lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111 1111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 2222222 444444444444 22222 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333 111 111111 111 3333 000000000000000000000000 2 1111 222222 111111 0000000000000000000000000000000000000000000000000000000 1 55555555555555555 111 11 22 22222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 11 2222 5555555 1 333333333 55555555555 11 111 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 88 777 1 77 6666666 333333333333 4 5 44444 8 8 000 1 3 7777 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 4444444444 8 333 666666 5 555 1111 777777777777777777777777 1 0 3333 8 000000 0 444444 0 0 5555555555555555555555555555555555555555555555555555555 4 3 99999999999999999 8 777 3 33 00 77777777 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 88 4 3333 0 5555555 3 333333333 55555555555 66 3 666 33 2 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : .. ... . .. ....... ............ . . ..... . . ... . . .... ............................................................................................................................ . .......... . ... ...... . ... .... ........................ . . .... . ...... . ...... . . ....................................................... . . ................. . ... . .. .. ........ ..................................................................................... . .. . .... . ....... . ......... ........... .. . ... .. . ...............................................................................................................................
lowQualScore : 22 111 7 99 2222222 888888888888 0 7 66666 0 0 000 4 8 0000 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 5555555555 0 333 000000 7 777 3333 888888888888888888888888 0 8 7777 3 444444 6 777777 2 2 6666666666666666666666666666666666666666666666666666666 7 3 77777777777777777 3 555 2 88 55 00000000 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 33 7 0000 7 0000000 3 333333333 00000000000 00 2 555 88 5 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
consensus : CATAGGCGTAGGACTGTCTTTTGAAGAGGGGAGG--GG-GGG--GCAAACTT----C-TAA-GTAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AATG--TGT--GTGTG-GTGGGGGG--------GGGGGANA----ACTTAT----A-AATAAC-GCGAC-------------A---------AGAAAGGCAA-----TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG---TGTCATGATGCAGAAAAAAAGTTACTTGACAA---G-GGGGGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTCCCCCCCCCG--C--TG-C----T-ACACCCATG----ATTNCC---AATACGG-----------CCAGCACG-TTCAGT-CA-----A---CATT-ACCATAG---TTCAAGGACA--GACAT-TGCGTAAG-ATTTG--CGG-----CTT------------ACAAANNNCGGGC--C------TCTTTCCACC--ACG-TTC---G-GT-------TATA------TGT-AGC--ATTTNCCAC--GNAACTTTTC--CC---GA-TTTTT--GAT--TAACGAA-A-TAT-ATT-GTTTACG-AAGGAGTTGTC-NGCGA--CTGATCANA-CTCTCCATACG--TCATTCGTCAA-TG-TACTGCGCCCT-----A-GA-----------TT---CAGACNANTTTGTTATCATATTCTGATTGNATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
Reference ( gi|2 ) : CATAGGCGTAGGACTGTCCTTTGAAGAGGGGAGG--GG-GGA--GCAAACTT----C-TGC-GTAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTA----------AATG--TGT--GTGTGCGTGGGGGG--------GGGGGGGG----ACTTAT----A-AATACCCGCGAC-------------A---------AGAAA----A-----TAA--AGAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG---TGTC-TAATGCAGAAAAAAAGTTACTTGACAAGGGGGGGGGGGGGGGGGCTAAAACAT-A--CTATTG-ACTT-TCAATCCCTCCCCCCCCCCCCG--C--T--C----T-ACACCC-TG----ATTCCC--CAATACGG-----------CCAGCATG-TTCAGT-CA-----A---CATT-ACCAAAG---TTCAAGGACA--GACAT-AGCGTAAG-ATTTG--CGG-----CTT------------ACA-------------------TCTTTCCAC---ACGTTTC---G-GT-------TATA------TGT-AGC--ATTTTCCAC--AGAACTTTCC--C----GA-TTTTT--GAT--TGACGAAGAATAT-ATT-GTTTACA-AAGGAGTTGTC-TGCGA--CTGATCAGATTTCTCCATACATCCCATTCGT----TG-TACTGTGCCTT-----ACGA-----------TT---CA-ACACGTTTGT--TCATATTCTGATTA------ACTTTCT-----A----TTC--AG-TCATAGG
gi|12 : CATAGGCGTAGAACTGTCTTT--AAATGGGGAGG--GGTGGG--GCAAACAT----C-TAA-AAATTGTG-ACAAGCAAAA--
gi|3 : ccccaaaaaaaccaaaATAGGCGTAGGGATGTC-TTTGAAGAAGGGAGATAGG-GGAAGGCAAACTT----C-TAAAGTAGTGCGCACATGCAAAAA-TCA-AAAAAAGC-T-TATGGAA----CACTA----------AATGA-TGT--GTGTGTGTGTGGTGACGCGCCAGGCGGAGA----ACTTATA---A-AATA-ATGCGACAAAAACCAAATTTA---------AGAAG----AGTAATTAG--AAAACTGA--A-------GG-GGA---TTCTAAAT-----TACTGT--TGCCATGATGCAGAA------------GCCA----------GGGGGGGGCAAAAACATAA--CTATTGCATTTGTCCATCCCTCCTCTCCTCCCCC--C--C--C----C-CCACaaccccaacaaaaacgtgttaaag
gi|6 : tttaaactaagataaattttaggtgcggaacccggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacggagaataattcaATAGGCGTAGGACTGT-TTTTG-AGAAAGGGGG--GG-GGG--GCAAACTT----C-TA----AATG-G-GCAAGCAAA-----A-AAAAG-GCAC-AATAG-A----CAC-------------ATG--TTT--TT-----TGACGGG--------GAGGGGTG----AC
gi|17 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaTAGGCGTAGCACTGT-CTTTGACAAGGGGGGG--GG-ggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgaaaatacttgacaataagtggggggaggggataaacatgcttttgcccactcccttt
gi|16 : ataattcctAGGCGTAGGACTGT--TTTTAAG-GGGGTGG--GG-G--------ACTT----C-TAA-ATAATGTG-ACAAGC
gi|13 : GTGTAGGACTGTTTTT----GAGGGGAGG--GG----------ACTTAAAAC-TG-----ATGTG-ACAAGC-------CA-AAAAA-GG-T-AATTGAA----CACTA----------ATTG--TGT--GT-----TGGGGGG--------
gi|1 : acTGAAGAGGG-AGG--AA-GGC--CCAA-CTT----CATAA-GGAATGCG-AATAGCAAAAATTCATAGGAA-GC-TTGATGGGAAAATCACTGTATCGCTGTCAATAGTTGTTGATGTG-GTGGGGAG--------GGGAGAGGGGCAACTTATTAAAA-AGTAAT-GCGAC-------------AGAAAATTTAAGAAAGGTAA-----TAAGAAAAACTGAGGA-------GG-GGG-A-TTCTAAAT------A-TG---TGTCATGATGCA-------------------------GGGGGGGGTGGGCAAAAACTT-AACCTATTG-ATTG-TCCATCCCCCCTCCCCCCGGCG--TAATAAC----T-AC-CCA-TGTTAGATTACCAACATCAAGGATTTGATTCTTCTAGCATGGTTCAGT-CACAAGTA---CTGT-ACCATAGAGTTTCAAGGACATGGACATTAGCGTAAGCATATGGGCGGAAATACTT------------ACAAATGTCGGGTAATCCCCGTTCTTTCCACTACACAGTTCTATGTGTATTAATATACA------TGT-GTC--ATTTCCTACTCGCAACTCTTC--CTCCGGA-TTTTTTTGATCATTACGAAGA-TATTATTTGTTTACG-AGGACGTTGTCTTTCGAAGCTGATCAGA--TCCCTAT-----TCATTCGTCAA-TGCTACTGCGCTCT-----A-GATAAAGTAGATTTT---CAGACAACTTTGTTATC-TATTCTGATTGGATTATACCCTCTTTCCAA----TTC--AGTTCATAGG
gi|8 : TAATGCG-ATACG-AATA--T-A-GAAAA-GG-T-AATACAA----CACTG----------AA------------------GAGGG--------GAGGGAAA----ACTTCT----A-AAAATC---------------------------------A----A-----T----AGATGTGG--G-------GGAGGG-GCTTCTAAATTACGGTA-TG---TGTC-g
