lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111 111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 444444444444444 33 333 22222222222222222222222222222222222222222222 4 22 22 1 1 2 44444 1 77777 1 444 2 22 66666666 333333 33333333 1 333333 44444444444444 2222222 1 22 222 333333 3333 1 5555555555555 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 444444 2 33333 2 1 11111111111111111111111111 11 888888888888 22222 88888888888888888888888888888888888888 2 1 33333333 44 5555555 3333 2 7777777777777777777777 1 1 1 1 333333333333333 1 4 55 777 222 555 11 444444444444444444444444444444444444444444444444444444 2222222222 4444444444444444 4444444444 11 3333 4 2
lowQualScore : 666 6 5 999999999999999 44 111 3 66666666666666666666666666666666666666666666 0 33 3 22 5 6 5 0 11111 4 5 55555 0 000 7 0 88 77 77777777 444444 33333333 2 3 6 222222 22222222222222 3333333 3 55 333 888888 1111 3 7 7777777777777 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 222222 0 99999 7 5 88 2 00000000000000000000000000 3 99 111111111111 55 99999 99999999999999999999999999999999999999 0 5 22222222 33 0000000 4 2 8888 3 0 3 0000000000000000000000 5 7 7 7 111111111111111 7 6 0 6 55 6 000 333 777 2 88 6 0 999999999999999999999999999999999999999999999999999999 6 3 6 4444444444 4444444444444444 2 8 8 3333333333 999 33 6666 0 9 3
lowQualScore : ... . . ............... .. ... . ............................................ . .. . .. . . . . ..... . . ..... . ... . . .. .. ........ ...... ........ . . . ...... .............. ....... . .. ... ...... .... . . ............. ......................................................................................................................... . ...... . ..... . . .. . .......................... . .. ............ .. ..... ...................................... . . ........ .. ....... . . .... . . . ...................... . . . . ............... . . . . .. . ... ... ... . .. . . ...................................................... . . . .......... ................ . . . .......... ... .. .... . . .
lowQualScore : 777 7 0 000000000000000 55 000 0 55555555555555555555555555555555555555555555 0 00 0 55 5 0 5 0 55555 0 5 55555 5 555 3 0 00 55 55555555 555555 55555555 5 3 7 333333 77777777777777 7777777 3 33 333 333333 0000 3 3 3333333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 000000 0 00000 5 5 00 5 55555555555555555555555555 0 55 000000000000 00 55555 55555555555555555555555555555555555555 0 0 00000000 00 5555555 0 5 5555 0 0 0 5555555555555555555555 0 0 0 0 000000000000000 0 0 0 0 00 0 000 000 555 5 77 7 2 888888888888888888888888888888888888888888888888888888 5 2 7 0000000000 8888888888888888 5 8 8 2222222222 000 88 0000 0 3 6
consensus : CAGTCGGTC-G-TCAC-GTGCGGTCCAGCNNTGCAGGTGCTTCTTTTCTTCGCATTTGNCATTCGG------AACTCCCAAGGAAAGAGANCGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGNTNAATGCATNATTTTTAGGGGTGTTTGTTAATTAGCAGGATATACATATGCANTTCCTCGTGTCT--CGNAAATCNTTGAAGCCATACATGTACGCTCTGTANNCCTGAAGATGTCTACCGATTTTACAATTGACCTAATACAANNCTTANTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--CGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAA-TT-GCGG-GTATAC-CGT-A-G---TTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG--GCTATAAAAAAAANCCGCCTANNTATTATAAGTTTTTTTCNCTTTT-TTGC-ACATAACTGGTGTCATTTCAGAAAAAAAANNATNTCAC-ATGAGAAAAATACNTTTTGT-ANCGNTNTGCATATACATTTAGAACATACTTTGNCGGAAAGATATCATGTACAGTATGCTCNATA-GATCTGCNCATTTCNGTCCGATACAATACCATGCAAGTATCATAGTTAGGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTGTANTNTTTAGTGTTNTCTTAACCTNTATATATTAGTAANGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGTATGAATTAATTAAT--CATTNCGG-GTTCAGCGTGCGGTCA---------GC----CGGT---CATCC-ATT--GCGGTCAG-CG-TG-G--TC-ANCGTGCGGTCACCGTTCACCANACTAGCGGTC-A-CC-GT-NGCG---GGTCACCGTGCGT---------TCNNCGTGCGGT--CAACCAGTGCG-TGTGGTAAAGTAG-AACGTTT-CAGGGACTGT
Reference ( gi|1 ) : CAGTCGGTC-G-TCACCGTGCGGTCCAGCAATACAGGTGCTTTTTCACTTTGCA-T-GACATTCGGGGTACTAACT-C-AAAGAAAGAAAGCGT-GCTACGTGTCCACCCATTTACAGATGCTGCC-GTGTTT-TTTAATGCATC-TTTTTAAGGGTGTTTGTTAATT-GCAGG---TATATATGTATTTCCTTGTGGCTTGCGGAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AACACT-ACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAA-AT-GCAG-GTATAT-TGT-ATG---TTCCTCGTG-----------CCCCTAA-AT-TTTG-------AAGCC--ATG-CCATG-TA-G-CCCGT-AATCCCTTGGATGT--GCG-TGTACAGTTGCTATAAAAAAAAA------AAAAATTAAGGGTTTTTTTTTCTTTTGTTGCGACAT-ACTGGTG-CATGTTAGAAAAAAAATAATCTCCCTAT-AG-AAA-TAC---TTGTCAACGTTTTGTATATACATT---AGCATACTTTACCAGAAA--TA-CATGTACAGTATGCTTTATACGATCTGCATATTTTCAT---A-ACA--AC-ATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTATGATCCATTGAGTTGAA-ATGTATTGTTT--T-TTTTCTT-ACCTATA---ATTATTAATGTA--TGG-TACAAGTAATTTATTTAATTTATTTTTTAGGCTAATGGA-ATAGAATATATCTAACCC-AGTGGAAAAAAATTCCGAAACATTCCG---GAATGATTTAATGTCATTGTGGCGTTCAGCGTGCGGTCA--------AGC----CGGT---CA--C-ATT--GCGGTCAGTCGCTG-G--T--AGCGTGCGGTCACCGGTCAGCAAATTGGCGGTC-A-CC-GT-AACG---GGTCACCGTGCGT---------TCTCCGTGCGGT--CAACCAGTGCGATGTGGTAAAGTAGGAACGTTT-CAGGGACTGT
gi|6 : CAGTCGGTC-G-TCACCGTGCGGT
gi|3 : acagtccctgaaacgttctactttacaaaacaatttttccggcggtcaccggtcacattttgcggtccagcgtgcggtcaccgttcgcagtcaagcggttatccgttgcgtcGGTC-GGTCAC-GTGCGGTC-AGCGGT-CAGG--CTTTTTTTCTTTGCA-TTGACATTCGG------AACT-CCAAAGA--GAAAGTGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGTTTAATGCATC-TTTT-AGGGGTGTT-GTTAATT-GCAGG---T-TATATGTATT-CCTTGTG-CT--CGTAAATCC-TGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAATTG--CTAATA-AAAA-T-ACTGTG-TTGACAAGGGG--TA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAA-TT-GCAG-GTATA--TGT-A-----TTCCTCGTG------------CCCTAATAT-TTTG-------AAGCC--ATG--CATG-TA-C-CCCGT-AATCC--TGGATGT---CG-T-TACAG-TGCT-TAAAAAAAAT------ATA---TA---GTTTTTTTTTCTTTT-TTGC-ACATAACT-GTA-CATTTCAG-AAAAAAATAATCTCAC-ATGAGAAAA-TACTTTTTGT-ATCGTTATACATATACATTTAGAACATACTTTACAGAAAA--TA-CATGTACAGTATGC-TTATA-GA-CTGCTCATTTCAAT-----ACAATAC-ATGTAAGTATCAT-GT--GG-TTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTATATTTTTT--T-TTTTCTT-ACCTATATATATTA-TAAT-TA--T
gi|8 : GGTCCG-T-ACAGTGCGGT-CAGCCTTGCA-ATGTTTCTTT-CTTCGCATT-GCCATTCGG------AACTCC-AAGGAAAAAGATCGT---TACATGT
gi|2 : TGTTT-GTGAATGCATAATTTTTAGGGGTGTTTGTTAATTAGCAGGATATACATATGCAATTCCTCGTGTC---CGAAAAT-GTTGAAGCCAGATA-GTACGCa
gi|4 : acaaactgatttgtggttgaacggggtacatcgtcctgttAGCCCTACATGTACAATCTGTATACCTGAAGATGTCTACCGATTTTACA--TGACTTAATACAACCCTTAATGTG-TTGACAAGGGGATCACCCACCAACAGCAAACCGATCGTTTGTTT---AACTTGTCATATAATTCTTTGGAAGGATGCCTATATAAGTTAATGT-GCGGAGTAT-C-TGTCAAG---TCTCACGTGGGCGCTGCTGTTCACTAA-ATATTTAATGTTGTAAGCCCAATGAACATGATACGTCCCGTGAATCCC-TGGATGTCAACGTTGTACAGTGGCTAacctggttatagggtgtaataaaaaaaaaccgcctaactattataagtttttttcatttttttgcacatactgtgtcatttagaaaaaaaaatatatcatgagaaaatacgttgtacggttgtatatacatttggcagaaagatatcatatacagtatgtcaatagattgatatttttgtccgatacaaccatgcagtatatagttagattttgttttatcatttattttattgattgatgtaatgtttagtgttgtcttaacctctattagtaaagtatttgattacaattaatttaatttattttttttttactcagatataaatatttccaacccaagtgggaaaaattcgaaacattccgtatgaattaattaatattgcggtcaggtggtcacggtcacgattgggcggtccggtgcggtttaacggcggtcacaggtcaccatatagcggtcaaccagtgaacggtcaccgtgcgtagcggtcggtcacggtgcggtcccaacagtgcgtgtggtaaagtagagacgtttcagggactgta
