lowQualScore : 11111
lowQualScore : 00000 555555 111111111 1 11 7777777777777777777777777777 111 111111111111 4444444444444444 555555 1 111 55555555555555555555555555555555555555 222222222222222222 1111 44444444444444444 666666 1 222222222222222 1 22222222 22222 11111111111 22222222222222222222222 1111111111111111 1111111111111 3333333333333333 111111111111 22222222222222 11 111 222 1 1 1 11 1
lowQualScore : 6 6 6 00000 4 777777 999999999 3 1 33 9999999999999999999999999999 6 3 3 000 0 666 44 3 3 77777 3 3 888888888888 44 4444 2 2 6666666666666666 3 3 666666 5 1 222 3 3 3 3 3 1 6 66666666666666666666666666666666666666 33 2 2 222222222222222222 2 66 2 444 33 2 2 2 22 2 4 2 666 1 1 3 3 333 2 2 44 2222 2 77777 555 8888888888 44 2 77777777777777777 2 2 2 000000 4 2 999 2 2 2 2 2 5 33 999 2 33 2 555555555555555 2 33 2 11111111 2 22 2 5 5555 1 44444 8 444 33 2 4 2 22 3 44 1 00000000000 1 9 77777777777777777777777 2 2 3333333333333333 44 2 22 7777777777777 444 2 5 2 2 2 555 2 444 5 4444444444444444 2 6666 33 444444444444 55555 2 88 0 33 5555 2 22222222222222 33 22 5 555 2 333 4444 00 0 3 5 55 0 3 0 666 1 5 5 55 0 99 666 0 0 0 0 3 1 0 88 3 3
lowQualScore : . . . ..... . ...... ......... . . .. ............................ . . . ... . ... .. . . ..... . . ............ .. .... . . ................ . . ...... . . ... . . . . . . . ...................................... .. . . .................. . .. . ... .. . . . .. . . . ... . . . . ... . . .. .... . ..... ... .......... .. . ................. . . . ...... . . ... . . . . . . .. ... . .. . ............... . .. . ........ . .. . . .... . ..... . ... .. . . . .. . .. . ........... . . ....................... . . ................ .. . .. ............. ... . . . . . ... . ... . ................ . .... .. ............ ..... . .. . .. .... . .............. .. .. . ... . ... .... .. . . . .. . . . ... . . . .. . .. ... . . . . . . . .. . .
lowQualScore : 0 0 0 00000 0 555555 333333333 3 0 88 3333333333333333333333333333 7 7 0 000 7 444 66 3 3 66666 1 1 999999999999 22 0000 9 9 1111111111111111 3 3 333333 0 4 555 3 3 1 3 3 0 7 88888888888888888888888888888888888888 99 9 5 666666666666666666 7 00 9 777 77 1 1 0 88 0 2 1 222 9 9 6 8 555 0 0 88 9999 1 44444 999 8888888888 88 0 22222222222222222 4 4 5 666666 4 7 444 5 5 4 5 5 0 44 111 7 99 9 555555555555555 5 44 5 22222222 7 88 5 3 7777 1 66666 6 777 77 1 2 0 88 6 88 8 55555555555 8 1 33333333333333333333333 2 2 9999999999999999 88 0 88 3333333333333 111 5 0 5 7 9 000 7 777 3 8888888888888888 7 8888 77 555555555555 99999 7 99 8 77 7777 4 44444444444444 44 66 3 000 9 888 2222 44 7 1 3 00 4 5 8 444 4 7 0 77 7 22 222 2 2 0 0 3 0 7 33 7 3
consensus : TGATGTTTTTTATTACTATTTTTNTACCACCCTGCN-TAANAA-GCGGG-CGTATT--ATGC-----TGCGCTGC-C--CGTC------TGTC-CGTCTGTCCCT---TTCA---CTTTGT--CTTC-GC-A---ACTCCTCCTAAA-CC-CT------TG----GGGGGA--TTTTG--A-T-GAAACT-----T----T---TGGTACAAA-GAA-AGA--AT-CACAATGTGGAGATG---TGC-A-T-A-T-TGCA-AGGGGA-G-A-TGCT---GT-CCGA-T--G------TTT-TTTAAA--GGAGT-TANGGCCCTTGGA---C-TT---AG--GA--TTTT-CTA-T-GCAA---A--ATA-C-T-T--T-GTC-TT-C--GCAACT-CCT-CCTAA-A-C---C-C-T--T--G-G-GG-----GA--TTTTG----------A--T-GAAACT-----T-----T---TGGTA-C-AAAGAA-AGA--AT-CACAATGTGG-AGATG---TGC-A-T-A-T-TGCA-AGGGG--A-A-T-GCT--GT-CCGA--N--G------TTTTTTAAA--GG-AGTTN---TG-GGC-CC-TTGG-A----CTTAGGA---TTTTTTA-TGCAA---A--ATA-C-T-T--TGTC-TT-CGC-AACT-----------CCT-CCT-AA---CC---T-----T--G----NGG-G-GA-TTTTG----------A--T-GAAACT--T-G---G-------TAC---AAA-GAAAGATCA-CA-ATGT-GG-A---GAT-G---TGC-AT-A-T--T--A-C-A--G-GGAA---TGCTG--T-CCAA-T-G--TTTTTT--AA-AGGAGT-TACGGCCCTTGG--A----CTT-A---G---G----TTT--T-CTA-TGCAA---AATA-C-T-T--T-GTC--TTCGCAACT-CCTCCTNAAC-CCCTAACTCGATCCGATGTT-TTTAAAGGAGTTANGGCCCTT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CCGGTTT--GGCGG-TGCCCTATTTT
Reference ( gi|1 ) : TGGTGTTCTCTAG----ATTTTTATAC------GCA-TAAAAA-GCGGG-CATATT--ATGC-----TATACTGT-C--CGTC------CGTC-CGTCTGTCCCT---TTCA---CTTTGT--CTTC-GC-A---ATTCCTCCTAAA-CC-CT------TG----GGGGGA--TTTTG--A-T-GAAACT-----TTA--T---TGGTACAAA-GAA-AGAGCATGCACACTGTGGAGATG---TGC-A-T-A-T-TGCA-AGGGGA-GTA-TACT---CT-CTGA-T--G------TTT-TTGGAA--GGAGT-TAGGGCCCTTGGA---A-TT---AG--GA--TTTT-CTG-T-GCAA---A--ATA-C-T-T--T-GTC-TT-C--ACAACT-CCT-CCTAA-A-C---C-C-T--T--G-G-GG-----GA--TTTTG----------A--T-GAAACT-----T-TA--T---TGGTA-C-AAAGAA-AGAGCATGCACACTGTGG-AGATG---TGC-A-T-A-T-TGCA-AGGGG--A-G-T-GCT--GT-CCGA--A--G------TTTTTTGAA--GG-AATTT---TG-GGC-CC-TTGG-A----CTTAGAA---TTTTTTA-TGCAA---A--ATA-C-T-T--TGTC-TT-TGC-AACT-----------CCT-CCT-AA---CC---T-----T--G----AGG-G-GATTTTTG----------A--T-GAAACT--T-A---A-------TAC---AAA-GAAAGATCA-CA-ATGT-GG-A---GAT-G---TGC-AT-A-T--T--A-C-A--G-GGAA---TGCTG--T-CCGA-T-G--TTTTTT--AA-AGGAGT-TAGAGCCCTTGG--A----CTT-A---G---G----TTT--T-CTA-TGCAA---AATA-C-T-T--T-GTC--TTCGCAACT-CCTCCTTAAT-CCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTT
gi|6 : TGATGTTTTTTATTACTATTTTTTTAT------GCT-CCAGCC-GGAGG-CATATA--GTGT-----TGCACT------TGTC------TGTC-CTTTTGTACTT---CCCAATACTTTGT--CTCC-GG-G---ACTCCTATTAAA-CA-GT------T-----TGAGGA--TTTCA--T-T-GAAAC-----------T---TGGTACAGT-GAA-AGATTAT-CACA-TGT--AGAT----TGG-A-T-G-T-GGGA-AGGGGA---A-AGCT---GT-TTAACT--G------TT-----ACA--GGAAT-TATGGCCCCTGGA---C-TT----C--GA--TTTT-TTG-T-GAAAGGCA--GTATC-A-TCAT-GCC-TT-T--GCAAAT-CCT-C--GA-G-T---A-C-TG-T--C-G-AA-----AA--TTTCA----------A--T-GAAAC------------T---TGGTA-C-
gi|3 : TTTTTATACCACCCTGCAATAAAAA-GCGGGGCGTATTTAATGCGTACCTGCGCTGT-CGTCGTCTGATCTCGTCTCATCTGTCCCTCTATTCA---CTTTGT--TCTT-GC-A---ACTCCTCCTAAA-CC-CT------TG----GAGGGAACTTTTG--ATT-GAAACT-----TAA--CGAGTAGTACGAA-AAACAAAGAA--CCCAATGTGGCGATG---TGCGA-TGA-T-TG-A-AGGGGA-G---TGCT---GT-TCGA-TC-T------TTT-TTTAAA--GGAGT-TAGGG-CCTTGG----A-CT---AG--GAC-TTTT-CTATT-GC-A---A--ATA-CTT-T--T-GTCATT-C--GCAACT-CCC-CTTAA-A-
gi|9 : -TAATAATGCGGG-CGTATT--ATGC-----TTTACC--------TC------TGTT-TGTCTGTCCCT---TTCA---CATTGT--CTTC-AC-A---ACT-CTCCTAAA-CC-CT------GGGGGAGGGGGA--TTTTG--A-T-GAAAC-----------T---TGATACAAA-GAA-AG---AT-CACAATGTGGACATT---TGC-A-T-A-T-TACA-AGGGGG-ATA-ggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|2 : T--ATAC-----TA--CTGCGC--TGTC-------GTC-CTTCTGT-CCT---TTAA---ATTTGCAACTCG-AC-ACCCCCCCCCCCTAAA-CC-CA------TG----GGGGGA--TTTT---A-T-GAACC-----------T---CGGTACAAA-GAA-AG----TTCACAATGTGTAGATG---TAC-A-T-A-T-TGCA-TGGGGA---A-TGCT---GT-CCAG-T--G------TTT-TTTAAA--GGAGT-TATGGTCTTTGGG---T-TT---AG--CG--TATT-TTA-T-GCAG---A--ATA-C-T-T-----TCATT-T--GCAACT-CCT-CCTAA-A-C---C-C-T--TC-A-G-GG-----GA--TATTA----------A--T-GAAAC------------T---CGATA-C-AAAGAA-AG---AT-CACAATGTGG-AGATG---TGC-A-T---T-TGCA-AGGGG--A-A-T-GCT--GT-CCAA--T--G-------TTTTTAAA--GG-AGTTc
gi|18 : TC------TGTC-CGTCTATCCCA---TTCA---CTTTGT--CTTC-GC-A---ACTCCTCCTAAA-CC-CT------TA----GGGGGA--ATTTG--A-T-GAAACT-----Tacagccataattgtcttgaactccttctaaacccttagggagaatttaatgaaacgtggtacaaagaaagatcacaatgtgtagatgtgcatattgtgaggggaactgtattacttttttagcaagttgtaatccattgacttagattttttttaataagtcatcaattcccagctggattcttaaaccgttacccgaagtggtatcatttaagttccttaggttccaataatgtgatgtgggtgtattcatggtagccggttttgggtggttgccctattt
gi|17 : TC-CATCTGTTCCT---TTCA---CT---------------------CCTCCTAAA-CC-CT------T-------GGGA--TTTGG--A-T-TAAA---------G--T---TGGTACAAA-GAA-AG---AT-CACAATGTG
gi|8 : TCCCA---TT-A---TTTTTT--CGTT-GC-A---ACTCCTCTTTAA-CC-CT------TT----AGAAGA--CTTCA--A-T-GAAA-T-----TTA--------ATACAAT-TAA-A---TAT-CACAATATAGAGATG---TAC-A-T-G-T-GGGA-AGGGGA---A-GACT---TT-TCAA-C--C------TTTATT--AT--GGAGT-TATGGCCACTGG
gi|4 : A---CTTTGT--CTTC-AC-A---ACTCCTCCTAAA-CC-CT------TG----GGG-GA--TTTTG--A-T-GAAACT-----TTA--T---TGGTACAAA-GAA-AGAGCATGCACACTGTGGAGATG---TGC-A-T-A-T-TGCA-AGGGGA-G---TGCT---GT-CCGA-A--G------TTT-TTTGAA--GGAAT-TGGGCCCTTTGGA---C-TT---AG--AA--TTTT-TTA-T-GCAA---A--ATA-C-T-T--T-GTC-TT-T--GCAACT--CT-CCTAA-A-C---C-C-T--T--GAG-GG-----GAT-TTTTG----------A--T-GAAACT-----T-AA---------TA-C-AAAGAA-AG---AT-CACAATGTGG-AGATG---TGC-A-T-A-T-TACA-A-GGG--A-A-T-GCT--GT-CCGA--T--G------TTTTTTAAA--GG-AG-TT---AG-AGC-CC-TTGG-A----CTTAGGT---TTTTCTA-TGCAA---A--ATA-C-T-T--TGTC-TT-CGC-AACT-----------CCT-TCT-gtacttttttttt
gi|5 : tcattttaattacttatgaagttagggcttggataggaattttctgtgcaaaatA---CTGTGT--GTTCTGCCA---ACTGCTCCTGAA-CCGCT------TGT---GGAGGA--TTT-A--A-T-GAA-CT-----T---------GAAACAAAAGAA-AGA---T-CACAATGTGGAGGTG---TGC-A-T-A-G-TGCACAGAGGA---A-TGCT---GT-C-AA-T--G------GTT-TCTTAA--AGAGT-TACGGACATCTGA---C-TT---A---GC--TTTT-TAG-T-GCAA---A--ATA-G-TAT--T-GTC--T-C--ACAAC--CCT--CTAA-A-CTGGT-T-C--T--G-G-GG-----GA----ATG----------A--T-G-AACT-----T-----------GTATC-AAAGAA-AA---AT-CACAATGTGGTATATG---TGC-A-T-A-T-TTTT-TGGGA--A-T-T-G-T--GT-C--A--A--T------ATTTTTGAT--GACAATTTCTATG-GAT-TC-TTtaatccctaactcgatccgatgtttttaaaggaattaaggcccctgtgtcaataatatatgcgggcgtatcatgtactggcttggcggtgccctatttt
gi|12 : aaaggagttatggtccttggacttaggcctttttttatgcaaagcatA---CTTAGT--CTTT-GC-A---ACTCCTTCTAAA-CC-CTGGGGGGTG----GGGGGA--A---GGAA-T-GAAACT-----T---------GGTACAAA-GAA-CGATCAttctcaattagacttta
gi|20 : gccctttgatcaacttacaagatttttctatgcaaaatA---CTTTGT--CTTT-GC-A---ACTCCTCTTAAATTT-CA------TA----GGAGGT--TTTTcaat
gi|22 : tccatgggcttgctctattcaaaatTTTGT--CCTC-AC-A---ACTCCTCTTAAA-TC-TT------TA----GGGTGA--TTTTA--A-T-GAAACT-----T
gi|10 : AGA-CC-CT------TAT---GGGAGA--ATTTA--A-T-GAAAC-----------T---TGGTATAAA-GA----ATTAT-CACAATGTGTAGATGAACTGC-A-T-
gi|7 : TTTG--A-TAGAAACT-----TT--------GGTACAAA-GAA-AG---AT-CACAATATGTAAACT---TGC-A-T-A-T-TATA-AGGGGA-caattttttgtacgagttggaacctttcaactcttatgcaaaattccatgatttttataccccccgc
gi|11 : --A-T-GAAAATATTGATTAGCT---TGGTACAAA-GAA-AGA---T-CACAATGTGTAGATGG--TGC-AAT-AGT-TGTA-AGGGGATGT--TGCT---GTGCCGA-T--G------TTT-T---------A---TAGGGCCCTTGGA---C-TT---GG--GA---TTT-CTA-T-GGAG---A--ATA-actgtgtcaattttttctctgtgagttgtagatttgttatgcaaaatgccatggattattttccccgatatacatttattaaagcctctgggtccataatttgtgtaccggtttgggtgtgccctatttt
gi|3 : CACAATGTGGAGCTGA--TGC-A-T-A-TATGCAGAGGGGA-G-A-TGTT---GT-CCGA-C--GATTATTTTT-TTTAAA--GGAGT-TAGGGCCCTTGGA---ACTT---A---------CT-CTATT-GCAA---A--ATA-C-T-T--T-GTG-TTAC--GCAACTGCCTCCCTAATA-C---C-T-T--T--GTG-GA-----GA--TTTTG----------ACTT-GAAACT-----TCTA--G---TTATA-C-AGTAAG-AGACCA-GCA-ATTTGGG-AGATG---TGC-A-T-A-A-TGCC-AAGGA--A-G-
gi|15 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttaaaggtG---TGC-A-T-A-T-TACA-AGGGGG---A-TGCT---GT-CCAA-TTCT------TTT-TTTAAA--GGAGT-TGCAGCCCTTGAA---C-TT-------GC--TTTT-TTaatctgccttgtcgatat
gi|13 : -A-T-TGCA-AAGG-A-GCAATGCCGAGTT-CAAG-T--G------TTT-T---AA--GGAGTGCCGCGTCCTTGTA-----CT---AG--GA--TTT--ATG-TTACAA---A--AT--C-G-T--T-GTC-TT-G--GCAATC-CCC-TCTAACA-C---C-C-T--T--tctattc
