAGAACA--AA-----TTGAAGCC-CCTCACCCAAGGATG-ATGTGTTACAA-GTTTGGTTGAATTTGGCCCAGCGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AACGAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|10 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaatacttagaagagagactttactatagatttgccttccatatattctgcattgtaaaagactcttcgtgatccccaattaattaacatgtgcggtccatcgtataacctttgccttgggtgtTCTGGAGAAGAATATAAAAATGTG-AGAA-G--TTT---A-C-AAT---GCT-GAC--A------G---TC----A---ATGGACAAAT-TTTGA-TCAG-GAAACCC--CAC-TTGGGCCTTCAGC
gi|11 : CTGGAGAAGAATATGAACATATG-A-AA-AGTTT----A-C-AAC---AAC-AACG-AA-GAC-GCCAAT-GACG---ACGAACACAT-TTTGA-TCAG-AAAAGCT--CAC-TTG
gi|12 : ACTCAAGTCTG-ATTTGT-ACGA-GTTTAGCTGAAATCGATCCATTGGTTCTTAAGAAGA--CTGAAAAGGT
gi|13 : -GAC-G---AC-AA-ATGAACAGATAAACCTTTGA-CTGG-AAAAGGT--CAC-TACAGCTTATTGCTCAGGTGA
gi|14 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAact
gi|15 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgctcaaa
gi|16 : -A---AAGGACACAT-TTTGA-TCAA-AAA--TT--CAC-TTGAGTGTTCGTCTCAGGTGAgctcaaa
gi|17 : acAAT-TTTCA-TGAG-AAATGCT--CCC-TTGAACCTTAGGCTCAGGTGgcta
gi|2 : TTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCC-TATGTTAAACT---AT---TATTGAAATCCCA---------CAGAGGTC-ATCAACT--ATACAGACTTGATTCAACATTAT--------GTTTCCTTGTACGTGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGTTATT--TTTAAATG-------CTTATCT----ATTTTCAGTGTATAGGTCGTCTCCCCTTGAAAAAATGGGATGCCTCTGGCCACCTCA----AACATGAAT---------TCT-CTTTACACAAGAATT-ATTTAT-GCAATCTTTAGTTGATATTGAACCAGTG--------GAAGAAGATGGAAATGTG-A-
gi|3 : GAAGATAATTTAAATAACGT-ACCCTATTT----ATTTCT------TAAAA--TCTCCAGTTGGAA-----GGA-GCAT--GGCCA-----TTCGAACA--AACACACTTGAATCCTCTCTTTCCAAAGATA-CCT------AA-GTTTGTTTGCAAT-GTCCCAG-GGCTATTTAGAACAAGTTGAAATTGTG-A-gtt
gi|3 : CATGGCCATTCGAACAAACACACTTGAATC-CTCTCTTTCCAAAGATACC---TAAGTTT--GTTTGCAATGTCCCAG-GGCTATTTAGAACAAGc
gi|4 : gaagataatttaaataacgtaccctatttatttcttaaaatctccagttggaaggagC-CTTTACCTAAGGATACATTGAG-GCAA-GTCTGGCTGAAACTGACAAAGTAGATTTT--GGAGAAATCGAAAATGTG---AA-G--TT----ATC-GATTCGGAC-GAC--AA-GGCAG---A---A-A---ATGGACAAAC-TACAG-TTAG-AAAA-CT---ACTTTGAGCACACGACTGAAGTGttgaaattgtgac
gi|5 : GATGAAGTTGAAA-TATG-A-AGCG--TTTTAAA-CAGTCA--GACAGAT--AG-GCA-G---AC-GA------CGGACATAA-TACGA-TCCG-AAAAGCT--CAC-TTAAACCTTC
gi|6 : attcatcccagacccccggtaccattTGAAATTGGCACAATGGTTCTGGAGAAGAAATCAAAAACATG-A-AA----------A-G-GGC-------------A-TAC-G------GA-G---A--GACA--------A-TCAACAACAGCT--CAC-TGAAGTTTTTAATTCAAGTGAtgatgagcaa
gi|7 : TGGCACAGTGGTTTTTAAAAAGA---TGAAATTGTA-A-AACA--TTG---A-CAGAC---GAC-GGC---A-GAA-G---ACAGA-A---A---ACAAA--ATTAA-TCAG-AAAAGCT--TA--------CTTCGGCTCAgctaaa
gi|8 : TGAAAATGTA-A--------T----A-A-AAT---GAT-GACCANN-NNN-N---NN-NN-N---NNNNNNNNNN-NNNNA-CCAA-AAAAGCT--CAC-TTGAGCTTTCAGCTCATGTGA
gi|9 : cGGTTTAGAGGT-CTTGA-AAGAAATTGAAAATGTGAA-AA-G--T-----------C---AAT-GGC--AG-ATC-T---AT-G------ACAAACAAAC-TTTTATTCAG-AAAAATT--TAC-CTGAGCtcta
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 222 2222 1 222 11 11 1 1 1 2 22 22 2 2 1 4444 22 888888888 2 8888888888 1 2 1 2 1 1 1 1 1 1 11 4444444444 1 1111 444444 11 2 1 2 11 333333333 4444 1 11 3333333 1 2222 55555555555555555 000000000000000000000000000000000000000000 333333333 1 222222222222 55555555555555555555555555555555555555555555555555
lowQualScore : 000 3333 5 1 1 2 1 1 111 88 1 88 1 5 5 1 1 1 5 0 77 4 77 0 3 0 5 2222 77 4 000000000 0 2 7777777777 5 0 5 0 5 3 5 5 5 5 5 1 1 1 33 0 1 1111111111 0 7 2 6666 000000 1 88 3 2 0 7 3 1 1 66 444444444 1 0 3333 333 6 1 1 2 7 6 6 33 3333333 0 1111 88888888888888888 11 111111111111111111111111111111111111111111 111111111 0 8 333333333333 6 99 2 44 3 3 44444444444444444444444444444444444444444444444444 2 0 33 2 33 77 2 0
lowQualScore : ... .... . . . . . . ... .. . .. . . . . . . . . .. . .. . . . . .... .. . ......... . . .......... . . . . . . . . . . . . . . .. . . .......... . . . .... ...... . .. . . . . . . . .. ......... . . .... ... . . . . . . . .. ....... . .... ................. .. .......................................... ......... . . ............ . .. . .. . . .................................................. . . .. . .. .. . .