gi|2 : TGTGGTTGA--ACGGGGT-A--CATC----GT---CC---TGTTTGTTTGTGAA--TG-CATA--ATTTTT---AGGGGTGTTT------GTTAA-TTAGCAG-G-ATATACAT-ATGCAATTCCTCGTG-----------TCCGAAA-AT-GTTG-------AAGCC--A-G-----A-TA-G-TACGC-A----CCTGGTTATA-GGG-TGTA--------ATAAAAAAAAACCGCCTAACTATTATAAGTTTTTTTCATTTTT-TTGC-ACAT-ACTG-TGTCAT-TTAGAAAAAAAAATATATC---ATGAG-AAAATACG--TTGT--ACGGTT-GTATATACATT------------TGGCAGAAAGATATCATATACAGTATG-TCAATA-GAT-TG-ATATTTTTGTCCGATACA--ACCATGC-AGTAT-ATAGTTAGATTTTGTTTTATCATTTAT--TTTATTGA-TTG---ATGTAATGTTTAGTGTTGTCTTAACCTCT----ATTAGTAAAGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGTATGAATTAATTAAT---ATTGCGG---TCAG---GTGGTCA---------------CGGT---CA--CGATTGGGCGGTCCGGTGC-G-GTTT--AACG-GCGGTCACAGGTCACCATA-TAGCGGTCAA-CCAGTGAAC----GGTCACCGTGCGTAGCGGTCGGTCACGGTGCGGTCCCAA-CAGTGCG-TGTGGTAAAGTAGAGACGTTT-CAGGGACTGT
gi|6 : acaaactgattCATTTTGCGGTCCAGCGTGCGGTCACCGTTCGCAGTCAAGCGGT---TATCC-GTT--GCGTCCAGTCGGTC-G--TC-ACCGTGCGGTa
gi|5 : acagtccctgaaacgttctactttacaaaacaatttttccggcggtcaccggtcaGCATTCACCGTGAATTCA---------GC----CATTTTCCATTC-ATT--GT--TCAG-CG-TGCG--TTCATCGTGCGTTCACCGTTAACTAAATTG-CGTTC-A-GC-GT-G-CG---G-TCAACGTTCCC---------TCTGCATACGGT--CA-CC-GTGTG-TGTGGTAAAGTAG-AATCTTT-CAGGGACTGT
gi|6 : agtccctgaaacgttctactttaccatttttccgtgcgttcgccatGCGGTCA----------C----CGGT---CA--C-ATTTTGCGGTC------------C--AGCGTGCGGTCACCGTTC-GCAGTCAAGCGGTT-ATCC-GT-TGCGTCCAGTCG--GT-CGT----------CACCGTGCGGT--
gi|9 : acagtccctgaaacgttctactttacaaaacaatttttccg---GGTCACCATGCGT---------TCTGAGTGCGGT--CA
gi|5 : acagtctgtgaaacgttctagtacttctacttaaccatttttccatgcTGGTAAAGTAG-AACGTTT-CAGGGACTccgttca
gi|16 : TGGTAAAGTAG-AACGTTT-CGGGGACTGTtttttccgtgcgttcgccatgcattcaccgtgaattcagccattttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|17 : TGGTAAAGTAG-AACGTTT-CAGGGATTGttttt
gi|13 : TGGTAAAGTAGAAACGTTT-CAGGGAttttt
gi|14 : TGGTAAAGTAG-AAGGTTT-CAGGGACTGatttttcgtagcggt
gi|12 : TGGTAAAGTAG-AACGTTTTCAGGGACTtttttcc
gi|15 : TGGTAAAGTAG-AACATTT-CAGGGACtttatttccgtgcggtc
gi|10 : cTGGTAAAGTA-GAACGTTT-TAGGtttttcc
gi|6 : GTAAAGTAG-AACGTTT-CAGGGACTGTatttttcgtgggttgtcagcgttggtcgccgtgcgttac
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CTATTCTTTCAATCATTGATCAGCGTGCGTTCACTTTCGTTCTCCAATGCGTTTCACCTATCACCTAATTGCGTTCAGGCGTGCGCGTCA
Unaligned ( gi|11 ): CAGTCCTGAAACGGTCTACGTTTACATTTTTCCGTGCGTCACCGGTCAC
Alignments
lowQualScore : 222222222 2 1 11 1 33 11 222 2 11 22 1 11 444 1 4 333 33333 33333 1 2 33 77777777 1 33 1 11111 1 111111 222222222 1111 111 11 1 11 111 222222 111 1 1 3333333333333 555555555555 1 1 3333333 11 222 1 111 1 1 33333333333333333 88888888888 1 1 1 11 11 2 1 22222222 1111 111 1 333333333333333 22 2 11 1 11 5555555 222 111 33333 22 1 222 4444 2 222 1 11 1 22222222 1 2 1 22 22 22222 33 111 111 22 222 444444444444444444 111 22222 2222222 111 2222222222 11 1
lowQualScore : 222222222 3 22 2 44 0 6 0 99 1 88 555 6 0 1 3 88 77 5 66 1 444 5 0 444 6 99999 6 66666 1 1 5 6 3 22 00 11111111 2 00 5 99999 1 0 2 444444 333333333 8888 777 33 0 66 777 888888 111 2 0 0 9999999999999 444444444444 0 0 2222222 33 3 666 0 666 0 999 0 55555555555555555 3 00000000000 3 11 3 3 44 33 3 2 7 22 1 11111111 7 9999 888 1 4 0 666666666666666 6 22 3 6 33 3 44 888 1111111 666 555 6 55555 7 00 3 666 1 1 4444 1 3 1 999 5 77 00 5 3 4 4 4 99999999 5 0 4 5 77 33 4 33333 1 55 6 0 666 777 33 222 8 000000000000000000 1 111 5 88888 999 8 8 6666666 2 2 111 2 8888888888 888 6 99 44 7 3 3 3 3 3
lowQualScore : ......... . .. . .. . . . .. . .. ... . . . . .. .. . .. . ... . . ... . ..... . ..... . . . . . .. .. ........ . .. . ..... . . . ...... ......... .... ... .. . .. ... ...... ... . . . ............. ............ . . ....... .. . ... . ... . ... . ................. . ........... . .. . . .. .. . . . .. . ........ . .... ... . . . ............... . .. . . .. . .. ... ....... ... ... . ..... . .. . ... . . .... . . . ... . .. .. . . . . . ........ . . . . .. .. . ..... . .. . . ... ... .. ... . .................. . ... . ..... ... . . ....... . . ... . .......... ... . .. .. . . . . . .
lowQualScore : 000000000 3 00 0 00 7 0 7 00 0 33 000 7 7 0 7 33 55 0 00 0 000 5 0 555 0 55555 0 00000 0 0 5 0 7 00 77 77777777 3 33 0 77777 0 0 5 888888 555555555 2222 555 88 0 55 555 888888 000 0 0 0 2222222222222 555555555555 0 0 5555555 88 2 222 0 222 0 000 0 22222222222222222 2 77777777777 3 77 3 3 77 33 7 0 3 00 0 33333333 3 3333 333 0 0 7 000000000000000 0 33 7 7 00 3 00 333 7777777 333 333 7 33333 3 77 3 333 0 0 7777 0 7 0 777 0 77 33 5 0 0 0 0 55555555 5 0 0 5 55 00 0 00000 0 00 7 2 000 555 66 888 0 777777777777777777 0 777 0 22222 222 0 0 9999999 5 5 777 5 3333333333 777 7 22 00 3 3 3 3 3 3
consensus : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGTGCTTTTTT-CTTCGCATT-GACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATC-TTTTTAGGGGTGTTTGTTAATT-GCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC-CTTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACA--GT-GCTATAAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACATAACTGGTG-CATTTCAGAAAAAAAATAATCTCAC-ATGAGAAAAATAC-TTTTGT-A-CGTT-TGTATATACATTT--AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAACA-CATGTAAGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACCTATAT--ATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATTAGCGGT-C-A-CC-GTAGCG---GGTCACCG---TGCGT---------TC-NNCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
Reference ( family-23 ) : CAGTCGGTC-G-T-CAC-GTGCGGTCCAGCNNTGCAGGTGCTTCTTTTCTTCGCATTTGNCATTCGGA--ACT--CCCAAGGAAAGAGANCGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGNTNAATGCATNATTTTTAGGGGTGTTTGTTAATTAGCAGGATATACATATGCANTTCCTCGTGTCT--CGNAAATCNTTGAAGCCATACATGTACGCTCTGTANNCCTGAAGATGTCTACCGATTTTACAATTGACCTAATACAANNCTTANTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--CGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCGG-G-TATAC---CGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACA--G--GCTATAAAAAAAANCCGCCTANNTATTATA-AGTTTTTTTCNCTTTT-TTGC-ACATAACTGGTGTCATTTCAGAAAAAAAANNATNTCAC-ATGAGAAAAATACNTTTTGT-ANCGNTNTGCATATACATTTAGAACATACTTTGNCGGAAAGATATCATGTACAGTATGCTCNATA-GATCTGCNCATTTCNGTCCGATACAATACCATGCAAGTATCATAGTTAGGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTGTANTNTTTAGTGTTNTCTTAACCTNTATATATTAGTAANGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGT-ATGAATTAATTAATCATTNCGG-GTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CANCGTGCGGTCAC---CGTTCACCANACTAGCGGT-C-A-CC-GTNGCG---GGTCACCG---TGCGT---------TC-NNCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|1 : CAGTCGGTC-G-T-CACCGTGCGGTCCAGCAATACAGGTGCTTTTTCACTTTGCAT--GACATTCGGGGTACTAACTCAAAGAAAGAAAGCGT-GCTACGTGTCCACCCATTTACAGATGCTGCC-GTGTTT-TTTAATGCATC-TTTTTAAGGGTGTTTGTTAATT-GCAGG---TATATATGTATTTCCTTGTGGCTTGCGGAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AACACT-ACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAA-T-GCAG-G-TATAT---TGT--ATGTTCCTCGTG-----------CCCCTAA-AT-TTTG-------AAGCC--ATGC-CATG-TA-G-CCCGT-AATCCCTTGGATGT--GCG-TGTACA--GTTGCTATAAAAAAAAA------AAAAATTAAG-GGTTTTTTTTTCTTTTGTTGCGACAT-ACTGGTG-CATGTTAGAAAAAAAATAATCTCCCTAT---AGAAATAC---TTGTCAACGTTTTGTATATACATT---AGCATACTTTACCAGAA--ATA-CATGTACAGTATGCTTTATACGATCTGCATATTT---TC----ATAACAACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTATGATCCATTGAGTTGAA-ATGTATTGTTT--T-TTTTCTT-ACCTATA---ATTATTAATGTA--TGG-TACAAGTAATTTATTTAATTTATTTTTTAGGCTAATGGA-ATAGAATATATCTAACCC-AGTGGAAAAAAATTCCGAAACATTCCGGAATGATTTAAT--GTCATTGTGGCGTTCAGCGTGCGGTCAAGCCGGT---CA--CATT--GCGGT-CA----GTCGCTG-G-T--AGCGTGCGGTCAC---CGGTCAGCAAATTGGCGGT-C-A-CC-GTAACG---GGTCACCG---TGCGT---------TC-TCCGTGCG-GT--CAACCAGTGCGATGTGGTAAAGTAGGA-A-CG-TTTCAGGGACTGT