gi|21 : A-T--G------TTT-TTA-AA--GGAGT-TACGGACCTTGAA---C-TT---AA--GA--TTTT-GTA-T-TCAA---A--AT--C-T-T--T-
gi|14 : cca------TTT-TT--AATCGGAAT-TAGGGCCTTGGGA---C-TT---AGCAGA--TTTT-CTG-C----A---A--ACA-C-T-T--TTGTC-TT-C--GCAACT---T-CCCAA-
gi|5 : aggagctgtcgatttttAA--GGAGT-TATGGTCCTTGGA---C-TT---AG--GCCTTTTT-TTA-T-GCAA---AGCATA-C-T-G--T-GTG-TT-CTGCCAACT-GCT-CCTGA-A-C---CGC-TTGT--G-G-AG-----GA---TTTA----------A--T-G-AAC------------T---TGAAA-CAAAAGAA-AG---AT-CACAATGTGG-AGGTG---TGC-A-T-A-G-TGCACAGAGG--A-A-T-GCT--GT-C--A--ATGG------TTTCTT-AA--AG-AGTTA---CG-GACATC-T--G-A----CTTAG-----CTTTTTAGTGCAA---A--ATA-G-TAT--TGTC--T-CAC-AAC------------CCT--CT-AA---AC---TGGTTCT--G----GGG-G-AA----TG----------A--T-G-AACT--T-GT--A-------T-C---AAA-GAAAAATCA-CA-ATGT-GGTA---TAT-G---TGC-AT-ATT--T--T-T-T--G-GGAA---TTGTG--T--CAA-T-A--TTTTTt
gi|4 : a--GAAGT-TAGGGC--TTGGA------T---AG--GAA-TTTT-CTG-T-GCAA---A--ATA-C-T-T--T-GTC-TT-C--ACAACT-CCT-CCTAA-A-C---C-C-T--T--G-G-GG-----GA--TTTTG----------A--T-GAAACT-----T-TA--T---TGGTA-C-AAAGAA-AGAGCATGCACACTGTGG-AGATG---TGC-A-T-A-T-TGCA-AGGGG--A-G-T-GCT--GT-CCGA--A--G------TTTTTTGAA--GG-AA--T---TG-GGC-CCTTTGG-A----CTTAGAA---TTTTTTA-TGCAA---A--ATA-C-T-T--TGTC-TT-TGC-AACT------------CT-CCT-AAAC-CC---T-----T--G----AGG-G-GATTTTTG----------A--T-GAAACT--T-A---A-------TAC---AAA-GAAAGATCA-CA-ATGT-GG-A---GAT-G---TGC-AT-A-T--T--A-CAA--G-GGAA---TGCTG--T-CCGA-T-G--TTTTTT--AA-AGGAGT-TAGAGCCCTTGG--A----CTT-A---G---GT---TTT--T-CTA-TGCAA---AATA-C-T-T--T-GTC--TTCGCAACT-CCTTCTTAAT-CCCTAACTCGATCCGATGTT-TTTAAAGGAATTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTTgatgacaatttctatggattcttttctcaattagacttta
gi|12 : tcattttaattacttatGCCCTTTGATCAA-CTTACAA--GA--TTTTTCTA-T-GCAA---A--ATA-C-T-T--A-GTC-TT-T--GCAACT-CCT-TCTAA-A-C---C-C-T--G--G-G-GG-----G------TGGGGGGAAGGAA--T-GAAACT-----T----------GGTA-C-AAAGAA-CGATCA
gi|20 : T-CTA-T-TCAA---A--ATA-C-T-T--T-GTC-TT-T--GCAACT-CCT-CTTAA-ATT---T-C-A--T--A-G-GA-----GG--TTTTcaat
gi|6 : tccatgggcttgc---A--ATA-C-T-T--T-GTC-TC-C--GGGACT-CCT-ATTAA-A-C---A-G-T--T--T-G-AG-----GA--TTTCA----------T--T-GAAAC------------T---TGGTA-C-AGTGAA-AGATTAT-CACA-TGT---AGAT----TGG-A-T-G-T-GGGA-AGGGG--A-A-A-GCT--GT-TTAA-------------CTGTTACA--GG-AATTA---T--GGC-CC-CTGG-A----CTTCG-A---TTTTTTG-TGAAAGGCA--GTATC-A-TCATGCC-TT-TGC-AAAT-----------CCT--CG-AG---TA---C-----T--G----TCG-A-AAATTTCA----------A--T-GAAACT--T-G---G-------TAC---t
gi|8 : tgatgttttttattactatttttttatgctccagccggaggcatatagtgttgcacttgtctgtccttttgtacttcccTA-T-T-T--T-TTC-GT-T--GCAACT-CCT-CTTTA-A-C---C-C-T--TT-A-G-AA-----GA--CTTCA----------A--T-GAAA-T-----T-TA--------ATA-C-AATTAA-A---TAT-CACAATATAG-AGATG---TAC-A-T-G-T-GGGA-AGGGG--A-A-G-ACT--TT-TC-A--A--C------CTTTATTAT--GG-AGTTA---TG-GCC-AC-TGGGTA----CTT-------TTTTTT
gi|3 : tcccatA-C-T-T--T-GTT-CT-T--GCAACT-CCT-CCTAA-A-C---C-C-T--T--G-GAGG-----GAACTTTTG----------AT-T-GAAACT-----T-AA--CGAGTAGTA-C-GAAAAACAAAGAA--CCCAATGTGG-CGATG---TGCGA-TGA-T-TG-A-AGGGG--A-G-T-GCT--GT-TCGA--T--C------TTTTTTTAA--AG-GAGTT---AG-GG--CC-TTGG-A----CTAGGAC---TTTTCTATTGC-A---A--ATA-CTT-T--TGTCATT-CGC-AACT-----------CCC-CTT-AA---t
gi|9 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcA-C-A-T--T-GTC-TT-C--ACAACT-C-T-CCTAA-A-C---C-C-T--G--G-G-GGAGGGGGA--TTTTG----------A--T-GAAACT-----T----------GATA-C-AAAGAA-AGA---T-CACAATGTGG-ACATT---TGC-A-T-A-T-TACA-AGGGG--G-A-T-ACaggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|18 : taataatgcgggcgtattatgctttacctctgtttgtctgtccctttcA-C-T-T--T-GTC-TT-C--GCAACT-CCT-CCTAA-A-C---C-C-T--TA-G-G-GG-----GA--ATTTG----------A--T-GAAACT-----T-
gi|22 : tctgtccgtctatcccattc-T-T--T-GTC-CT-C--ACAACT-CCT-CTTAA-A-T---C-T-T--T--A-G-GGT----GA--TTTTA----------A--T-GAAACT-----T-
gi|16 : -T--T-GTC-AT-C--GCAACT-CCT-CTTCA-ATC---C-T-T--T--T-G-AG-----GA--TTTCA----------A--T-GAAATT-----T-
gi|17 : tgttgttgtaaggcagtatcataACT-CCT-CCTAA-A-C---C-C-T--T------GG-----GA--TTTGG----------A--T-TAAA----------G--T---TGGTA-C-AAAGAA-AG---AT-CACAATGTGggta
gi|2 : tccatctgttcctttcCC-CCC-CCTAA-A-C---C-CAT--G--G-G-GG-----GA--TTTT-----------A--T-GAACCT-----C----------GGTA-C-AAAGAA-AG----TTCACAATGTGT-AGATG---TAC-A-T-A-T-TGCA-TGGGG--A-A-T-GCT--GT-CCAG--T--G------TTTTTTAAA--GG-AGTTA---TG-G-T-CT-TTGG-G----TTTAGCG---TATTTTA-TGCAG---A--ATA-C-T-T--T--CATT-TGC-AACT-----------CCT-CCT-AAAC-CC---T-----T--C----AGG-G-GATATT-A----------A--T-GAAACT--C-G---A-------TAC---AAA-GAAAGATCA-CA-ATGT-GG-A---GAT-G---TGC-AT---T--T--G-C-AAGG-GGAA---TGCTG--T-CCAA-T-G---TTTTT--AA-AGGAGT-TACAGCC
gi|10 : tatactactgcgctgtcgtccttctgtcctttaaatttgcaactcgacaccccAG-A-C---C-C-T--TATG-G-GA-----GA--ATTTA----------A--T-GAAAC------------T---TGGTA-T-AAAGA----ATTAT-CACAATGTGT-AGATGAACTGC-A-T-ataattgtcttgaactccttctaaacccttagggagaatttaatgaaacgtggtacaaagaaagatcacaatgtgtagatgtgcatattgtgaggggaactgtattacttttttagcaagttgtaatccattgacttagattttttttaataagtcatcaattcccagctggattcttaaaccgttacccgaagtggtatcatttaagttccttaggttccaataatgtgatgtgggtgtattcatggtagccggttttgggtggttgccctattt
gi|7 : TTTG----------A--TAGAAACT-----T-T--------GGTA-C-AAAGAA-AG---AT-CACAATATGT-AAACT---TGC-A-T-A-T-TATA-AGGGG--A-ACT-G-T--GT-C-----A--A------TTTTTT---------CTCTG--TG-AG-----TTG---------TAG-A---TTTGTTA-TGCAA---A--ATG-C-caattttttgtacgagttggaacctttcaactcttatgcaaaattccatgatttttataccccccgc
gi|11 : ----------A--T-GAAAATATTGAT-TAGCT---TGGTA-C-AAAGAA-AGA---T-CACAATGTGT-AGATGG--TGC-AAT-AGT-TGTA-AGGGG--ATG-TTGCT--GTGCCGA--T--G------TTTTATA----------------G-GGC-CC-TTGG-A----CTTGGGA----TTTCTA-TGGAG---A--ATA-catggattattttccccgatatacatttattaaagcctctgggtccataatttgtgtaccggtttgggtgtgccctatttt
gi|3 : CACAATGTGG-AGCTGA--TGC-A-T-A-TATGCAGAGGGG--A-GAT-GTT--GT-CCGA--C--GATTATTTTTTTTAAA--GG-AGTTA----G-GGC-CC-TTGGAA----CTTA--------CTCTATTGCAA---A--ATA-C-T-T--TGTG-TTACGC-AACTG----------CCTCCCT-AATACCT---T-----T--G----TGG-A-GA-TTTTG----------ACTT-GAAACTTCT-AGTTA-------TAC---AGT-AAGAGACCAGCA-ATTTGGG-A---GAT-G---TGC-AT-A-A--T--GCC-A--A-GGAA---
gi|15 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttaaaggtG---TGC-A-T-A-T-TACA-AGGGG--G-A-T-GCT--GT-CCAATTC--T------TTTTTTAAA--GG-AG--T---TGCAGC-CC-TTGA-A----CTT-GCT---TTTTTTgaatctgccttgtcgatat
gi|13 : -A-T-TGCA-AAGGAGCA-A-T-GCCGAGT-TC-A--A--G------TGTTTT-AA--GG-AGTGC---CG-CGT-CC-TTGT-A----C-TAGGA---TTTATGT-TACAA---A--AT--C-G-T--TGTC-TT-GGC-AATC-----------CCC-TCT-AA---Cctattc
gi|14 : ------TTTTTTTAATCGG-AATTA----G-GGC-CT-TGGG-A----CTTAGCA---GATTTTC-TGC-A---A--ACA-CTT-T--TGTC-TT-CGC-AACT-------------T-CCC-AA---accctt
gi|5 : aggagctgtcgatttAA--GG-AGTTA---TG-G-T-CC-TTGG-A----CTTAGGCCT-TTTTTTA-TGCAA---AGCATA-C-T-G--TGTG-TTCTGCCAACT-----------GCT-CCTGAA---CCGC-T-----T--G----TGGAG-GATTT--A----------A--T-GAA-CT--T-G---A-------AAC---AAAAGAAAGATCA-CA-ATGT-GG-A---GGT-G---TGC-AT-A-G--TGCA-C-A--GAGGAA---TGCTG--T--CAA-TGG--TTTCTT--AA-A-GAGT-TACGGACATCTG--A----CTT-A---G---C----TTT--T-TAG-TGCAA---AATA-G-TAT--T-GTC---TCACAAC--CCTCt
gi|12 : aGC-CC-TTTG-ATCAACTTACAAGATTTTTCTA-TGCAA---A--ATA-C-T-T--AGTC-TT-TGC-AACT-----------CCT-TCTAAA---CC---C-----T--G----GGG-G-G-----TGGGGGGAAGGAA--T-GAAACT--T-G---G-------TAC---AAA-GAACGATCA-CA-ATtaaactggttctgggggaatgatgaacttgtatcaaagaaaaatcacaatgtggtatatgtgcatattttttgggaattgtgtcaatatttttgatgacaatttctatggattcttttctcaattagacttta
gi|20 : TCTA-TTCAA---A--ATA-C-T-T--TGTC-TT-TGC-AACT-----------CCT-CTT-AA---AT---T-----TCAT----AGG-A-GGTTTTT
gi|6 : tccatgggcttgc---A--ATA-C-T-T--TGTC-TC-CGG-GACT-----------CCT-ATT-AA---ACAGTT-----T--G----AGG-A----TTTCA----------T--T-GAAACT--T-G---G-------TAC---AGT-GAAAGATTATCACATGT-AG-ATTGGAT-G---TGG-G----------A-A-G--G-GGAA---AGCTG--T-TTAACT-G------TT--AC-AGGAAT-TATGGCCCCTGG--A----CTT-C---G---A----TTT--T-TTG-TGAAAGGCAGTATC-A-TCAT-GCC--TTTGCAAAT-CCTC
gi|8 : tgatgttttttattactatttttttatgctccagccggaggcatatagtgttgcacttgtctgtccttttgtacttcccTA-T-T-T--TTTC-GT-TGC-AACT-----------CCT-CTTTAA---CCC--T-----T--T----AGA-A-GACTTC-A----------A--T-GAAATT--T-A---A-------TAC---AAT-TAAATATCA-CA-ATAT-AG-A---GAT-G---TAC-AT-G-TGGG--A-A-G--G-GGAA---GACTT--T-TCAA-C-C--TTTATT---A-TGGAGT-TATGGCCACTGGGTA----CTT--------------TTT--T-TTgagtactgtcgaaaatttcaatgaaacttggtac
gi|3 : tcccatA-C-T-T--TGTT-CT-TGC-AACT-----------CCT-CCT-AAAC-CC---T-----TG-G----AGG-G-AACTTTTG----------AT-T-GAAACT--T-A---ACGAGTAGTACGAAAAA-CAAAGAACC-CA-ATGT-GG-C---GAT-G---TGCGATGA-T--TG-A-A-G--G-GGAG---TGCTG--T-TCGA-TCT--TTTTTT--AA-AGGAGT-TAGGG-CCTTGG--A----C-T-A---G---GAC--TTT--T-CTATTGC-A---AATA-CTT-T--T-GTCA-TTCGCAACT-CC-CCTTAAt
gi|9 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcA-C-A-T--TGTC-TT-CAC-AACT-----------C-T-CCT-AAA--CC---C-----T--GGGGGAGG-G-GGATTTTG----------A--T-GAAACT--T-G---A-------TAC---AAA-GAAAGATCA-CA-ATGT-GG-A---CAT-T---TGC-AT-A-T--T--A-C-AAGG-GGGA---TACaggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|18 : taataatgcgggcgtattatgctttacctctgtttgtctgtccctttcA-C-T-T--TGTC-TT-CGC-AACT-----------CCT-CCT-AAAC-CC---T-----T--A----GGG-G-GA-ATTTG----------A--T-GAAACT--T-
gi|22 : tctgtccgtctatcccattc-T-T--TGTC-CT-CAC-AACT-----------CCT-CTTAAA---TC---T-----T--T----AGG-GTGA-TTTTA----------A--T-GAAACT--T-
gi|2 : -T--TGTC-TT--G--AACT-----------CCT-TCT-AAAC-CC---T-----T--A----GGG-A-GAATTT-A----------A--T-GAAACG--T-G---G-------TAC---AAA-GAAAGATCA-CA-ATGT-GT-A---GAT-G---TGC-AT-A-T--T--G-TGA--G-GGGA----ACTG--T-AT---T-A--CTTTTT--TA-GCAAGT-TGTAATCCATTG--A----CTT-A---G---A----TTT--T-TTT-T-------AATA-A-G-T--C-ATCAATTCCCAGCTGGATTCTTAAA-CCGTTACCCGAAGTGGTATCATTTA----AGTT-----CCTTAGGTTCCAATAATGTGATGTGGGTGTATTCATGGTAGCCGGTTTTGGGTGGTTGCCCTATTT
gi|16 : tatactactgcgctgtcgtccttctgtcctttaaatttgcaactcgacaccccccccccctaaacccatggggggattttatgaacctcggtacaaagaaagttcacaatgtgtagatgtacatattgcatggggaatgctgtccagtgttttttaaaggagttatggtctttgggtttagcgtattttatgcagaatactttcatttgcaactcctcctaaacccttcaggggatattaatgaaactcgatacaaagaaagatcacaatgtggagatgtgcatttgcaaggggaatgctgtccaatgtttttaaaggagttacagccataa-T--TGTC-AT-CGC-AACT-----------CCT-CTTCAAT--CC---T-----T--T----TGA-G-GA-TTTCA----------A--T-GAAATT--T-G---G-------TA
gi|17 : tgttgttgtaaggcagtatcataTC-CT-TTC-A-CT-----------CCT-CCT-AAAC-CC---T-----T--G--------G-GATTTG-G----------A--T-TAAAGT--T-G---G-------TAC---AAA-GAAAGATCA-CA-ATGT-G
gi|2 : tccatctgt-TT-TGC-AACTCGACACCCCCCCCC-CCT-AAAC-CC---A-----T--G----GGG-G-GATTTT------------A--T-GAACCT--C-G---G-------TAC---AAA-GAAAGTTCA-CA-ATGT-GT-A---GAT-G---TAC-AT-A-T--T--G-C-ATGG-GGAA---TGCTG--T-CCAG-T-G--TTTTTT--AA-AGGAGT-TATGGTCTTTGG--G----TTT-A---GC--G----TAT--T-TTA-TGCAG---AATA-C-T-T-----TCA-TTTGCAACT-CCTCCTAAAC-CCTT