gi|4 : agcaacttcaaaaaGGGGCA----ACTTAT----ATAATAAT-GCGAC-------------A---------AAAAAGGCAA-----TAA--AACACTGA--ATGGGGGTGG-GGGCGCTTCTCAAT-----TA-TG---TGTCATGATGCAGAAAAAAAGTAACTTGAC--------GGGGGGGAGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCC---------CCTCGGAC--T--C----TTACACTCATG----ATTTCC---AATACAG-----------CCAGCAAG-TTCAGT-GA-----C---AATT-ATCATAA---TTCAAGGACA--TATAT-TGCGTAAG-A-TTG--CGG-----CTT------------ACAAAATACAAACCTCG-----TCTTTTCAC---ACG-TTC---G-GT-------TATA------TGT-AGC--ATTTACCAC--AGAGCTTTTCCAC----GATTTTTT--GAT--TAACGAA-----------GTTAAGG-AAGGAGTTGTC-AGTGA--CTGACCATA-CTCTCCATatga
gi|16 : a-------GG-GGG-ACTTCTAAAT-----AA-TG---TGt
gi|14 : aggcgtaggactgtttttaagggggt-ACTTCTAAAT-----TA-TG---TGACATGTTGCAGA------GTTACTTGACAA---AAAGTGGGGGGAGGCAAAATCAT-A--CTTTTacaagc
gi|10 : aTTTTAAAT-----TA-TGACATGT-----TGAAGACAAAAAATTACTTGACGGAAAGTGGAGGGGGGAGGCAAAAACAT-T--CTTTTG-CCCC-TCAt
gi|6 : AAAA--TACTTGACAATAAGTGGGGGGAGGGGAT--AAACAT-G--CTTTTG-CC----CACTCCCTccccaatttcaaattggcatgaatagtttgttctata
gi|5 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaataggcgtaggactgtttttgagaaagggggggggggcaaacttctaaatgggcaagcaaaaaaaaggcacaatagacacatgttttttgacggggaggggtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgCCCCCCCG--C--GG-CGTAAT-ACACCCATG----ATTCCC---AATATGA-----------CCAGCACG-TTCAGCACA-----ATTACATTTACCAAAG---T-CAAGAACA--GACAT-TGCGTAAG-AT--G--CGG-----CTTTTACCAAAATTAACAATCCCCG------------TCTTTCCACC--ACGCT-C---G----------TATAAATAATTGTCAGCCCATTTTCCAC--GAAACTTTCC--CCG--GA-TTTTT---AT--GAACGAA-AATAT-ATT-GTTTACGCAAGGAG-TGT--TGCGC--CTGAT--------TCCAGACG--CCATTCGTTAACTG-TACTGCGCCCCTCACAACGA-----------CTTCCCA-ACCAGTTTGT--T-ATATTCTGATTAT-----ACCTTTT-----ACAATTTCAAAG-TCATAGGtt
gi|18 : ---TTCAAGGACA--GACAT-TGCGTAAG-A-TTG--CGG-----GTT------------AC
gi|15 : -GTTTACG-AAGGAGTTATC-AGCGA--CTGATCACATCTTTCCATATATATC--TCAA----TG-TACTCTGCCTT-----A-GA-----------TT---ta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TCTAAACTAATGATAAATTTTAGGTGCGAGCCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATAATT
Unaligned ( gi|9 ): TTCTAAACTATTGATAAATTTTAGTGCGAACCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATA
Unaligned ( gi|11 ): ATGTTATAATTGACAGAATCACCATATTTACGACTTCCCCCCCCCCCCCCCTGCAAAAAAACCCTCAGGCAGAAGCGTAGCGACTGATTTTGATAGGGGAGGGGCAAACT
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 11111 11111 11111 1111 666666666666666666666666666666 111 111 1111 2222 77777777777777777777777 1111 11 3333333333 111 11111 55555555555555555555555555555 111111 4444444444 11 2222 11 5555555555555555 1 1 333333333 1 111 11 11 11 22222 11 000000000000000000000000 1 111 1 44444444444444 222222 1 11 11 333333333 11 2222222222 11 22 1111111 1111 1 7777777777777777777777777777 22222 11111 4444444444 11 1
lowQualScore : 5 3 2 1 2 9999 99999 5 22222 2 5 66666 6 6 666 1 4444 000000000000000000000000000000 000 111 4444 1 5555 8 0 8 2 11111111111111111111111 3333 8 11 0 1111111111 8 333 44444 5 5 0 55555555555555555555555555555 5 9999 0 777777 1 4 4444444444 33 3 1111 11 3333333333333333 4 0 0 999999999 0 4 444 0 11 8 8 66 11 00000 11 777777777777777777777777 5 777 0 99999999999999 888888 0 33 1 33 1 3 666666666 2 0 33 9999999999 8 8 0 1 8 11 3 44 8888888 2 0000 0 2222222222222222222222222222 1 1 77777 55555 1111111111 88 5
lowQualScore : . . . . . .... ..... . ..... . . ..... . . ... . .... .............................. ... ... .... . .... . . . . ....................... .... . .. . .......... . ... ..... . . . ............................. . .... . ...... . . .......... .. . .... .. ................ . . . ......... . . ... . .. . . .. .. ..... .. ........................ . ... . .............. ...... . .. . .. . . ......... . . .. .......... . . . . . .. . .. ....... . .... . ............................ . . ..... ..... .......... .. .
lowQualScore : 0 4 8 8 7 4444 33333 0 66666 2 0 55555 7 7 888 7 2222 888888888888888888888888888888 222 777 2222 0 0000 0 8 0 8 88888888888888888888888 2222 0 00 8 0000000000 0 333 33333 7 7 3 99999999999999999999999999999 0 9999 8 999999 3 2 8888888888 88 2 2222 00 0000000000000000 2 0 0 555555555 0 0 000 8 00 0 0 66 00 00000 00 000000000000000000000000 0 555 0 55555555555555 888888 0 88 0 88 0 2 000000000 5 8 88 0000000000 0 0 8 0 0 00 8 22 8888888 5 5555 0 1111111111111111111111111111 0 0 33333 88888 5555555555 55 5
consensus : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATA-ATGCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---AA----G--GG-GGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTCCCCCCCCCG--CTNC----TA--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----A---CATT-ACCANAG---TTCAAGGACA--GACATT-GCGTAAG-ATTTG--CGG-----CTT--AC--AAATTA-CGAN------CCNCGTCTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AGC--ATTTTCCAC--GGAACTTTTCC--CG-A---TTTTTGATTA--ACGA--A-A-TAT-ATT-GTTTACG-AAGGAGTTGTCTG-CGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGAT-----------T---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
Reference ( family-219 ) : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGANAACTTAT----A-AATA-ACGCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---AA----G-GGG-GGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTCCCCCCCCCG--CTGC----TA--CACCCATG----ATT-NCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----A---CATT-ACCATAG---TTCAAGGACA--GACATT-GCGTAAG-ATTTG--CGG-----CTT--AC--AAANNN-CGGG------CC---TCTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AGC--ATTTNCCAC--GNAACTTTTCC--CG-A---TTTTTGATTA--ACGA--A-A-TAT-ATT-GTTTACG-AAGGAGTTGTCNG-CGA--CTGATCANA-CTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----A-GAT-----------T---CAGACNANTTTGTTATCATATTCTGATTGNATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
gi|1 : TGAAGAGGGA------GGA-AGGCCCAACTTCATAA-G-GAATGCG-AATAGCAAAAATTCATAGGAA-GC-TTGATGGGAAAATCACTGTATCGCTGTCAA-------TAGTTGTTGATGTG-GTGGGGAG---GGGAGAGGGGCAACTTATTAAAA-AGTA-ATGCGAC-------------AGAAAATTTAAGAAAGGTAA-TAAGAAAAACTGAGGA-------GG-GGG-A-TTCTAAAT------A-TG-TGTCATGATGCAG-----------------------------GG-GGGGGTGGGCAAAAACTT-AACCTATTG-ATTG-TCCATCCCCCCTCCCCCCGGCG---TAA----TAACTACCCATGTTAGATT-ACCAACATCAAGGATTTGATTCTTCTAGCATGGTTCAGT-CACAAGTA---CTGT-ACCATAGAGTTTCAAGGACATGGACATTAGCGTAAGCATATGGGCGGAAATACTT--AC--AAATGT-CGGGTAATCCCCGT-TCTTTCCACTACACAG-TTCTATGTGTATTAATATACA------TGT-GTC--ATTTCCTACTCGCAACTCTTCCTCCG-GATTTTTTTGATCATTACGA--AGA-TATTATTTGTTTACG-AGGACGTTGTCTTTCGAAGCTGATCAGA--TCCCTAT---T--CATTCGTCAA-TGCTACTGCGCTCT-----A-GATAAAGTAGATTTT---CAGACAACTTTGTTATC-TATTCTGATTGGATTATACCCTCTTTCCAA----TTC--AGTTCATAGG