lowQualScore : 000 5555 5 0 0 5 0 0 555 00 0 55 0 0 5 0 0 0 0 0 55 0 55 0 0 0 5 5555 55 0 000000000 0 5 5555555555 5 0 5 0 0 0 5 5 5 0 5 0 0 0 00 7 0 3333333333 7 3 3 7777 333333 0 33 3 0 7 3 7 0 0 33 777777777 0 7 7777 000 7 0 0 3 3 7 7 88 8888888 0 2222 00000000000000000 22 222222222222222222222222222222222222222222 222222222 0 0 000000000000 7 22 3 00 6 6 44444444444444444444444444444444444444444444444444 9 5 22 9 44 99 9 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCCATTCGAACAAACACACTTGAATCTCTCTNTNTCCGAAGNTNCCATATAAGTTTCAGCTTNCAATGNCCCAGTGGCTNTTNAGAANAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGATTTTT-AAAGATTTTTCCT-CACA-TCC-TATGTTAAACTCTGATCCC-TATTGGGGCCCCATT-G--ACCCCCGGG--GTC-ATCGATTTGA-ACANACTTGAATCT-CACTAT-AT-AGGA-AGCTTCCATATA----AANTTCAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATTTT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-G-CCC---TGGCCATT----TCA----TC-GAAC-AA----ACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Reference ( family-274 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCCATTCGAACAAACACACTTGAATCTCTCTNTNTCCGAAGNTNCCATATAAGTTTCAGCTTNCAATGNCCCAGTGGCTNTTNAGAANAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGA-AGATTTT--TAAAGATTT--CTCCC-TATATTAT-CATATGTAAAA----CTT--TGATCCCCTATT---------GTG-GCCCCATCGT----------CCATTGAG-GTCATGACTTGAACAAAACTTGAATCTCTCTA-ATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGANAAGAANATNTTTNAAGGANTTTTCCTNCACANTCCATATGTCAAACTTTGATCCC-TATTGGGGCCCCATT-GTTACCCCNGGG--GTCCATCGACTTGATACANACTTGANTCNACACTAT-ATAAGGA-AGCTTCCNTGTACGTGAANNNCAGCTTTTNTGGNCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATTTTC--TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-G-CTC---TGGCCACC----TCA----TT-GAAC-AA----ACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TG-TGCAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|1 : CTT-AGAAGAGAGACTTTACTATAGATTTGCCTTCCATATATTCTGCAT-TGTAAAAGACTCTTCGTGATCCCCAATTAATTAACATGTGCGGTCCATCGTATAACCTTTGCC-TTGGGTGTCATGATTTGAACAAA-CTTGAATCTCTCTATATCAG-AAGCTTCCA-TATAAATTT-CAG-CTTTC-TGGCCA-GTGGTTCTTGAGAAGAAGATTTT--AAAGATTTTTCCT-----------ATATTA---TCTGATCCCCTATTGGGGCCCCATTCG--ACCCCCGGGTGGTC-AT-GATTTGA-ACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATA-----AATTCAGCTTTCCTGGGCCCAGTG-TTCTTGAGAAGAAGAT--TTTTAAAGATTT-CTCCCTATATT----ATCATA--TGT-AAAACTTTGATCCCCTATTG------TG----G-CCCCATCGTCCATTGAGGTCATGACTT-GAACAAA----ACTTGAA-TCT-CTCTAATC-AGGAAG-CCTACAA-TATAA-ATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAG
gi|1 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaataCATG---ATTTGAACAAAC----TTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTC--TGGCC-AGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGA-AGATTTT--TAAAGATTT--CTCCC-TATATTAT-CATATGTAAAA----CTT--TGATCCCCTATT---------GTG-GCCCCATCGT----------CCATTGAG-GTCATGACTTGAACAAAACTTGAATCTCTCTA-ATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAGATTTTTTAAAGATTTTTCCTCTATAATCTATATGTCAAACTTTGATCCC-TATTGGGGCCCCATT-GTTACCCCCGGG--GTCCATTGATTTGA-ACACACTTGAATCT-CACTAT-ATAAGGA-AGCTTCCATATA----AATTTCAGCTTTTCTGGTCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CACCACCCTAT-TTTTGCATTTT---TGT---GA--TTA-TCTCCCTTTG-----ATGAGG-G-C-C---TGGCC-TT----TCA----TTAGAAC-AA----A-TTGAA-GCC-CCTCACCCAAGGATG-ATG--TGTTACAA-GTTT--GGTTGAATTTGGCCCAGCGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AACGAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGAattttttaaagatttttcctctataatctatatgtcaaactttgatccctattggggccccattgttacccccggggtccattgatttgaacacacttgaatctcactatataaggaagcttccatataaatttcagcttttctggtcctattggttcttgagaagaagattttaaatgacaccaccctatttttgcatttttgtgattatctccctttgatgagggcctggcctttcattagaacaaattgaagcccctcacccaaggatgatgtgttacaagtttggttgaatttggcccagcggttcttgagaagaagttgaaaatgtgaaagttacgacgacgacaacgacgacgaaacggacaaattttgatcagaaaagctcacttgagccttcggctcaggtga
gi|10 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaatacttagaagagagactttactatagatttgccttccatatattctgcattgtaaaagactcttcgtgatccccaattaattaacatgtgcggtccatcgtataacctttgccttgggtgtTCTGGAGAAGAATATAAAAATGTG-AGAA-G--TTT---A-C-AAT---GCT-GAC--A------G---TC----A---ATGGACAAAT-TTTGA-TCAG-GAAACCC--CAC-TTGGGCCTTCAGC
gi|11 : CTGGAGAAGAATATGAACATATG-A-AA-AGTTT----A-C-AAC---AAC-AACG-AA-GAC-GCCAAT-GACG---ACGAACACAT-TTTGA-TCAG-AAAAGCT--CAC-TTG
gi|12 : ACTCAAGTCTG-ATT--TG-TACGA-GTTT--AGCTGAAATCGATCCATTGGTTCTTAAGAAGA--CTGAAAAGGT
gi|13 : -GAC-G---AC-AA-ATGAACAGATAAACCTTTGA-CTGG-AAAAGGT--CAC-TACAGCTTATTGCTCAGGTGA
gi|14 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAact
gi|15 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgctcaaa
gi|16 : -A---AAGGACACAT-TTTGA-TCAA-AAA--TT--CAC-TTGAGTGTTCGTCTCAGGTGAgctcaaa
gi|17 : acAAT-TTTCA-TGAG-AAATGCT--CCC-TTGAACCTTAGGCTCAGGTGgcta