gi|7 : tatactactgcgctgtcgtccttctgtcctttaaaTTTG----------A--TAGAAACT--TTG---G-------TAC---AAA-GAAAGATCA-CA-ATAT-GT-A---AAC-T---TGC-AT-A-T--T--A-T-AAGG-GGAA-----CTG--TGTCAA-T-T--TTTTCT--CT-GTGAGT-TG-------------------T-A---G---A----TTT--G-TTA-TGCAA---AATG-C-C-A--T-GGA--TT----ATT-T--------T-CCC-----CGAT---ATACA-TTTA------TTAAAGCCTCT--GGGTCCATAAT---------------TTGT-GTA-CCGGTTT--GGGTG-TGCCCTATTTTcaggggatattaatgaaactcgatacaaagaaagatcacaatgtggagatgtgcatttgcaaggggaatgctgtccaatgtttttaaaggagttacagccataattgtcttgaactccttctaaacccttagggagaatttaatgaaacgtggtacaaagaaagatcacaatgtgtagatgtgcatattgtgaggggaactgtattacttttttagcaagttgtaatccattgacttagattttttttaataagtcatcaattcccagctggattcttaaaccgttacccgaagtggtatcatttaagttccttaggttccaataatgtgatgtgggtgtattcatggtagccggttttgggtggttgccctattt
gi|10 : TTTA----------A--T-GAAACT--T-G---G-------TAT---AAA-GAATTATCA-CA-ATGT-GT-A---GAT-GAACTGC-AT-----------C-A---------------------------A--TTTTTT--GT-ACGAGT-TGGAACCTTTCA--A----C------------------T--C-TTA-TGCAA---AAT
gi|11 : agacccttatgggagaaTTG----------A--T-TAG-CT--T-G---G-------TAC---AAA-GAAAGATCA-CA-ATGT-GT-A---GATGG---TGCAAT-AGT--T--G-TAA--G-GGGATGTTGCTG--TGCCGA-T-G----TTTT--A---------TAGGGCCCTTGG--A----CTT-G---G---G----ATT--T-CTA-TGGAG---AATA-tccatgatttttataccccccgc
gi|15 : atgaaaata-G---TGC-AT-A-T--T--A-C-AAGG-GGGA---TGCTG--T-CCAA-T-TCTTTTTTT--AA-AGGAGT-TGCAGCCCTTGA--A----CTT---------GCTTTTTT--T-CTA-T
gi|13 : AA---TGCCGAGT-TCAAGT-G--TTTT-----A-AGGAGTGCCGCGTCCTTGT--A----C-T-A---G---G----ATT--T-ATGTTACAA---AAT--C-G-T--T-GTC--TTGGCAA-T-CCCCTCTAACACCCTtc
gi|14 : attgcaaaggagcGCTG--T-C-GA-T-T--TTTTTTTTAATCGGAAT-TAGGGCCTTGGG--A----CTT-A---GCAGA----TTT--T-CT---GCAA---A-CA-C-T-T--TTGTC--TTCGCAACT-TCCCt
gi|21 : agga-CCAA-T-G--TTTT-T--AA-AGGAGT-TACGGACCTTGA--A----CTTAA---G---A----TTT--T-GTA-TTCAA---AAT--C-T-T--T-aat
gi|12 : GCCCTTTG--ATCAACTT-ACAAG---A----TTT--TTCTA-TGCAA---AATA-C-T-T--A-GTC--TTTGCAACT-CCTTCTAAAC-CC
gi|20 : T-G---G---G----CTTGCT-CTA-TTCAA---AATA-C-T-T--T-GTC--TTTGCAACT-CCTCTTAAAT-tggggggtggggggaaggaatgaaacttggtacaaagaacgatcacaat
gi|18 : tccaA-C-T-T--T-GTC--TTCGCAACT-CCTCCTAAAC-CCTTAttcataggaggttttt
gi|16 : tctgtccgtctatcccattc-T--T-GTC--ATCGCAACT-CCTCTTCAAT-CCTTgggggaatttgatgaaactt
gi|3 : tgttgttgtaaggcagtatcataTCGATC---TTTT-TTTAAAGGAGTTAGGGCCttgaggatttcaatgaaatttggta
gi|21 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgtCCAATGTT-TTTAAAGGAGTTACGGACCTT--Gttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttaaaggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|3 : TT-TTTAAAGGAGTTAGGGCCCTT--Gaacttaagattttgtattcaaaatcttt
gi|15 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttaaaggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattatttTT-TTTAAAGGAGTTGCAGCCCTT--Ggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|9 : gtgcatattacaagggggatgctgtccaattcttTAATA--ATGCGGGCGTA-TTAT-Gaacttgctttttttctattc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): ATTTCATGTTTTTATGCTCTCGCCATAAAATCGCATATAGTGATGTTACAGCCATACAGGGGGCACCTG
Alignments
lowQualScore : 22222 444444 11 1 1 11 22222 222222 111111 11111 2222222222 3333 1111111 111111111 11 1111 33333 333333 1 11 11 1111 1111 22 11111 222222222222 111 2222 11 111 22 1111 11 111 1111111111 11 2222 11 111 1 1 1 11 1
lowQualScore : 77777 1 888888 11 1 0 0 33 00000 3 1 777777 666666 5 1 777 777 55 1 0 777 66666 55 1 4 6666666666 777 1111 4 8 4 4 888 4 2 4 3333333 4 4 333333333 0 55 3 1 1 77 555 22 77 555 44 3 3 55 3 8 777 4 4 4 4 4 5 5 9999 77 11111 5 6 888888 6 6 5 5 5 77 0 77 7 1 2 6 00 6 33 4444 3333 6 8 0 5 1 7 0 4 5 33 44444 1 5 8 777777777777 5 55 5 99 000 6 7777 88 66 222 1 11 1 0 7777 8 2 0 33 55 444 1111111111 0 99 11 3333 0 888 2 33 444 0 0 0 0 0 33 0 0
lowQualScore : ..... . ...... .. . . . .. ..... . . ...... ...... . . ... ... .. . . ... ..... .. . . .......... ... .... . . . . ... . . . ....... . . ......... . .. . . . .. ... .. .. ... .. . . .. . . ... . . . . . . . .... .. ..... . . ...... . . . . . .. . .. . . . . .. . .. .... .... . . . . . . . . . .. ..... . . . ............ . .. . .. ... . .... .. .. ... . .. . . .... . . . .. .. ... .......... . .. .. .... . ... . .. ... . . . . . .. . .
lowQualScore : 00000 0 777777 00 0 0 0 88 00000 2 4 000000 444444 7 7 888 888 55 2 7 000 77777 55 4 0 9999999999 888 4444 0 9 4 4 777 4 9 4 9999999 0 0 888888888 8 00 6 0 0 99 555 33 55 888 66 3 6 00 6 0 888 0 0 0 0 4 0 0 0000 99 11111 7 7 333333 7 7 7 7 7 99 7 99 8 0 3 7 66 7 33 2222 8888 7 0 8 7 7 6 1 0 7 88 33333 0 7 9 999999999999 0 22 0 22 000 7 0000 33 00 888 0 00 0 8 0000 0 5 8 88 00 000 2222222222 8 00 22 5555 2 000 2 88 000 2 2 0 0 0 88 2 0
consensus : TGGTGTTCTCTANTACTATTTTTATAC-----TGCA-TAAAAA-GCGGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTC---ACTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-A-T-A-T-TGCA-AGGGG-A-G-ATGCTGT-CCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-GC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTT--TGG-TACAAA-GAAAGAG-AT-CA-CAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGANGTTTTTTGAAG-GAGTTNCGGGC-CCTT-GGA----CTTA--GGATTTTT-TA-TGCAAAATACT-TTGTCTTCGCAACTCCTCCT-AA--CCT-----TGGGGG-GATTTT-G----------AT-GAAACTT-GGTA-CAAAGAAAGATCACAATGTGN-AGATG---TGCATA-TTAC-AA-GGGAATGCTGT-CCGATN--TTTTTTAAAGGAGTTGNAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTCGTC--TTCGCAACT--CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
Reference ( family-164 ) : TGATGTTTTTTATTACTATTTTTNTACCACCCTGCN-TAANAA-GCGGG-CGTATT--ATGC-----TGCGCTGCC--CGTCTG------TC-CGTCTGTCCCT---TTC---ACTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-A-T-A-T-TGCA-AGGGG-A-G-ATGCTGT-CCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-GC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTT--TGG-TACAAA-GAAAGA--AT-CA-CAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGANGTTTTTTAAAG-GAGTTNTGGGC-CCTT-GGA----CTTA--GGATTTTT-TA-TGCAAAATACT-TTGTCTTCGCAACTCCTCCT-AA--CCT-----TGNGGG-GATTTT-G----------AT-GAAACTT-GGTA-CAAAGAAAGATCACAATGTGG-AGATG---TGCATA-TTAC-A--GGGAATGCTGT-CCAATG--TTTTTTAAAGGAGTTACGGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTTGTC--TTCGCAACT--CCTCCTNAACCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTANGGCCCTT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CCGGTTT--GGCGG-TGCCCTATTTT
gi|1 : TGGTGTTCTCTAG----ATTTTTATAC------GCA-TAAAAA-GCGGG-CATATT--ATGC-----TATACTGTC--CGTCCG------TC-CGTCTGTCCCT---TTC---ACTTTGT--CTTCGCAATTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----TATTGGTAC---AAAGAAAGAGCATGCACACTGTGGAGATG-TGC-A-T-A-T-TGCA-AGGGG-A-GTATACTCT-CTGA-T-G------TTTTTG--GA-AGGAGTTAGGGCCCTTGG--AATTAG--GA--TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-AC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTTATTGG-TACAAA-GAAAGAGCATGCA-CACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAAGTTTTTTGAAG-GAATTTTGGGC-CCTT-GGA----CTTA--GAATTTTT-TA-TGCAAAATACT-TTGTCTTTGCAACTCCTCCT-AA--CCT-----TGAGGG-GATTTTTG----------AT-GAAACTT-AATA-CAAAGAAAGATCACAATGTGG-AGATG---TGCATA-TTAC-A--GGGAATGCTGT-CCGATG--TTTTTTAAAGGAGTTAGAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTTGTC--TTCGCAACT--CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTT
gi|10 : --CCT-----TATGGGAGAATTT-A----------AT-GAAACTT-GGTA-TAAAGAATTATCACAATGTGT-AGATGAACTGCAT
gi|11 : agac-----T--TGGTAC---AAAGAAAGA---T-CACAATGTGTAGATGGTGC-AAT-AGT-TGTA-AGGGG-ATG-TTGCTGTGCCGA-T-G------TTTT----------A--TAGGGCCCTTGG--ACTTGG--GA---TTTCTA-TGGAG---A--ATA-caattttttgtacgagttggaacctttcaactcttatgcaaaattccatgatttttataccccccgc
gi|12 : atgaaaatattgattagcGC-CCTT-TGATCAACTTACAAGATTTTTCTA-TGCAAAATACT-TAGTCTTTGCAACTCCTTCT-AAA-CCC-----TGGGGG-G----T-GGGGGGAAGGAAT-GAAACTT-GGTA-CAAAGAACGATCACAAT
gi|13 : ATTG-CA-AAG-GAGCAATGCCGAGTTC-AAGTGTTTT-AAG-GAGTGCCGCGT-CCTT-GTA----C-TA--GGATTTAT-GT-TACAAAAT-CG-TTGTCTTGGCAATCCCCTCT-AA--C
gi|14 : GCTGT-C-GA-T-T------TTTTTTTTAATCGGAATTAGGGCCTTGGG--ACTTAGCAGA--TTTTCT---GCAA---A---CA-C-TT--TTGTC-TT-C-GC-AACT---T-CCCAA-accctt
gi|15 : aggaG---TGCATA-TTAC-AAGGGGGATGCTGT-CCAATTCTTTTTTTAAAGGAGTTGCAGCCCTTGAACTT--GCTTTTTTT-CTATt
gi|16 : -TTGTCATCGCAACTCCTCTTCAAT-CCT-----TTTGAG-GATTTC-A----------AT-GAAATTT-GGTA-tc
gi|17 : tgttgttgtaaggcagtatcata------TC-CATCTGTTCCT---TTC---ACT----------------CCTCC---TAAACCCTT-------GGGA--TTTGGA-TTAAA--G-----T--TGGTAC---AAAGAAAG---AT-CACAATGTG
gi|18 : TCTG------TC-CGTCTATCCCA---TTC---ACTTTGT--CTTCGCAACTCCTCC---TAAACCCTTA----GGGGGA--ATTTGA-TGAAACTT-----
gi|2 : TAC-----TGCGCTGTC-------G------TC-CTTCTGTCC-T---TTA---AATTTGCAACTCGACACCCCCCCCCCCTAAACCCATG----GGGGGA--TTTT-A-TGAACCTC---------GGTAC---AAAGAAAGT---T-CACAATGTGTAGATG-TAC-A-T-A-T-TGCA-TGGGG-A---ATGCTGT-CCAG-T-G------TTTTTT--AA-AGGAGTTATGGTCTTTGG--GTTTAG--CG--TATTTTA-TGCAG---A--ATA-C-TT-----TCATT-T-GC-AACT-CCT-CCTAA-A-CC-CT-TCA--GGGGATATTAA--TGAAAC--T--CGA-TACAAA-GAAAG---AT-CA-CAATGT-GGAGATGTGCAT-TTG-CA-AGG-GG--AATGCT--GTCCAATG-TTTTTAAAG-GAGTT
gi|2 : tatacCT---TTC---ATTT---------GCAACTCCTCC---TAAACCCTTC----AGGGGA--TATTAA-TGAAAC-------T--CGATAC---AAAGAAAG---AT-CACAATGTGGAGATG-TGC-A-T---T-TGCA-AGGGG-A---ATGCTGT-CCAA-T-G-------TTTTT--AA-AGGAGTTACAGCC----------------A--T---------------A--AT--------T-GTC-TT---G--AACT-CCT-TCTAA-A-CC-CT-TAG--GGAGAATTTAA--TGAAAC--G--TGG-TACAAA-GAAAG---AT-CA-CAATGT-GTAGATGTGCATATTG-TG-AGG-GG--AA--CT--GTATTAC-TTTTTT--AGCAAGTTGTAATC-CATT--GA----CTTA---GATTTTT-Tacagccataattgtcttgaactccttctaaacccttagggagaatttaatgaaacgtggtacaaagaaagatcacaatgtgtagatgtgcatattgtgaggggaactgtattacttttttagcaagttgtaatccattgacttagattttttttaataagtcatcaattcccagctggattcttaaaccgttacccgaagtggtatcatttaagttccttaggttccaataatgtgatgtgggtgtattcatggtagccggttttgggtggttgccctattt
gi|2 : tatactactgcgctgtcgtccttctgtcctttaaatttgcaactcgacaccccccccccctaaacccatggggggattttatgaacctcggtacaaagaaagttcacaatgtgtagatgtacatattgcatggggaatgctgtccagtgttttttaaaggagttatggtctttgggtttagcgtattttatgcagaata-TTGTCTT-G-AACTCCTTCT-AAACCCT-----TAGGGA-GAATTT-A----------AT-GAAACGT-GGTA-CAAAGAAAGATCACAATGTGT-AGATG---TGCATA-TTGTGA--GGGGA-ACTGT---ATTA--CTTTTTTAGCAAGTTGTAATCCATTGACTTAGA----TTTT-TTTT----AATAAGTCATCAATTCCCAGCTGGATTCTTAAACCGTT-ACCCGAAGTGGTATCATTTA----AGTT-----CCTTAGGTTCCAATAATGTGATGTGGGTGTATTCATGGTAGCCGGTTTTGGGTGGTTGCCCTATTTttaataagtcatcaattcccagctggattcttaaaccgttacccgaagtggtatcatttaagttccttaggttccaataatgtgatgtgggtgtattcatggtagccggttttgggtggttgccctattt
gi|20 : tatactactgcgctgtcgtccttctgtcctttaaatttgcaactcgacaccccccccccctaaacccatggggggattttatgaacctcggtacaaagaaagttcacaatgtgtagatgtacatattgcatggggaatgctgtccagtgttttttaaaggagttatggtctttgggtttagcgtattttatgcagaatactttcatttgcaactcctcctaaacccttcaggggatattaatgaaactcgatacaaagaaagatcacaatgtggagatgtgcatttgcaaggggaatgctgtccaatgtttttaaaggagttacagccataaTCTA-TTCAA---A--ATA-C-TT--T-GTC-TT-T-GC-AACT-CCT-CTTAA-ATTT-CA-T-A--GGAGGTTTT