gi|10 : TGGTAAAGTA-GA-A-CG-TTTTAGG
gi|12 : TGGTAAAGTA-GA-A-CGTTTTCAGGGACTatttttcgtgggttgtcagcgttggtcgccgtgcgttac
gi|13 : TGGTAAAGTA-GA-AACG-TTTCAGGGAtttatttccgtgcggtc
gi|14 : TGGTAAAGTA-GA-A-GG-TTTCAGGGACTGatttttcgtagcggt
gi|15 : TGGTAAAGTA-GA-A-CA-TTTCAGGGACtttttcc
gi|16 : cTGGTAAAGTA-GA-A-CG-TTTCGGGGACTGTtttttcc
gi|17 : TGGTAAAGTA-GA-A-CG-TTTCAGGGATTGttttt
gi|2 : TGTGGTTGA--ACGGGGT-A--CATC----GT---CC---TGTTTGTTTGTGAA--TG-CATA--ATTTTT---AGGGGTGTTT------GTTAAT-TAGCAG-GATATACATATGC--A-ATTCCTCGTG-----------TCCGAAA-AT-GTTG-------AAGCC--A-G-----A-TA-G-TACGC-A---CC-TGGTTATA-GGG-TGTA----------ATAAAAAAAAACCGCCTAACTATTATA-AGTTTTTTTCATTTTT-TTGC-ACATA-CTG-TGTCATTT-AGAAAAAAAAATATATCA---TGAGAAAA-TACGTT--GT-A-CGGT-TGTATATACATTT------------GGCAGAAAGATATCATATACAGTATG-TCAATA-GAT-TG-ATATTTTTGTCCGATACAA--CCATGCA-GTAT-ATAGTTAGATTTTGTTTTATCATTTAT--TTTATTGA-TTGA---TGTAATGTTTAGTGTTGTCTTAACCTCTAT----TAGTAAAGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGT-ATGAATTAATTAAT-ATTGCGG---TCAG---GTGGTC-A--CGGT---CA-CGATTGGGCGGTCCG----G-TG-CG-GTT-TAACG-GCGGTCAC---AGGTCACCATA-TAGCGGT-CAA-CCAGTGAAC---GGTCACCG---TGCGTAGCGGTCGGTC-ACGGTGCG-GTCCCAA-CAGTGCG-TGTGGTAAAGTA-GAGA-CG-TTTCAGGGACTGTttttt
gi|3 : acaaactgattGGTC-GGT-CAC-GTGCGGTC-AGCGGT-CAGG--CTTTTTTTCTTTGCATT-GACATTCGGA--ACT--CCAAAG---AGAAAGTGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGTTTAATGCATC--TTTTAGGGGTGTT-GTTAATT-GCAGGTTATATGTAT-----TCCTTGTG-CT--CGTAAATCCT-GAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAATTG--CTAATAAAAA---TACTGTG-TTGACAAGGGG--TA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATA----TGT--A--TTCCTCGTG------------CCCTAATAT-TTTG-------AAGCC--ATG--CATG-TA-C-CCCGT-AAT-CC-TGGATGT---CG-T-TACA--GT-GCT-TAAAAAAAA-------------TATATAGTTTTTTTTTCTTTT-TTGC-ACATAACT-GTA-CATTTCAG-AAAAAAATAATCTCAC-ATGAG-AAAATACTTTTTGT-ATCGTTATACATATACATTTAGAACATACTTT-ACAGAAA-ATA-CATGTACAGTATGCT-TATA-GA-CTGCTCATTTCA-----ATACAATA-CATGTAAGTATCAT-GT--GG-TTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTATATTTTTT--T-TTTTCTT-ACCTATATATATTA-TAAT-TATa
gi|4 : AGCCCTACATGTACAATCTGTATACCTGAAGATGTCTACCGATTTTACA--TGACTTAATACAACCCTTAATGTG-TTGACAAGGGGATCACCCACCAACAGCAAACCGATCGTTTGTTT---AACTTGTCATATAATTCTTTGGAAGGATGCCTATATAAGTTAATGT-GCGGAG-TAT-C---TGTCAA-GTCTCACGTGGGCGCTGCTGTTCACTAA-ATATTTAATGTTGTAAGCCCAATGAACATGATACGTCCCGTGAATCCC-TGGATGTCAACGTTGTACAGTG--GCTA
gi|5 : TGGTAAAGTA-GA-A-CG-TTTCAGGGACT
gi|5 : TTCACCGTGAATTC-AGCCATTTTCCATTCATT--GT--T-CA----G-CG-TGCG-TTCATCGTGCGTTCAC---CGTTAACTAAATT-GCGTT-C-A-GC-GT-GCG---G-TCAACG---TTCCC---------TC-TGCATACG-GT--CA-CC-GTGTG-TGTGGTAAAGTA-GA-A-TC-TTTCAGGGACTGTtttttccgtgcgttcgccatgcattcaccgtgaattcagccattttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|6 : agtccctgaaacgttctactttaccatttttccgtgcgttcgccatgcaGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|6 : GCGGTC-A-CCGGT---CA--CATTTTGCGGT-C-----------------CAGCGTGCGGTCAC---CGTTCG-CAGTCAAGCGGT-T-ATCC-GTTGCGTCCAGTCG--G---T-CG----------TC-ACCGTGCG-GT--aaaacaatttttccggcggtcaccggtcacattttgcggtccagcgtgcggtcaccgttcgcagtcaagcggttatccgttgcgtccagtcggtcgtcaccgtgcggt
gi|7 : acagtccctgaaacgttctactttacaaaacaatttttccg-TG-A-T-CAGCGTGCGTTCACTTTCGTTCTCCAA--T-GCGTTTC-A-CC--TA--------TCACCTAATTGCGT---------TCAGGCGTGCGCGT--CA
gi|8 : ctattctttcaatcatGGTCCG-TACA--GTGCGGTC-AGCCTTGCAA-TGTTTCTTT-CTTCGCATT-GCCATTCGGA--ACT---CCAAGGAAAAAGATCGT---TACATGT--A
gi|9 : TCCAT---GCGGT-CACCATG-CG-T----T-CTGAGTGCGGTCAC---CGTTCA
gi|9 : acagtctgtgaaacgttctagtacttctacttaaccatttt---GGTCACCA---TGCGT---------TC-TGAGTGCG-GT--CA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CAGTCCTGAAACGGTCTACGTTTACATTTTTCCGTGCGTCACCGGTCAC
Alignments
lowQualScore : 222222222 1 1 1111 1 11 222 22 11 11 1 1 1 1 222 22222 1 11 1 1 11 44444444 1 11 1 2222 1 111111 222222222 111 111 11 1 11 111 222222 111 1 1 22222 22222 555555555555 1 1 3333333 11 222 1 111 1 1 333 1 1111111111 66666666666 1 1 1 2 2 1 1 1 2222 22 1 1111 3333333 11 1 1 1 1 11 5555555 22 2 1 11 22 1 222 2222 1 222 2 11 1 11 11 1 1 1 11 11 22222 11 111 111 22 222 444444444444444444 111 2222 4444444444444444444444444444444444 111 11 11 1
lowQualScore : 222222222 3 44 2 0000 3 0 7 88 555 6 00 0 88 77 5 5 5 5 111 77777 5 88 1 5 3 88 11111111 2 88 3 3333 0 2 444444 333333333 666 777 33 0 66 777 888888 111 0 0 77777 11111 444444444444 0 0 2222222 33 3 666 0 666 0 999 0 000 0 2 2 9999999999 22222222222 3 3 3 3 3 3 2 7 7 7 3 7777 00 3 6666 7777777 33 7 3 3 6 2 3 44 6 4444444 7 00 3 6 3 88 7 00 3 444 2222 3 555 7 6 6 00 5 1 1 1 1 77 1 88 5 5 1 5 88 66 1 22222 00 6 0 666 777 33 222 8 000000000000000000 111 88 1111 8 8 8 0000000000000000000000000000000000 000 8 11 44 7 3 3 3 3 3
lowQualScore : ......... . .. . .... . . . .. ... . .. . .. .. . . . . ... ..... . .. . . . .. ........ . .. . .... . . ...... ......... ... ... .. . .. ... ...... ... . . ..... ..... ............ . . ....... .. . ... . ... . ... . ... . . . .......... ........... . . . . . . . . . . . .... .. . .... ....... .. . . . . . . .. . ....... . .. . . . .. . .. . ... .... . ... . . . .. . . . . . .. . .. . . . . .. .. . ..... .. . . ... ... .. ... . .................. ... .. .... . . . .................................. ... . .. .. . . . . . .
lowQualScore : 000000000 3 77 0 0000 3 7 3 33 000 7 00 7 33 55 0 0 5 5 555 00000 0 00 0 0 3 33 77777777 0 33 3 3333 0 5 888888 555555555 222 555 88 0 55 555 888888 000 0 0 22222 22222 555555555555 0 0 5555555 88 2 222 0 222 0 000 0 222 0 5 5 1111111111 00000000000 3 3 3 7 3 3 0 3 3 7 3 7777 77 3 7777 3333333 00 3 3 3 7 0 3 00 7 3333333 3 77 7 7 3 33 3 77 3 333 7777 3 777 3 7 7 33 5 0 0 0 0 55 0 00 5 0 0 5 55 55 0 55555 33 7 2 000 555 66 888 0 777777777777777777 777 88 2222 0 0 0 2222222222222222222222222222222222 000 0 00 00 3 3 3 3 3 3
consensus : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AACA-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAG-AAAATAC-TTTTGTA-CG-TT-TGTATATACA-TTAG--CATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATT-AGCG-GTC-A-CCGTAGCG--CGGTCACC---GTGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