gi|2 : TTGACAAGAATATATTTAAAGAAATTTTCCTACACATTCC-TATGTTAAACT---AT----TATTGAAATCCCA----------CAGAG--GTC-ATCAACT--ATACAGACTTGATTCAACATTAT----------GTTTCCTTGTACGTGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGTTATT--TTTAAATG--------CTTAT-CT----ATTTTCAGTGTATAGG--TCG-TCTCCCCTTGAAAAAATGGGATGCCTC---TGGCCACC----TCA--------AAC-A--------TGAATTCT-CTTTACACAAGAATT-ATT--TA-TGCAATCTTT--AGTTGATATTGAACCAGTG--------GAAGAAGATGGAAATGTG-A-
gi|3 : GAAGATAATTTAAATAA-CG-TACCCTAT-TT----ATTTC-----T-TAAA----A-TCTCCAGTTG--GAA---GGA-G-C-A---TGGCCAT------------TC-GAAC-AAACACACTTGAA-TCCTCTCTTTCCAAAGAT--ACC--T-----AA-GTTT--GTTTGCAA-TGTCCCAG-GGCTATTTAGAACAAGTTGAAATTGTG-A-gtt
gi|3 : CATGGCCATTCGAACAAACACACTTGAATC-CTCTCTTTCCAAAGATACC---TAAGTTT--GTTTGCAATGTCCCAG-GGCTATTTAGAACAAGc
gi|4 : gaagataatttaaataacgtaccctatttatttcttaaaatctccagttggaaggagC-CTTTACCTAAGGATACATT--GA-GGCAA-GTCT--GGCTGAAACTGACAAAGTAGATTTTGG--AGAAATCGAAAATGTG---AA-G--TT----ATC-GATTCGGAC-GAC--AA-GGCAG---A---A-A---ATGGACAAAC-TACAG-TTAG-AAAA-CT---ACTTTGAGCACACGACTGAAGTGttgaaattgtgac
gi|5 : GATGAAGTTGAAA-TATG-A-AGCG--TTTTAAA-CAGTCA--GACAGAT--AG-GCA-G---AC-GA------CGGACATAA-TACGA-TCCG-AAAAGCT--CAC-TTAAACCTTC
gi|6 : attcatcccagacccccggtaccattTGAAATTGGCACAATGGTTCTGGAGAAGAAATCAAAAACATG-A-AA----------A-G-GGC-------------A-TAC-G------GA-G---A--GACA--------A-TCAACAACAGCT--CAC-TGAAGTTTTTAATTCAAGTGAtgatgagcaa
gi|7 : TGGCACAGTGGTTTTTAAAAAGA---TGAAATTGTA-A-AACA--TTG---A-CAGAC---GAC-GGC--A--GAA-G---ACAGA-A---A---ACAAAA-TT-AA-TCAG-AAAAGCT--TA--------CTTCGGCTCAgctaaa
gi|8 : TGAAAATGTA-A--------T----A-A-AAT---GAT-GACCANN-NNN-N---NN-NN-N---NNNNNNNNNN-NNNNA-CCAA-AAAAGCT--CAC-TTGAGCTTTCAGCTCATGTGA
gi|9 : cTCTTGA-AAGAAATTGAAAATGTGAA-AA-G--T-----------C---AAT-GGC--AG-ATC-T---AT-G------ACAAACAAAC-TTTTATTCAG-AAAAATT--TAC-CTGAGCtcta
Alignments
lowQualScore : 777 8888 1 55555555 1 1 11 11 1 1 1 2222 11 333333333 1 4444444444 1 1 1 1 1 1 1 1 1 1 22 1 4444444444444 1 1 22 333333 11 1 1 1 1 55555555555 2222 1 11111 11 3333333 1 2222 44444444444444444444 7777777777777777777777777777777777777777777 11111 1 1111111111 55555555555555555555555555555555555555555555555555
lowQualScore : 000 6 5555 1 1 5 1 1 6 1 77777777 6 1 1 1 5 5 88 1 77 5 1 5 5 3333 77 1 999999999 5 1 1111111111 5 5 5 5 5 1 5 5 5 5 5 00 3 7777777777777 3 7 2 00 666666 88 3 2 3 6 1 3 7 66666666666 8888 4 6 66666 6 33 3333333 0 1111 99999999999999999999 11 6666666666666666666666666666666666666666666 66666 0 8 9999999999 6 99 2 44 3 3 44444444444444444444444444444444444444444444444444 2 0 33 2 33 77 2 0
lowQualScore : ... . .... . . . . . . . ........ . . . . . . .. . .. . . . . .... .. . ......... . . .......... . . . . . . . . . . . .. . ............. . . . .. ...... .. . . . . . . . ........... .... . . ..... . .. ....... . .... .................... .. ........................................... ..... . . .......... . .. . .. . . .................................................. . . .. . .. .. . .
lowQualScore : 000 0 0000 0 0 0 0 0 0 0 00000000 0 0 0 0 0 0 00 0 55 5 0 0 5 5555 55 0 000000000 0 0 0000000000 5 5 5 5 0 0 5 5 5 0 5 77 3 3333333333333 3 3 0 00 333333 33 3 0 3 7 0 3 3 00000000000 3333 0 7 00000 7 88 8888888 0 2222 00000000000000000000 22 0000000000000000000000000000000000000000000 00000 0 0 7777777777 7 22 3 00 6 6 44444444444444444444444444444444444444444444444444 9 5 22 9 44 99 9 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATG---ATTTGAACAAAC----TTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTC--TGGCC-AGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATA----AA-TTCAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Reference ( family-274 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCCATTCGAACAAACACACTTGAATCTCTCTNTNTCCGAAGNTNCCATATAAGTTTCAGCTTNCAATGNCCCAGTGGCTNTTNAGAANAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATA----AANTTCAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|1 : CTT-AGAAGAGAGACTTTACTATAGATTTGCCTTCCATATATTCTGCAT-TGTAAAAGACTCTTCGTGATCCCCAATTAATTAACATGTGCGGTCCATCGTATAACCTTTGCC-TTGGGTGTCATGATTTGAAC-AAACTTGAATCTCTCTATATCA-GAAGCTTCC-ATATAAA-TTTCAG-CTTT-CTGGCCA-GTGGTTCTTGAGAAGAAGA--TTTTAAAGAT-TTT-----------T-CC-TATATTA---TCTGATCCCCTATTGGGGCCCCATTCG--ACCCCCGGGTGGT-CAT-GATT-TGAACAAACTTGAATCT-C-CTCTATTATCAGGACAGCTTCCATATA----AA-TTCAGCTTTCCTGGGCCCAGT-GTTCTTGAGAAGAAGAT--TTTTAAAGATTT-CTCCCTATATT----ATCATA---TGT-AAAACTTTGATCCCCTATTG------TG----GCC-CCATCGTCCATTGAGGTCATGACTT-GAACAAAACTTGAA-TCT-CTCTAATC-AGGAAG-CCTACAA-TATAA-ATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAG
gi|1 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaataCATG---ATTTGAACAAAC----TTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTC--TGGCC-AGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGA-AGATTTT--TAAAGATTT--CTCCC-TATATTAT-CATATGTAAAA----CTT--TGATCCCCTAT---------TGTG-GCCCCATCGT----------CCATTGAG-GTCATGACTTGAACAAAACTTGAATCTCTCTA-ATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAGATTTTTTAAAGAT-TTTTCCT-CTATAAT-CTATATGTCAAACTTTGAT-CCCTATTGGGGCCCCATT-GTTACCCCCGG--GGTCCATTGATT-TGAACACACTTGAATCT-CACTATATA---AGGA-AGCTTCCATATA----AATTTCAGCTTTTCTGGTCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CACCACCCTAT-TTTTGCATT-TT---TGT---GA--TTA-TCTCCCTTTG-----ATGAGG-G-C-C---TGGCC-TT----TCA----TTAGAAC-AAA-TTGAA-GCC-CCTCACCCAAGGATG-ATG--TGTTACAA-GTTT--GGTTGAATTTGGCCCAGCGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AACGAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGAattttttaaagatttttcctctataatctatatgtcaaactttgatccctattggggccccattgttacccccggggtccattgatttgaacacacttgaatctcactatataaggaagcttccatataaatttcagcttttctggtcctattggttcttgagaagaagattttaaatgacaccaccctatttttgcatttttgtgattatctccctttgatgagggcctggcctttcattagaacaaattgaagcccctcacccaaggatgatgtgttacaagtttggttgaatttggcccagcggttcttgagaagaagttgaaaatgtgaaagttacgacgacgacaacgacgacgaaacggacaaattttgatcagaaaagctcacttgagccttcggctcaggtga
gi|10 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaatacttagaagagagactttactatagatttgccttccatatattctgcattgtaaaagactcttcgtgatccccaattaattaacatgtgcggtccatcgtataacctttgccttgggtgtTCTGGAGAAGAATATAAAAATGTG-AGAA-G--TTT---A-C-AAT---GCT-GAC--A------G---TC----A---ATGGACAAAT-TTTGA-TCAG-GAAACCC--CAC-TTGGGCCTTCAGC
gi|11 : CTGGAGAAGAATATGAACATATG-A-AA-AGTTT----A-C-AAC---AAC-AACG-AA-GAC-GCCAAT-GACG---ACGAACACAT-TTTGA-TCAG-AAAAGCT--CAC-TTG
gi|12 : ACTCAAGTCTG-ATT--TG-TACGA-GTTT--AGCTGAAATCGATCCATTGGTTCTTAAGAAGA--CTGAAAAGGT
gi|13 : -GAC-G---AC-AA-ATGAACAGATAAACCTTTGA-CTGG-AAAAGGT--CAC-TACAGCTTATTGCTCAGGTGA
gi|14 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAact
gi|15 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgctcaaa
gi|16 : -A---AAGGACACAT-TTTGA-TCAA-AAA--TT--CAC-TTGAGTGTTCGTCTCAGGTGAgctcaaa
gi|17 : acAAT-TTTCA-TGAG-AAATGCT--CCC-TTGAACCTTAGGCTCAGGTGgcta
gi|2 : TTGACAAGAATA-TATTTAAAGAAATTTTCCTAC-AC-ATTCC-TATGTTAAACT---AT----TATTGAAATCCCA----------CAGA--GGT-CATCAACTAT--ACAGACTTGATTCAACATTAT------------GTTTCCTTGTACGTGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGTTATT--TTTAAATG--------CTTAT-CT----ATT-TTCAGTGTATAGG--TCG-TCTCCCCTTGAAAAAATGGGATGCCTC---TGGCCACC----TCA--------AAC-A----TGAATTCT-CTTTACACAAGAATT-ATT--TA-TGCAATCTTT--AGTTGATATTGAACCAGTG--------GAAGAAGATGGAAATGTG-A-
gi|3 : GAAGATAATTTAAATAA-CG-TACCCTAT-TT----ATT-TC-----T-TAAA----A-TCTCCAGTTG--GAA---GGA-G-C-A---TGGCCATT----CGA----AC-AAAC-ACACTTGAA-TCCTCTCTTTCCAAAGAT--ACC--T-----AA-GTTT--GTTTGCAA-TGTCCCAG-GGCTATTTAGAACAAGTTGAAATTGTG-A-gtt
gi|4 : C-CTTTACCTAAGGATACATT--GA-GGCAA-GTCT--GGCTGAAACTGACAAAGTAGATTTTGG--AGAAATCGAAAATGTG---AA-G--TT----ATC-GATTCGGAC-GAC--AA-GGCAG---A---A-A---ATGGACAAAC-TACAG-TTAG-AAAA-CT---ACTTTGAGCACACGACTGAAGTGc
gi|5 : GATGAAGTTGAAA-TATG-A-AGCG--TTTTAAA-CAGTCA--GACAGAT--AG-GCA-G---AC-GA------CGGACATAA-TACGA-TCCG-AAAAGCT--CAC-TTAAACCTTC
gi|6 : attcatcccagacccccggtaccattTGAAATTGGCACAATGGTTCTGGAGAAGAAATCAAAAACATG-A-AA----------A-G-GGC-------------A-TAC-G------GA-G---A--GACA--------A-TCAACAACAGCT--CAC-TGAAGTTTTTAATTCAAGTGAtgatgagcaa
gi|7 : TGGCACAGTGGTTTTTAAAAAGA---TGAAATTGTA-A-AACA--TTG---A-CAGAC---GAC-GGC--A--GAA-G---ACAGA-A---A---ACAAAA-TT-AA-TCAG-AAAAGCT--TA--------CTTCGGCTCAgctaaa
gi|8 : TGAAAATGTA-A--------T----A-A-AAT---GAT-GACCANN-NNN-N---NN-NN-N---NNNNNNNNNN-NNNNA-CCAA-AAAAGCT--CAC-TTGAGCTTTCAGCTCATGTGA
gi|9 : cTCTTGA-AAGAAATTGAAAATGTGAA-AA-G--T-----------C---AAT-GGC--AG-ATC-T---AT-G------ACAAACAAAC-TTTTATTCAG-AAAAATT--TAC-CTGAGCtcta
Alignments
lowQualScore : 1 1 11 11 1 1 1 2222 11 333333333 1 4444444444 1 1 1 1 1 1 1 1 1 1 22 1 4444444444444 1 1 22 333333 11 1 1 1 1 55555555555 33333333 11111 11 3333333 1 2222 44444444444444444444 7777777777777777777777777777777777777777777 11111 1 1111111111 55555555555555555555555555555555555555555555555555
lowQualScore : 5 5 88 1 77 5 1 5 5 3333 77 1 999999999 5 1 1111111111 5 5 5 5 5 1 5 5 5 5 5 00 3 7777777777777 3 7 2 00 666666 88 3 2 3 6 1 3 7 66666666666 66666666 6 66666 6 33 3333333 0 1111 99999999999999999999 11 6666666666666666666666666666666666666666666 66666 0 8 9999999999 6 99 2 44 3 3 44444444444444444444444444444444444444444444444444 2 0 33 2 33 77 2 0
lowQualScore : . . .. . .. . . . . .... .. . ......... . . .......... . . . . . . . . . . . .. . ............. . . . .. ...... .. . . . . . . . ........... ........ . ..... . .. ....... . .... .................... .. ........................................... ..... . . .......... . .. . .. . . .................................................. . . .. . .. .. . .