gi|10 : TTTTAAAT-----TA-TG-A--CATGTTGAAGACAAAAAATTACTTGACGGAAA----GTGGA-GGGGGGAGGCAAAAACAT-T--CTTTTG-CCCC-TCAg
gi|10 : ATTTGA----AA----T-TGG-GGTGAGGGGCAAAAGAAT-G--TTTTTG-CC-------TCCCCCCTCCACTTTCCG--ccccaatttcaaattggcatgaatagtttgttctata
gi|11 : ttttaaattatgacatgttgaagacaaaaaattacttgaCAGAAGCGTAGCGACTG-ATTTTGA-TAGGGGAG----GGG-----CAAACTtggcatgaatagtttgttctata
gi|12 : atgttataattgacagaatcaccatatttacgacttccccccccccccccctgcaaaaaaaccctcaggCATAGGCGTAG-AACTGTCTTT--AAATGGGGAG----GGGTGGGGCAAACATC-TAA-A-AATTGTG-ACAAGCAAAA--
gi|13 : ccccaaaaaaaccaaaGTGTAG-GACTGTTTTT----GAGGGGAG----GGG--------ACTTA-AAA-C-TGATGTG-ACAAGC-------CA-AAAAA-GG-T-AATTGAA----CACT-----------AA-------T---TGT--GTGT---TGGGGGG---aaccccaacaaaaacgtgttaaag
gi|14 : ac-ACTTCTAAAT-----TA-TG-TGACATGTTGCAG------AGTTACTTGAC---AA----A-AAGTGGGGGGAGGCAAAATCAT-A--CTTTT
gi|15 : a-GTTTACG-AAGGAGTTATCAG-CGA--CTGATCACATCTTTCCATATAT---ATC--TCAA-TG-TACTCTGCCTT-----A-GAT-----------T---t
gi|16 : AGGCGTAG-GACTGTTTTT--AAG-GGGGTG----GGG-G------ACTTC-TAA-A-TAATGTG-ACAAGC
gi|17 : TAGGCGTAG-CACTGTC-TTTGACAAGGGGGG----GGG-
gi|18 : ataattcct---TTCAAGGACA--GACATT-GCGTAAG-A-TTG--CGG-----GTT--AC--
gi|2 : CATAGGCGTAG-GACTGTCCTTTGAAGAGGGGAG----GGG-GGAGCAAACTTC-TGC-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTA----------AA-------TG--TGT--GTGTGCGTGGGGGG---GGG----GGGGGACTTAT----A-AATACCCGCGAC-------------A---------AGAA----AA-TAA--AGAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTC-TAATGCAGAAAAAAAGTTACTTGAC---AAGGGGG-GGG-GGGGGGGGGCTAAAACAT-A--CTATTG-ACTT-TCAATCCCTCCCCCCCCCCCCG--CT-C----TA--CACCC-TG----ATTCCCCAATAC---GG-----------CCAGCATG-TTCAGT-CA-----A---CATT-ACCAAAG---TTCAAGGACA--GACATA-GCGTAAG-ATTTG--CGG-----CTT--AC--A---------------------TCTTTCCA-CAC---GTTTC---G-GT-------TATA------TGT-AGC--ATTTTCCAC--AGAAC-TTTCC--CG-A---TTTTTGATTG--ACGAAGA-A-TAT-ATT-GTTTACA-AAGGAGTTGTCTG-CGA--CTGATCAGATTTCTCCATACATCCCATTCGT----TG-TACTGTGCCTT-----ACGAT-----------T---CA-ACACGTTTGT--TCATATTCTGATTta
gi|3 : ATAGGCGTAG-GGATGTCTTT-GAAGAAGGGAGATAGGGG-AAGGCAAACTTC-TAAAG-TAGTGCGCACATGCAAAAA-TCA-AAAAAAGC-T-TATGGAA----CACTA----------AATGATGTGTG--TGT--GTGTG-GTGACGCGCCAGGC----GGAGAACTTATA---A-AATA-ATGCGACAAAAACCAAATTTA---------AGAAGAGTAATTAG--AAAACTGA--A-------GG-GGA---TTCTAAAT-----TACTGTTGCCATGATGCAGAA------------GCC---A------------GGGGGGGGCAAAAACATAA--CTATTGCATTTGTCCATCCCTCCTCTCCTCCCCaactttctattcagtcatagg
gi|4 : tttaaactaagataaattttaggtgcggaacccggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacggagaataattcaG----GGGCAACTTAT----ATAATA-ATGCGAC-------------A---------AAAAAGGCAA-TAA--AACACTGA--ATGGGGGTGG-GGGCGCTTCTCAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTAACTTGAC------------GG-GGGGGAGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCC---------CCTCGGACTCT----TA--CACTCATG----ATT-TCCAATAC---AG-----------CCAGCAAG-TTCAGT-GA-----C---AATT-ATCATAA---TTCAAGGACA--TATATT-GCGTAAG-A-TTG--CGG-----CTT--AC--AAAATA-CAAA------CCTCGTCTTTTCA-CAC---G-TTC---G-GT-------TATA------TGT-AGC--ATTTACCAC--AGAGCTTTTCCA-CG-AT--TTTTTGATTA--ACGA--A-----------GTTAAGG-AAGGAGTTGTCAG-TGA--CTGACCATA-CTCTCCATcccccccac
gi|5 : aCCCCCCCG--CGGCGTAATA--CACCCATG----ATT-CCCAATAT---GA-----------CCAGCACG-TTCAGCACA-----ATTACATTTACCAAAG---T-CAAGAACA--GACATT-GCGTAAG-AT--G--CGG-----CTTTTACCAAAATTAACAAT------CCCCGTCTTTCCACCAC---G-CTC---G----------TATAAATAATTGTCAGCCCATTTTCCAC--GAAACTTTCCC--CGGA---TTTTT-ATGA--ACGA--A-AATAT-ATT-GTTTACGCAAGGAGT-GT-TG-CGC--CTGAT--------TCCAGACGC--CATTCGTTAACTG-TACTGCGCCCCTCACAACGAC-----------TTCCCA-ACCAGTTTGTT---ATATTCTG-----ATTATACCTTTT-----ACAATTTCAAAG-TCATAGGt
gi|6 : ATAGGCGTAG-GACTGT-TTTTG-AGAAAGGGG----GGG-GGGGCAAACTTC-TA-----AATG-G-GCAAGCAAA-----A-AAAAG-GCAC-AATAG-A----CAC-------------A-------TG--T-T--TTTTG-ACGGGGAG---GGG----TGA
gi|6 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaAAAA--TACTTGACAATAA----G-TGG-GGGGAGGGG-ATAAACAT-G--CTTTTG-CC----CACTCCCTcggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgaaaatacttgacaataagtggggggaggggataaacatgcttttgcccactcccttt
gi|8 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaataggcgtaggactgtttttgagaaagggggggggggcaaacttctaaatgggcaagcaaaaaaaaggcacaatagacacatgttttttgacggggaggggtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgAACTTC-AAA-AATAATGCG-ATACG-AATA--T-A-GAAAA-GG-T-AATACAA----CACTG----------AA-------------------------GAGGG---GAG----GGAAAACTTCT----A-AA-A-AT-----------------------------------CAA-TAG--ATG--TGG--G-------GGAGGG-GCTTCTAAATTACGGTA-TG-TGTCATGAtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTAAACTAATGATAAATTTTAGGTGCGAGCCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATAATT
Unaligned ( gi|9 ): TTCTAAACTATTGATAAATTTTAGTGCGAACCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATA
Alignments
lowQualScore : 1 11111 11111 11111 1111 666666666666666666666666666666 111 111 1111 2222 77777777777777777777777 1111 11 3333333333 111 11111 555555555555555555555555555555 111111 3333333333 11 2222 11 5555555555555555 1 1 444444444 1111 11 111111 22222222 44444444444444444 1 111 1 44444444444444 222222 11111 11 222222222 11 11 22222222222 11 1111111 1111 1 6666666666666666666666666 1 2222 4444444444 11 1
lowQualScore : 5 3 2 1 2 9999 99999 5 22222 2 5 66666 6 6 666 1 4444 000000000000000000000000000000 000 111 4444 1 5555 8 0 8 11111111111111111111111 3333 8 11 0 1111111111 8 333 44444 5 5 0 999999999999999999999999999999 9999 0 777777 1 4 8 2222222222 11 3 1111 00 3333333333333333 4 0 0 333333333 1 4444 11 8 8 333333 66666666 55555555555555555 4 0 99 777 0 99999999999999 888888 44444 1 33 0 3 666666666 22 0 33 00000000000 8 8 0 99 11 3 5 8888888 2 0000 0 2222222222222222222222222 3 7 6666 6 2 1111111111 88 5
lowQualScore : . . . . . .... ..... . ..... . . ..... . . ... . .... .............................. ... ... .... . .... . . . ....................... .... . .. . .......... . ... ..... . . . .............................. .... . ...... . . . .......... .. . .... .. ................ . . . ......... . .... .. . . ...... ........ ................. . . .. ... . .............. ...... ..... . .. . . ......... .. . .. ........... . . . .. .. . . ....... . .... . ......................... . . .... . . .......... .. .