Reference ( family-23 ) : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGTGCTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AACC-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACATAACTGGTG-CATTTCAGAAAAAAAATAATCTCAC-ATGAGAAAAATAC-TTTTGTA-CG-TT-TGTATATACATTTAG--CATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGTAAGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATT-AGCG-GTC-A-CCGTAGCG---GGTCACC---GTGCGT---------TC-NNCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|1 : CAGTCGGTC-G-T-CACCGTGCGGTCCAGCAATACAGGTGCTTTTTCACTTTGCAT-GACATTCGGGGTACTAACTCAAAGAAAGAAAGCGT-GCTACGTGTCCACCCATTTACAGATGCTGCC-GTGTTT-TTTAATGCATCTTTTTAAGGGTGTTTGTTAATTGCAGGT---ATATATGTATTTCCTTGTGGCTTGCGGAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AACA-CTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAA-T-GCAG-G-TATAT---TGT--ATGTTCCTCGTG-----------CCCCTAA-AT-TTTG-------AAGCC--ATGC-CATG-TA-G-CCCGT-AATCCCTTGGATGT--GCG-TGTACAGTT-GCTATAAAAAAAAAAA------AA--ATTAAG-GGTTTTTTTTTCTTTTGTTGCGACAT-ACTGGTG-CATGTTAGAAAAAAAATAATCTCCCTAT---AGAAATAC-TTGTCAA-CGTTT-TGTATATACA-TTAG--CATACTTTACCAG-AA-ATA-CATGTACAGTATGCTTTATACGATCTGCATATTT---TC--AT--AACAACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTATGATCCATTGAGTTGAA-ATGTATTGTTT--T-TTTTCTT-ACC--TATA-ATTATTAATGTA--TGG-TACAAGTAATTTATTTAATTTATTTTTTAGGCTAATGGA-ATAGAATATATCTAACCC-AGTGGAAAAAAATTCCGAAACATTCCGGAATGATTTAAT--GTCATTGTGGCGTTCAGCGTGCGGTCAAGCCGGT---CA--CATT--GCGGT-CA----GTCGCTG-G-T--AGCGTGCGGTCAC---CGGTCAGCAAATT-GGCG-GTC-A-CCGTAACG---GGTCACC---GTGCGT---------TC-TCCGTGCG-GT--CAACCAGTGCGATGTGGTAAAGTAGGA-A-CG-TTTCAGGGACTGT
gi|10 : TGGTAAAGTA-GA-A-CG-TTTTAGG
gi|12 : TGGTAAAGTA-GA-A-CGTTTTCAGGGACTatttttcgtgggttgtcagcgttggtcgccgtgcgttac
gi|13 : TGGTAAAGTA-GA-AACG-TTTCAGGGAtttatttccgtgcggtc
gi|14 : TGGTAAAGTA-GA-A-GG-TTTCAGGGACTGatttttcgtagcggt
gi|15 : TGGTAAAGTA-GA-A-CA-TTTCAGGGACtttttcc
gi|16 : cTGGTAAAGTA-GA-A-CG-TTTCGGGGACTGTtttttcc
gi|17 : TGGTAAAGTA-GA-A-CG-TTTCAGGGATTGttttt
gi|2 : TGTGGTTGA--ACGGGGT-A--CATC----GT---CC---TGTTTGTTTGTGAA--TG-CATA--ATTTTT---AGGGGTGTTT------GTTAAT-TAGCAG-GATATACATATGC--A-ATTCCTCGTG-----------TCCGAAA-AT-GTTG-------AAGCC--A-G-----A-TA-G-TACGC-A---CC-TGGTTATA-GGG-TGTA---------AT--AAAAAAAAACCGCCTAACTATTATA-AGTTTTTTTCATTTTT-TTGC-ACAT-ACT-GTGTCATTT-AGAAAAAAA--AATATATC-ATGAG-AAAATAC--GTTGTA-CG-GT-TGTATATACA------------TTTGGCAGAAAGATATCATATACAGTATG-TCAATA-GAT-TG-ATATTTTTGTCCGATACAAC--CATGC-AGTAT-ATAGTTAGATTTTGTTTTATCATTTAT--TTTATTGA-TTGA---TGTAATGTTTAGTGTTGTCTTAACC----TCTATTAGTAAAGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGT-ATGAATTAATTAAT-ATTGCGG---TCAG---GTGGTC-A--CGGT---CA-CGATTGGGCGGTCCG----G-TG-CG-GTT-TAACG-GCGGTCAC---AGGTCACCATA-T-AGCG-GTCAA-CC--AGTGAACGGTCACC---GTGCGTAGCGGTCGGTC-ACGGTGCG-GTCCCAA-CAGTGCG-TGTGGTAAAGTA-GAGA-CG-TTTCAGGGACTGTttttt
gi|3 : acaaactgattGGTC-GGT-CAC-GTGCGGTC-AGCGGT-CAGGC-TTTTTTT-CTTTGCATTGACATTCGGA--ACT--CCAAAG---AGAAAGTGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTT-AGGGGTGTT-GTTAATTGCAGGTTATATGTAT-----TCCTTGTG-CT--CGTAAATCC-TGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAATTG--CTAATA-AAAA-T-ACTGTG-TTGACAAGGGG--TA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATA----TGT--A--TTCCTCGTG------------CCCTAATAT-TTTG-------AAGCC--ATG--CATG-TA-C-CCCGT-AAT-CC-TGGATGT---CG-T-TACAG-T-GCT-T--AAAAAAAA-------------TATATAGTTTTTTTTTCTTTT-TTGC-ACATAACT-GTA-CATTTCAG-AAAAAAATAATCTCAC-ATGAG-AAAATACTTTTTGTATCG-TTATACATATACATTTAGAACATACTTT-ACAGAAA-ATA-CATGTACAGTATGCT-TATA-GA-CTGCTCATTTC---A--ATACAAT-ACATGTAAGTATCAT-GT--GG-TTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTATATTTTTT--T-TTTTCTT-ACCTATATATATTA-TAAT-TATa
gi|4 : AGCCCTACATGTACAATCTGTATACCTGAAGATGTCTACCGATTTTACA--TGACTTAATACAACCCTTAATGTG-TTGACAAGGGGATCACCCACCAACAGCAAACCGATCGTTTGTTT---AACTTGTCATATAATTCTTTGGAAGGATGCCTATATAAGTTAATGT-GCGGAG-TAT-C---TGTCAA-GTCTCACGTGGGCGCTGCTGTTCACTAA-ATATTTAATGTTGTAAGCCCAATGAACATGATACGTCCCGTGAATCCC-TGGATGTCAACGTTGTACAG-TGGCTA
gi|5 : TGGTAAAGTA-GA-A-CG-TTTCAGGGACT
gi|5 : GCATTCACCGTGAATTC-AGCCATTTTCCATTCATT--GT--T-CA----G-CG-TGCG-TTCATCGTGCGTTCAC---CGTTAACTAAATT--GCG-TTC-A-GCGT-GCG---G-TCAAC---GTTCCC---------TC-TGCATACG-GT--CA-CC-GTGTG-TGTGGTAAAGTA-GA-A-TC-TTTCAGGGACTGTtttttccgtgcgttcgccatgcattcaccgtgaattcagccattttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|6 : agtccctgaaacgttctactttaccatttttccgtgcgttcgccatGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|6 : GCGGTC-A-CCGGT---CA--CATTTTGCGGT-C-----------------CAGCGTGCGGTCAC---CGTTCGC--AGTCAAGCG-GTT-ATCCGTTGCGTCCAGTCG-----GT-CG----------TC-ACCGTGCG-GT--aaaacaatttttccggcggtcaccggtcacattttgcggtccagcgtgcggtcaccgttcgcagtcaagcggttatccgttgcgtccagtcggtcgtcaccgtgcggt
gi|7 : acagtccctgaaacgttctactttacaaaacaatttttccg-TG-A-T-CAGCGTGCGTTCACTTTCGTTCTCC-AAT---GCGTTTC-A-CC-TA--------TCACCTAATTGCGT---------TCAGGCGTGCGCGT--CA
gi|8 : ctattctttcaatcatGGTCCG-TACA--GTGCGGTC-AGCCTTGCAA-TGTTTCTTT-CTTCGCATTGCCATTCGGA--ACT---CCAAGGAAAAAGATCGT---TACATGT--A
gi|9 : TCCAT---GCGGT-CACCATG-CG-T----T-CTGAGTGCGGTCAC---CGTTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CAGTCCTGAAACGGTCTACGTTTACATTTTTCCGTGCGTCACCGGTCAC
Alignments
lowQualScore : 222222222 1 1 111 1 11 222 22 11 11 1 1 1 1 222 22222 1 11 1 1 11 44444444 1 11 1 22222222 1 111111 222222222 111 111 11 1 11 111 222222 111 1 1 22222 22222 555555555555 1 1 3333333 11 222 1 111 1 1 333 1 1111111111 66666666666 1 1 1 1 1 1 1 1 22 1 1111 3333333 11 1 1 1 1 11 5555555 22 1 1 11 22 1 222 2222 1 222 2 11 1 11 11 1 1 1 11 11 22222 11 111 111 22 222 444444444444444444 111 2222 333333333 111 222222222 1
lowQualScore : 222222222 3 44 2 444 3 0 7 88 555 6 00 0 88 77 5 5 5 5 111 77777 5 88 1 5 3 88 11111111 2 88 0 44444444 0 2 444444 333333333 666 777 33 0 66 777 888888 111 0 0 77777 11111 444444444444 0 0 2222222 33 3 666 0 666 0 999 0 000 0 2 2 9999999999 22222222222 3 3 3 3 3 3 2 7 7 1 3 6 7 00 3 6666 2222222 33 7 3 3 6 2 3 44 6 4444444 7 00 3 6 3 88 7 00 3 444 2222 3 555 7 6 6 00 5 1 1 1 1 77 1 88 5 5 1 5 88 66 1 22222 00 6 0 666 777 33 222 8 000000000000000000 111 88 1111 8 8 8 555555555 2 111 2 666666666 77 6 99 99 3 3 3 3 3 3
lowQualScore : ......... . .. . ... . . . .. ... . .. . .. .. . . . . ... ..... . .. . . . .. ........ . .. . ........ . . ...... ......... ... ... .. . .. ... ...... ... . . ..... ..... ............ . . ....... .. . ... . ... . ... . ... . . . .......... ........... . . . . . . . . . . . . . .. . .... ....... .. . . . . . . .. . ....... . .. . . . .. . .. . ... .... . ... . . . .. . . . . . .. . .. . . . . .. .. . ..... .. . . ... ... .. ... . .................. ... .. .... . . . ......... . ... . ......... .. . .. .. . . . . . .
lowQualScore : 000000000 3 77 0 000 3 7 3 33 000 7 00 7 33 55 0 0 5 5 555 00000 0 00 0 0 3 33 77777777 0 33 0 55555555 0 5 888888 555555555 222 555 88 0 55 555 888888 000 0 0 22222 22222 555555555555 0 0 5555555 88 2 222 0 222 0 000 0 222 0 5 5 1111111111 00000000000 3 3 3 3 3 3 0 3 3 0 3 7 3 77 3 7777 3333333 00 3 3 3 7 0 3 00 7 3333333 3 77 3 7 3 33 3 77 3 333 7777 3 777 3 7 7 33 5 0 0 0 0 55 0 00 5 0 0 5 55 55 0 55555 33 7 2 000 555 66 888 0 777777777777777777 777 88 2222 0 0 0 666666666 5 777 5 777777777 77 7 22 55 2 3 3 3 3 3