lowQualScore : 0 0 00 0 55 5 0 0 5 5555 55 0 000000000 0 0 0000000000 5 5 5 5 0 0 5 5 5 0 5 77 3 3333333333333 3 3 0 00 333333 33 3 0 3 7 0 3 3 00000000000 77777777 7 00000 7 88 8888888 0 2222 00000000000000000000 22 0000000000000000000000000000000000000000000 00000 0 0 7777777777 7 22 3 00 6 6 44444444444444444444444444444444444444444444444444 9 5 22 9 44 99 9 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Reference ( family-274 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|1 : CTT-AGAAGAGAGACTTTACTATAGATTTGCCTTCCATATATTCTGCAT-TGTAAAAGACTCTTCGTGATCCCCAATTAATTAACATGTGCGGTCCATCGTATAACCTTTGCC-TTGGGTGTCATGATTTGAAC-AAACTTGAATCTCTCTATATCA-GAAGCTTCC-ATATAAA-TTTCAG-CTTT-CTGGCCA-GTGGTTCTTGAGAAGAAGA--TTTTAAAGAT-TTT-----------T-CC-TATATTA---TCTGATCCCCTATTGGGGCCCCATTCG--ACCCCCGGGTGGT-CAT-GATT-TGAACAAACTTGAATCT-C-CTCTATTATCAGGACAGCTTCCATATAAA-TT-----CAGCTTTCCTGGGCCCAGT-GTTCTTGAGAAGAAGAT--TTTTAAAGATTT-CTCCCTATATT----ATCATA---TGT-AAAACTTTGATCCCCTATTG------TG----GCC-CCATCGTCCATTGAGGTCATGACTT-GAACAAAACTTGAA-TCT-CTCTAATC-AGGAAG-CCTACAA-TATAA-ATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAG
gi|1 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaataCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGA-AGATTTT--TAAAGATTT--CTCCC-TATATTAT-CATATGTAAAA----CTT--TGATCCCCTAT---------TGTG-GCCCCATCGT----------CCATTGAG-GTCATGACTTGAACAAAACTTGAATCTCTCTA-ATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAGATTTTTTAAAGAT-TTTTCCT-CTATAAT-CTATATGTCAAACTTTGAT-CCCTATTGGGGCCCCATT-GTTACCCCCGG--GGTCCATTGATT-TGAACACACTTGAATCT-CACTATATA---AGGA-AGCTTCCATATAAATTT-----CAGCTTTTCTGGTCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CACCACCCTAT-TTTTGCATT-TT---TGT---GA--TTA-TCTCCCTTTG-----ATGAGG-G-C-C---TGGCC-TT----TCA----TTAGAAC-AAA-TTGAA-GCC-CCTCACCCAAGGATG-ATG--TGTTACAA-GTTT--GGTTGAATTTGGCCCAGCGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AACGAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGAattttttaaagatttttcctctataatctatatgtcaaactttgatccctattggggccccattgttacccccggggtccattgatttgaacacacttgaatctcactatataaggaagcttccatataaatttcagcttttctggtcctattggttcttgagaagaagattttaaatgacaccaccctatttttgcatttttgtgattatctccctttgatgagggcctggcctttcattagaacaaattgaagcccctcacccaaggatgatgtgttacaagtttggttgaatttggcccagcggttcttgagaagaagttgaaaatgtgaaagttacgacgacgacaacgacgacgaaacggacaaattttgatcagaaaagctcacttgagccttcggctcaggtga
gi|10 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaatacttagaagagagactttactatagatttgccttccatatattctgcattgtaaaagactcttcgtgatccccaattaattaacatgtgcggtccatcgtataacctttgccttgggtgtTCTGGAGAAGAATATAAAAATGTG-AGAA-G--TTT---A-C-AAT---GCT-GAC--A------G---TC----A---ATGGACAAAT-TTTGA-TCAG-GAAACCC--CAC-TTGGGCCTTCAGC
gi|11 : CTGGAGAAGAATATGAACATATG-A-AA-AGTTT----A-C-AAC---AAC-AACG-AA-GAC-GCCAAT-GACG---ACGAACACAT-TTTGA-TCAG-AAAAGCT--CAC-TTG
gi|12 : ACTCAAGTCTG-ATT--TG-TACGA-GTTT--AGCTGAAATCGATCCATTGGTTCTTAAGAAGA--CTGAAAAGGT
gi|13 : -GAC-G---AC-AA-ATGAACAGATAAACCTTTGA-CTGG-AAAAGGT--CAC-TACAGCTTATTGCTCAGGTGA
gi|14 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAact
gi|15 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgctcaaa
gi|16 : -A---AAGGACACAT-TTTGA-TCAA-AAA--TT--CAC-TTGAGTGTTCGTCTCAGGTGAgctcaaa
gi|17 : acAAT-TTTCA-TGAG-AAATGCT--CCC-TTGAACCTTAGGCTCAGGTGgcta
gi|2 : TTGACAAGAATA-TATTTAAAGAAATTTTCCTAC-AC-ATTCC-TATGTTAAACT---AT----TATTGAAATCCCA----------CAGA--GGT-CATCAACTAT--ACAGACTTGATTCAACATTAT------------GTTTCCTTGTACG-TGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGTTATT--TTTAAATG--------CTTAT-CT----ATT-TTCAGTGTATAGG--TCG-TCTCCCCTTGAAAAAATGGGATGCCTC---TGGCCACC----TCA--------AAC-A----TGAATTCT-CTTTACACAAGAATT-ATT--TA-TGCAATCTTT--AGTTGATATTGAACCAGTG--------GAAGAAGATGGAAATGTG-A-
gi|3 : GAAGATAATTTAAATAA-CG-TACCCTAT-TT----ATT-TC-----T-TAAA----A-TCTCCAGTTG--GAA---GGA-G-C-A---TGGCCATT----CGA----AC-AAAC-ACACTTGAA-TCCTCTCTTTCCAAAGAT--ACC--T-----AA-GTTT--GTTTGCAA-TGTCCCAG-GGCTATTTAGAACAAGTTGAAATTGTG-A-gtt
gi|4 : C-CTTTACCTAAGGATACATT--GA-GGCAA-GTCT--GGCTGAAACTGACAAAGTAGATTTTGG--AGAAATCGAAAATGTG---AA-G--TT----ATC-GATTCGGAC-GAC--AA-GGCAG---A---A-A---ATGGACAAAC-TACAG-TTAG-AAAA-CT---ACTTTGAGCACACGACTGAAGTGc
gi|5 : GATGAAGTTGAAA-TATG-A-AGCG--TTTTAAA-CAGTCA--GACAGAT--AG-GCA-G---AC-GA------CGGACATAA-TACGA-TCCG-AAAAGCT--CAC-TTAAACCTTC
gi|6 : attcatcccagacccccggtaccattTGAAATTGGCACAATGGTTCTGGAGAAGAAATCAAAAACATG-A-AA----------A-G-GGC-------------A-TAC-G------GA-G---A--GACA--------A-TCAACAACAGCT--CAC-TGAAGTTTTTAATTCAAGTGAtgatgagcaa
gi|7 : TGGCACAGTGGTTTTTAAAAAGA---TGAAATTGTA-A-AACA--TTG---A-CAGAC---GAC-GGC--A--GAA-G---ACAGA-A---A---ACAAAA-TT-AA-TCAG-AAAAGCT--TA--------CTTCGGCTCAgctaaa
gi|8 : TGAAAATGTA-A--------T----A-A-AAT---GAT-GACCANN-NNN-N---NN-NN-N---NNNNNNNNNN-NNNNA-CCAA-AAAAGCT--CAC-TTGAGCTTTCAGCTCATGTGA
gi|9 : cTCTTGA-AAGAAATTGAAAATGTGAA-AA-G--T-----------C---AAT-GGC--AG-ATC-T---AT-G------ACAAACAAAC-TTTTATTCAG-AAAAATT--TAC-CTGAGCtcta
Alignments
lowQualScore : 1 1 11 11 1 1 1 2222 11 333333333 1 4444444444 1 1 1 1 1 1 1 1 1 1 22 1 4444444444444 1 1 22 333333 11 1 1 1 1 55555555555 33333333 11111 11 3333333 1 2222 44444444444444444444 7777777777777777777777777777777777777777777 11111 1 1111111111 55555555555555555555555555555555555555555555555555
lowQualScore : 5 5 88 1 77 5 1 5 5 3333 77 1 999999999 5 1 1111111111 5 5 5 5 5 1 5 5 5 5 5 00 3 7777777777777 3 7 2 00 666666 88 3 2 3 6 1 3 7 66666666666 66666666 6 66666 6 33 3333333 0 1111 99999999999999999999 11 6666666666666666666666666666666666666666666 66666 0 8 9999999999 6 99 2 44 3 3 44444444444444444444444444444444444444444444444444 2 0 33 2 33 77 2 0
lowQualScore : . . .. . .. . . . . .... .. . ......... . . .......... . . . . . . . . . . . .. . ............. . . . .. ...... .. . . . . . . . ........... ........ . ..... . .. ....... . .... .................... .. ........................................... ..... . . .......... . .. . .. . . .................................................. . . .. . .. .. . .