lowQualScore : 0 4 8 8 7 4444 33333 0 66666 2 0 55555 7 7 888 7 2222 888888888888888888888888888888 222 777 2222 0 0000 0 8 0 88888888888888888888888 2222 0 00 8 0000000000 0 333 33333 7 7 3 000000000000000000000000000000 9999 8 999999 3 2 0 0000000000 00 2 2222 22 0000000000000000 2 0 0 222222222 0 8888 00 0 0 444444 00000000 55555555555555555 5 0 00 555 0 55555555555555 888888 88888 2 88 2 2 000000000 55 8 88 00000000000 0 0 8 44 00 8 6 8888888 5 5555 0 8888888888888888888888888 3 3 3333 7 5 5555555555 55 5
consensus : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATA-ATGCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---AA-----G--GGGGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTC-CCCCCCCCG--CTNC----TA--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAG---TTCAAGGACA--GACATT-GCGTAAG-ATTTG--CGG-----C--TTAC--AAATT-ACG----ATCCCCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTT-GATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTC-TGCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
Reference ( family-219 ) : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATA-ATGCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---AA-----G--GGGGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTC-CCCCCCCCG--CTNC----TA--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAG---TTCAAGGACA--GACATT-GCGTAAG-ATTTG--CGG-----C--TTAC--AAATT-ACG----ANCCNCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTT-GATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTC-TGCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
gi|1 : TGAAGAGGGA------GGA-AGGCCCAACTTCATAA-G-GAATGCG-AATAGCAAAAATTCATAGGAA-GC-TTGATGGGAAAATCACTGTATCGCTGTCAA-------TAGTTGTTGATGTG-GTGGGGAG---GGGAGAGGGGCAACTTATTAAAA-AGTA-ATGCGAC-------------AGAAAATTTAAGAAAGGTAA-TAAGAAAAACTGAGGA-------GG-GGG-A-TTCTAAAT------A-TG-TGTCATGATGCAG------------------------------GGGGGGGTGGGCAAAAACTT-AACCTATTG-ATTG-TCCATCCCCCCTC-CCCCCGGCG---TAA----TAACTACCCATGTTAGATT-ACCAACATCAAGGATTTGATTCTTCTAGCATGGTTCAGT-CACAAGTACT-GTACCATAGAGTTTCAAGGACATGGACATTAGCGTAAGCATATGGGCGGAAATAC--TTAC--AAATG-TCGGGTAATCCCCGTTCTTTCCACTACACAG-TTCTATGTGTATTAATATACA------TGT-GT--CATTTCCTACTCGCAACTCTTCCTCC-GGATTTTTTT-GATCATTACG-A--AGATATTATTTGTTTACG-AGGACGTTGTCTTTCGAAGCTGATCAGATCCCT--AT---T--CATTCGTCAA-TGCTACTGCGCTCT-----A-GATAAAGTAGATTTT---CAGACAACTTTGTTATC-TATTCTGATTGGATTATACCCTCTTTCCAA----TTC--AGTTCATAGG
gi|10 : TTTTAAAT-----TA-TG-A--CATGTTGAAGACAAAAAATTACTTGACGGAAA-----GTGGAGGGGGGAGGCAAAAACAT-T--CTTTTG-CCCC-TCAg
gi|10 : ATTTGAA---AT-----T--GGGGTGAGGGGCAAAAGAAT-G--TTTTTG-CC-------TCCCCCCTC-CACTTTCCG--ccccaatttcaaattggcatgaatagtttgttctata
gi|11 : ttttaaattatgacatgttgaagacaaaaaattacttgaCAGAAGCGTAGCGACTG-ATTTTGA-TAGGGGAG----GGG-----CAAACTtggcatgaatagtttgttctata
gi|12 : atgttataattgacagaatcaccatatttacgacttccccccccccccccctgcaaaaaaaccctcaggCATAGGCGTAG-AACTGTCTTT--AAATGGGGAG----GGGTGGGGCAAACATC-TAA-A-AATTGTG-ACAAGCAAAA--
gi|13 : ccccaaaaaaaccaaaGTGTAG-GACTGTTTTT----GAGGGGAG----GGG--------ACTTA-AAA-C-TGATGTG-ACAAGC-------CA-AAAAA-GG-T-AATTGAA----CACT-----------AA-------T---TGT--GTGT---TGGGGGG---aaccccaacaaaaacgtgttaaag
gi|14 : ac-ACTTCTAAAT-----TA-TG-TGACATGTTGCAG------AGTTACTTGACAA-AA-----A--GTGGGGGGAGGCAAAATCAT-A--CTTTT
gi|15 : a-GTTTACG-AAGGAGTTATC-AGCGA--CTGATCACATCTTTCCATATAT---ATC--TCAA-TG-TACTCTGCCTT-----A-GA-----------TT---t
gi|16 : AGGCGTAG-GACTGTTTTT--AAG-GGGGTG----GGG-G------ACTTC-TAA-A-TAATGTG-ACAAGC
gi|17 : TAGGCGTAG-CACTGTC-TTTGACAAGGGGGG----GGG-
gi|18 : ataattcct---TTCAAGGACA--GACATT-GCGTAAG-A-TTG--CGG-----G--TTAC--
gi|2 : CATAGGCGTAG-GACTGTCCTTTGAAGAGGGGAG----GGG-GGAGCAAACTTC-TGC-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTA----------AA-------TG--TGT--GTGTGCGTGGGGGG---GGG----GGGGGACTTAT----A-AATACCCGCGAC-------------A---------AGAA----AA-TAA--AGAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTC-TAATGCAGAAAAAAAGTTACTTGAC---AAGGGGGG--GGGGGGGGGGGCTAAAACAT-A--CTATTG-ACTT-TCAATCCCTCCCC-CCCCCCCCG--CT-C----TA--CACCC-TG----ATTCCCCAATAC---GG-----------CCAGCATG-TTCAGT-CA-----ACA-TTACCAAAG---TTCAAGGACA--GACATA-GCGTAAG-ATTTG--CGG-----C--TTAC--A-------------------T-CTTTCCA-CAC---GTTTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--AGAAC-TTTCC--C-GA---TTTTT-GATTG--ACG-AAGA-ATAT-ATT-GTTTACA-AAGGAGTTGTC-TGCGA--CTGATCAGATTTCTCCATACATCCCATTCGT----TG-TACTGTGCCTT-----ACGA-----------TT---CA-ACACGTTTG-T-TCATATTCTGATTta
gi|3 : ATAGGCGTAG-GGATGTCTTT-GAAGAAGGGAGATAGGGG-AAGGCAAACTTC-TAAAG-TAGTGCGCACATGCAAAAA-TCA-AAAAAAGC-T-TATGGAA----CACTA----------AATGATGTGTG--TGT--GTGTG-GTGACGCGCCAGGC----GGAGAACTTATA---A-AATA-ATGCGACAAAAACCAAATTTA---------AGAAGAGTAATTAG--AAAACTGA--A-------GG-GGA---TTCTAAAT-----TACTGTTGCCATGATGCAGAA------------GCC---A------------GGGGGGGGCAAAAACATAA--CTATTGCATTTGTCCATCCCTCCTCTCCTCCCCCC--CCCC----CA--Caactttctattcagtcatagg
gi|4 : tttaaactaagataaattttaggtgcggaacccggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacggagaataattcaG----GGGCAACTTAT----ATAATA-ATGCGAC-------------A---------AAAAAGGCAA-TAA--AACACTGA--ATGGGGGTGG-GGGCGCTTCTCAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTAACTTGAC-------------GGGGGGGAGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCC----------CCTCGGACTCT----TA--CACTCATG----ATT-TCCAATAC---AG-----------CCAGCAAG-TTCAGT-GA-----CAA-TTATCATAA---TTCAAGGACA--TATATT-GCGTAAG-ATT-G--CGG-----C--TTAC--AAAAT-ACA----AACCTCGT-CTTTTCAC-AC---G-TTC---G-GT-------TATA------TGT-AG--CATTTACCAC--AGAGCTTTTCCA-C-GA---TTTTTTGATTA--ACG-A--A----------GTTAAGG-AAGGAGTTGTC-AGTGA--CTGACCATA-CTCTCCAT