consensus : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATTA-GCG-GTC-A-CCGTAGCG--CGGTCGCC---GTGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
Reference ( family-23 ) : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATTA-GCG-GTC-A-CCGTAGCG--CGGTCACC---GTGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|1 : CAGTCGGTC-G-T-CACCGTGCGGTCCAGCAATACAGGTGCTTTTTCACTTTGCAT-GACATTCGGGGTACTAACTCAAAGAAAGAAAGCGT-GCTACGTGTCCACCCATTTACAGATGCTGCC-GTGTTT-TTTAATGCATCTTTTTAAGGGTGTTTGTTAATTGCAGGT---ATATATGTATTTCCTTGTGGCTTGCGGAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-CTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAA-T-GCAG-G-TATAT---TGT--ATGTTCCTCGTG-----------CCCCTAA-AT-TTTG-------AAGCC--ATGC-CATG-TA-G-CCCGT-AATCCCTTGGATGT--GCG-TGTACAGTT-GCTATAAAAAAAAAAA------AA--ATTAAG-GGTTTTTTTTTCTTTTGTTGCGACAT-ACTGGTG-CATGTTAGAAAAAAAATAATCTCCCTAT-AG-AAATAC-TTGTCAA-CGTTT-TGTATATACATT---AGCATACTTTACCAG-AA-ATA-CATGTACAGTATGCTTTATACGATCTGCATATTT---TC--AT--AACAACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTATGATCCATTGAGTTGAA-ATGTATTGTTT--T-TTTTCTT-ACC--TATA-ATTATTAATGTA--TGG-TACAAGTAATTTATTTAATTTATTTTTTAGGCTAATGGA-ATAGAATATATCTAACCC-AGTGGAAAAAAATTCCGAAACATTCCGGAATGATTTAAT--GTCATTGTGGCGTTCAGCGTGCGGTCAAGCCGGT---CA--CATT--GCGGT-CA----GTCGCTG-G-T--AGCGTGCGGTCAC---CGGTCAGCAAATTG-GCG-GTC-A-CCGTAACG---GGTCACC---GTGCGT---------TC-TCCGTGCG-GT--CAACCAGTGCGATGTGGTAAAGTAGGA-A-CG-TTTCAGGGACTGT
gi|10 : TGGTAAAGTA-GA-A-CG-TTTTAGG
gi|12 : TGGTAAAGTA-GA-A-CGTTTTCAGGGACTatttttcgtgggttgtcagcgttggtcgccgtgcgttac
gi|13 : TGGTAAAGTA-GA-AACG-TTTCAGGGAtttatttccgtgcggtc
gi|14 : TGGTAAAGTA-GA-A-GG-TTTCAGGGACTGatttttcgtagcggt
gi|15 : TGGTAAAGTA-GA-A-CA-TTTCAGGGACtttttcc
gi|16 : cTGGTAAAGTA-GA-A-CG-TTTCGGGGACTGTtttttcc
gi|17 : TGGTAAAGTA-GA-A-CG-TTTCAGGGATTGttttt
gi|2 : ACA-AACTGA-TT--TGTGGTTGA--ACGGGGT-A--CATC----GT---CC---TGTTTGTTTGTGAA--TG-CATA--ATTTTT---AGGGGTGTTT------GTTAAT-TAGCAG-GATATACATATGC--A-ATTCCTCGTG-----------TCCGAAA-AT-GTTG-------AAGCC--A-G-----A-TA-G-TACGC-A---CC-TGGTTATA-GGG-TGTA---------AT--AAAAAAAAACCGCCTAACTATTATA-AGTTTTTTTCATTTTT-TTGC-ACAT-ACT-GTGTCATTT-AGAAAAAAA--AATATATC-ATGAGAAAATAC--GTTGTA-CG-GT-TGTATATACA------------TTTGGCAGAAAGATATCATATACAGTATG-TCAATA-GAT-TG-ATATTTTTGTCCGATACAAC--CATGC-AGTAT-ATAGTTAGATTTTGTTTTATCATTTAT--TTTATTGA-TTGA---TGTAATGTTTAGTGTTGTCTTAACC----TCTATTAGTAAAGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGT-ATGAATTAATTAAT-ATTGCGG---TCAG---GTGGTC-A--CGGT---CA-CGATTGGGCGGTCCG----G-TG-CG-GTT-TAACG-GCGGTCAC---AGGTCACCATA-TA-GCG-GTCAA-CC--AGTGAACGGTCACC---GTGCGTAGCGGTCGGTC-ACGGTGCG-GTCCCAA-CAGTGCG-TGTGGTAAAGTA-GAGA-CG-TTTCAGGGACTGTttttt
gi|3 : GGTC-GGT-CAC-GTGCGGTC-AGCGGT-CAGGC-TTTTTTT-CTTTGCATTGACATTCGGA--ACT--CCAAAG---AGAAAGTGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTT-AGGGGTGTT-GTTAATTGCAGGTTATATGTAT-----TCCTTGTG-CT--CGTAAATCC-TGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAATTG--CTAATA-AAA--A-T-ACTGTG-TTGACAAGGGG--TA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATA----TGT--A--TTCCTCGTG------------CCCTAATAT-TTTG-------AAGCC--ATG--CATG-TA-C-CCCGT-AAT-CC-TGGATGT---CG-T-TACAG-T-GCT-T--AAAAAAAA-------------TATATAGTTTTTTTTTCTTTT-TTGC-ACATAACT-GTA-CATTTCAG-AAAAAAATAATCTCAC-ATGAGAAAATACTTTTTGTATCG-TTATACATATACATTTAGAACATACTTT-ACAGAAA-ATA-CATGTACAGTATGCT-TATA-GA-CTGCTCATTTC---A--ATACAAT-ACATGTAAGTATCAT-GT--GG-TTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTATATTTTTT--T-TTTTCTT-ACCTATATATATTA-TAAT-TATa
gi|4 : AGCCCTACATGTACAATCTGTATACCTGAAGATGTCTACCGATTTTACA--TGACTTAATACAAC--CCTTAATGTG-TTGACAAGGGGATCACCCACCAACAGCAAACCGATCGTTTGTTT---AACTTGTCATATAATTCTTTGGAAGGATGCCTATATAAGTTAATGT-GCGGAG-TAT-C---TGTCAA-GTCTCACGTGGGCGCTGCTGTTCACTAA-ATATTTAATGTTGTAAGCCCAATGAACATGATACGTCCCGTGAATCCC-TGGATGTCAACGTTGTACAG-TGGCTA
gi|5 : TGGTAAAGTA-GA-A-CG-TTTCAGGGACT
gi|5 : GTG--CGTTCGCC---ATGCAT---------TC-ACCGTGAA-TT--CAGCCAtttttccgtgcgttcgccatgcattcaccgtgaattcagccattttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|5 : agtccctgaaacgttctactttaccatttttccGCATTCACCGTGAATTC-AGCCATTTTCCATTCATT--GT--T-CA----G-CG-TGCG-TTCATCGTGCGTTCAC---CGTTAACTAAATT--GCG-TTC-A-GCGT---G--CGGTCAAC---GTTCCC---------TC-TGCATACG-GT--CA-CC-GTGTG-TGTGGTAAAGTA-GA-A-TC-TTTCAGGGACTGTttttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|6 : agtccctgaaacgttctactttaccatttttccgtgcgttcgccatGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|6 : GCGGTC-A-CCGGT---CA--CATTTTGCGGT-C-----------------CAGCGTGCGGTCAC---CGTTCGC--AGTCAAGCG-GTT-ATCCGTTGCGTCCAGTCG-----GT-CGT----------C-ACCGTGCG-GT--aaaacaatttttccggcggtcaccggtcacattttgcggtccagcgtgcggtcaccgttcgcagtcaagcggttatccgttgcgtccagtcggtcgtcaccgtgcggt
gi|7 : acagtccctgaaacgttctactttacaaaacaatttttccg-TG-A-T-CAGCGTGCGTTCACTTTCGTTCTCC-AAT---GCGTTTC-A-CC-TA--------TCACCTAATTGCGT---------TCAGGCGTGCGCGT--CA
gi|8 : ctattctttcaatcatGGTCCG-TACA--GTGCGGTC-AGCCTTGCAA-TGTTTCTTT-CTTCGCATTGCCATTCGGA--ACT---CCAAGGAAAAAGATCGT---TACATGT--A
gi|9 : TCCAT---GCGGT-CACCATG-CG-T----T-CTGAGTGCGGTCAC---CGTTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CAGTCCTGAAACGGTCTACGTTTACATTTTTCCGTGCGTCACCGGTCAC
Alignments
lowQualScore : 222222222 1 1 111 1 11 222 22 11 11 1 1 1 1 222 22222 1 11 1 1 11 44444444 1 11 1 22222222 1 111111 222222222 111 111 11 1 11 111 222222 111 1 1 22222 22222 555555555555 1 1 3333333 11 222 1 111 1 1 333 1 1111111111 66666666666 1 1 1 1 1 1 1 1 22 1 1111 3333333 11 1 1 1 1 11 5555555 22 1 1 11 22 1 222 2222 1 222 2 11 1 11 11 1 1 1 11 11 22222 11 111 111 22 222 444444444444444444 111 22222 333333333 111 2222222222 1
lowQualScore : 222222222 3 44 2 444 3 0 7 88 555 6 00 0 88 77 5 5 5 5 111 77777 5 88 1 5 3 88 11111111 2 88 0 44444444 0 2 444444 333333333 666 777 33 0 66 777 888888 111 0 0 77777 11111 444444444444 0 0 2222222 33 3 666 0 666 0 999 0 000 0 2 2 9999999999 22222222222 3 3 3 3 3 3 2 7 7 1 3 6 7 00 3 6666 2222222 33 7 3 3 6 2 3 44 6 4444444 7 00 3 6 3 88 7 00 3 444 2222 3 555 7 6 6 00 5 1 1 1 1 77 1 88 5 5 1 5 88 66 1 22222 00 6 0 666 777 33 222 8 000000000000000000 111 3 55555 999 8 555555555 33 111 2 8888888888 77 6 99 99 3 3 3 3 3 3
lowQualScore : ......... . .. . ... . . . .. ... . .. . .. .. . . . . ... ..... . .. . . . .. ........ . .. . ........ . . ...... ......... ... ... .. . .. ... ...... ... . . ..... ..... ............ . . ....... .. . ... . ... . ... . ... . . . .......... ........... . . . . . . . . . . . . . .. . .... ....... .. . . . . . . .. . ....... . .. . . . .. . .. . ... .... . ... . . . .. . . . . . .. . .. . . . . .. .. . ..... .. . . ... ... .. ... . .................. ... . ..... ... . ......... .. ... . .......... .. . .. .. . . . . . .