lowQualScore : 0 0 00 0 55 5 0 0 5 5555 55 0 000000000 0 0 0000000000 5 5 5 5 0 0 5 5 5 0 5 77 3 3333333333333 3 3 0 00 333333 33 3 0 3 7 0 3 3 00000000000 77777777 7 00000 7 88 8888888 0 2222 00000000000000000000 22 0000000000000000000000000000000000000000000 00000 0 0 7777777777 7 22 3 00 6 6 44444444444444444444444444444444444444444444444444 9 5 22 9 44 99 9 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Reference ( family-274 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|1 : CTT-AGAAGAGAGACTTTACTATAGATTTGCCTTCCATATATTCTGCAT-TGTAAAAGACTCTTCGTGATCCCCAATTAATTAACATGTGCGGTCCATCGTATAACCTTTGCC-TTGGGTGTCATGATTTGAAC-AAACTTGAATCTCTCTATATCA-GAAGCTTCC-ATATAAA-TTTCAG-CTTT-CTGGCCA-GTGGTTCTTGAGAAGAAGA--TTTTAAAGAT-TTT-----------T-CC-TATATTA---TCTGATCCCCTATTGGGGCCCCATTCG--ACCCCCGGGTGGT-CAT-GATT-TGAACAAACTTGAATCT-C-CTCTATTATCAGGACAGCTTCCATATAAA-TT-----CAGCTTTCCTGGGCCCAGT-GTTCTTGAGAAGAAGAT--TTTTAAAGATTT-CTCCCTATATT----ATCATA---TGT-AAAACTTTGATCCCCTATTG------TG----GCC-CCATCGTCCATTGAGGTCATGACTT-GAACAAAACTTGAA-TCT-CTCTAATC-AGGAAG-CCTACAA-TATAA-ATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAG
gi|1 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaataCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGA-AGATTTT--TAAAGATTT--CTCCC-TATATTAT-CATATGTAAAA----CTT--TGATCCCCTAT---------TGTG-GCCCCATCGT----------CCATTGAG-GTCATGACTTGAACAAAACTTGAATCTCTCTA-ATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAGATTTTTTAAAGAT-TTTTCCT-CTATAAT-CTATATGTCAAACTTTGAT-CCCTATTGGGGCCCCATT-GTTACCCCCGG--GGTCCATTGATT-TGAACACACTTGAATCT-CACTATATA---AGGA-AGCTTCCATATAAATTT-----CAGCTTTTCTGGTCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CACCACCCTAT-TTTTGCATT-TT---TGT---GA--TTA-TCTCCCTTTG-----ATGAGG-G-C-C---TGGCC-TT----TCA----TTAGAAC-AAA-TTGAA-GCC-CCTCACCCAAGGATG-ATG--TGTTACAA-GTTT--GGTTGAATTTGGCCCAGCGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AACGAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGAattttttaaagatttttcctctataatctatatgtcaaactttgatccctattggggccccattgttacccccggggtccattgatttgaacacacttgaatctcactatataaggaagcttccatataaatttcagcttttctggtcctattggttcttgagaagaagattttaaatgacaccaccctatttttgcatttttgtgattatctccctttgatgagggcctggcctttcattagaacaaattgaagcccctcacccaaggatgatgtgttacaagtttggttgaatttggcccagcggttcttgagaagaagttgaaaatgtgaaagttacgacgacgacaacgacgacgaaacggacaaattttgatcagaaaagctcacttgagccttcggctcaggtga
gi|10 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaatacttagaagagagactttactatagatttgccttccatatattctgcattgtaaaagactcttcgtgatccccaattaattaacatgtgcggtccatcgtataacctttgccttgggtgtTCTGGAGAAGAATATAAAAATGTG-AGAA-G--TTT---A-C-AAT---GCT-GAC--A------G---TC----A---ATGGACAAAT-TTTGA-TCAG-GAAACCC--CAC-TTGGGCCTTCAGC
gi|11 : CTGGAGAAGAATATGAACATATG-A-AA-AGTTT----A-C-AAC---AAC-AACG-AA-GAC-GCCAAT-GACG---ACGAACACAT-TTTGA-TCAG-AAAAGCT--CAC-TTG
gi|12 : ACTCAAGTCTG-ATT--TG-TACGA-GTTT--AGCTGAAATCGATCCATTGGTTCTTAAGAAGA--CTGAAAAGGT
gi|13 : -GAC-G---AC-AA-ATGAACAGATAAACCTTTGA-CTGG-AAAAGGT--CAC-TACAGCTTATTGCTCAGGTGA
gi|14 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAact
gi|15 : -A---ACGAACAAAT-CTTGA-TCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgctcaaa
gi|16 : -A---AAGGACACAT-TTTGA-TCAA-AAA--TT--CAC-TTGAGTGTTCGTCTCAGGTGAgctcaaa
gi|17 : acAAT-TTTCA-TGAG-AAATGCT--CCC-TTGAACCTTAGGCTCAGGTGgcta
gi|2 : TTGACAAGAATA-TATTTAAAGAAATTTTCCTAC-AC-ATTCC-TATGTTAAACT---AT----TATTGAAATCCCA----------CAGA--GGT-CATCAACTAT--ACAGACTTGATTCAACATTAT------------GTTTCCTTGTACG-TGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGTTATT--TTTAAATG--------CTTAT-CT----ATT-TTCAGTGTATAGG--TCG-TCTCCCCTTGAAAAAATGGGATGCCTC---TGGCCACC----TCA--------AAC-A----TGAATTCT-CTTTACACAAGAATT-ATT--TA-TGCAATCTTT--AGTTGATATTGAACCAGTG--------GAAGAAGATGGAAATGTG-A-
gi|3 : GAAGATAATTTAAATAA-CG-TACCCTAT-TT----ATT-TC-----T-TAAA----A-TCTCCAGTTG--GAA---GGA-G-C-A---TGGCCATT----CGA----AC-AAAC-ACACTTGAA-TCCTCTCTTTCCAAAGAT--ACC--T-----AA-GTTT--GTTTGCAA-TGTCCCAG-GGCTATTTAGAACAAGTTGAAATTGTG-A-gtt
gi|4 : C-CTTTACCTAAGGATACATT--GA-GGCAA-GTCT--GGCTGAAACTGACAAAGTAGATTTTGG--AGAAATCGAAAATGTG---AA-G--TT----ATC-GATTCGGAC-GAC--AA-GGCAG---A---A-A---ATGGACAAAC-TACAG-TTAG-AAAA-CT---ACTTTGAGCACACGACTGAAGTGc
gi|5 : GATGAAGTTGAAA-TATG-A-AGCG--TTTTAAA-CAGTCA--GACAGAT--AG-GCA-G---AC-GA------CGGACATAA-TACGA-TCCG-AAAAGCT--CAC-TTAAACCTTC
gi|6 : attcatcccagacccccggtaccattTGAAATTGGCACAATGGTTCTGGAGAAGAAATCAAAAACATG-A-AA----------A-G-GGC-------------A-TAC-G------GA-G---A--GACA--------A-TCAACAACAGCT--CAC-TGAAGTTTTTAATTCAAGTGAtgatgagcaa
gi|7 : TGGCACAGTGGTTTTTAAAAAGA---TGAAATTGTA-A-AACA--TTG---A-CAGAC---GAC-GGC--A--GAA-G---ACAGA-A---A---ACAAAA-TT-AA-TCAG-AAAAGCT--TA--------CTTCGGCTCAgctaaa
gi|8 : TGAAAATGTA-A--------T----A-A-AAT---GAT-GACCANN-NNN-N---NN-NN-N---NNNNNNNNNN-NNNNA-CCAA-AAAAGCT--CAC-TTGAGCTTTCAGCTCATGTGA
gi|9 : cTCTTGA-AAGAAATTGAAAATGTGAA-AA-G--T-----------C---AAT-GGC--AG-ATC-T---AT-G------ACAAACAAAC-TTTTATTCAG-AAAAATT--TAC-CTGAGCtcta
blockSeqs : G . . A . . A . A . . T . . C . A . A . G A A T T C T TT A TCCTCTATAAT A A T C TTGTT . C T A G C A A ATAAGGA TGAAGGA C TATTG G AA ACACCA . TTGC TTCAGTGTATAGGTCG CT AAAAAATGGGATGCCTCTGGCCACCTCA ACAC T T GATGTGT T . T TA A G AGTTTACAACAACAACGAAGACGCCAATGACG T CC T AC GA T
blockSeqs : T . TCCTACACATT . A . . . . . C . . G . A . TTT . ATG . . ACGTA . . TTTGTGATTA CC ATGAGGGCCTGGCCTTTCATTAG AAA . . ACATTGA . . T TA . . CGTTTTAAACAGTCAGACAGATAGGCAGACGA C T . G GA .