gi|5 : aCCCCCCCG--CGGCGTAATA--CACCCATG----ATT-CCCAATAT---GA-----------CCAGCACG-TTCAGCACAATT--ACATTTACCAAAG----TCAAGAACA--GACATT-GCGTAAG-A--TG--CGG-----CTTTTACCAAAATTAACA----ATCCCCGT-CTTTCCACCAC---G-CTC---G----------TATAAATAATTGTCAGCCCATTTTCCAC--GAAACTTTCCC--CGGA---TTTTT--ATGA--ACGAA--A-ATAT-ATT-GTTTACGCAAGGAG-TGT--TGCGC--CTGAT--------TCCAGACGC--CATTCGTTAACTG-TACTGCGCCCCTCACAACGA-----------CTTCCCA-ACCAGTTTGTT---ATATTCT-----GATTATACCTTTT-----ACAATTTCAAAG-TCATAGGt
gi|6 : ATAGGCGTAG-GACTGT-TTTTG-AGAAAGGGG----GGG-GGGGCAAACTTC-TA-----AATG-G-GCAAGCAAA-----A-AAAAG-GCAC-AATAG-A----CAC-------------A-------TG--T-T--TTTTG-ACGGGGAG---GGG----
gi|6 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaAAAA--TACTTGACAATAA-----G--TGGGGGGAGGGGATAAACAT-G--CTTTTG-CC----CACTCCCTtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgaaaatacttgacaataagtggggggaggggataaacatgcttttgcccactcccttt
gi|8 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaataggcgtaggactgtttttgagaaagggggggggggcaaacttctaaatgggcaagcaaaaaaaaggcacaatagacacatgttttttgacggggaggggtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgAACTTC-AAA-AATAATGCG-ATACG-AATA--T-A-GAAAA-GG-T-AATACAA----CACTG----------AA-------------------------GAGGG---GAG----GGAAAACTTCT----A-AA-A-AT-----------------------------------CAA-TAG--ATG--TGG--G-------GGAGGG-GCTTCTAAATTACGGTA-TG-TGTCATGAtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTAAACTAATGATAAATTTTAGGTGCGAGCCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATAATT
Unaligned ( gi|9 ): TTCTAAACTATTGATAAATTTTAGTGCGAACCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATA
Alignments
lowQualScore : 1 11111 11111 11111 1111 666666666666666666666666666666 111 111 1111 2222 77777777777777777777777 1111 11 3333333333 111 11111 555555555555555555555555555555 111111 3333333333 11 2222 11 5555555555555555 1 1 444444444 1111 11 111111 22222222 44444444444444444 1 111 1 44444444444444 222222 11111 11 222222222 11 11 22222222222 11 1111111 1111 1 6666666666666666666666666 1 2222 4444444444 11 1
lowQualScore : 5 3 2 1 2 9999 99999 5 22222 2 5 66666 6 6 666 1 4444 000000000000000000000000000000 000 111 4444 1 5555 8 0 8 11111111111111111111111 3333 8 11 0 1111111111 8 333 44444 5 5 0 999999999999999999999999999999 9999 0 777777 1 4 8 2222222222 11 3 1111 00 3333333333333333 4 0 0 333333333 1 4444 11 8 8 333333 66666666 44444444444444444 0 0 99 777 0 99999999999999 888888 44444 1 33 0 3 666666666 22 0 33 00000000000 8 8 0 99 11 3 5 8888888 2 0000 0 2222222222222222222222222 3 7 6666 6 2 1111111111 88 5
lowQualScore : . . . . . .... ..... . ..... . . ..... . . ... . .... .............................. ... ... .... . .... . . . ....................... .... . .. . .......... . ... ..... . . . .............................. .... . ...... . . . .......... .. . .... .. ................ . . . ......... . .... .. . . ...... ........ ................. . . .. ... . .............. ...... ..... . .. . . ......... .. . .. ........... . . . .. .. . . ....... . .... . ......................... . . .... . . .......... .. .
lowQualScore : 0 4 8 8 7 4444 33333 0 66666 2 0 55555 7 7 888 7 2222 888888888888888888888888888888 222 777 2222 0 0000 0 8 0 88888888888888888888888 2222 0 00 8 0000000000 0 333 33333 7 7 3 000000000000000000000000000000 9999 8 999999 3 2 0 0000000000 00 2 2222 22 0000000000000000 2 0 0 222222222 0 8888 00 0 0 444444 00000000 55555555555555555 2 0 00 555 0 55555555555555 888888 88888 2 88 2 2 000000000 55 8 88 00000000000 0 0 8 44 00 8 6 8888888 5 5555 0 8888888888888888888888888 3 3 3333 7 5 5555555555 55 5
consensus : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATA-ATGCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---AA-----G--GGGGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTC-CCCCCCCCG--CTNC----TA--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAG---TTCAAGGACA--GACATT-GCGTAAG-ATTTG--CGG-----C--TTAC--AAATT-ACG----ATCCCCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTT-GATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTC-TGCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
Reference ( family-219 ) : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATA-ATGCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---AA-----G--GGGGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTC-CCCCCCCCG--CTNC----TA--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAG---TTCAAGGACA--GACATT-GCGTAAG-ATTTG--CGG-----C--TTAC--AAATT-ACG----ATCCCCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTT-GATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTC-TGCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