gi|21 : tccatgggcttgc-CCAA-T-G------TTTT-T--AA-AGGAGTTACGGACCTTGA--ACTTAA--GA--TTTTGTA-TTCAA---A--AT--C-TT--T-t
gi|22 : TTTGT--CCTCACAACTCCTCT---TAAATCTTTA----GGGTGA--TTTTAA-TGAAACTT-----
gi|3 : TTTTTATACCACCCTGCAATAAAAA-GCGGGGCGTATTTAATGCGTACCTGCGCTGTCGTCGTCTGATCTCGTCTCATCTGTCCCTCTATTC---ACTTTGT--TCTTGCAACTCCTCC---TAAACCCTTG----GAGGGAACTTTTGATTGAAACTTAACGAG--TAGTACGAAAAACAAAGA--AC-C-CAATGTGGCGATG-TGCGA-TGA-T-TG-A-AGGGG-A-G--TGCTGT-TCGA-TCT------TTTTTT--AA-AGGAGTTAGGG-CCTTGG--AC-TAG--GAC-TTTTCTATTGC-A---A--ATA-CTTT--T-GTCATT-C-GC-AACT-CCC-CTTAA-A-
gi|3 : AAAGG---T-CACAATGTGGAGCTGATGC-A-T-A-TATGCAGAGGGG-A-G-ATGTTGT-CCGA-C-GATTATTTTTTTT--AA-AGGAGTTAGGGCCCTTGGA-ACTTA---------CTCTATTGCAA---A--ATA-C-TT--T-GTG-TTAC-GC-AACTGCCTCCCTAATA-CC-TT-T-GT-GGAGATTTTGACTTGAAACTTC--TAGTTATACA-GTAAGAG-AC-CAGCAATTTGGGAGATGTGCATAATGCCA-AGGAAG--AAT-CT--GCCggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|4 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttGAAGTTAGGGC--TTGG--A--TAG--GAA-TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-AC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTTATTGG-TACAAA-GAAAGAGCATGCA-CACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAAGTTTTTTGAAG-GAATT--GGGC-CCTTTGGA----CTTA--GAATTTTT-TA-TGCAAAATACT-TTGTCTTTGCAACTC-TCCT-AAACCCT-----TGAGGG-GATTTTTG----------AT-GAAACTT-AATA-CAAAGAAAGATCACAATGTGG-AGATG---TGCATA-TTAC-AA-GGGAATGCTGT-CCGATG--TTTTTTAAAGGAGTTAGAGCCCTTGGACTTAGG----TTTTTCTATGCAAAATACTTTGTC--TTCGCAACT--CCTTCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAATTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTTttgtcgatat
gi|5 : tcattttaattacttat--AA-AGGAGTTATGGTCCTTGG--ACTTAG--GCCTTTTTTTA-TGCAA---AGCATA-C-TG--T-GTG-TT-CTGCCAACT-GCT-CCTGA-A-CCGCT-T-GTGGAGGATTT-AA--TGAA---CT--TGA-AACAAAAGAAAGA---T-CA-CAATGT-GGAGGTGTGCATAGTG-CACAGA-GG--AATGCT--GTCAATGGTTTCTTAAA--GAGTTACGGACATCT---GA----CTTA--G--CTTTT-TAGTGCAAAATAGTATTGTC-TCACAAC-CCT-CT-AA--ACTGGTTCTGGGGG-AA---T-G----------AT-G-AACTT--GTATCAAAGAAAAATCACAATGTGGTATATG---TGCATATTTTT-T--GGGAATTGTGT--CAATA--TTTTT
gi|6 : TGATGTTTTTTATTACTATTTTTTTA------TGCT-CCAGCC-GGAGG-CATATA--GTGT-----TGCACT-----TGTCTG------TC-CTTTTGTACTT---CCCAATACTTTGT--CTCCGGGACTCCTAT---TAAACAGTT-----TGAGGA--TTTCAT-TGAAAC-------T--TGGTAC---AGTGAAAGATTAT-CAC-ATGT--AGAT--TGG-A-T-G-T-GGGA-AGGGG-A-A-A-GCTGT-TTAACT-G----------TT--AC-AGGAATTATGGCCCCTGG--ACTT-C--GA--TTTTTTG-TGAAAGGCA--GTATC-ATCAT-GCC-TT-T-GC-AAAT-CCT-C--GA-G-TA-CTGT-C--GAAAATTTCAA--TGAAAC--T--TGG-TACgatgacaatttctatggattcttttctcaattagacttta
gi|7 : TTT-G----------ATAGAAACTTTGGTA-CAAAGAAAGATCACAATATGT-AAACT---TGCATA-TTAT-AAGGGGAA--CTGTGTCAATT--TTTTCTCTGTGAGTTG-------------TAGA----TTTG-TTATGCAAAATGCCATGGA--TT----ATT--TTCCC-------------CGAT---ATACA-TTTA------TTAAAGCCTCT--GGGTCCATAAT---------------TTGT-GTA-CCGGTTT--GGGTG-TGCCCTATTTT
gi|8 : TCCCA---TT----ATTTTTT--CGTTGCAACTCCTCT---TTAACCCTTT----AGAAGA--CTTCAA-TGAAA--T-----T--TAATAC---AATTAAAT---AT-CACAATATAGAGATG-TAC-A-T-G-T-GGGA-AGGGGAA-G-A--CTTT-TCAA-C-C------TTTATT---A-TGGAGTTATGGCCACTGGGTACTT
gi|9 : -TAATAATGCGGG-CGTATT--ATGC-----T---TTACC----TCTG------TT-TGTCTGTCCCT---TTC---ACATTGT--CTTCACAACT-CTCC---TAAACCCTGGGGGAGGGGGA--TTTTGA-TGAAAC-------T--TGATAC---AAAGAAAG---AT-CACAATGTGGACATT-TGC-A-T-A-T-TACA-AGGGG---G-ATACttttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATTTCATGTTTTTATGCTCTCGCCATAAAATCGCATATAGTGATGTTACAGCCATACAGGGGGCACCTG
Alignments
lowQualScore : 22222 11 444444 11111111 111 1 11 22222 222 111111 11111 22222222222 3333 1 1111111 11111111 11 1111 22222 1111 111111111 1111 1111 1 1111111111 3333333333333333 111 11111 111111111 1111111 111 11111111 11 2222 11 111 1 1 1 11 1
lowQualScore : 55555 88 000000 44444444 777 0 33 00000 3 1 3 444 666666 5 1 888 777 55 1 777 44444 55 1 4 55555555555 888 1111 4 0 5 5 5 5 5 4 5 4444444 4 4 55555555 9999 4 1 88 55 33 7 666 55 3 4 55 4 8 4 4 4 4 4 4 5 5 5 7777 0 99 44444 6 55 7777 8 0 8 6 6 6 99 99 1 6 1 5 8 8 6 999999999 3 2222 1111 6 2 9 2 9999999999 6 3333333333333333 5 77 5 6 1 000 0 1 11111 444444444 55 6 7 2 3 5555555 6 9 666 66666666 66 99 11 3333 0 3 0 33 444 0 0 0 2 0 0 33 0 0
lowQualScore : ..... .. ...... ........ ... . .. ..... . . . ... ...... . . ... ... .. . ... ..... .. . . ........... ... .... . . . . . . . . . ....... . . ........ .... . . .. .. .. . ... .. . . .. . . . . . . . . . . . .... . .. ..... . .. .... . . . . . . .. .. . . . . . . . ......... . .... .... . . . . .......... . ................ . .. . . . ... . . ..... ......... .. . . . . ....... . . ... ........ .. .. .. .... . . . .. ... . . . . . . .. . .
lowQualScore : 00000 33 777777 88888888 555 0 88 00000 2 4 2 222 444444 7 7 888 888 55 4 000 22222 55 4 0 22222222222 888 4444 4 0 0 0 0 0 0 5 0 0000000 4 4 66666666 1111 0 0 66 55 55 3 444 00 6 0 55 0 9 4 4 4 4 4 4 0 7 7 4444 1 22 77777 7 88 0000 0 6 0 7 7 7 22 22 0 4 0 6 2 8 7 888888888 2 3333 8888 7 2 8 0 0000000000 7 4444444444444444 7 44 7 7 0 000 3 7 11111 000000000 22 7 5 5 2 2222222 7 2 222 55555555 88 00 22 5555 2 2 2 88 000 2 2 0 0 0 0 88 2 0
consensus : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-A-T-A-T-TGCA-AGGGG-A-G-ATGCTGT-CCGA-T-G------TTTTTT--AA-AGGAGTTAGGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-GC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTT--TGG-TACAAAGAAAGAGCATGCA-CAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGAAGTTTTTTGAAGGAGTTNCGGGC-CCTT-GGA----CTTA--GAATTTTT-TA-TGCAAAATACT-TTGTCTTCGCAACTCCTCCTAA--CCT-----TG-GGGGGA-TTT-G----------AT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGATG---TGCATATTACAAGGGG-ATGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
Reference ( family-164 ) : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-A-T-A-T-TGCA-AGGGG-A-G-ATGCTGT-CCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-GC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTT--TGG-TACAAAGAAAGAG-AT-CA-CAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGANGTTTTTTGAAGGAGTTNCGGGC-CCTT-GGA----CTTA--GGATTTTT-TA-TGCAAAATACT-TTGTCTTCGCAACTCCTCCTAA--CCT-----TG-GGGGGATTTT-G----------AT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GNAGATG---TGCATATTACAAGGGA-ATGCTGT-CCGATN--TTTTTTAAAG-GAGTTGNAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTCGTC--TTCGCAACT-CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
gi|1 : TGGTGTTCTCTAG----ATTTTT--ATAC------GCA-TAAAAA-GC---GGG-CATATT--ATGC-----TATACTGTC--CGTCCG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAATTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----TATTGGTAC---AAAGAAAGAGCATGCACACTGTGGAGATG-TGC-A-T-A-T-TGCA-AGGGG-A-GTATACTCT-CTGA-T-G------TTTTTG--GA-AGGAGTTAGGGCCCTTGG--AATTAG--GA--TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-AC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTTATTGG-TACAAAGAAAGAGCATGCA-CACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAAGTTTTTTGAAGGAATTTTGGGC-CCTT-GGA----CTTA--GAATTTTT-TA-TGCAAAATACT-TTGTCTTTGCAACTCCTCCTAA--CCT-----TG-AGGGGATTTTTG----------AT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGATG---TGCATATTACA-GGGA-ATGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTTGTC--TTCGCAACT-CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTT
gi|10 : --CCT-----TATGGGAGAATTT-A----------AT-GAAACTT-GGTA-TAAAGAATTATCACAATGT-GTAGATGAACTGCAT----CAA---------------------TTTTTTGTAC-GAGTTGGAACCTTTCAAC-----------TC-TTATGCAAAAT
gi|11 : agac-----T--TGGTAC---AAAGAAAGA---T-CACAATGTGTAGATGGTGC-AAT-AGT-TGTA-AGGGG-ATG-TTGCTGTGCCGA-T-G------TTTT----------A--TAGGGCCCTTGG--ACTTGG--GA---TTTCTA-TGGAG---A--ATA-tccatgatttttataccccccgc
gi|12 : atgaaaatattgattagcGC-CCTT-TGATCAACTTACAAGATTTTTCTA-TGCAAAATACT-TAGTCTTTGCAACTCCTTCTAAA-CCC-----TG-GGGGG----T-GGGGGGAAGGAAT-GAAACTT-GGTA-CAAAGAACGATCACAAT
gi|13 : ATTG-CA-AAG-GAGCAATGCCGAGTTC-AAGTGTTTT-AAGGAGTGCCGCGT-CCTT-GTA----C-TA--GGATTTAT-GT-TACAAAAT-CG-TTGTCTTGGCAATCCCCTCTAA--C
gi|14 : GCTGT-C-GA-T-T------TTTTTTTTAATCGGAATTAGGGCCTTGGG--ACTTAGCAGA--TTTTCT---GCAA---A---CA-C-TT--TTGTC-TT-C-GC-AACT---T-CCCAA-accctt
gi|15 : aggaG---TGCATATTACAAGGGGGATGCTGT-CCAATTCTTTTTTTAAAG-GAGTTGCAGCCCTTGAACTT--GCTTTTTTT-CTATt
gi|16 : TCA---TATTGT--CATCGCAACTCCTCT---TCAATCCTTT----TGAGGA--TTTCAA-TGAAA--T-----T--TGGTAtc
gi|17 : tgttgttgtaaggcagta------TC-CATCTGTTCCT---TTCA---CT----------------CCTCC---TAAACCCTT-------GGGA--TTTGGA-TTAAA--G-----T--TGGTAC---AAAGAAAG---AT-CACAATGTG
gi|18 : TCTG------TC-CGTCTATCCCA---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTA----GGGGGA--ATTTGA-TGAAACTT-----
gi|2 : TAC-----TGCGCTGTC-------G------TC-CTTCTGTCC-T---TTAA---ATTTGCAACTCGACACCCCCCCCCCCTAAACCCATG----GGGGGA--TTTT-A-TGAACCTC---------GGTAC---AAAGAAAGT---T-CACAATGTGTAGATG-TAC-A-T-A-T-TGCA-TGGGG-A---ATGCTGT-CCAG-T-G------TTTTTT--AA-AGGAGTTATGGTCTTTGG--GTTTAG--CG--TATTTTA-TGCAG---A--ATA-C-TT-----TCATT-T-GC-AACT-CCT-CCTAA-A-CC-CT-TCA--GGGGATATTAA--TGAAAC--T--CGA-TACAAAGAA--AG-AT-CA-CAATGT-GGAGATGTGCAT-TTG-CA-AGG-GG--AATGCT--GTCCAATG-TTTTTAAAGGAGTTAC-AGC-C--------------A--TAATTGTC-T--TG-A----ACT----CCTTCTAAAC-CCT--TA------------G-GGAGAA-TTT-A----------AT-GAAACGT-GGTA-CAAAGAAAGATCACAATGT-GTAGATG---TGCATATTGTGAGGGG-A-ACTGT-ATTACT--TTTTT---AGCAAGTTGTAATCCATTGACTTAGA----TTTT-TTTT----AATAAGTCATCAATTCCCAGCTGGATTCTTAAACCGTTACCCGAAGTGGTATCATTTA----AGTT-----CCTTAGGTTCCAATAATGTGATGTGGGTGTATTCATGGTAGCCGGTTTTGGGTGGTTGCCCTATTT
gi|20 : tatacTCTA-TTCAA---A--ATA-C-TT--T-GTC-TT-T-GC-AACT-CCT-CTTAA-ATTT-CA-T-A--GGAGGTTTT
gi|21 : tccatgggcttgc-CCAA-T-G------TTTT-T--AA-AGGAGTTACGGACCTTGA--ACTTAA--GA--TTTTGTA-TTCAA---A--AT--C-TT--T-t
gi|22 : TTTGT--CCTCACAACTCCTCT---TAAATCTTTA----GGGTGA--TTTTAA-TGAAACTT-----
gi|3 : TTTTT--ATACCACCCTGCAATAAAAA-GC---GGGGCGTATTTAATGCGTACCTGCGCTGTCGTCGTCTGATCTCGTCTCATCTGTCCCTCTATTCA---CTTTGT--TCTTGCAACTCCTCC---TAAACCCTTG----GAGGGAACTTTTGATTGAAACTTAACGAG--TAGTACGAAAAACAAAGA--AC-C-CAATGTGGCGATG-TGCGA-TGA-T-TG-A-AGGGG-A-G--TGCTGT-TCGA-TCT------TTTTTT--AA-AGGAGTTAGGG-CCTTGG--AC-TAG--GAC-TTTTCTATTGC-A---A--ATA-CTTT--T-GTCATT-C-GC-AACT-CCC-CTTAA-A-