lowQualScore : 000000000 3 77 0 000 3 7 3 33 000 7 00 7 33 55 0 0 5 5 555 00000 0 00 0 0 3 33 77777777 0 33 0 55555555 0 5 888888 555555555 222 555 88 0 55 555 888888 000 0 0 22222 22222 555555555555 0 0 5555555 88 2 222 0 222 0 000 0 222 0 5 5 1111111111 00000000000 3 3 3 3 3 3 0 3 3 0 3 7 3 77 3 7777 3333333 00 3 3 3 7 0 3 00 7 3333333 3 77 3 7 3 33 3 77 3 333 7777 3 777 3 7 7 33 5 0 0 0 0 55 0 00 5 0 0 5 55 55 0 55555 33 7 2 000 555 66 888 0 777777777777777777 777 2 00000 222 0 666666666 22 777 5 3333333333 77 7 22 55 2 3 3 3 3 3
consensus : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATT-AGCGGT-C-A-CCGTAGCG--CGGTCGCCG---TGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
Reference ( family-23 ) : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATT-AGCGGT-C-A-CCGTAGCG--CGGTCGCCG---TGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|1 : CAGTCGGTC-G-T-CACCGTGCGGTCCAGCAATACAGGTGCTTTTTCACTTTGCAT-GACATTCGGGGTACTAACTCAAAGAAAGAAAGCGT-GCTACGTGTCCACCCATTTACAGATGCTGCC-GTGTTT-TTTAATGCATCTTTTTAAGGGTGTTTGTTAATTGCAGGT---ATATATGTATTTCCTTGTGGCTTGCGGAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-CTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAA-T-GCAG-G-TATAT---TGT--ATGTTCCTCGTG-----------CCCCTAA-AT-TTTG-------AAGCC--ATGC-CATG-TA-G-CCCGT-AATCCCTTGGATGT--GCG-TGTACAGTT-GCTATAAAAAAAAAAA------AA--ATTAAG-GGTTTTTTTTTCTTTTGTTGCGACAT-ACTGGTG-CATGTTAGAAAAAAAATAATCTCCCTAT-AG-AAATAC-TTGTCAA-CGTTT-TGTATATACATT---AGCATACTTTACCAG-AA-ATA-CATGTACAGTATGCTTTATACGATCTGCATATTT---TC--AT--AACAACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTATGATCCATTGAGTTGAA-ATGTATTGTTT--T-TTTTCTT-ACC--TATA-ATTATTAATGTA--TGG-TACAAGTAATTTATTTAATTTATTTTTTAGGCTAATGGA-ATAGAATATATCTAACCC-AGTGGAAAAAAATTCCGAAACATTCCGGAATGATTTAAT--GTCATTGTGGCGTTCAGCGTGCGGTCAAGCCGGT---CA--CATT--GCGGT-CA----GTCGCTG-G-T--AGCGTGCGGTCAC---CGGTCAGCAAATT-GGCGGT-C-A-CCGTAACG---GGTCACCG---TGCGT---------TC-TCCGTGCG-GT--CAACCAGTGCGATGTGGTAAAGTAGGA-A-CG-TTTCAGGGACTGT
gi|10 : TGGTAAAGTA-GA-A-CG-TTTTAGG
gi|12 : TGGTAAAGTA-GA-A-CGTTTTCAGGGACTatttttcgtgggttgtcagcgttggtcgccgtgcgttac
gi|13 : TGGTAAAGTA-GA-AACG-TTTCAGGGAtttatttccgtgcggtc
gi|14 : TGGTAAAGTA-GA-A-GG-TTTCAGGGACTGatttttcgtagcggt
gi|15 : TGGTAAAGTA-GA-A-CA-TTTCAGGGACtttttcc
gi|16 : cTGGTAAAGTA-GA-A-CG-TTTCGGGGACTGTtttttcc
gi|17 : TGGTAAAGTA-GA-A-CG-TTTCAGGGATTGttttt
gi|2 : ACA-AACTGA-TT--TGTGGTTGA--ACGGGGT-A--CATC----GT---CC---TGTTTGTTTGTGAA--TG-CATA--ATTTTT---AGGGGTGTTT------GTTAAT-TAGCAG-GATATACATATGC--A-ATTCCTCGTG-----------TCCGAAA-AT-GTTG-------AAGCC--A-G-----A-TA-G-TACGC-A---CC-TGGTTATA-GGG-TGTA---------AT--AAAAAAAAACCGCCTAACTATTATA-AGTTTTTTTCATTTTT-TTGC-ACAT-ACT-GTGTCATTT-AGAAAAAAA--AATATATC-ATGAGAAAATAC--GTTGTA-CG-GT-TGTATATACA------------TTTGGCAGAAAGATATCATATACAGTATG-TCAATA-GAT-TG-ATATTTTTGTCCGATACAAC--CATGC-AGTAT-ATAGTTAGATTTTGTTTTATCATTTAT--TTTATTGA-TTGA---TGTAATGTTTAGTGTTGTCTTAACC----TCTATTAGTAAAGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGT-ATGAATTAATTAAT-ATTGCGG---TCAG---GTGGTC-A--CGGT---CA-CGATTGGGCGGTCCG----G-TG-CG-GTT-TAACG-GCGGTCAC---AGGTCACCATA-T-AGCGGT-CAA-CC--AGTGAACGGTCACCG---TGCGTAGCGGTCGGTC-ACGGTGCG-GTCCCAA-CAGTGCG-TGTGGTAAAGTA-GAGA-CG-TTTCAGGGACTGTttttt
gi|3 : GGTC-GGT-CAC-GTGCGGTC-AGCGGT-CAGGC-TTTTTTT-CTTTGCATTGACATTCGGA--ACT--CCAAAG---AGAAAGTGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTT-AGGGGTGTT-GTTAATTGCAGGTTATATGTAT-----TCCTTGTG-CT--CGTAAATCC-TGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAATTG--CTAATA-AAA--A-T-ACTGTG-TTGACAAGGGG--TA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATA----TGT--A--TTCCTCGTG------------CCCTAATAT-TTTG-------AAGCC--ATG--CATG-TA-C-CCCGT-AAT-CC-TGGATGT---CG-T-TACAG-T-GCT-T--AAAAAAAA-------------TATATAGTTTTTTTTTCTTTT-TTGC-ACATAACT-GTA-CATTTCAG-AAAAAAATAATCTCAC-ATGAGAAAATACTTTTTGTATCG-TTATACATATACATTTAGAACATACTTT-ACAGAAA-ATA-CATGTACAGTATGCT-TATA-GA-CTGCTCATTTC---A--ATACAAT-ACATGTAAGTATCAT-GT--GG-TTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTATATTTTTT--T-TTTTCTT-ACCTATATATATTA-TAAT-TATa
gi|4 : AGCCCTACATGTACAATCTGTATACCTGAAGATGTCTACCGATTTTACA--TGACTTAATACAAC--CCTTAATGTG-TTGACAAGGGGATCACCCACCAACAGCAAACCGATCGTTTGTTT---AACTTGTCATATAATTCTTTGGAAGGATGCCTATATAAGTTAATGT-GCGGAG-TAT-C---TGTCAA-GTCTCACGTGGGCGCTGCTGTTCACTAA-ATATTTAATGTTGTAAGCCCAATGAACATGATACGTCCCGTGAATCCC-TGGATGTCAACGTTGTACAG-TGGCTA
gi|5 : TGGTAAAGTA-GA-A-CG-TTTCAGGGACT
gi|5 : GTG--CGTTCGCCA---TGCAT---------TC-ACCGTGAA-TT--CAGCCAtttttccgtgcgttcgccatgcattcaccgtgaattcagccattttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|5 : agtccctgaaacgttctactttaccatttttccGCATTCACCGTGAATTC-AGCCATTTTCCATTCATT--GT--T-CA----G-CG-TGCG-TTCATCGTGCGTTCAC---CGTTAACTAAATT--GCGTT-C-A-GCGT---G--CGGTCAACG---TTCCC---------TC-TGCATACG-GT--CA-CC-GTGTG-TGTGGTAAAGTA-GA-A-TC-TTTCAGGGACTGTttttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|6 : agtccctgaaacgttctactttaccatttttccgtgcgttcgccatGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|6 : GCGGTC-A-CCGGT---CA--CATTTTGCGGT-C-----------------CAGCGTGCGGTCAC---CGTTCGC--AGTCAAGCGGT-T-ATCCGTTGCGTCCAGTCG--G---T-CG----------TC-ACCGTGCG-GT--aaaacaatttttccggcggtcaccggtcacattttgcggtccagcgtgcggtcaccgttcgcagtcaagcggttatccgttgcgtccagtcggtcgtcaccgtgcggt
gi|7 : acagtccctgaaacgttctactttacaaaacaatttttccg-TG-A-T-CAGCGTGCGTTCACTTTCGTTCTCCAA--T--GCGTTTC-A-CC-TA--------TCACCTAATTGCGT---------TCAGGCGTGCGCGT--CA
gi|8 : ctattctttcaatcatGGTCCG-TACA--GTGCGGTC-AGCCTTGCAA-TGTTTCTTT-CTTCGCATTGCCATTCGGA--ACT---CCAAGGAAAAAGATCGT---TACATGT--A
gi|9 : TCCAT---GCGGT-CACCATG-CG-T----T-CTGAGTGCGGTCAC---CGTTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CAGTCCTGAAACGGTCTACGTTTACATTTTTCCGTGCGTCACCGGTCAC
Alignments
lowQualScore : 222222222 1 1 111 1 11 222 22 11 11 1 1 1 1 222 22222 1 11 1 1 11 44444444 1 11 1 22222222 1 111111 222222222 111 111 11 1 11 111 222222 111 1 1 22222 22222 555555555555 1 1 3333333 11 222 1 111 1 1 333 1 1111111111 66666666666 1 1 1 1 1 1 1 1 22 1 1111 3333333 11 1 1 1 1 11 5555555 22 1 1 11 22 1 222 2222 1 222 2 11 1 11 11 1 1 1 11 11 22222 11 111 111 22 222 444444444444444444 111 22222 333333333 111 2222222222 1
lowQualScore : 222222222 3 44 2 444 3 0 7 88 555 6 00 0 88 77 5 5 5 5 111 77777 5 88 1 5 3 88 11111111 2 88 0 44444444 0 2 444444 333333333 666 777 33 0 66 777 888888 111 0 0 77777 11111 444444444444 0 0 2222222 33 3 666 0 666 0 999 0 000 0 2 2 9999999999 22222222222 3 3 3 3 3 3 2 7 7 1 3 6 7 00 3 6666 2222222 33 7 3 3 6 2 3 44 6 4444444 7 00 3 6 3 88 7 00 3 444 2222 3 555 7 6 6 00 5 1 1 1 1 77 1 88 5 5 1 5 88 66 1 22222 00 6 0 666 777 33 222 8 000000000000000000 111 3 55555 999 8 555555555 33 111 2 8888888888 77 6 99 99 3 3 3 3 3 3
lowQualScore : ......... . .. . ... . . . .. ... . .. . .. .. . . . . ... ..... . .. . . . .. ........ . .. . ........ . . ...... ......... ... ... .. . .. ... ...... ... . . ..... ..... ............ . . ....... .. . ... . ... . ... . ... . . . .......... ........... . . . . . . . . . . . . . .. . .... ....... .. . . . . . . .. . ....... . .. . . . .. . .. . ... .... . ... . . . .. . . . . . .. . .. . . . . .. .. . ..... .. . . ... ... .. ... . .................. ... . ..... ... . ......... .. ... . .......... .. . .. .. . . . . . .
lowQualScore : 000000000 3 77 0 000 3 7 3 33 000 7 00 7 33 55 0 0 5 5 555 00000 0 00 0 0 3 33 77777777 0 33 0 55555555 0 5 888888 555555555 222 555 88 0 55 555 888888 000 0 0 22222 22222 555555555555 0 0 5555555 88 2 222 0 222 0 000 0 222 0 5 5 1111111111 00000000000 3 3 3 3 3 3 0 3 3 0 3 7 3 77 3 7777 3333333 00 3 3 3 7 0 3 00 7 3333333 3 77 3 7 3 33 3 77 3 333 7777 3 777 3 7 7 33 5 0 0 0 0 55 0 00 5 0 0 5 55 55 0 55555 33 7 2 000 555 66 888 0 777777777777777777 777 2 00000 222 0 666666666 22 777 5 3333333333 77 7 22 55 2 3 3 3 3 3
consensus : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATT-AGCGGT-C-A-CCGTAGCG--CGGTCGCCG---TGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
Reference ( family-23 ) : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATT-AGCGGT-C-A-CCGTAGCG--CGGTCGCCG---TGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|1 : CAGTCGGTC-G-T-CACCGTGCGGTCCAGCAATACAGGTGCTTTTTCACTTTGCAT-GACATTCGGGGTACTAACTCAAAGAAAGAAAGCGT-GCTACGTGTCCACCCATTTACAGATGCTGCC-GTGTTT-TTTAATGCATCTTTTTAAGGGTGTTTGTTAATTGCAGGT---ATATATGTATTTCCTTGTGGCTTGCGGAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-CTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAA-T-GCAG-G-TATAT---TGT--ATGTTCCTCGTG-----------CCCCTAA-AT-TTTG-------AAGCC--ATGC-CATG-TA-G-CCCGT-AATCCCTTGGATGT--GCG-TGTACAGTT-GCTATAAAAAAAAAAA------AA--ATTAAG-GGTTTTTTTTTCTTTTGTTGCGACAT-ACTGGTG-CATGTTAGAAAAAAAATAATCTCCCTAT-AG-AAATAC-TTGTCAA-CGTTT-TGTATATACATT---AGCATACTTTACCAG-AA-ATA-CATGTACAGTATGCTTTATACGATCTGCATATTT---TC--AT--AACAACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTATGATCCATTGAGTTGAA-ATGTATTGTTT--T-TTTTCTT-ACC--TATA-ATTATTAATGTA--TGG-TACAAGTAATTTATTTAATTTATTTTTTAGGCTAATGGA-ATAGAATATATCTAACCC-AGTGGAAAAAAATTCCGAAACATTCCGGAATGATTTAAT--GTCATTGTGGCGTTCAGCGTGCGGTCAAGCCGGT---CA--CATT--GCGGT-CA----GTCGCTG-G-T--AGCGTGCGGTCAC---CGGTCAGCAAATT-GGCGGT-C-A-CCGTAACG---GGTCACCG---TGCGT---------TC-TCCGTGCG-GT--CAACCAGTGCGATGTGGTAAAGTAGGA-A-CG-TTTCAGGGACTGT
gi|10 : TGGTAAAGTA-GA-A-CG-TTTTAGG
gi|12 : TGGTAAAGTA-GA-A-CGTTTTCAGGGACTatttttcgtgggttgtcagcgttggtcgccgtgcgttac
gi|13 : TGGTAAAGTA-GA-AACG-TTTCAGGGAtttatttccgtgcggtc
gi|14 : TGGTAAAGTA-GA-A-GG-TTTCAGGGACTGatttttcgtagcggt
gi|15 : TGGTAAAGTA-GA-A-CA-TTTCAGGGACtttttcc
gi|16 : cTGGTAAAGTA-GA-A-CG-TTTCGGGGACTGTtttttcc
gi|17 : TGGTAAAGTA-GA-A-CG-TTTCAGGGATTGttttt
gi|2 : ACA-AACTGA-TT--TGTGGTTGA--ACGGGGT-A--CATC----GT---CC---TGTTTGTTTGTGAA--TG-CATA--ATTTTT---AGGGGTGTTT------GTTAAT-TAGCAG-GATATACATATGC--A-ATTCCTCGTG-----------TCCGAAA-AT-GTTG-------AAGCC--A-G-----A-TA-G-TACGC-A---CC-TGGTTATA-GGG-TGTA---------AT--AAAAAAAAACCGCCTAACTATTATA-AGTTTTTTTCATTTTT-TTGC-ACAT-ACT-GTGTCATTT-AGAAAAAAA--AATATATC-ATGAGAAAATAC--GTTGTA-CG-GT-TGTATATACA------------TTTGGCAGAAAGATATCATATACAGTATG-TCAATA-GAT-TG-ATATTTTTGTCCGATACAAC--CATGC-AGTAT-ATAGTTAGATTTTGTTTTATCATTTAT--TTTATTGA-TTGA---TGTAATGTTTAGTGTTGTCTTAACC----TCTATTAGTAAAGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGT-ATGAATTAATTAAT-ATTGCGG---TCAG---GTGGTC-A--CGGT---CA-CGATTGGGCGGTCCG----G-TG-CG-GTT-TAACG-GCGGTCAC---AGGTCACCATA-T-AGCGGT-CAA-CC--AGTGAACGGTCACCG---TGCGTAGCGGTCGGTC-ACGGTGCG-GTCCCAA-CAGTGCG-TGTGGTAAAGTA-GAGA-CG-TTTCAGGGACTGTttttt
gi|3 : GGTC-GGT-CAC-GTGCGGTC-AGCGGT-CAGGC-TTTTTTT-CTTTGCATTGACATTCGGA--ACT--CCAAAG---AGAAAGTGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTT-AGGGGTGTT-GTTAATTGCAGGTTATATGTAT-----TCCTTGTG-CT--CGTAAATCC-TGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAATTG--CTAATA-AAA--A-T-ACTGTG-TTGACAAGGGG--TA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATA----TGT--A--TTCCTCGTG------------CCCTAATAT-TTTG-------AAGCC--ATG--CATG-TA-C-CCCGT-AAT-CC-TGGATGT---CG-T-TACAG-T-GCT-T--AAAAAAAA-------------TATATAGTTTTTTTTTCTTTT-TTGC-ACATAACT-GTA-CATTTCAG-AAAAAAATAATCTCAC-ATGAGAAAATACTTTTTGTATCG-TTATACATATACATTTAGAACATACTTT-ACAGAAA-ATA-CATGTACAGTATGCT-TATA-GA-CTGCTCATTTC---A--ATACAAT-ACATGTAAGTATCAT-GT--GG-TTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTATATTTTTT--T-TTTTCTT-ACCTATATATATTA-TAAT-TATa
gi|4 : AGCCCTACATGTACAATCTGTATACCTGAAGATGTCTACCGATTTTACA--TGACTTAATACAAC--CCTTAATGTG-TTGACAAGGGGATCACCCACCAACAGCAAACCGATCGTTTGTTT---AACTTGTCATATAATTCTTTGGAAGGATGCCTATATAAGTTAATGT-GCGGAG-TAT-C---TGTCAA-GTCTCACGTGGGCGCTGCTGTTCACTAA-ATATTTAATGTTGTAAGCCCAATGAACATGATACGTCCCGTGAATCCC-TGGATGTCAACGTTGTACAG-TGGCTA
gi|5 : TGGTAAAGTA-GA-A-CG-TTTCAGGGACT
gi|5 : GTG--CGTTCGCCA---TGCAT---------TC-ACCGTGAA-TT--CAGCCAtttttccgtgcgttcgccatgcattcaccgtgaattcagccattttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|5 : agtccctgaaacgttctactttaccatttttccGCATTCACCGTGAATTC-AGCCATTTTCCATTCATT--GT--T-CA----G-CG-TGCG-TTCATCGTGCGTTCAC---CGTTAACTAAATT--GCGTT-C-A-GCGT---G--CGGTCAACG---TTCCC---------TC-TGCATACG-GT--CA-CC-GTGTG-TGTGGTAAAGTA-GA-A-TC-TTTCAGGGACTGTttttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|6 : agtccctgaaacgttctactttaccatttttccgtgcgttcgccatGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|6 : GCGGTC-A-CCGGT---CA--CATTTTGCGGT-C-----------------CAGCGTGCGGTCAC---CGTTCGC--AGTCAAGCGGT-T-ATCCGTTGCGTCCAGTCG--G---T-CG----------TC-ACCGTGCG-GT--aaaacaatttttccggcggtcaccggtcacattttgcggtccagcgtgcggtcaccgttcgcagtcaagcggttatccgttgcgtccagtcggtcgtcaccgtgcggt
gi|7 : acagtccctgaaacgttctactttacaaaacaatttttccg-TG-A-T-CAGCGTGCGTTCACTTTCGTTCTCCAA--T--GCGTTTC-A-CC-TA--------TCACCTAATTGCGT---------TCAGGCGTGCGCGT--CA
gi|8 : ctattctttcaatcatGGTCCG-TACA--GTGCGGTC-AGCCTTGCAA-TGTTTCTTT-CTTCGCATTGCCATTCGGA--ACT---CCAAGGAAAAAGATCGT---TACATGT--A
gi|9 : TCCAT---GCGGT-CACCATG-CG-T----T-CTGAGTGCGGTCAC---CGTTCA
blockSeqs : GGTCAC . GG G GC . T . C G AG . . C G . . TAT . . . T . T AA TACCGATT A AC C CCTTAA G C ATCACC AACAGCAAA GAT GTG CT T TA TGG ATATAA TA A A ACATA CAAG GGCGCTGCTGTT T A ATGTTGT CA T AAC A CGT G ATC . CAA T G C TGCTT ACCGCCTAACT T . . A . T C A A T . G A TT T TTA TTTAGAA GG A G T C C . T C TTGTCCG A A A C A TA T A . ATG AGTG A TAT T G G TT T T A T T . C . T . T A . T A TAAT CA C AG TTC TT TGG C AGCGTGCGTTC TTT C GTCAA CA T GTTGCGTCC AC AAT G TAGCGGTCGG AG C CC GC A . . G A T
blockSeqs : CGTACA . CT . TG . T . . . . . . . G . . . TGATT . C GTA GT G . . . G . . GT . . A AA T . . . . T C . G . AT . AG . G C AT . . . . . . . . . . A . G A . . GT . A A . . . . . C . CA A . . . . . . . . . T . . T . . . . A . TC TTT . ACCATGCGTTC . T ATA TC . AGTGAAC GC . G T A . . A A . . . . .
blockSeqs : . ATAC . . TA GT . . . . . . . T . . C A . . . . . . . . C . . . . . . . A . C T . GGTGCGGTTT . C ATT C . GTGC AA . T C A . . C . . . . .
blockSeqs : . . . C . . T T . TA AC . G T T . . . . . .
blockSeqs : . G . . . A . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : C* T** GCGCGGTTC********* GTN** GTGC*****
originalCons : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CATCCATT--GCGGT-CA----G-CG-TG-G-T-CAGCGTGCGGTCAC---CGTTCACCAAATT-AGCGGT-C-A-CCGTAGCG--CGGTCGCCG---TGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
finalCons : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGT---CAC-CATT--GCGGT-CGCGCGGTTC---------AGCGTGCGGTCAC---CGTTCACCAAGTN--GCGGT-C-A-CCGTGC-----GGTCGCCG---TGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CAGTCCTGAAACGGTCTACGTTTACATTTTTCCGTGCGTCACCGGTCAC
Alignments
lowQualScore : 222222222 1 1 111 1 11 222 22 11 11 1 1 1 1 222 22222 1 11 1 1 11 44444444 1 11 1 22222222 1 111111 222222222 111 111 11 1 11 111 222222 111 1 1 22222 22222 555555555555 1 1 3333333 11 222 1 111 1 1 333 1 1111111111 66666666666 1 1 1 1 1 1 1 1 22 1 1111 3333333 11 1 1 1 1 11 5555555 22 1 1 11 22 1 222 2222 1 222 2 11 1 11 11 1 1 1 11 11 22222 11 111 1 7777777777777777 1 1 111 222222 111111111111111 111 2222222222 1
lowQualScore : 222222222 3 44 2 444 3 0 7 88 555 6 00 0 88 77 5 5 5 5 111 77777 5 88 1 5 3 88 11111111 2 88 0 44444444 0 2 444444 333333333 666 777 33 0 66 777 888888 111 0 0 77777 11111 444444444444 0 0 2222222 33 3 666 0 666 0 999 0 000 0 2 2 9999999999 22222222222 3 3 3 3 3 3 2 7 7 1 3 6 7 00 3 6666 2222222 33 7 3 3 6 2 3 44 6 4444444 7 00 3 6 3 88 7 00 3 444 2222 3 555 7 6 6 00 5 1 1 1 1 77 1 88 5 5 1 5 88 66 1 22222 00 6 0 666 5 2222222222222222 0 0 3 0 444 0 3 555555 8 8 5 999999999999999 22 000 0 3333333333 777 5 77 2 3 3 3 3 3 3
lowQualScore : ......... . .. . ... . . . .. ... . .. . .. .. . . . . ... ..... . .. . . . .. ........ . .. . ........ . . ...... ......... ... ... .. . .. ... ...... ... . . ..... ..... ............ . . ....... .. . ... . ... . ... . ... . . . .......... ........... . . . . . . . . . . . . . .. . .... ....... .. . . . . . . .. . ....... . .. . . . .. . .. . ... .... . ... . . . .. . . . . . .. . .. . . . . .. .. . ..... .. . . ... . ................ . . . . ... . . ...... . . . ............... .. ... . .......... ... . .. . . . . . . .