gi|1 : TGAAGAGGGA------GGA-AGGCCCAACTTCATAA-G-GAATGCG-AATAGCAAAAATTCATAGGAA-GC-TTGATGGGAAAATCACTGTATCGCTGTCAA-------TAGTTGTTGATGTG-GTGGGGAG---GGGAGAGGGGCAACTTATTAAAA-AGTA-ATGCGAC-------------AGAAAATTTAAGAAAGGTAA-TAAGAAAAACTGAGGA-------GG-GGG-A-TTCTAAAT------A-TG-TGTCATGATGCAG------------------------------GGGGGGGTGGGCAAAAACTT-AACCTATTG-ATTG-TCCATCCCCCCTC-CCCCCGGCG---TAA----TAACTACCCATGTTAGATT-ACCAACATCAAGGATTTGATTCTTCTAGCATGGTTCAGT-CACAAGTACT-GTACCATAGAGTTTCAAGGACATGGACATTAGCGTAAGCATATGGGCGGAAATAC--TTAC--AAATG-TCGGGTAATCCCCGTTCTTTCCACTACACAG-TTCTATGTGTATTAATATACA------TGT-GT--CATTTCCTACTCGCAACTCTTCCTCC-GGATTTTTTT-GATCATTACG-A--AGATATTATTTGTTTACG-AGGACGTTGTCTTTCGAAGCTGATCAGATCCCT--AT---T--CATTCGTCAA-TGCTACTGCGCTCT-----A-GATAAAGTAGATTTT---CAGACAACTTTGTTATC-TATTCTGATTGGATTATACCCTCTTTCCAA----TTC--AGTTCATAGG
gi|10 : TTTTAAAT-----TA-TG-A--CATGTTGAAGACAAAAAATTACTTGACGGAAA-----GTGGAGGGGGGAGGCAAAAACAT-T--CTTTTG-CCCC-TCAg
gi|10 : ATTTGAA---AT-----T--GGGGTGAGGGGCAAAAGAAT-G--TTTTTG-CC-------TCCCCCCTC-CACTTTCCG--ccccaatttcaaattggcatgaatagtttgttctata
gi|11 : ttttaaattatgacatgttgaagacaaaaaattacttgaCAGAAGCGTAGCGACTG-ATTTTGA-TAGGGGAG----GGG-----CAAACTtggcatgaatagtttgttctata
gi|12 : atgttataattgacagaatcaccatatttacgacttccccccccccccccctgcaaaaaaaccctcaggCATAGGCGTAG-AACTGTCTTT--AAATGGGGAG----GGGTGGGGCAAACATC-TAA-A-AATTGTG-ACAAGCAAAA--
gi|13 : ccccaaaaaaaccaaaGTGTAG-GACTGTTTTT----GAGGGGAG----GGG--------ACTTA-AAA-C-TGATGTG-ACAAGC-------CA-AAAAA-GG-T-AATTGAA----CACT-----------AA-------T---TGT--GTGT---TGGGGGG---aaccccaacaaaaacgtgttaaag
gi|14 : ac-ACTTCTAAAT-----TA-TG-TGACATGTTGCAG------AGTTACTTGACAA-AA-----A--GTGGGGGGAGGCAAAATCAT-A--CTTTT
gi|15 : a-GTTTACG-AAGGAGTTATC-AGCGA--CTGATCACATCTTTCCATATAT---ATC--TCAA-TG-TACTCTGCCTT-----A-GA-----------TT---t
gi|16 : AGGCGTAG-GACTGTTTTT--AAG-GGGGTG----GGG-G------ACTTC-TAA-A-TAATGTG-ACAAGC
gi|17 : TAGGCGTAG-CACTGTC-TTTGACAAGGGGGG----GGG-
gi|18 : ataattcct---TTCAAGGACA--GACATT-GCGTAAG-A-TTG--CGG-----G--TTAC--
gi|2 : CATAGGCGTAG-GACTGTCCTTTGAAGAGGGGAG----GGG-GGAGCAAACTTC-TGC-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTA----------AA-------TG--TGT--GTGTGCGTGGGGGG---GGG----GGGGGACTTAT----A-AATACCCGCGAC-------------A---------AGAA----AA-TAA--AGAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTC-TAATGCAGAAAAAAAGTTACTTGAC---AAGGGGGG--GGGGGGGGGGGCTAAAACAT-A--CTATTG-ACTT-TCAATCCCTCCCC-CCCCCCCCG--CT-C----TA--CACCC-TG----ATTCCCCAATAC---GG-----------CCAGCATG-TTCAGT-CA-----ACA-TTACCAAAG---TTCAAGGACA--GACATA-GCGTAAG-ATTTG--CGG-----C--TTAC--A-------------------T-CTTTCCA-CAC---GTTTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--AGAAC-TTTCC--C-GA---TTTTT-GATTG--ACG-AAGA-ATAT-ATT-GTTTACA-AAGGAGTTGTC-TGCGA--CTGATCAGATTTCTCCATACATCCCATTCGT----TG-TACTGTGCCTT-----ACGA-----------TT---CA-ACACGTTTG-T-TCATATTCTGATTta
gi|3 : ATAGGCGTAG-GGATGTCTTT-GAAGAAGGGAGATAGGGG-AAGGCAAACTTC-TAAAG-TAGTGCGCACATGCAAAAA-TCA-AAAAAAGC-T-TATGGAA----CACTA----------AATGATGTGTG--TGT--GTGTG-GTGACGCGCCAGGC----GGAGAACTTATA---A-AATA-ATGCGACAAAAACCAAATTTA---------AGAAGAGTAATTAG--AAAACTGA--A-------GG-GGA---TTCTAAAT-----TACTGTTGCCATGATGCAGAA------------GCC---A------------GGGGGGGGCAAAAACATAA--CTATTGCATTTGTCCATCCCTCCTCTCCTCCCCCC--CCCC----CA--Caactttctattcagtcatagg
gi|4 : tttaaactaagataaattttaggtgcggaacccggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacggagaataattcaG----GGGCAACTTAT----ATAATA-ATGCGAC-------------A---------AAAAAGGCAA-TAA--AACACTGA--ATGGGGGTGG-GGGCGCTTCTCAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTAACTTGAC-------------GGGGGGGAGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCC----------CCTCGGACTCT----TA--CACTCATG----ATT-TCCAATAC---AG-----------CCAGCAAG-TTCAGT-GA-----CAA-TTATCATAA---TTCAAGGACA--TATATT-GCGTAAG-ATT-G--CGG-----C--TTAC--AAAAT-ACA----AACCTCGT-CTTTTCAC-AC---G-TTC---G-GT-------TATA------TGT-AG--CATTTACCAC--AGAGCTTTTCCA-C-GA---TTTTTTGATTA--ACG-A--A----------GTTAAGG-AAGGAGTTGTC-AGTGA--CTGACCATA-CTCTCCAT
gi|5 : aCCCCCCCG--CGGCGTAATA--CACCCATG----ATT-CCCAATAT---GA-----------CCAGCACG-TTCAGCACAATT--ACATTTACCAAAG----TCAAGAACA--GACATT-GCGTAAG-A--TG--CGG-----CTTTTACCAAAATTAACA----ATCCCCGT-CTTTCCACCAC---G-CTC---G----------TATAAATAATTGTCAGCCCATTTTCCAC--GAAACTTTCCC--CGGA---TTTTT--ATGA--ACGAA--A-ATAT-ATT-GTTTACGCAAGGAG-TGT--TGCGC--CTGAT--------TCCAGACGC--CATTCGTTAACTG-TACTGCGCCCCTCACAACGA-----------CTTCCCA-ACCAGTTTGTT---ATATTCT-----GATTATACCTTTT-----ACAATTTCAAAG-TCATAGGt
gi|6 : ATAGGCGTAG-GACTGT-TTTTG-AGAAAGGGG----GGG-GGGGCAAACTTC-TA-----AATG-G-GCAAGCAAA-----A-AAAAG-GCAC-AATAG-A----CAC-------------A-------TG--T-T--TTTTG-ACGGGGAG---GGG----
gi|6 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaAAAA--TACTTGACAATAA-----G--TGGGGGGAGGGGATAAACAT-G--CTTTTG-CC----CACTCCCTtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgaaaatacttgacaataagtggggggaggggataaacatgcttttgcccactcccttt
gi|8 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaataggcgtaggactgtttttgagaaagggggggggggcaaacttctaaatgggcaagcaaaaaaaaggcacaatagacacatgttttttgacggggaggggtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgAACTTC-AAA-AATAATGCG-ATACG-AATA--T-A-GAAAA-GG-T-AATACAA----CACTG----------AA-------------------------GAGGG---GAG----GGAAAACTTCT----A-AA-A-AT-----------------------------------CAA-TAG--ATG--TGG--G-------GGAGGG-GCTTCTAAATTACGGTA-TG-TGTCATGAtt
blockSeqs : . C T A A ATAG TGGGG . AAGT T C AATC . A AC A . AAATGATGTGTGTGTG GCG CCA . G A T C AAAAACCAAATTTA GAGT T . ATGGGGGT A CGC TACGG C T ACAAAAAATTACTTGACGGAAAGTG AA CATTTG A C T CGGCGTAA . A . CC GG T . A ATTACAT A T . . . TTTG CTT CAAAATTAACAAT . CC . T GGT AATAAT CAGCC T . T ACGA TG . AAGAATAT . C A . C T ACATCCC C TAAC . TCACAACGACTTCC . T TCA G . ACAAT AA .