gi|3 : AAAGG---T-CACAATGTGGAGCTGATGC-A-T-A-TATGCAGAGGGG-A-G-ATGTTGT-CCGA-C-GATTATTTTTTTT--AA-AGGAGTTAGGGCCCTTGGA-ACTTA---------CTCTATTGCAA---A--ATA-C-TT--T-GTG-TTAC-GC-AACTGCCTCCCTAATA-CC-TT-T-GT-GGAGATTTTGACTTGAAACTTC--TAGTTATACAGTAAGAG-AC-CAGCAATTTGGGAGATGTGCATAATGCCA-AGGAAG--AAT-CT--GCCggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|4 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttGAAGTTAGGGC--TTGG--A--TAG--GAA-TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-AC-AACT-CCT-CCTAA-A-CC-CT-T-G--GGGGATTTTGA--TGAAACTTTATTGG-TACAAAGAAAGAGCATGCA-CACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAAGTTTTTTGAAGGAATT--GGGC-CCTTTGGA----CTTA--GAATTTTT-TA-TGCAAAATACT-TTGTCTTTGCAACTC-TCCTAAACCCT-----TG-AGGGGATTTTTG----------AT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGATG---TGCATATTACAAGGGA-ATGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGG----TTTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTTCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAATTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTTttgtcgatat
gi|5 : tcattttaattacttat--AA-AGGAGTTATGGTCCTTGG--ACTTAG--GCCTTTTTTTA-TGCAA---AGCATA-C-TG--T-GTG-TT-CTGCCAACT-GCT-CCTGA-A-CCGCT-T-GTGGAGGATTT-AA--TGAA---CT--TGA-AACAAAAGAA-AG-AT-CA-CAATGT-GGAGGTGTGCATAGTG-CACAGA-GG--AATGCT--GT-CAATGGTTTCTTAAAGAGTTACGGACATCT---GA----CTTA--G--CTTTT-TAGTGCAAAATAGTATTGTC-TCACAAC-CCT-CTAA--ACTGGTTCTG-GGGGAA---T-G----------AT-G-AACTT--GTATCAAAGAAAAATCACAATGTGGTATATG---TGCATATTTTTTGGGA-ATTGTGT--CAATA--TTTTT
gi|6 : TGATGTTTTTTATTACTATTTTTTTATGC-----TCCA--------GCCGGAGG-CATATA--GTGT-----TGCACT-----TGTCTG------TC-CTTTTGTACTT---CCCAATACTTTGT--CTCCGGGACTCCTAT---TAAACAGTTT----GAGG-A--TTTCAT-TGAAACTT---------GGTAC---AGTGAAAGATTAT-CACA-TGT--AGAT--TGG-A-T-G-T-GGGA-AGGGG-A-A-A-GCTGT-TTAACT-G------TT------AC-AGGAATTATGGCCCCTGG--ACTT-C--GA--TTTTTTG-TGAAAGGCA--GTATC-ATCAT-GCC-TT-T-GC-AAAT-CCT-C--GA-G-TA-CTGT-C--GAAAATTTCAA--TGAAAC--T--TGG-TACgatgacaatttctatggattcttttctcaattagacttta
gi|7 : TTT-G----------ATAGAAACTTTGGTA-CAAAGAAAGATCACAATAT-GTAAACT---TGCATATTATAAGGGG-A-ACTGTGTCAATT--TTTTCTCTGT-GAGTTG-------------TAGA----TTTG-TTATGCAAAATGC--CAT------GGA---------TTATTTTC---CCCGAT---ATACA-TTTA------TTAAAGCCTCT--GGGTCCATAAT---------------TTGT-GTA-CCGGTTT--GGGTG-TGCCCTATTTT
gi|8 : TCCCA---TT-A---TTTTTT--CGTTGCAACTCCTCT---TTAACCCTTT----AGAAGA--CTTCAA-TGAAA--T-----T--TAATAC---AATTAAAT---AT-CACAATATAGAGATG-TAC-A-T-G-T-GGGA-AGGGGAA-G-A--CTTT-TCAA-C-C------TTTATT---A-TGGAGTTATGGCCACTGGGTACTT
gi|9 : -TAATAATGC---GGG-CGTATT--ATGC-----T---TTACC----TCTG------TT-TGTCTGTCCCT---TTCA---CATTGT--CTTCACAACT-CTCC---TAAACCCTGGGGGAGGGGGA--TTTTGA-TGAAAC-------T--TGATAC---AAAGAAAG---AT-CACAATGTGGACATT-TGC-A-T-A-T-TACA-AGGGG---G-ATACttttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATTTCATGTTTTTATGCTCTCGCCATAAAATCGCATATAGTGATGTTACAGCCATACAGGGGGCACCTG
Alignments
lowQualScore : 22222 11 444444 11111111 111 1 11 22222 222 111111 11111 33333333333 111 3333 111111 11111111 11 111111 22222 22222222 11 1 111111111 111 1 33333333333 11 11111 11 1111 1111 111 111111 11 2222 11 111 1 1 1 11 1
lowQualScore : 55555 88 000000 44444444 777 0 33 00000 3 1 3 444 666666 5 1 888 777 66 0 777 55555 66 22 4 33333333333 000 1111 5 0 66 5 5 5 4 5 111111 0 5 88888888 0 66 4 2 0 99 666 55 88 777 55 4 3 55 3 8 4 4 4 4 4 4 4 5 222222 5 77 00000 6 6 88888888 0 8 6 6 6 99 99 8 11 0 3 8 6 999999999 3 1 111 6 7777 0 1 6 88888888888 6 1 33 5 55 5 5 5 888 5 5 1 0 5 55555 44 2 999 1111 4 0 1 3 2222 5 9 666 555555 0 66 99 11 3333 0 3 0 33 444 0 0 0 2 0 0 33 0 0
lowQualScore : ..... .. ...... ........ ... . .. ..... . . . ... ...... . . ... ... .. . ... ..... .. .. . ........... ... .... . . .. . . . . . ...... . . ........ . .. . . . .. ... .. .. ... .. . . .. . . . . . . . . . . ...... . .. ..... . . ........ . . . . . .. .. . .. . . . . ......... . . ... . .... . . . ........... . . .. . .. . . . ... . . . . . ..... .. . ... .... . . . . .... . . ... ...... . .. .. .. .... . . . .. ... . . . . . . .. . .
lowQualScore : 00000 33 777777 88888888 555 0 88 00000 2 4 2 222 444444 7 7 888 888 11 9 888 11111 11 66 4 33333333333 000 5555 0 1 44 7 7 7 3 7 999999 2 0 88888888 1 11 4 5 7 55 222 00 44 000 55 0 6 00 6 0 0 0 0 0 0 0 4 0 000000 0 99 33333 7 7 44444444 6 0 7 7 7 22 22 2 00 8 2 8 7 888888888 2 7 777 7 2222 5 7 3 55555555555 7 7 88 0 22 0 7 0 888 0 0 0 4 0 22222 55 2 666 9999 3 7 4 6 1111 7 2 222 222222 8 88 00 22 5555 2 2 2 88 000 2 2 0 0 0 0 88 2 0
consensus : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AG-ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTT--TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCTG--TCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CCTT-GGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAAACCCT------T-GGGGGGATTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
Reference ( family-164 ) : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AG-ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTAGGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTT--TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCTG--TCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CCTT-GGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTCCTAA--CCT------T-GGGGGGATTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
gi|1 : TGGTGTTCTCTAG----ATTTTT--ATAC------GCA-TAAAAA-GC---GGG-CATATT--ATGC-----TATACTGTC--CGTCCG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAATTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----TATTGGTAC---AAAGAAAGAGCATGCACACTGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AGTATACTCTCTGA-T-G------TTTTTG--GA-AGGAGTTAGGGCCCTTGG--AATTAG--GA--TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTTATTGG-TAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCTG--TCCGAA--GTTTTTTGAAGGAATTTTGGGC-CCTT-GGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACTCCTCCTAA--CCT------T-GAGGGGATTTTTGAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACA-GGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGG----TTTT-CTATGCAAAATACTTTGTC--TTCGCAACT-CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTT
gi|10 : ------T-GGGAGAATTT--AAT-GAAACTT-GGTA-TAAAGAATTATCACAATGT-GTAGAT-GAACTGC-AT-----CAA------------------------TTTTTTGTAC-GAGTTGGAACCTTTCAAC-----------TC-TTATGCAAAAT
gi|11 : agacccttaTT--GAT-TAG-CTT-GGTA-CAAAGAAAGATCACAATGT-GTAGATGG---TGCAATAGTTGTAAGGGG-ATGTTGCTGTGCCGATG--TTTTATA----------GGGCCCTTGGACTTGGG----ATTT-CTATGGAGAATAtccatgatttttataccccccgc
gi|12 : atgaaaataGC-CCTT-TGATCAACTTACAAGATTTTTCTA-TGCAAAATACT-TAGTCTTTGCAACTCCTTCTAAACCCTGGGGGGT-GGGGGGAAGG--AAT-GAAACTT-GGTA-CAAAGAACGATCACAAT
gi|13 : ATTG-CA-AAG-GAGCAATGCCGAGTTC-AA--GTGTTTT-AAGGAGTGCCGCGT-CCTT-GTA----C-TAGGA---TTTATGT-TACAAAAT-CG-TTGTCTTGGCAATCCCCTCTAA--C
gi|14 : GCTGTC-GA-T-T------TTTTTTTTAATCGGAATTAGGGCCTTGGG--ACTTAGCAGA--TTTTCT---GCAA---A---CA-C-TT--TTGTC-TT-C-G-CAACT---T-CCCAA-accctt
gi|15 : agga-G---TGC-ATA-TTACAAGGGGGA---TGCTGT-CCAATTCTTTTTTTAAAG-GAGTTGCAGCCCTTGAACTT--GCTTTTTTT-CTATt
gi|16 : TCA---TATTGT--CATCGCAACTCCTCT---TCAATCCTTT----TGAGGA--TTTCAA-TGAAA--T-----T--TGGTAtc
gi|17 : tgttgttgtaaggcagta------TC-CATCTGTTCCT---TTCA---CT----------------CCTCC---TAAACCCTT-------GGGA--TTTGGA-TTAAA--G-----T--TGGTAC---AAAGAAAG---AT-CACAATGTG
gi|18 : TCTG------TC-CGTCTATCCCA---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTA----GGGGGA--ATTTGA-TGAAACTT-----
gi|2 : TAC-----TGCGCTGTC-------G------TC-CTTCTGTCC-T---TTAA---ATTTGCAACTCGACACCCCCCCCCCCTAAACCCATG----GGGGGA--TTTT-A-TGAACCTC---------GGTAC---AAAGAAAGT---T-CACAATGTGTAGATG-TAC-AT-AT-TGCA-TGGGG-A--ATGCTGTCCAG-T-G------TTTTTT--AA-AGGAGTTATGGTCTTTGG--GTTTAG--CG--TATTTTA-TGCAG---A--ATA-C-TT-----TCATT-T-G-CAACT-CCT-CCTAA-A-CC-CT--TCA-GGG-GATATTAA--TGAAAC--T--CGA-TAC-AAAGAAAG-----AT-CACAATGT-GGAGATGTGCAT-TTG-CA-AGG-GG--AATGCTG--TCCAAT--G-TTTTTAAAGGAGTTAC-AGC-C--------------ATAA---TT--------------------GTCTT-G-AACTCCTTCTAAACCCT------TAGGGAGAATTT--AAT-GAAACGT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTGTGAGGGG-A----ACTGT-ATTACT--TTTTT---AGCAAGTTGTAATCCATTGACTTAGA----TTTT-TTTT----AATAAGTCATCAATTCCCAGCTGGATTCTTAAACCGTTACCCGAAGTGGTATCATTTA----AGTT-----CCTTAGGTTCCAATAATGTGATGTGGGTGTATTCATGGTAGCCGGTTTTGGGTGGTTGCCCTATTT
gi|20 : tatacTCTA-TTCAA---A--ATA-C-TT--T-GTC-TT-T-G-CAACT-CCT-CTTAA-ATTT-CA--T-A-GGA-GGTTTT
gi|21 : tccatgggcttgcCCAA-T-G------TTTT-T--AA-AGGAGTTACGGACCTTGA--ACTTAA--GA--TTTTGTA-TTCAA---A--AT--C-TT--T-t
gi|22 : -TT--T-GTC-CT-C-A-CAACT-CCT-CTTAA-A-TC-TT--T-A-GGGTGATTTTAA--TGAAACTT
gi|3 : TTTTT--ATACCACCCTGCAATAAAAA-GC---GGGGCGTATTTAATGCGTACCTGCGCTGTCGTCGTCTGATCTCGTCTCATCTGTCCCTCTATTCA---CTTTGT--TCTTGCAACTCCTCC---TAAACCCTTG----GAGGGAACTTTTGATTGAAACTTAACGAG--TAGTACGAAAAACAAAGA--AC-C-CAATGTGGCGATG-TGCGATGAT-TG-A-AGGGG-AG--TGCTGTTCGA-TCT------TTTTTT--AA-AGGAGTTAGGG-CCTTGG--AC-TAG--GAC-TTTTCTATTGC-A---A--ATA-CTTT--T-GTCATT-C-G-CAACT-CCC-CTTAA-A-
gi|3 : AAAGG---T-CACAATGTGGAGCTGATGC-AT-ATATGCAGAGGGG-AG-ATGTTGTCCGA-C-GATTATTTTTTTT--AA-AGGAGTTAGGGCCCTTGGA-ACTTA---------CTCTATTGCAA---A--ATA-C-TT--T-GTG-TTAC-G-CAACTGCCTCCCTAATA-CC-TT--T-GTGGA-GATTTTGACTTGAAACTTC--TAGTTAT-ACAGTAAGAGACCA---GCAATTTGGGAGATGTGCATAATGCCA-AGGAAG--AAT-CTG--CCggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|4 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttGAAGTTAGGGC--TTGG--A--TAG--GAA-TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTTATTGG-TAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCTG--TCCGAA--GTTTTTTGAAGGAATT--GGGC-CCTTTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACTC-TCCTAAACCCT------T-GAGGGGATTTTTGAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACAAGGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGG----TTTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTTCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAATTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTTttgtcgatat
gi|5 : tcattttaattacttat--AA-AGGAGTTATGGTCCTTGG--ACTTAG--GCCTTTTTTTA-TGCAA---AGCATA-C-TG--T-GTG-TT-CTGCCAACT-GCT-CCTGA-A-CCGCTTGT-G-GAG-GA-TTTAA--TGAA---CT--TGA-AACAAAAGAAAG-----AT-CACAATGT-GGAGGTGTGCATAGTG-CACAGA-GG--AATGCTG--TC--AATGGTTTCTT-AAAGAGTTACGGACATCT---GA----CTTAG-----CTTTTTAGTGCAAAATAGTATTGTC-TCACAAC-CCT-CTAA--ACTGGTTC-T-GGGGGAA--T--GAT-G-AACTT--GTATCAAAGAAAAATCACAATGTGGTATAT-G---TGC-ATA-TTTTTTGGGA-A---TTGTGT--CAATA--TTTTT
gi|6 : TGATGTTTTTTATTACTATTTTTTTATGC-----TCCA--------GCCGGAGG-CATATA--GTGT-----TGCACT-----TGTCTG------TC-CTTTTGTACTT---CCCAATACTTTGT--CTCCGGGACTCCTAT---TAAACAGTTT----GAGG-A--TTTCAT-TGAAACTT---------GGTAC---AGTGAAAGATTAT-CACA-TGT--AGAT--TGG-AT-GT-GGGA-AGGGG-AA-A-GCTGTTTAACT-G------TT------AC-AGGAATTATGGCCCCTGG--ACTT-C--GA--TTTTTTG-TGAAAGGCA--GTATC-ATCAT-GCC-TT-T-G-CAAAT-CCT-C--GA-G-TA-CTG-T-C-GAA-AATTTCAA--TGAAAC--T--TGG-TAC-gatgacaatttctatggattcttttctcaattagacttta