lowQualScore : 000000000 3 77 0 000 3 7 3 33 000 7 00 7 33 55 0 0 5 5 555 00000 0 00 0 0 3 33 77777777 0 33 0 55555555 0 5 888888 555555555 222 555 88 0 55 555 888888 000 0 0 22222 22222 555555555555 0 0 5555555 88 2 222 0 222 0 000 0 222 0 5 5 1111111111 00000000000 3 3 3 3 3 3 0 3 3 0 3 7 3 77 3 7777 3333333 00 3 3 3 7 0 3 00 7 3333333 3 77 3 7 3 33 3 77 3 333 7777 3 777 3 7 7 33 5 0 0 0 0 55 0 00 5 0 0 5 55 55 0 55555 33 7 2 000 0 5555555555555555 0 0 8 8 000 6 2 444444 0 0 7 999999999999999 11 000 7 0000000000 444 7 99 5 2 3 3 3 3 3
consensus : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGTCACCATT--GC---GGTC--G--CGC-G-GTTCAGCGTGCGGTCAC---CGTTCACCAAA-T--NGCG-GTC-A-CC-G-T-G--C-G----GTCGCC---GTGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
Reference ( family-23 ) : CAGTCGGTC-G-T-CAC-GTGCGGTC-AGCGNTGCAGGCGTTTTTTT-CTTCGCATTGACATTCGGA--ACT--CCCAAGGAAAGAAAGCGT-GCTACGTGT--ACCCATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTTTAGGGGTGTTTGTTAATTGCAGGTTATATGTATGTATTTCCTTGTGGCTTGCGNAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-TTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATAC---TGT--A-GTTCCTCGTG-----------TCCCTAA-AT-TTTG-------AAGCC--ATG--CATG-TA-G-CCCGT-AATCCC-TGGATGT--GCG-TGTACAG-T-GCTAT--AAAAAAAAA------AA--ATTATA-AGTTTTTTTTTCTTTT-TTGC-ACAT-ACT-GTG-CATTTCAGAAAAAAAATAATCTCNC-ATGAGAAAATAC-TTTTGTA-CG-TT-TGTATATACATT---AGCATACTTTGNCAGAAA-ATA-CATGTACAGTATGCTCTATA-GATCTGCATATTTC--TC--ATACAAC-ACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTAT-ATCCATTGA-TTGAA-GTGTATTGTTT--T-TTTTCTT-ACC--TATATATTA-TAATGTATTTGGTTACAANTAATTTANTTNATTTNTTTTTTAGGCTNATGGATATAGAATATNTCCAACCCAAGTGGGAAAAAATTCCGAAACATTCCGNAATGANTTAATTAGTCATTGCGGCGTTCAGCGTGCGGTC-AGCCGGTCACCATT--GC---GGTC--G--CGC-G-GTTCAGCGTGCGGTCAC---CGTTCACCAAG-T--NGCG-GTC-A-CC-G-T-G--C-G----GTCGCC---GTGCGT---------TC-NCCGTGCG-GT--CAACCAGTGCG-TGTGGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|1 : CAGTCGGTC-G-T-CACCGTGCGGTCCAGCAATACAGGTGCTTTTTCACTTTGCAT-GACATTCGGGGTACTAACTCAAAGAAAGAAAGCGT-GCTACGTGTCCACCCATTTACAGATGCTGCC-GTGTTT-TTTAATGCATCTTTTTAAGGGTGTTTGTTAATTGCAGGT---ATATATGTATTTCCTTGTGGCTTGCGGAAATCCCTGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAGTTG--CTAATA-AAC--A-CTACTGTG-TTGACAAGGGGGTCA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAA-T-GCAG-G-TATAT---TGT--ATGTTCCTCGTG-----------CCCCTAA-AT-TTTG-------AAGCC--ATGC-CATG-TA-G-CCCGT-AATCCCTTGGATGT--GCG-TGTACAGTT-GCTATAAAAAAAAAAA------AA--ATTAAG-GGTTTTTTTTTCTTTTGTTGCGACAT-ACTGGTG-CATGTTAGAAAAAAAATAATCTCCCTAT-AG-AAATAC-TTGTCAA-CGTTT-TGTATATACATT---AGCATACTTTACCAG-AA-ATA-CATGTACAGTATGCTTTATACGATCTGCATATTT---TC--AT--AACAACATGT-AGTATCAT-GT--GGTTTTGTTTTATCATTTATGATCCATTGAGTTGAA-ATGTATTGTTT--T-TTTTCTT-ACC--TATA-ATTATTAATGTA--TGG-TACAAGTAATTTATTTAATTTATTTTTTAGGCTAATGGA-ATAGAATATATCTAACCC-AGTGGAAAAAAATTCCGAAACATTCCGGAATGATTTAAT--GTCATTGTGGCGTTCAGCGTGCGGTCAAGCCGGTCA-CATT--GC---GGTC--AGTCGCTG-GT--AGCGTGCGGTCAC---CGGTCAGCAAATT--GGCG-GTC-A-CC-G-TAA--CGG----GTCACC---GTGCGT---------TC-TCCGTGCG-GT--CAACCAGTGCGATGTGGTAAAGTAGGA-A-CG-TTTCAGGGACTGT
gi|10 : TGGTAAAGTA-GA-A-CG-TTTTAGG
gi|12 : TGGTAAAGTA-GA-A-CGTTTTCAGGGACTatttttcgtgggttgtcagcgttggtcgccgtgcgttac
gi|13 : TGGTAAAGTA-GA-AACG-TTTCAGGGAtttatttccgtgcggtc
gi|14 : TGGTAAAGTA-GA-A-GG-TTTCAGGGACTGatttttcgtagcggt
gi|15 : TGGTAAAGTA-GA-A-CA-TTTCAGGGACtttttcc
gi|16 : cTGGTAAAGTA-GA-A-CG-TTTCGGGGACTGTtttttcc
gi|17 : TGGTAAAGTA-GA-A-CG-TTTCAGGGATTGttttt
gi|2 : ACA-AACTGA-TT--TGTGGTTGA--ACGGGGT-A--CATC----GT---CC---TGTTTGTTTGTGAA--TG-CATA--ATTTTT---AGGGGTGTTT------GTTAAT-TAGCAG-GATATACATATGC--A-ATTCCTCGTG-----------TCCGAAA-AT-GTTG-------AAGCC--A-G-----A-TA-G-TACGC-A---CC-TGGTTATA-GGG-TGTA---------AT--AAAAAAAAACCGCCTAACTATTATA-AGTTTTTTTCATTTTT-TTGC-ACAT-ACT-GTGTCATTT-AGAAAAAAA--AATATATC-ATGAGAAAATAC--GTTGTA-CG-GT-TGTATATACA------------TTTGGCAGAAAGATATCATATACAGTATG-TCAATA-GAT-TG-ATATTTTTGTCCGATACAAC--CATGC-AGTAT-ATAGTTAGATTTTGTTTTATCATTTAT--TTTATTGA-TTGA---TGTAATGTTTAGTGTTGTCTTAACC----TCTATTAGTAAAGTATTTGATTACAATTAATTTAATTTATTTTTTTTTTA--CTCA--GATATA-AATATTTCCAACCCAAGTGGGAAAAA--TTCGAAACATTCCGT-ATGAATTAATTAAT-ATTGCGG---TCAG---GTGGTC-A--CGGTCACGATTGGGC---GGTCCGG--TGC-G-GTTTAACG-GCGGTCAC---AGGTCACCATA-T--AGCG-GTCAA-CCAG-T-GAAC-G----GTCACC---GTGCGTAGCGGTCGGTC-ACGGTGCG-GTCCCAA-CAGTGCG-TGTGGTAAAGTA-GAGA-CG-TTTCAGGGACTGTttttt
gi|3 : GGTC-GGT-CAC-GTGCGGTC-AGCGGT-CAGGC-TTTTTTT-CTTTGCATTGACATTCGGA--ACT--CCAAAG---AGAAAGTGTAGCTACATGT--AC--ATTTACAGATGCTGCCCGTGTTTGTTTAATGCATCTTTT-AGGGGTGTT-GTTAATTGCAGGTTATATGTAT-----TCCTTGTG-CT--CGTAAATCC-TGAAGCCATACATGTACACTC-GTAATCCTG--GATGTC----G---TTACAATTG--CTAATA-AAA--A-T-ACTGTG-TTGACAAGGGG--TA--CACC----GT---CCG--TGTTTGTTT---AA--TG-CATA-GATTTTT---AGGGGTGTTT------GTTAAT-T-GCAG-G-TATA----TGT--A--TTCCTCGTG------------CCCTAATAT-TTTG-------AAGCC--ATG--CATG-TA-C-CCCGT-AAT-CC-TGGATGT---CG-T-TACAG-T-GCT-T--AAAAAAAA-------------TATATAGTTTTTTTTTCTTTT-TTGC-ACATAACT-GTA-CATTTCAG-AAAAAAATAATCTCAC-ATGAGAAAATACTTTTTGTATCG-TTATACATATACATTTAGAACATACTTT-ACAGAAA-ATA-CATGTACAGTATGCT-TATA-GA-CTGCTCATTTC---A--ATACAAT-ACATGTAAGTATCAT-GT--GG-TTTGTTTTATCATTTAT-ATCCATTGA-TTGAATGTATATTTTTT--T-TTTTCTT-ACCTATATATATTA-TAAT-TATa
gi|4 : AGCCCTACATGTACAATCTGTATACCTGAAGATGTCTACCGATTTTACA--TGACTTAATACAAC--CCTTAATGTG-TTGACAAGGGGATCACCCACCAACAGCAAACCGATCGTTTGTTT---AACTTGTCATATAATTCTTTGGAAGGATGCCTATATAAGTTAATGT-GCGGAG-TAT-C---TGTCAA-GTCTCACGTGGGCGCTGCTGTTCACTAA-ATATTTAATGTTGTAAGCCCAATGAACATGATACGTCCCGTGAATCCC-TGGATGTCAACGTTGTACAG-TGGCTA
gi|5 : TGGTAAAGTA-GA-A-CG-TTTCAGGGACT
gi|5 : -CC-G-T-G--C-G----TTCGCC---ATGCAT---------TC-ACCGTGAA-TT--CAGCCAtttttccgtgcgttcgccatgcattcaccgtgaattcagccattttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|5 : agtccctgaaacgttctactttaccatttttGCATTCACCGTGAATTC-AGCCATTTTCCATT---CATTGTTCA-G--CGT-GCGTTCATCGTGCGTTCAC---CGTTAACTAAA-T--TGCG-TTC-A-GC-G-T-G--C-G----GTCAAC---GTTCCC---------TC-TGCATACG-GT--C-ACC-GTGTG-TGTGGTAAAGTA-GA-A-TC-TTTCAGGGACTGTttttccattcattgttcagcgtgcgttcatcgtgcgttcaccgttaactaaattgcgttcagcgtgcggtcaacgttccctctgcatacggtcaccgtgtgtgtggtaaagtagaatctttcagggactgt
gi|6 : agtccctgaaacgttctactttaccatttttccgtgcgttcgccatGTAAAGTA-GA-A-CG-TTTCAGGGACTGT
gi|6 : GCGGTC-A-CCGGTCA-CATT---------T------TGC-G-GTCCAGCGTGCGGTCAC---CGTTCGC--AG-TCAAGCG-GTT-ATCC-GTT-G--C-GTCCAGTCG-----GT-CG----------TC-ACCGTGCG-GT--aaaacaatttttccggcggtcaccggtcacattttgcggtccagcgtgcggtcaccgttcgcagtcaagcggttatccgttgcgtccagtcggtcgtcaccgtgcggt
gi|7 : acagtccctgaaacgttctactttacaaaacaatttttccgTCAGCGTGCGTTCACTTTCGTTCTCCAA-----TGCGTTTC-A-CC---T-----------ATCACCTAATTGCGT---------TCAGGCGTGCGCGT--CA
gi|8 : ctattctttcaatcattgaGGTCCG-TACA--GTGCGGTC-AGCCTTGCAA-TGTTTCTTT-CTTCGCATTGCCATTCGGA--ACT---CCAAGGAAAAAGATCGT---TACATGT--A
gi|9 : -CC-A-T-G--C-G----GTCACC---ATGCGT---------TC-TGAGTGCG-GT--CA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CAGTCCTGAAACGGTCTACGTTTACATTTTTCCGTGCGTCACCGGTCAC