blockSeqs : . . . . TCTTAAAA AG GAAGGAGCATGGCCATTCGAACA A . . GATTTG . . T GA . . GTTATCGATTCGGACGACAAGGCAGAAA C T . G . .
blockSeqs : . TATTTA . . C GT . . CATTGACAGACGACGGCAGAAGACAGAA C T . G . .
blockSeqs : ACCT . . T AT . . TAAAATGATGACCANNNNNNNNNNN C T . A . .
blockSeqs : . GT . . GTTTACAATGCTGACAGTCA A T . G . .
blockSeqs : AT . . GTCAATGGCAGATCTATG T T . G . .
blockSeqs : AT . . AGGGCATACGGAG C C . G . .
blockSeqs : C . . N A . G . .
blockSeqs : . . . C A . A . .
blockSeqs : . N . G . .
blockSeqs : . C . . . .
blockSeqs : . . . . .
blockSeqCons : NATTTA**** ** CGTTNACAGACGACGACAGAAGGCGGAA**********************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATG-ATT--TA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AA-G--TT----A-C-GAC---GAC-GAC--AA-GAC-G---AC-GA-A---ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATNATTTA----TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTG-A-AACGTTNACAGACGACGACAGAAGGCGGAA----------------------ACGGACAAAT-TTTGA-TCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Alignments
lowQualScore : 1 1 11 11 1 1 1 2222 11 333333333 1 4444444444 1 1 1 1 1 1 1 1 1 1 22 1 4444444444444 1 1 22 333333 11 1 1 1 1 55555555555 33333333 11111 11 3333333 1 2222 44444444444444444444 7777777777777777777777777777777777777777777 11111 1 111111111 77777777777777777777777777777777777777777777777
lowQualScore : 5 5 88 1 77 5 1 5 5 3333 77 1 999999999 5 1 1111111111 5 5 5 5 5 1 5 5 5 5 5 00 3 7777777777777 3 7 2 00 666666 88 3 2 3 6 1 3 7 66666666666 66666666 6 66666 6 33 3333333 0 1111 99999999999999999999 11 6666666666666666666666666666666666666666666 66666 0 8 888888888 6 99 2 44 33333333333333333333333333333333333333333333333 2 2 33 33 77 2 0
lowQualScore : . . .. . .. . . . . .... .. . ......... . . .......... . . . . . . . . . . . .. . ............. . . . .. ...... .. . . . . . . . ........... ........ . ..... . .. ....... . .... .................... .. ........................................... ..... . . ......... . .. . .. ............................................... . . .. .. .. . .
lowQualScore : 0 0 00 0 55 5 0 0 5 5555 55 0 000000000 0 0 0000000000 5 5 5 5 0 0 5 5 5 0 5 77 3 3333333333333 3 3 0 00 333333 33 3 0 3 7 0 3 3 00000000000 77777777 7 00000 7 88 8888888 0 2222 00000000000000000000 22 0000000000000000000000000000000000000000000 00000 0 0 555555555 7 22 3 00 66666666666666666666666666666666666666666666666 9 2 88 44 99 9 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATN-AT-TTA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTGAAA-GT---T----ACAGA-C---GACGAC--AGA-AGAC-G-----GA-AACGGACAAAT-TTTGATCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
Reference ( family-274 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGAGAGACTTTACTANAGATTTGCCTCCCATATATTNTGCATATGTAAAAGACTCTTCGTGATCCCCNATTAATTAACATGTGCGNCCCATCGTATAACCTTTGCCATTGGGTGTCATGACTTGAACAAAACTTGAATCTCTCTATATCAGGAAGCCTNCAATATAAATTTTCAGTCTTTCCTGGCCATGTGGTTCTTGAGAAGAAGA-TTTTTAAAGAT-TTTTCCT-C-AC-AT-CC-TATGTTAAACTCTGAT-CCCTATTGGGGCCCCATT-G--ACCCCCGG--GGT-CATCGATT-TGAACANACTTGAATCT-CACTATAT----AGGA-AGCTTCCATATAAA-TT-----CAGCTTTTCTGGGCCCATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CG-CACCCTAT-TT----ATT-TT---TGT-TAGA--TCG-TCTCCCNTTG--GAAATGGGA-GCC-C---TGGCCATT----TCA----TC-GAAC-AAACTTGAA-TCC-CTTTACCCAAGGATN-AT-TTA-TACAA-GTTT--GGTTGAAATTGGCCCAGTGGTTCTTGAGAAGAAGTTGAAAATGTGAAACGT---TN---ACAGA-C---GACGAC--AGA-AGGC-G-----GA-AACGGACAAAT-TTTGATCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGA
gi|1 : CTT-AGAAGAGAGACTTTACTATAGATTTGCCTTCCATATATTCTGCAT-TGTAAAAGACTCTTCGTGATCCCCAATTAATTAACATGTGCGGTCCATCGTATAACCTTTGCC-TTGGGTGTCATGATTTGAAC-AAACTTGAATCTCTCTATATCA-GAAGCTTCC-ATATAAA-TTTCAG-CTTT-CTGGCCA-GTGGTTCTTGAGAAGAAGA--TTTTAAAGAT-TTT-----------T-CC-TATATTA---TCTGATCCCCTATTGGGGCCCCATTCG--ACCCCCGGGTGGT-CAT-GATT-TGAACAAACTTGAATCT-C-CTCTATTATCAGGACAGCTTCCATATAAA-TT-----CAGCTTTCCTGGGCCCAGT-GTTCTTGAGAAGAAGAT--TTTTAAAGATTT-CTCCCTATATT----ATCATA---TGT-AAAACTTTGATCCCCTATTG------TG----GCC-CCATCGTCCATTGAGGTCATGACTT-GAACAAAACTTGAA-TCT-CTCTAATCAGGAAGC-CTACAA-TATAA-ATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAG
gi|1 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaataCATGATTTGAACAAACTTGAATCTCTCTATATCAGAAGCTTCCATATAAATTTCAGCTTTCTGGCCAGTGGTTCTTGAGAAGAAGATTTTAAAGATTTTTCCTATATTATCTGATCCCCTATTGGGGCCCCATTCGACCCCCGGGTGGTCATGATTTGAACAAACTTGAATCTCCTCTATTATCAGGACAGCTTCCATATAAATTCAGCTTTCCTGGGCCCAGTGTTCTTGAGAAGA-AGATTTT--TAAAGATTT--CTCCC-TATATTAT-CATATGTAAAA----CTT--TGATCCCCTAT---------TGTG-GCCCCATCGT----------CCATTGAG-GTCATGACTTGAACAAAACTTGAATCTCTCTA-ATCAGGAAGCCTACAATATAAATTTTCAGTCTTTCCTAGCCATGTGGTTCTTGAGAAGAAGATTTTTTAAAGAT-TTTTCCT-CTATAAT-CTATATGTCAAACTTTGAT-CCCTATTGGGGCCCCATT-GTTACCCCCGG--GGTCCATTGATT-TGAACACACTTGAATCT-CACTATATA---AGGA-AGCTTCCATATAAATTT-----CAGCTTTTCTGGTCCTATTGGTTCTTGAGAAGAAGAT--TTTAAATGA-CACCACCCTAT-TTTTGCATT-TT---TGT---GA--TTA-TCTCCCTTTG-----ATGAGG-G-C-C---TGGCC-TT----TCA----TTAGAAC-AAA-TTGAA-GCC-CCTCACCCAAGGATG-AT-GTGTTACAA-GTTT--GGTTGAATTTGGCCCAGCGGTTCTTGAGAAGAAGTTGAAAATGTGAAA-GT---T----AC-GA-C---GACGAC--A-A-CGAC-GAC---GA-AACGGACAAAT-TTTGATCAG-AAAAGCT--CAC-TTGAGCCTTCGGCTCAGGTGAattttttaaagatttttcctctataatctatatgtcaaactttgatccctattggggccccattgttacccccggggtccattgatttgaacacacttgaatctcactatataaggaagcttccatataaatttcagcttttctggtcctattggttcttgagaagaagattttaaatgacaccaccctatttttgcatttttgtgattatctccctttgatgagggcctggcctttcattagaacaaattgaagcccctcacccaaggatgatgtgttacaagtttggttgaatttggcccagcggttcttgagaagaagttgaaaatgtgaaagttacgacgacgacaacgacgacgaaacggacaaattttgatcagaaaagctcacttgagccttcggctcaggtga
gi|10 : atataaagtttatcaggcttttttcctggcccctagtaatagagtctctttgagagaatacttagaagagagactttactatagatttgccttccatatattctgcattgtaaaagactcttcgtgatccccaattaattaacatgtgcggtccatcgtataacctttgccttgggtgtTCTGGAGAAGAATATAAAAATGTGAGAAGT---TT---ACA-A-T---GCTGAC--AG----TC----------AATGGACAAAT-TTTGATCAG-GAAACCC--CAC-TTGGGCCTTCAGC
gi|11 : CTGGAGAAGAATATGAACATATGAAAAGT---TT---ACA-A-C---AACAAC---GA-AGAC-GCCAATGACGACGAACACAT-TTTGATCAG-AAAAGCT--CAC-TTG
gi|12 : ACTCAAGTCTG-AT-TTG-TACGA-GTTT--AGCTGAAATCGATCCATTGGTTCTTAAGAAGA--CTGAAAAGGT
gi|13 : ---GACGAC--AAA-TG------------AACAGATAAACCTTTGACTGG-AAAAGGT--CAC-TACAGCTTATTGCTCAGGTGA
gi|14 : -AACGAACAAAT-CTTGATCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAact
gi|15 : -AACGAACAAAT-CTTGATCA--AACAGCTGACAC-CAGAGCCTTCGGTTT-GGTGAgctcaaa
gi|16 : -AAAGGACACAT-TTTGATCAA-AAA--TT--CAC-TTGAGTGTTCGTCTCAGGTGAgctcaaa
gi|17 : acAAT-TTTCATGAG-AAATGCT--CCC-TTGAACCTTAGGCTCAGGTGgcta
gi|2 : TTGACAAGAATA-TATTTAAAGAAATTTTCCTAC-AC-ATTCC-TATGTTAAACT---AT----TATTGAAATCCCA----------CAGA--GGT-CATCAACTAT--ACAGACTTGATTCAACATTAT------------GTTTCCTTGTACG-TGAAGGACAA----TATGGGCC-AT-GGTTCTTGA--AGTTATT--TTTAAATG--------CTTAT-CT----ATT-TTCAGTGTATAGG--TCG-TCTCCCCTTGAAAAAATGGGATGCCTC---TGGCCACC----TCA--------AAC-A----TGAATTCT-CTTTACACAAGAATT-AT-TTA-TGCAATCTTT--AGTTGATATTGAACCAGTG--------GAAGAAGATGGAAATGTGA
gi|3 : GAAGATAATTTAAATAA-CG-TACCCTAT-TT----ATT-TC-----T-TAAA----A-TCTCCAGTTG--GAA---GGA-G-C-A---TGGCCATT----CGA----AC-AAAC-ACACTTGAA-TCCTCTCTTTCCAAAGATA-CC-T------AA-GTTT--GTTTGCAA-TGTCCCAG-GGCTATTTAGAACAAGTTGAAATTGTGAgtt
gi|4 : C-CTTTACCTAAGGATACAT-TGA-GGCAA-GTCT--GGCTGAAACTGACAAAGTAGATTTTGG--AGAAATCGAAAATGTGAA--GT---TA---TC-GA-TTCGGACGAC----A-AGGCAG-----AA-AATGGACAAAC-TACAGTTAG-AAAA-CT---ACTTTGAGCACACGACTGAAGTGc
gi|5 : GATGAAGTTGAAA-TATGAAGCGT---TTTAAACAGT-C---A--GAC--AGATAGGC-A-----GACGACGGACATAA-TACGATCCG-AAAAGCT--CAC-TTAAACCTTC
gi|6 : attcatcccagacccccggtaccattTGAAATTGGCACAATGGTTCTGGAGAAGAAATCAAAAACATGAAA-------------AG---------GGC--ATA----C-G-----GA-GA--GACA--------ATCAACAACAGCT--CAC-TGAAGTTTTTAATTCAAGTGAtgatgagcaa
gi|7 : TGGCACAGTGGTTTTTAAAAAGA---TGAAATTGTAAAACAT---TG---ACAGA-C---GACGGC--AGA-AGAC-A-----GA-AA---ACAAA--ATTAATCAG-AAAAGCT--TA--------CTTCGGCTCAgctaaa
gi|8 : TGAAAATGTAATA-------------AAA-T---GATGACCANNN-NNNN-N-----NN-NNNNNNNNNNN-NNNNACCAA-AAAAGCT--CAC-TTGAGCTTTCAGCTCATGTGA
gi|9 : cTCTTGA-AAGAAATTGAAAATGTGAAAAGTCAATG---GCAGATC---TATGAC------------------A-AACAAAC---T-TTTATTCAG-AAAAATT--TAC-CTGAGCtcta