gi|7 : TTT--GATAGAAACTTTGGTA-CAAAGAAAGATCACAATAT-GTAAAC-T---TGC-ATA-TTATAAGGGG-A----ACTGTGTCAATT--TTTTCTCTGT-GAGTTG-------------TAGA----TTTG-TTATGCAAAATGC--CAT------GGA---------TTATTTTC---CCCGAT---ATACA-TTTA------TTAAAGCCTCT--GGGTCCATAAT---------------TTGT-GTA-CCGGTTT--GGGTG-TGCCCTATTTT
gi|8 : TCCCA---TT-A---TTTTTT--CGTTGCAACTCCTCT---TTAACCCTTT----AGAAGA--CTTCAA-TGAAA--T-----T--TAATAC---AATTAAAT---AT-CACAATATAGAGATG-TAC-AT-GT-GGGA-AGGGGAAG-A--CTTTTCAA-C-C------TTTATT---A-TGGAGTTATGGCCACTGGGTACTT
gi|9 : -TAATAATGC---GGG-CGTATT--ATGC-----T---TTACC----TCTG------TT-TGTCTGTCCCT---TTCA---CATTGT--CTTCACAACT-CTCC---TAAACCCTGGGGGAGGGGGA--TTTTGA-TGAAAC-------T--TGATAC---AAAGAAAG---AT-CACAATGTGGACATT-TGC-AT-AT-TACA-AGGGG--G-ATACttttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATTTCATGTTTTTATGCTCTCGCCATAAAATCGCATATAGTGATGTTACAGCCATACAGGGGGCACCTG
Alignments
lowQualScore : 22222 11 444444 11111111 111 1 11 22222 222 111111 11111 33333333333 111 3333 111111 11111111 11 111111 22222 22222222 11 1 1111111111 111 1 111 222222222 11111 11 1111 1111 111 111111 11 2222 11 111 1 1 1 11 1
lowQualScore : 55555 88 000000 44444444 777 0 33 00000 3 1 3 444 666666 5 1 888 777 66 0 777 55555 66 22 4 33333333333 000 1111 5 0 66 5 5 5 4 5 111111 0 5 88888888 0 66 4 1 0 99 666 55 88 777 55 4 3 55 3 8 4 4 4 4 4 4 4 5 222222 5 77 00000 6 6 88888888 0 8 6 6 6 99 99 8 11 0 3 8 6 4444444444 3 1 111 6 7777 0 1 5 000 111111111 999 66 5 55 5 5 5 888 5 5 1 0 5 55555 44 2 999 1111 4 0 1 3 7777 9 666 555555 0 66 99 11 3333 0 3 0 33 444 0 0 0 2 0 0 33 0 0
lowQualScore : ..... .. ...... ........ ... . .. ..... . . . ... ...... . . ... ... .. . ... ..... .. .. . ........... ... .... . . .. . . . . . ...... . . ........ . .. . . . .. ... .. .. ... .. . . .. . . . . . . . . . . ...... . .. ..... . . ........ . . . . . .. .. . .. . . . . .......... . . ... . .... . . . ... ......... ... .. . .. . . . ... . . . . . ..... .. . ... .... . . . . .... . ... ...... . .. .. .. .... . . . .. ... . . . . . . .. . .
lowQualScore : 00000 33 777777 88888888 555 0 88 00000 2 4 2 222 444444 7 7 888 888 11 9 888 11111 11 66 4 33333333333 000 5555 0 1 44 7 7 7 3 7 999999 2 0 88888888 1 11 4 0 7 55 222 00 44 000 55 0 6 00 6 0 0 0 0 0 0 0 4 0 000000 0 99 33333 7 7 44444444 6 0 7 7 7 22 22 2 00 8 2 8 7 8888888888 2 7 777 7 2222 5 0 7 000 000000000 666 99 0 22 0 7 0 888 0 0 0 4 0 22222 55 2 666 9999 3 7 4 6 9999 2 222 222222 8 88 00 22 5555 2 2 2 88 000 2 2 0 0 0 0 88 2 0
consensus : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AG-ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTT--TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CC-TTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
Reference ( family-164 ) : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AG-ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTT--TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CC-TTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
gi|1 : TGGTGTTCTCTAG----ATTTTT--ATAC------GCA-TAAAAA-GC---GGG-CATATT--ATGC-----TATACTGTC--CGTCCG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAATTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----TATTGGTAC---AAAGAAAGAGCATGCACACTGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AGTATACTCTCTGA-T-G------TTTTTG--GA-AGGAGTTAGGGCCCTTGG--AATTAG--GA--TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTTATTGG-TAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAA--GTTTTTTGAAGGAATTTTGGGC-CC-TTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACTCCTCCTAA------CCT------T--GAGGGGA--TTTTTGAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACA-GGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTT
gi|10 : AG-AC---CCT------TATGGGAGAA--TTT--AAT-GAAACTT-GGTA-TAAAGAATTATCACAATGT-GTAGAT-GAACTGC-AT-----CAA------------------------TTTTTTGTAC-GAGTTGGAACCTTTCAAC-----------TCTTATGCAAAAT
gi|11 : TT--GAT-TAG-CTT-GGTA-CAAAGAAAGATCACAATGT-GTAGATGG---TGCAATAGTTGTAAGGGG-ATGTTGCTGTGCCGATG--TTTTATA----------GGGCCCTTGGACTTGGG----ATTTCTATGGAGAATAtccatgatttttataccccccgc
gi|12 : atgaaaataGC-CC-TTTGATCAACTTACAAGATTTTTCTA-TGCAAAATACT-TAGTCTTTGCAACTCCTTCTAA-AC---CCTGGGGGGT--GGGGGGA--AGG--AAT-GAAACTT-GGTA-CAAAGAACGATCACAAT
gi|13 : ATTG-CA-AAG-GAGCAATGCCGAGTTC-AA--GTGTTTT-AAGGAGTGCCGCGT-CC-TTGTA----C-TAGGA---TTTATGT-TACAAAAT-CG-TTGTCTTGGCAATCCCCTCTAACAC---CCT------T--
gi|14 : GCTGTC-GA-T-T------TTTTTTTTAATCGGAATTAGGGCCTTGGG--ACTTAGCAGA--TTTTCT---GCAA---A---CA-C-TT--TTGTC-TT-C-G-CAACT---T-CCCAA-
gi|15 : agga-G---TGC-ATA-TTACAAGGGGGA---TGCTGT-CCAATTCTTTTTTTAAAG-GAGTTGCAGCCCTTGAACTT--GCTTTTTTTCTATt
gi|16 : TCA---TATTGT--CATCGCAACTCCTCT---TCAATCCTTT----TGAGGA--TTTCAA-TGAAA--T-----T--TGGTAtc
gi|17 : tgttgttgtaaggcagta------TC-CATCTGTTCCT---TTCA---CT----------------CCTCC---TAAACCCTT-------GGGA--TTTGGA-TTAAA--G-----T--TGGTAC---AAAGAAAG---AT-CACAATGTG
gi|18 : TCTG------TC-CGTCTATCCCA---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTA----GGGGGA--ATTTGA-TGAAACTT-----
gi|2 : TAC-----TGCGCTGTC-------G------TC-CTTCTGTCC-T---TTAA---ATTTGCAACTCGACACCCCCCCCCCCTAAACCCATG----GGGGGA--TTTT-A-TGAACCTC---------GGTAC---AAAGAAAGT---T-CACAATGTGTAGATG-TAC-AT-AT-TGCA-TGGGG-A--ATGCTGTCCAG-T-G------TTTTTT--AA-AGGAGTTATGGTCTTTGG--GTTTAG--CG--TATTTTA-TGCAG---A--ATA-C-TT-----TCATT-T-G-CAACT-CCT-CCTAA-A-CC-CT--TCA-GGG-GATATTAA--TGAAAC--T--CGA-TAC-AAAGAAAG-----AT-CACAATGT-GGAGATGTGCAT-TTG-CA-AGG-GG--AATGCT--GTCCAAT--G-TTTTTAAAGGAGTTAC-AGC-C--------------ATAA---TT--------------------GTCTT-G-AACTCCTTCTAA-AC---CCT------TA-GGGAGAA--TTT--AAT-GAAACGT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTGTGAGGGG-A----ACTGT-ATTACT--TTTTT---AGCAAGTTGTAATCCATTGACTTAGA----TTTTTTTT----AATAAGTCATCAATTCCCAGCTGGATTCTTAAACCGTTACCCGAAGTGGTATCATTTA----AGTT-----CCTTAGGTTCCAATAATGTGATGTGGGTGTATTCATGGTAGCCGGTTTTGGGTGGTTGCCCTATTT
gi|20 : tatacTCTA-TTCAA---A--ATA-C-TT--T-GTC-TT-T-G-CAACT-CCT-CTTAA-ATTT-CA--T-A-GGA-GGTTTT
gi|21 : tccatgggcttgcCCAA-T-G------TTTT-T--AA-AGGAGTTACGGACCTTGA--ACTTAA--GA--TTTTGTA-TTCAA---A--AT--C-TT--T-t
gi|22 : -TT--T-GTC-CT-C-A-CAACT-CCT-CTTAA-A-TC-TT--T-A-GGGTGATTTTAA--TGAAACTT
gi|3 : TTTTT--ATACCACCCTGCAATAAAAA-GC---GGGGCGTATTTAATGCGTACCTGCGCTGTCGTCGTCTGATCTCGTCTCATCTGTCCCTCTATTCA---CTTTGT--TCTTGCAACTCCTCC---TAAACCCTTG----GAGGGAACTTTTGATTGAAACTTAACGAG--TAGTACGAAAAACAAAGA--AC-C-CAATGTGGCGATG-TGCGATGAT-TG-A-AGGGG-AG--TGCTGTTCGA-TCT------TTTTTT--AA-AGGAGTTAGGG-CCTTGG--AC-TAG--GAC-TTTTCTATTGC-A---A--ATA-CTTT--T-GTCATT-C-G-CAACT-CCC-CTTAA-A-
gi|3 : AAAGG---T-CACAATGTGGAGCTGATGC-AT-ATATGCAGAGGGG-AG-ATGTTGTCCGA-C-GATTATTTTTTTT--AA-AGGAGTTAGGGCCCTTGGA-ACTTA---------CTCTATTGCAA---A--ATA-C-TT--T-GTG-TTAC-G-CAACTGCCTCCCTAATA-CC-TT--T-GTGGA-GATTTTGACTTGAAACTTC--TAGTTAT-ACAGTAAGAGACCA---GCAATTTGGGAGATGTGCATAATGCCA-AGGAAG--AAT-CT--GCCggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|4 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttGAAGTTAGGGC--TTGG--A--TAG--GAA-TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTTATTGG-TAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAA--GTTTTTTGAAGGAATT--GGGC-CCTTTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACT-CTCCTAA-AC---CCT------T--GAGGGGATTTTT--GAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACAAGGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGGT---TTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTTCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAATTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTTttgtcgatat
gi|5 : tcattttaattacttat--AA-AGGAGTTATGGTCCTTGG--ACTTAG--GCCTTTTTTTA-TGCAA---AGCATA-C-TG--T-GTG-TT-CTGCCAACT-GCT-CCTGA-A-CCGCTTGT-G-GAG-GA-TTTAA--TGAA---CT--TGA-AACAAAAGAAAG-----AT-CACAATGT-GGAGGTGTGCATAGTG-CACAGA-GG--AATGCT--GTC--AATGGTTTCTT-AAAGAGTTACGGACATC-T--GA----CTTAG-----CTTTTTAGTGCAAAATAGTATTGTC-TCACAA--CCCTCTAA-ACTGGTTC------T--GGGGGAA----T--GAT-G-AACTT--GTATCAAAGAAAAATCACAATGTGGTATAT-G---TGC-ATA-TTTTTTGGGA-A---TTGTGT--CAATA--TTTTT
gi|6 : TGATGTTTTTTATTACTATTTTTTTATGC-----TCCA--------GCCGGAGG-CATATA--GTGT-----TGCACT-----TGTCTG------TC-CTTTTGTACTT---CCCAATACTTTGT--CTCCGGGACTCCTAT---TAAACAGTTT----GAGG-A--TTTCAT-TGAAACTT---------GGTAC---AGTGAAAGATTAT-CACA-TGT--AGAT--TGG-AT-GT-GGGA-AGGGG-AA-A-GCTGTTTAACT-G------TT------AC-AGGAATTATGGCCCCTGG--ACTT-C--GA--TTTTTTG-TGAAAGGCA--GTATC-ATCAT-GCC-TT-T-G-CAAAT-CCT-C--GA-G-TA-CTG-T-C-GAA-AATTTCAA--TGAAAC--T--TGG-TAC-gatgacaatttctatggattcttttctcaattagacttta
gi|7 : --TTT--GATAGAAACTTTGGTA-CAAAGAAAGATCACAATAT-GTAAAC-T---TGC-ATA-TTATAAGGGG-A----ACTGTGTCAATT--TTTTCTCTGT-GAGTTG-------------TAGA----TTTGTTATGCAAAATGC--CAT------GGA---------TTATTTTC---CCCGAT---ATACA-TTTA------TTAAAGCCTCT--GGGTCCATAAT---------------TTGT-GTA-CCGGTTT--GGGTG-TGCCCTATTTT
gi|8 : TCCCA---TT-A---TTTTTT--CGTTGCAACTCCTCT---TTAACCCTTT----AGAAGA--CTTCAA-TGAAA--T-----T--TAATAC---AATTAAAT---AT-CACAATATAGAGATG-TAC-AT-GT-GGGA-AGGGGAAG-A--CTTTTCAA-C-C------TTTATT---A-TGGAGTTATGGCCACTGGGTACTT
gi|9 : -TAATAATGC---GGG-CGTATT--ATGC-----T---TTACC----TCTG------TT-TGTCTGTCCCT---TTCA---CATTGT--CTTCACAACT-CTCC---TAAACCCTGGGGGAGGGGGA--TTTTGA-TGAAAC-------T--TGATAC---AAAGAAAG---AT-CACAATGTGGACATT-TGC-AT-AT-TACA-AGGGG--G-ATACttttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATTTCATGTTTTTATGCTCTCGCCATAAAATCGCATATAGTGATGTTACAGCCATACAGGGGGCACCTG
Alignments
lowQualScore : 22222 11 444444 11111111 111 1 11 22222 222 111111 11111 33333333333 111 3333 111111 11111111 11 111111 22222 22222222 11 1 1111111111 111 1 111 222222222 11111 11 1111 1111 111 111111 11 2222 11 111 1 1 1 11 1
lowQualScore : 55555 88 000000 44444444 777 0 33 00000 3 1 3 444 666666 5 1 888 777 66 0 777 55555 66 22 4 33333333333 000 1111 5 0 66 5 5 5 4 5 111111 0 5 88888888 0 66 4 1 0 99 666 55 88 777 55 4 3 55 3 8 4 4 4 4 4 4 4 5 222222 5 77 00000 6 6 88888888 0 8 6 6 6 99 99 8 11 0 3 8 6 4444444444 3 1 111 6 7777 0 1 5 000 111111111 999 66 5 55 5 5 5 888 5 5 1 0 5 55555 44 2 999 1111 4 0 1 3 7777 9 666 555555 0 66 99 11 3333 0 3 0 33 444 0 0 0 2 0 0 33 0 0
lowQualScore : ..... .. ...... ........ ... . .. ..... . . . ... ...... . . ... ... .. . ... ..... .. .. . ........... ... .... . . .. . . . . . ...... . . ........ . .. . . . .. ... .. .. ... .. . . .. . . . . . . . . . . ...... . .. ..... . . ........ . . . . . .. .. . .. . . . . .......... . . ... . .... . . . ... ......... ... .. . .. . . . ... . . . . . ..... .. . ... .... . . . . .... . ... ...... . .. .. .. .... . . . .. ... . . . . . . .. . .