blockSeqs : . T T A A . GGAG . AAAT T . ATC . . T A . AAATGTGTG GG . . G . . . A AGGC . . A . AC . . . AAAAAAAGTTACTTGACAAGGGGGG T CCCC A T . GACTCT . A . T AG A . . ACA T T . . . TTG G AAAATACAAA . C . . GGT . AG A . T CGGA G . AAAATAT . . T . G T ACGCC C CAA . ACGATT . . A .
blockSeqs : . T T C A . AAGG . AAA T . AT . . T A . AATTGTG GA . . C . . . A C . . A . AC . . . AAAAAAAGTAACTTGAC G ACTT C T . CCCC . . . C GA C . . CAA A T . . . TTG C A . C . . G . AG T . . CGA . . AA . . A . T . ATAT . . . AGATT
blockSeqs : . C T A T . GGGG . ACT C . C . . T A . ATGTTT . . . A . . . . . . . G . GC . . . AGTTACTTGACAAAAA A ACTT A T . CTC . . . . . TG C . . T . . .
blockSeqs : . C . A G . G . AAT C . . . . T . . GAA . . . . . . . AAGCCA A CC A .
blockSeqs : . C . A A . . . CGT C . . . . A CC .
blockSeqs : . . . . A . . . . . . G
blockSeqs : . . G .
blockSeqCons : ATC** T** **** AAATGTGTG********************* GG* **** **** A********************** ** A********* AC* AAAAAAAGTTACTTGACGGAAG******** A*** CTC******* ** T*** ** TTG*** C******* N* **
originalCons : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTG----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATA-ATGCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---AA-----G--GGGGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTC-CCCCCCCCG--CTNC----TA--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAG---TTCAAGGACA--GACATT-GCGTAAG-ATTTG--CGG-----C--TTAC--AAATT-ACG----ATCCCCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTT-GATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTC-TGCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
finalCons : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAATC--A-AAAAA-GCT--AATGGAA----CACTAAATGTGTG---------------------TGTGG-TGGGGGG---GGG----GGGNAACTTAT----A-AATA-ATGCGACA----------------------AGAAAGGCAA-TAA--AAAACTGAA---------GG-GGGAC-TTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGACGGAAG--------GGGGGGGGGGGCAAAAACATA---CTTTTG-ACTT-TCAATCCCTCCTC-CCCCCCCCGCTC-------TA--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAGT---TCAAGGACA--GACATT-GCGTAAG-ATTG---CGGC-------TTAC--AAATT-ACG----ATCCCCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTT-GATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTCN-GCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTAAACTAATGATAAATTTTAGGTGCGAGCCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATAATT
Unaligned ( gi|9 ): TTCTAAACTATTGATAAATTTTAGTGCGAACCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATA
Alignments
lowQualScore : 1 11111 11111 11111 1111 55555555555555555555555555555555555 111 1111 2222 77777777777777777777777 11 3333333333 111 11111 5555555555555555555555555555555 1111 111111 333333333333333 2222 11 5555555555555555 1 1 444444444 1111 11 111 11 22222222 44444444444444444 1 1 111 1 44444444444444 222222 11111 11 333333333 11 22222222222 11 1111111 1111 1 6666666666666666666666666 1 2222 4444444444 11 1
lowQualScore : 5 3 2 1 2 9999 99999 5 22222 2 5 66666 6 6 666 1 4444 55555555555555555555555555555555555 111 4444 1 5555 8 0 8 11111111111111111111111 999 8 11 0 1111111111 8 333 44444 5 5 0 2222222222222222222222222222222 0000 2 000000 3 0 0 777777777777777 3 1111 00 3333333333333333 4 0 0 333333333 1 4444 11 8 8 666 11 66666666 44444444444444444 0 0 5 777 0 99999999999999 888888 44444 1 33 0 3 666666666 2 0 33 00000000000 8 8 0 99 11 3 5 8888888 2 0000 0 2222222222222222222222222 3 7 6666 6 2 1111111111 88 5
lowQualScore : . . . . . .... ..... . ..... . . ..... . . ... . .... ................................... ... .... . .... . . . ....................... ... . .. . .......... . ... ..... . . . ............................... .... . ...... . . . ............... . .... .. ................ . . . ......... . .... .. . . ... .. ........ ................. . . . ... . .............. ...... ..... . .. . . ......... . . .. ........... . . . .. .. . . ....... . .... . ......................... . . .... . . .......... .. .
lowQualScore : 0 4 8 8 7 4444 33333 0 66666 2 0 55555 7 7 888 7 2222 77777777777777777777777777777777777 777 2222 0 0000 0 8 0 88888888888888888888888 666 0 00 8 0000000000 0 333 33333 7 7 3 4444444444444444444444444444444 4444 1 888888 8 8 2 000000000000000 2 2222 22 0000000000000000 2 0 0 222222222 0 8888 00 0 0 888 00 00000000 55555555555555555 2 0 0 555 0 55555555555555 888888 88888 2 88 2 2 000000000 5 8 88 00000000000 0 0 8 00 00 8 6 8888888 5 5555 0 8888888888888888888888888 3 3 3333 7 5 5555555555 55 5
consensus : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTA----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATAAT-GCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGA-AAAAAGTTACTTGAC---GG-AA---GGGGGGGGGGGGCAAAAACAT-A--CTNTTG-ACTT-TCAATCCCTCCTCCCCCCCCCG--CN-C----T-A--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAG---TTCAAGGACA--GACATT-GCGTAAG-A-T-TG--CGG-----C--TTAC--AAATT-ACG----ATCCCCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTTGATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTC-TGCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
Reference ( family-219 ) : CATAGGCGTAG-GACTGTCTTTTGAAGAGGGGAG----GGG-GGGGCAAACTTC-TAA-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTA----------AA-------TG--TGT--GTGTG-GTGGGGGG---GGG----GGGNAACTTAT----A-AATAAT-GCGAC-------------A---------AGAAAGGCAA-TAA--AAAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTTACTTGAC---GG-AA---GGGGGGGGGGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCCTCCTCCCCCCCCCG--CT-C----T-A--CACCCATG----ATT-CCCAATAC---GG-----------CCAGCACG-TTCAGT-CA-----ACA-TTACCANAG---TTCAAGGACA--GACATT-GCGTAAG-A-T-TG--CGG-----C--TTAC--AAATT-ACG----ATCCCCGT-CTTTCCACCAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--GGAACTTTTCC--C-GA---TTTTTGATTA--ACG-A--A-ATAT-ATT-GTTTACG-AAGGAGTTGTC-NGCGA--CTGATCANATCTCTCCATACGT--CATTCGTCAA-TG-TACTGCGCCCT-----ACGA-----------TT---CA-ACAAGTTTGTT-TCATATTCTGATTGGATTATACCCTCTTTCCAACAATTTCAAAGTTCATAGG