lowQualScore : 00000 33 777777 88888888 555 0 88 00000 2 4 2 222 444444 7 7 888 888 11 9 888 11111 11 66 4 33333333333 000 5555 0 1 44 7 7 7 3 7 999999 2 0 88888888 1 11 4 0 7 55 222 00 44 000 55 0 6 00 6 0 0 0 0 0 0 0 4 0 000000 0 99 33333 7 7 44444444 6 0 7 7 7 22 22 2 00 8 2 8 7 8888888888 2 7 777 7 2222 5 0 7 000 000000000 666 99 0 22 0 7 0 888 0 0 0 4 0 22222 55 2 666 9999 3 7 4 6 9999 2 222 222222 8 88 00 22 5555 2 2 2 88 000 2 2 0 0 0 0 88 2 0
consensus : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AG-ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTT--TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CC-TTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
Reference ( family-164 ) : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AG-ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTT--TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CC-TTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
gi|1 : TGGTGTTCTCTAG----ATTTTT--ATAC------GCA-TAAAAA-GC---GGG-CATATT--ATGC-----TATACTGTC--CGTCCG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAATTCCTCC---TAAACCCTTG----GGGGGA--TTTTGA-TGAAACTT-----TATTGGTAC---AAAGAAAGAGCATGCACACTGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AGTATACTCTCTGA-T-G------TTTTTG--GA-AGGAGTTAGGGCCCTTGG--AATTAG--GA--TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTTATTGG-TAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAA--GTTTTTTGAAGGAATTTTGGGC-CC-TTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACTCCTCCTAA------CCT------T--GAGGGGA--TTTTTGAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACA-GGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTT
gi|10 : AG-AC---CCT------TATGGGAGAA--TTT--AAT-GAAACTT-GGTA-TAAAGAATTATCACAATGT-GTAGAT-GAACTGC-AT-----CAA------------------------TTTTTTGTAC-GAGTTGGAACCTTTCAAC-----------TCTTATGCAAAAT
gi|11 : TT--GAT-TAG-CTT-GGTA-CAAAGAAAGATCACAATGT-GTAGATGG---TGCAATAGTTGTAAGGGG-ATGTTGCTGTGCCGATG--TTTTATA----------GGGCCCTTGGACTTGGG----ATTTCTATGGAGAATAtccatgatttttataccccccgc
gi|12 : atgaaaataGC-CC-TTTGATCAACTTACAAGATTTTTCTA-TGCAAAATACT-TAGTCTTTGCAACTCCTTCTAA-AC---CCTGGGGGGT--GGGGGGA--AGG--AAT-GAAACTT-GGTA-CAAAGAACGATCACAAT
gi|13 : ATTG-CA-AAG-GAGCAATGCCGAGTTC-AA--GTGTTTT-AAGGAGTGCCGCGT-CC-TTGTA----C-TAGGA---TTTATGT-TACAAAAT-CG-TTGTCTTGGCAATCCCCTCTAACAC---CCT------T--
gi|14 : GCTGTC-GA-T-T------TTTTTTTTAATCGGAATTAGGGCCTTGGG--ACTTAGCAGA--TTTTCT---GCAA---A---CA-C-TT--TTGTC-TT-C-G-CAACT---T-CCCAA-
gi|15 : agga-G---TGC-ATA-TTACAAGGGGGA---TGCTGT-CCAATTCTTTTTTTAAAG-GAGTTGCAGCCCTTGAACTT--GCTTTTTTTCTATt
gi|16 : TCA---TATTGT--CATCGCAACTCCTCT---TCAATCCTTT----TGAGGA--TTTCAA-TGAAA--T-----T--TGGTAtc
gi|17 : tgttgttgtaaggcagta------TC-CATCTGTTCCT---TTCA---CT----------------CCTCC---TAAACCCTT-------GGGA--TTTGGA-TTAAA--G-----T--TGGTAC---AAAGAAAG---AT-CACAATGTG
gi|18 : TCTG------TC-CGTCTATCCCA---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTA----GGGGGA--ATTTGA-TGAAACTT-----
gi|2 : TAC-----TGCGCTGTC-------G------TC-CTTCTGTCC-T---TTAA---ATTTGCAACTCGACACCCCCCCCCCCTAAACCCATG----GGGGGA--TTTT-A-TGAACCTC---------GGTAC---AAAGAAAGT---T-CACAATGTGTAGATG-TAC-AT-AT-TGCA-TGGGG-A--ATGCTGTCCAG-T-G------TTTTTT--AA-AGGAGTTATGGTCTTTGG--GTTTAG--CG--TATTTTA-TGCAG---A--ATA-C-TT-----TCATT-T-G-CAACT-CCT-CCTAA-A-CC-CT--TCA-GGG-GATATTAA--TGAAAC--T--CGA-TAC-AAAGAAAG-----AT-CACAATGT-GGAGATGTGCAT-TTG-CA-AGG-GG--AATGCT--GTCCAAT--G-TTTTTAAAGGAGTTAC-AGC-C--------------ATAA---TT--------------------GTCTT-G-AACTCCTTCTAA-AC---CCT------TA-GGGAGAA--TTT--AAT-GAAACGT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTGTGAGGGG-A----ACTGT-ATTACT--TTTTT---AGCAAGTTGTAATCCATTGACTTAGA----TTTTTTTT----AATAAGTCATCAATTCCCAGCTGGATTCTTAAACCGTTACCCGAAGTGGTATCATTTA----AGTT-----CCTTAGGTTCCAATAATGTGATGTGGGTGTATTCATGGTAGCCGGTTTTGGGTGGTTGCCCTATTT
gi|20 : tatacTCTA-TTCAA---A--ATA-C-TT--T-GTC-TT-T-G-CAACT-CCT-CTTAA-ATTT-CA--T-A-GGA-GGTTTT
gi|21 : tccatgggcttgcCCAA-T-G------TTTT-T--AA-AGGAGTTACGGACCTTGA--ACTTAA--GA--TTTTGTA-TTCAA---A--AT--C-TT--T-t
gi|22 : -TT--T-GTC-CT-C-A-CAACT-CCT-CTTAA-A-TC-TT--T-A-GGGTGATTTTAA--TGAAACTT
gi|3 : TTTTT--ATACCACCCTGCAATAAAAA-GC---GGGGCGTATTTAATGCGTACCTGCGCTGTCGTCGTCTGATCTCGTCTCATCTGTCCCTCTATTCA---CTTTGT--TCTTGCAACTCCTCC---TAAACCCTTG----GAGGGAACTTTTGATTGAAACTTAACGAG--TAGTACGAAAAACAAAGA--AC-C-CAATGTGGCGATG-TGCGATGAT-TG-A-AGGGG-AG--TGCTGTTCGA-TCT------TTTTTT--AA-AGGAGTTAGGG-CCTTGG--AC-TAG--GAC-TTTTCTATTGC-A---A--ATA-CTTT--T-GTCATT-C-G-CAACT-CCC-CTTAA-A-
gi|3 : AAAGG---T-CACAATGTGGAGCTGATGC-AT-ATATGCAGAGGGG-AG-ATGTTGTCCGA-C-GATTATTTTTTTT--AA-AGGAGTTAGGGCCCTTGGA-ACTTA---------CTCTATTGCAA---A--ATA-C-TT--T-GTG-TTAC-G-CAACTGCCTCCCTAATA-CC-TT--T-GTGGA-GATTTTGACTTGAAACTTC--TAGTTAT-ACAGTAAGAGACCA---GCAATTTGGGAGATGTGCATAATGCCA-AGGAAG--AAT-CT--GCCggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|4 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttGAAGTTAGGGC--TTGG--A--TAG--GAA-TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTTATTGG-TAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCT--GTCCGAA--GTTTTTTGAAGGAATT--GGGC-CCTTTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACT-CTCCTAA-AC---CCT------T--GAGGGGATTTTT--GAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACAAGGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGGT---TTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTTCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAATTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTTttgtcgatat
gi|5 : tcattttaattacttat--AA-AGGAGTTATGGTCCTTGG--ACTTAG--GCCTTTTTTTA-TGCAA---AGCATA-C-TG--T-GTG-TT-CTGCCAACT-GCT-CCTGA-A-CCGCTTGT-G-GAG-GA-TTTAA--TGAA---CT--TGA-AACAAAAGAAAG-----AT-CACAATGT-GGAGGTGTGCATAGTG-CACAGA-GG--AATGCT--GTC--AATGGTTTCTT-AAAGAGTTACGGACATC-T--GA----CTTAG-----CTTTTTAGTGCAAAATAGTATTGTC-TCACAA--CCCTCTAA-ACTGGTTC------T--GGGGGAA----T--GAT-G-AACTT--GTATCAAAGAAAAATCACAATGTGGTATAT-G---TGC-ATA-TTTTTTGGGA-A---TTGTGT--CAATA--TTTTT
gi|6 : TGATGTTTTTTATTACTATTTTTTTATGC-----TCCA--------GCCGGAGG-CATATA--GTGT-----TGCACT-----TGTCTG------TC-CTTTTGTACTT---CCCAATACTTTGT--CTCCGGGACTCCTAT---TAAACAGTTT----GAGG-A--TTTCAT-TGAAACTT---------GGTAC---AGTGAAAGATTAT-CACA-TGT--AGAT--TGG-AT-GT-GGGA-AGGGG-AA-A-GCTGTTTAACT-G------TT------AC-AGGAATTATGGCCCCTGG--ACTT-C--GA--TTTTTTG-TGAAAGGCA--GTATC-ATCAT-GCC-TT-T-G-CAAAT-CCT-C--GA-G-TA-CTG-T-C-GAA-AATTTCAA--TGAAAC--T--TGG-TAC-gatgacaatttctatggattcttttctcaattagacttta
gi|7 : --TTT--GATAGAAACTTTGGTA-CAAAGAAAGATCACAATAT-GTAAAC-T---TGC-ATA-TTATAAGGGG-A----ACTGTGTCAATT--TTTTCTCTGT-GAGTTG-------------TAGA----TTTGTTATGCAAAATGC--CAT------GGA---------TTATTTTC---CCCGAT---ATACA-TTTA------TTAAAGCCTCT--GGGTCCATAAT---------------TTGT-GTA-CCGGTTT--GGGTG-TGCCCTATTTT
gi|8 : TCCCA---TT-A---TTTTTT--CGTTGCAACTCCTCT---TTAACCCTTT----AGAAGA--CTTCAA-TGAAA--T-----T--TAATAC---AATTAAAT---AT-CACAATATAGAGATG-TAC-AT-GT-GGGA-AGGGGAAG-A--CTTTTCAA-C-C------TTTATT---A-TGGAGTTATGGCCACTGGGTACTT
gi|9 : -TAATAATGC---GGG-CGTATT--ATGC-----T---TTACC----TCTG------TT-TGTCTGTCCCT---TTCA---CATTGT--CTTCACAACT-CTCC---TAAACCCTGGGGGAGGGGGA--TTTTGA-TGAAAC-------T--TGATAC---AAAGAAAG---AT-CACAATGTGGACATT-TGC-AT-AT-TACA-AGGGG--G-ATACttttttt
blockSeqs : TTACT TT CACCCT ATAAAAA CGG G TA GTACC G G G GTC ATCTCG T A CTA ATA AA CCC GGGGA AC CA T CTTAACGAG GAA ATTA . GA G G A C G AGAT C GATTATT TT T G GT GCA CT AT GGC GC T T CA T A A T C G C T T G TGTG T CT TTTAT T A AGACCA G C C A GC GA A TG A C A TTTGATCAA T A GAT G AGTA T C C TGG GGGGGGT TTT . A TG T G G AAC A G G G TGTTG GC G TCT TAC G T G CTTT G CAA GCTGGA TT GT CA AAGG A AG GTG T A G G TG T
blockSeqs : . T TAATAAT . . . . G G G T . . G . . . . T . GG . CTC . AA . G . . . C . AAGA . CT . . T A G C AT . . . . . . A . . . . . . . . TCA . . TTC . . AGCATG . . . . . . G . G A . TTTGGA T G . . ACT G T . . TAT T . . G . . . . . . A . TG GT A G AAG G T A T T C ACTCC TA CC T . A . AT . A . . . .
blockSeqs : . . . . . G A A . . . T . . . . A . TG . CTT . A . G . . . G . AAT . T . . C . A A A . . . . . . . . . . . . . . . TGT . . CT . . AT . . . . . . . . . A . TTGTA T A . . ACT T C . . TA A . . G . . . . . . G . TG C T T AGC C T A . . . . . . A . . . . . G . . . .
blockSeqs : . . . . . . . A . . . . G . TG . TT . T . G . . . G . AGT . G . . G . G . A . . . . . . . . . . . . . . . GTC . . T . . AT . . . . . . . . . . . TGA . A . . CG C C . . T T . . G . . . . . . A . TT A G G AAG T T A .
blockSeqs : . . T . . . . G . CA . GT . G . T . . . C . AAA . G . . G . G . A . . . . . . . . . . . . . . . TA . . T . . . . . . . . . . . . . . . . . . T T . . G . . . . . . T . A C A A TGT G . . .
blockSeqs : . . G . . . . T . CA . TT . A . . . . . . . GAT . G . . G . G . G . . . . . . . . . . . . . . . TA . . . . T . . . A . . . . . . A . A . A T . . . . .
blockSeqs : . . . . T . TG . CT A . . C . . T . C . A . . . . . . . . . . . . . . . TG . . . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . T . . . G . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : *** TT********* A*** AAT*** TG**** CT*** TTGNA***** **
originalCons : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC--CGTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAACTT-----T--TGGTAC---AAAGAAAGA--AT-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGG-AG-ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAACTTT--TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CC-TTGGA----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
finalCons : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC---GTCTG------TC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTG----GGGGGA--TTTCGA-TGAAATT---------TGGTAC---AAAGAAAGA---T-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGGAAT---GCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CTTG----GGG-GATTTTGA--TGAAACCT---TGG-TAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCT--GTCCGAA--GTTTTTTGAAGGAGTTNCGGGC-CCTTGNA-----CTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATTTCATGTTTTTATGCTCTCGCCATAAAATCGCATATAGTGATGTTACAGCCATACAGGGGGCACCTG
Alignments
lowQualScore : 22222 11 444444 11111111 111 1 11 22222 3333333333 111111111111 111 11 11111111 11 111111 222222222 22222222 11 1 2222222222 111 1 111 222222222 11111 11 1111 1111 111 111111 11 2222 11 111 1 1 1 11 1
lowQualScore : 55555 88 000000 44444444 777 0 33 00000 3 1 3 8 0000000000 5 1 888 777 66 0 777 0 9999 66 22 4 3 666666666666 000 888 5 66 5 5 5 4 5 33 0 5 88888888 66 4 1 0 99 666 55 88 777 55 4 3 55 3 8 4 4 4 4 4 4 4 5 222222 5 77 444444444 6 88888888 0 8 6 6 6 99 99 8 11 0 3 8 2222222222 3 1 111 6 7777 0 1 5 000 111111111 999 66 5 55 5 5 5 888 5 5 1 0 5 55555 44 2 999 1111 4 0 1 3 7777 9 666 555555 0 66 99 11 3333 0 3 0 33 444 0 0 0 2 0 0 33 0 0
lowQualScore : ..... .. ...... ........ ... . .. ..... . . . . .......... . . ... ... .. . ... . .... .. .. . . ............ ... ... . .. . . . . . .. . . ........ .. . . . .. ... .. .. ... .. . . .. . . . . . . . . . . ...... . .. ......... . ........ . . . . . .. .. . .. . . . .......... . . ... . .... . . . ... ......... ... .. . .. . . . ... . . . . . ..... .. . ... .... . . . . .... . ... ...... . .. .. .. .... . . . .. ... . . . . . . .. . .
lowQualScore : 00000 33 777777 88888888 555 0 88 00000 2 4 2 0 8888888888 7 7 888 888 11 9 888 1 4444 11 66 4 7 666666666666 000 888 0 44 7 7 7 3 7 66 2 0 88888888 11 4 0 7 55 222 00 44 000 55 0 6 00 6 0 0 0 0 0 0 0 4 0 000000 0 99 777777777 7 44444444 6 0 7 7 7 22 22 2 00 8 2 8 5555555555 2 7 777 7 2222 5 0 7 000 000000000 666 99 0 22 0 7 0 888 0 0 0 4 0 22222 55 2 666 9999 3 7 4 6 9999 2 222 222222 8 88 00 22 5555 2 2 2 88 000 2 2 0 0 0 0 88 2 0
consensus : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC-GTC---------CGTC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTGGGG----GGA--TTTCGA-TGAAACT-------T----GGTAC---AAAGAAAGA---T-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGGA--ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAAC--CTT---GGTAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCTG--TCCGAA--GTTTTTTGAAGGAGTTNCGGGCCC-TT-GG---ACTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
Reference ( family-164 ) : TGGTGTTCTCTANTACTATTTTT--ATAC-----TGCA-TAAAAA-GC---GGG-CGTATT--ATGC-----TGCGCTGTC-GTC---------TGTC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTGGGG----GGA--TTTCGA-TGAAATT-------T----GGTAC---AAAGAAAGA---T-CACAATGTGGAGATG-TGC-AT-AT-TGCA-AGGGGA--ATGCTGTCCGA-T-G------TTTTTT--AA-AGGAGTTANGGCCCTTGG--ACTTAG--GA--TTTTCTA-TGCAA---A--ATA-C-TT--T-GTC-TT-C-G-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAAC--CTT---GGTAC-AAAGAAAGAG--CATGCACAATGT-GGAGATGTGCATATTG-CA-AGG-GG--AATGCTG--TCCGAA--GTTTTTTGAAGGAGTTNCGGGCCC-TT-GN---ACTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTCGCAACTCCTTCTAA-AC---CCT------T--GGGGGGA--TTT--GAT-GAAACTT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTACAAGGGG-A---TGCTGT-CCGATN--TTTTTTAAAG-GAGTTGGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTCGTC--TTCGCAACT-CCTTCTTAATCCCTAACCCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCGT-GTA-CCGGCTT--GGCGG-TGCCCTATTTT
gi|1 : TGGTGTTCTCTAG----ATTTTT--ATAC------GCA-TAAAAA-GC---GGG-CATATT--ATGC-----TATACTGTCCGTC---------CGTC-CGTCTGTCCCT---TTCA---CTTTGT--CTTCGCAATTCCTCC---TAAACCCTTGGGG----GGA--TTTTGA-TGAAACT-------TTATTGGTAC---AAAGAAAGAGCATGCACACTGTGGAGATG-TGC-AT-AT-TGCA-AGGGGAGTATACTCTCTGA-T-G------TTTTTG--GA-AGGAGTTAGGGCCCTTGG--AATTAG--GA--TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAAC--TTTATTGGTAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCTG--TCCGAA--GTTTTTTGAAGGAATTTTGGGCCC-TT-GG---ACTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACTCCTCCTAA------CCT------T--GAGGGGA--TTTTTGAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACA-GGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGG----TTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTCCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAGTTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTT
gi|10 : AG-AC---CCT------TATGGGAGAA--TTT--AAT-GAAACTT-GGTA-TAAAGAATTATCACAATGT-GTAGAT-GAACTGC-AT-----CAA------------------------TTTTTTGTAC-GAGTTGGAACCTTTCAAC-----------TCTTATGCAAAAT
gi|11 : TT--GAT-TAG-CTT-GGTA-CAAAGAAAGATCACAATGT-GTAGATGG---TGCAATAGTTGTAAGGGG-ATGTTGCTGTGCCGATG--TTTTATA----------GGGCCCTTGGACTTGGG----ATTTCTATGGAGAATAtccatgatttttataccccccgc
gi|12 : atgaaaataGCCC-TTTGATCAACTTACAAGATTTTTCTA-TGCAAAATACT-TAGTCTTTGCAACTCCTTCTAA-AC---CCTGGGGGGT--GGGGGGA--AGG--AAT-GAAACTT-GGTA-CAAAGAACGATCACAAT
gi|13 : ATTG-CA-AAG-GAGCAATGCCGAGTTC-AA--GTGTTTT-AAGGAGTGCCGCGTCC-TT-GT---AC-TAGGA---TTTATGT-TACAAAAT-CG-TTGTCTTGGCAATCCCCTCTAACAC---CCT------T--
gi|14 : GCTGTC-GA-T-T------TTTTTTTTAATCGGAATTAGGGCCTTGGG--ACTTAGCAGA--TTTTCT---GCAA---A---CA-C-TT--TTGTC-TT-C-G-CAACT---T-CCCAA-
gi|15 : agga-G---TGC-ATA-TTACAAGGGGGA---TGCTGT-CCAATTCTTTTTTTAAAG-GAGTTGCAGCCCTTGAACTT--GCTTTTTTTCTATt
gi|16 : TCA---TATTGT--CATCGCAACTCCTCT---TCAATCCTTTTGA----GGA--TTTCAA-TGAAATT-------T----GGTAtc
gi|17 : tgttgttgtaaggcagtaTC-CATCTGTTCCT---TTCA---CT----------------CCTCC---TAAACCCTTGGG-------A--TTTGGA-TTAAAGT-------T----GGTAC---AAAGAAAGA---T-CACAATGTG
gi|18 : TC---------TGTC-CGTCTATCCCA---TTCA---CTTTGT--CTTCGCAACTCCTCC---TAAACCCTTAGGG----GGA--ATTTGA-TGAAACT-------T----
gi|2 : TAC-----TGCGCTGTC-GTC--------------CTTCTGTCC-T---TTAA---ATTTGCAACTCGACACCCCCCCCCCCTAAACCCATGGGG----GGA--TTTT-A-TGAACCT-------C----GGTAC---AAAGAAAGT---T-CACAATGTGTAGATG-TAC-AT-AT-TGCA-TGGGGA--ATGCTGTCCAG-T-G------TTTTTT--AA-AGGAGTTATGGTCTTTGG--GTTTAG--CG--TATTTTA-TGCAG---A--ATA-C-TT-----TCATT-T-G-CAACT-CCT-CCTAA-A-CC-CT--TCA-GGG-GATATTAA--TGAAA---CTC---GATAC-AAAGAAAG-----AT-CACAATGT-GGAGATGTGCAT-TTG-CA-AGG-GG--AATGCTG--TCCAAT--G-TTTTTAAAGGAGTTAC-AGCC--------------ATAA---TT--------------------GTCTT-G-AACTCCTTCTAA-AC---CCT------TA-GGGAGAA--TTT--AAT-GAAACGT-GGTA-CAAAGAAAGATCACAATGT-GTAGAT-G---TGC-ATA-TTGTGAGGGG-A----ACTGT-ATTACT--TTTTT---AGCAAGTTGTAATCCATTGACTTAGA----TTTTTTTT----AATAAGTCATCAATTCCCAGCTGGATTCTTAAACCGTTACCCGAAGTGGTATCATTTA----AGTT-----CCTTAGGTTCCAATAATGTGATGTGGGTGTATTCATGGTAGCCGGTTTTGGGTGGTTGCCCTATTT
gi|20 : tatacTCTA-TTCAA---A--ATA-C-TT--T-GTC-TT-T-G-CAACT-CCT-CTTAA-ATTT-CA--T-A-GGA-GGTTTT
gi|21 : tccatgggcttgcCCAA-T-G------TTTT-T--AA-AGGAGTTACGGACCTTGA--ACTTAA--GA--TTTTGTA-TTCAA---A--AT--C-TT--T-t
gi|22 : -TT--T-GTC-CT-C-A-CAACT-CCT-CTTAA-A-TC-TT--T-A-GGGTGATTTTAA--TGAAAC--TT
gi|3 : TTTTT--ATACCACCCTGCAATAAAAA-GC---GGGGCGTATTTAATGCGTACCTGCGCTGTC-GTCGTCTGATCTCGTCTCATCTGTCCCTCTATTCA---CTTTGT--TCTTGCAACTCCTCC---TAAACCCTTGGAG----GGAACTTTTGATTGAAACTTAACGAGT----AGTACGAAAAACAAAGA---A-CCCAATGTGGCGATG-TGCGATGAT-TG-A-AGGGGA--GTGCTGTTCGA-TCT------TTTTTT--AA-AGGAGTTAGGG-CCTTGG--AC-TAG--GAC-TTTTCTATTGC-A---A--ATA-CTTT--T-GTCATT-C-G-CAACT-CCC-CTTAA-A-
gi|3 : AAAGG---T-CACAATGTGGAGCTGATGC-AT-ATATGCAGAGGGGAG-ATGTTGTCCGA-C-GATTATTTTTTTT--AA-AGGAGTTAGGGCCCTTGGA-ACTTA---------CTCTATTGCAA---A--ATA-C-TT--T-GTG-TTAC-G-CAACTGCCTCCCTAATA-CC-TT--T-GTGGA-GATTTTGACTTGAAACTTCTA---GTTAT-ACAGTAAGAGACCA---GCAATTTGGGAGATGTGCATAATGCCA-AGGAAG--AAT-CTG--CCggtcacaatgtggagctgatgcatatatgcagaggggagatgttgtccgacgattattttttttaaaggagttagggcccttggaacttactctattgcaaaatactttgtgttacgcaactgcctccctaatacctttgtggagattttgacttgaaacttctagttatacagtaagagaccagcaatttgggagatgtgcataatgccaaggaagaatctgccttgtcgatat
gi|4 : tttttataccaccctgcaataaaaagcggggcgtatttaatgcgtacctgcgctgtcgtcgtctgatctcgtctcatctgtccctctattcactttgttcttgcaactcctcctaaacccttggagggaacttttgattgaaacttaacgagtagtacgaaaaacaaagaacccaatgtggcgatgtgcgatgattgaaggggagtgctgttcgatctttttttaaaggagttagggccttggactaggacttttctattgcaaatacttttgtcattcgcaactccccttGAAGTTAGGGC--TTGG--A--TAG--GAA-TTTTCTG-TGCAA---A--ATA-C-TT--T-GTC-TT-C-A-CAACT-CCT-CCTAA-A-CC-CT--T-G-GGG-GATTTTGA--TGAAAC--TTTATTGGTAC-AAAGAAAGAG--CATGCACACTGT-GGAGATGTGCATATTG-CA-AGG-GG--AGTGCTG--TCCGAA--GTTTTTTGAAGGAATT--GGGCCCTTT-GG---ACTTAGAA---TTTTTTA-TGCAAAATACT-TTGTCTTTGCAACT-CTCCTAA-AC---CCT------T--GAGGGGATTTTT--GAT-GAAACTT-AATA-CAAAGAAAGATCACAATGT-GGAGAT-G---TGC-ATA-TTACAAGGGA-A---TGCTGT-CCGATG--TTTTTTAAAG-GAGTTAGAGCCCTTGGACTTAGGT---TTTTCTATGCAAAATACTTTGTC--TTCGCAACT-CCTTCTTAATCCCTAACTCGATCCGATGTT-TTTAAAGGAATTAAGGCCCCT--GTGTCAATAATAT-ATGCGGGCGTA-TCAT-GTA-CTGGCTT--GGCGG-TGCCCTATTTTttgtcgatat
gi|5 : tcattttaattacttat--AA-AGGAGTTATGGTCCTTGG--ACTTAG--GCCTTTTTTTA-TGCAA---AGCATA-C-TG--T-GTG-TT-CTGCCAACT-GCT-CCTGA-A-CCGCTTGT-G-GAG-GA-TTTAA--TGAA----CTT---GAAACAAAAGAAAG-----AT-CACAATGT-GGAGGTGTGCATAGTG-CACAGA-GG--AATGCTG--TC--AATGGTTTCTT-AAAGAGTTACGGACAT-CT-G----ACTTAG-----CTTTTTAGTGCAAAATAGTATTGTC-TCACAA--CCCTCTAA-ACTGGTTC------T--GGGGGAA----T--GAT-G-AACTT--GTATCAAAGAAAAATCACAATGTGGTATAT-G---TGC-ATA-TTTTTTGGGA-A---TTGTGT--CAATA--TTTTT
gi|6 : TGATGTTTTTTATTACTATTTTTTTATGC-----TCCA--------GCCGGAGG-CATATA--GTGT-----TGCACT--T-GTC---------TGTC-CTTTTGTACTT---CCCAATACTTTGT--CTCCGGGACTCCTAT---TAAACAGTTTGAG----G-A--TTTCAT-TGAAACT-------T----GGTAC---AGTGAAAGA---T-TATCACATGTAGAT--TGG-AT-GT-GGGA-AGGGGA--AAGCTGTTTAACT-G----------TT--AC-AGGAATTATGGCCCCTGG--ACTT-C--GA--TTTTTTG-TGAAAGGCA--GTATC-ATCAT-GCC-TT-T-G-CAAAT-CCT-C--GA-G-TA-CTG-T-C-GAA-AATTTCAA--TGAAA---CTT---GGTAC-gatgacaatttctatggattcttttctcaattagacttta
gi|7 : --TTT--GATAGAAACTTTGGTA-CAAAGAAAGATCACAATAT-GTAAAC-T---TGC-ATA-TTATAAGGGG-A----ACTGTGTCAATT--TTTTCTCTGT-GAGTTG-------------TAGA----TTTGTTATGCAAAATGC--CAT------GGA---------TTATTTTC---CCCGAT---ATACA-TTTA------TTAAAGCCTCT--GGGTCCATAAT---------------TTGT-GTA-CCGGTTT--GGGTG-TGCCCTATTTT
gi|8 : TCCCA---TT-A---TTTTTT--CGTTGCAACTCCTCT---TTAACCCTTTAGA----AGA--CTTCAA-TGAAATT-------T----AATAC---AATTAAATA---T-CACAATATAGAGATG-TAC-AT-GT-GGGA-AGGGGA--AGACTTTTCAA-C-C------TTTATT---A-TGGAGTTATGGCCACTGGGTACTT
gi|9 : -TAATAATGC---GGG-CGTATT--ATGC-----T---TTACC--TC---------TGTT-TGTCTGTCCCT---TTCA---CATTGT--CTTCACAACTC-TCC---TAAACCCTGGGGGAGGGGGA--TTTTGA-TGAAACT-------T----GATAC---AAAGAAAGA---T-CACAATGTGGACATT-TGC-AT-AT-TACA-AGGGGG--ATACttttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATTTCATGTTTTTATGCTCTCGCCATAAAATCGCATATAGTGATGTTACAGCCATACAGGGGGCACCTG