gi|1 : TGAAGAGGGA------GGA-AGGCCCAACTTCATAA-G-GAATGCG-AATAGCAAAAATTCATAGGAA-GC-TTGATGGGAAAATCACTGTATCGCTGTCAA-------TAGTTGTTGATGTG-GTGGGGAG---GGGAGAGGGGCAACTTATTAAAA-AGTAAT-GCGAC-------------AGAAAATTTAAGAAAGGTAA-TAAGAAAAACTGAGGA-------GG-GGG-A-TTCTAAAT------A-TG-TGTCATGATGCAG-----------------------------GGGGGGGTGGGCAAAAACTT-AACCTATTG-ATTG-TCCATCCCCCCTCCCCCCGGCG--TA-A----T-AACTACCCATGTTAGATT-ACCAACATCAAGGATTTGATTCTTCTAGCATGGTTCAGT-CACAAGTACT-GTACCATAGAGTTTCAAGGACATGGACATTAGCGTAAGCA-TATGGGCGGAAATAC--TTAC--AAATG-TCGGGTAATCCCCGTTCTTTCCACTACACAG-TTCTATGTGTATTAATATACA------TGT-GT--CATTTCCTACTCGCAACTCTTCCTCC-GGATTTTTTTGATCATTACG-A--AGATATTATTTGTTTACG-AGGACGTTGTCTTTCGAAGCTGATCAGATCCCT--AT---T--CATTCGTCAA-TGCTACTGCGCTCT-----A-GATAAAGTAGATTTT---CAGACAACTTTGTTATC-TATTCTGATTGGATTATACCCTCTTTCCAA----TTC--AGTTCATAGG
gi|10 : TTTTAAAT-----TA-TG-A--CATGTTGAAGACAAAAAATTACTTGAC---GG-AAAGTGGAGGGGGGAGGCAAAAACAT-T--CTTTTG-CCCC-TCAg
gi|11 : CAGAAGCGTAGCGACTG-ATTTTGA-TAGGGGAG----GGG-----CAAACTccccaatttcaaattggcatgaatagtttgttctata
gi|12 : atgttataattgacagaatcaccatatttacgacttccccccccccccccctgcaaaaaaaccctcaggCATAGGCGTAG-AACTGTCTTT--AAATGGGGAG----GGGTGGGGCAAACATC-TAA-A-AATTGTG-ACAAGCAAAA--
gi|13 : ccccaaaaaaaccaaaGTGTAG-GACTGTTTTT----GAGGGGAG----GGG--------ACTTA-AAA-C-TGATGTG-ACAAGC-------CA-AAAAA-GG-T-AATTGAA----CACTA----------AT-------TG--TGT--GT-----TGGGGGG---aaccccaacaaaaacgtgttaaag
gi|14 : ac-ACTTCTAAAT-----TA-TG-TGACATGTTGCAGA------GTTACTTGAC---AA-AA---AGTGGGGGGAGGCAAAATCAT-A--CTTTT
gi|15 : a-GTTTACG-AAGGAGTTATC-AGCGA--CTGATCACATCTTTCCATATAT---ATC--TCAA-TG-TACTCTGCCTT-----A-GA-----------TT---t
gi|16 : AGGCGTAG-GACTGTTTTT--AAG-GGGGTG----GGG-G------ACTTC-TAA-A-TAATGTG-ACAAGC
gi|17 : TAGGCGTAG-CACTGTC-TTTGACAAGGGGGG----GGG-
gi|18 : ataattcct---TTCAAGGACA--GACATT-GCGTAAG-A-T-TG--CGG-----G--TTAC--
gi|2 : CATAGGCGTAG-GACTGTCCTTTGAAGAGGGGAG----GGG-GGAGCAAACTTC-TGC-G-TAATGCG-ACAAGCAAAA--TCA-AAAAA-GC-T-AATGGAA----CACTA----------AA-------TG--TGT--GTGTGCGTGGGGGG---GGG----GGGGGACTTAT----A-AATACCCGCGAC-------------A---------AGAAA----A-TAA--AGAACTGA--A-------GG-GGG-ACTTCTAAAT-----TA-TG-TGTC-TAATGCAGAAAAAAAGTTACTTGACAAGGG-GG---GGGGGGGGGGGGCTAAAACAT-A--CTATTG-ACTT-TCAATCCCTCCCCCCCCCCCCG--CT-C----T-A--CACCC-TG----ATTCCCCAATAC---GG-----------CCAGCATG-TTCAGT-CA-----ACA-TTACCAAAG---TTCAAGGACA--GACATA-GCGTAAG-ATT-TG--CGG-----C--TTAC--A-------------------T-CTTTCCA-CAC---GTTTC---G-GT-------TATA------TGT-AG--CATTTTCCAC--AGAAC-TTTCC--C-GA---TTTTTGATTG--ACG-AAGA-ATAT-ATT-GTTTACA-AAGGAGTTGTC-TGCGA--CTGATCAGATTTCTCCATACATCCCATTCGT----TG-TACTGTGCCTT-----ACGA-----------TT---CA-ACACGTTTG-T-TCATATTCTGATTta
gi|3 : ATAGGCGTAG-GGATGTCTTT-GAAGAAGGGAGATAGGGG-AAGGCAAACTTC-TAAAG-TAGTGCGCACATGCAAAAA-TCA-AAAAAAGC-T-TATGGAA----CACTA----------AATGATGTGTG--TGT--GTGTG-GTGACGCGCCAGGC----GGAGAACTTATA---A-AATAAT-GCGACAAAAACCAAATTTA---------AGAAGAGTAATTAG--AAAACTGA--A-------GG-GGA---TTCTAAAT-----TACTGTTGCCATGATGCAG-----AAGCCA---------------------GGGGGGGGCAAAAACATAA--CTATTGCATTTGTCCATCCCTCCTCTCCTCCCCC--CC-C----C-C--CACaactttctattcagtcatagg
gi|4 : tttaaactaagataaattttaggtgcggaacccggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacggagaataattcaG----GGGCAACTTAT----ATAATAAT-GCGAC-------------A---------AAAAAGGCAA-TAA--AACACTGA--ATGGGGGTGG-GGGCGCTTCTCAAT-----TA-TG-TGTCATGATGCAGAAAAAAAGTAACTTGAC---GG---------GGGGGAGGGCAAAAACAT-A--CTTTTG-ACTT-TCAATCCC---------CCTCGGACT-C----TTA--CACTCATG----ATT-TCCAATAC---AG-----------CCAGCAAG-TTCAGT-GA-----CAA-TTATCATAA---TTCAAGGACA--TATATT-GCGTAAG-A-T-TG--CGG-----C--TTAC--AAAAT-ACA----AACCTCGT-CTTTTCA-CAC---G-TTC---G-GT-------TATA------TGT-AG--CATTTACCAC--AGAGCTTTTCCA-C-GAT--TTTTTGATTA--ACG-A--A----------GTTAAGG-AAGGAGTTGTC-AGTGA--CTGACCATA-CTCTCCAT
gi|5 : aCCCCCCCG--CGGCGTAAT-A--CACCCATG----ATT-CCCAATAT---GA-----------CCAGCACG-TTCAGCACAATT--ACATTTACCAAAG----TCAAGAACA--GACATT-GCGTAAG-A---TG--CGG-----CTTTTACCAAAATTAACA----ATCCCCGT-CTTTCCACCAC---G-CTC---G----------TATAAATAATTGTCAGCCCATTTTCCAC--GAAACTTTCCC--CGGA---TTTTT-ATGA--ACGAA--A-ATAT-ATT-GTTTACGCAAGGAG-TGT--TGCGC--CTGAT--------TCCAGACGC--CATTCGTTAACTG-TACTGCGCCCCTCACAACGA-----------CTTCCCA-ACCAGTTTGTT---ATATTCT-----GATTATACCTTTT-----ACAATTTCAAAG-TCATAGGt
gi|6 : ATAGGCGTAG-GACTGT-TTTTG-AGAAAGGGG----GGG-GGGGCAAACTTC-TA-----AATG-G-GCAAGCAAA-----A-AAAAG-GCAC-AATAG-A----CAC-------------A-------TG--T-T--TTTTG-ACGGGGAG---GGG----
gi|6 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaAAAA--TACTTGAC---AATAA---GTGGGGGGAGGGGATAAACAT-G--CTTTTG-CC----CACTCCCTtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgaaaatacttgacaataagtggggggaggggataaacatgcttttgcccactcccttt
gi|8 : tgttaagtggaaatcaatacagttattctactttgacccccctccccccaaaaaagaaaccaataggcgtaggactgtttttgagaaagggggggggggcaaacttctaaatgggcaagcaaaaaaaaggcacaatagacacatgttttttgacggggaggggtgacggttgttcgttacttcaatatgcgttggcagcggggaaaaggggtaggggggcggcacataggacccgtttttgtaaactacgaggctagttaattattatagttgAACTTC-AAA-AATAATGCG-ATACG-AATA--T-A-GAAAA-GG-T-AATACAA----CACTG----------AA-------------------------GAGGG---GAG----GGAAAACTTCT----A-AA-AAT------------------------------------CAA-TAG--ATG--TGG--G-------GGAGGG-GCTTCTAAATTACGGTA-TG-TGTCATGAtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTAAACTAATGATAAATTTTAGGTGCGAGCCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATAATT
Unaligned ( gi|9 ): TTCTAAACTATTGATAAATTTTAGTGCGAACCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATA