lowQualScore : 1 2222 222222222
lowQualScore : 2 6 33 5 2 777 8888 2 000000000 2 99 33 2 2 2 555
lowQualScore : . . .. . . ... .... . ......... . .. .. . . . ...
lowQualScore : 7 0 77 3 7 333 5555 7 888888888 7 66 99 9 9 9 000
consensus : TACGA-AAGC--CCA-TTGA-GCTCATTTTC---GTAGACGAAAAAA-AAAAA----TAT--TTTT-TCGCG--T--TA-T-TA-CGCG---AAACTT
Reference ( gi|95227 ) : TACGA-AA-C--CCA-TTGA-GCTCATTTTC---GTAGACAAAAAAA-AAAAA----TAT--TTTT-TCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95228 : TACGA-AAGC--CCA-TTGA-GCTCATTTTC---GTAGTC--AAAAA-TAAAA----TAT--TTTT-T-GCG--T--TA-T-TA-CGCG---AAACTT
gi|95229 : TACGA-AAGC--CCA-TTGA-GCTCATTTTC---GTAG--AGAAAAA-AAATA----TAT--TTTT-TCGCGAAT--TA----A-CGCG---AAACTT
gi|95231 : TACGA-AAGC--CCA-TTGA-GCTAATTTTTA--GTAGA-AGAAAAA-AAAAA----TAT--TTGTGTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95230 : TACGA-AAGC--CCA-TTGA-GCTCATTTTC---GTAGA-GAGAAAA-AAAAC----CA---TTTT-TCGCG--T--TA-T-TA-CGCC---GAACTT
gi|95233 : TACGA-AA-G--CCA-TTGA-GCTCA-TTTC---GTAG-------AG-AAAAATTTTTTT--TTTT-TCGCT--T--TA-T-TA-CGCG----AACTT
gi|95234 : ACGA-AA-C--CCA-TTGA-GCTCATTTTC---GTAAGGGAAAAAA-AAATA----TA---TTTT-TCGCG--A--TATT-TACCGCG---AAACTT
gi|95235 : ACGA-AA-GGGCCA-TTGA-G-TCATTTTC---GTAGA-GAAAAAA-AAATA----TAA--TTCT-TGCCG--TTGTA-T-TA-CGCG---AAATTT
gi|95236 : ACGATAA-C--CCA-TTGA-GCTCATTTGC---GTGGTT-----GG-AAAAA----T-C--TTTT-TCGCGT-T--TA-TAAA-CGCG---AAAC
gi|95237 : ACGA-AAAC--CCA-CTGA-ACTCATTTTC---GT-GTCTGAAAAA-AA-----------------TCGCG--T--TA-A-TA-CACG---AAAATT
gi|95238 : ACGA-GAGC--CCA-TTGA-GCCTATTTTC---GTAG-CAGAAAAATAAAAA----TAA--ATTC-CCGC
gi|95239 : CGA-AA-G--CCAATCGA-GCTCATTTTC---GTAGAGAAAATAA-AAAAA----TA---TTGT-TCGCG--T--TA-T-TA-CGCG---AAATTT
gi|95241 : A-AG-C--CCA-T-GA-GCTCATTTTT---GTAGAGAAAAAAA-AAAA-------T--TTTT-TCGCG--T--TA-T-TA-CGCG---AAAATT
gi|95232 : A-GA-C--CCAGTTGACGCTCATTTTTATGGTAGACGCAAACA-AAATAGT--TATAATTTT-TCGCG--T--TA-T-TA-CGCGAATAAACTT
gi|95240 : tacgactcA-AG-C--CCA-TTAG-GCTCATT--C---GTAGATGAAAA-----AAA----TA---TTCT-CCGCGA-T--TA-T-TA-CGCG---AGACCT
gi|95242 : a-AG-C--CCA-CTGA-GCTCATTTTC---GGAGTTGAAAAAT-AAAAT----TA----TTT-TCGCG--T--TA-T-AC-CGCG---CAACTT
Alignments
lowQualScore : 1 1111
lowQualScore : 444 2 2 2 666 7 2 33 7777 2 5555 99 33 2 2 2 444
lowQualScore : ... . . . ... . . .. .... . .... .. .. . . . ...
lowQualScore : 777 5 5 5 999 4 5 44 2222 5 3333 00 77 7 7 7 777
consensus : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAGA-GAAAA-AAAAAAA--TAT--TT-TTT----CGCG--T--TA-T-TA-CGCG---AAACTT
Reference ( family-872 ) : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAGACGAAAA-AAAAAAA--TAT--TT-TTT----CGCG--T--TA-T-TA-CGCG---AAACTT
gi|95227 : TACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTAGACAAAAA-AAAAAAA--TAT--TT-TTT----CGCG--T--TA-T-TA-CGCG---AAACTT
gi|95228 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAGTC--AAA-AATAAAA--TAT--TT-TTT-----GCG--T--TA-T-TA-CGCG---AAACTT
gi|95229 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAGA--GAAA-AAAAATA--TAT--TT-TTT----CGCGAAT--TA----A-CGCG---AAACTT
gi|95230 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAGA-GAGAA-AAAAAAC--CA---TT-TTT----CGCG--T--TA-T-TA-CGCC---GAACTT
gi|95231 : TACGA---AAGC-CCA-TTGA-GCTAATTTTTA--GTAGAAGAAA--AAAAAAA--TAT--TTGTGT----CGCG--T--TA-T-TA-CGCG---AAACTT
gi|95232 : TACGACTCAGAC-CCAGTTGACGCTCATTTTTATGGTAGACGCAAA-CAAAATAGTTATAATT-TTT----CGCG--T--TA-T-TA-CGCGAATAAACTT
gi|95233 : TACGA---AAGC-C-A-TTGA-GCTCATTT-C---GTAGA--------GAAAAA--TTT--TT-TTTTTTTCGCT--T--TA-T-TA-CGCG----AACTT
gi|95234 : ACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTAAGGGAAAA-AAAAATA--TA---TT-TTT----CGCG--A--TATT-TACCGCG---AAACTT
gi|95235 : ACGA---AAGGGCCA-TTGA-G-TCATTTTC---GTAGA-GAAAA-AAAAATA--TAA--TT-CTT----GCCG--TTGTA-T-TA-CGCG---AAATTT
gi|95236 : ACGA---TAAC-CCA-TTGA-GCTCATTTGC---GTGGTTG------GAAAAA--T-C--TT-TTT----CGCGT-T--TA-TAAA-CGCG---AAAC
gi|95237 : ACGA---AAAC-CCA-CTGA-ACTCATTTTC---GTGTCTGAAAA-AAA----------------T----CGCG--T--TA-A-TA-CACG---AAAATT
gi|95238 : ACGA---GAGC-CCA-TTGA-GCCTATTTTC---GTAGCAGAAAA-ATAAAAA--TAA--AT-TCC----CGC
gi|95239 : CGA---AAGC-CAA-TCGA-GCTCATTTTC---GTAGA-GAAAATAAAAAAA--TA---TT-GTT----CGCG--T--TA-T-TA-CGCG---AAATTT
gi|95240 : A---AAGC-CCA-TTAG-GCTCATT--C---GTAGATGAAAA-----AAA--TA---TT-CTC----CGCGA-T--TA-T-TA-CGCG---AGACCT
gi|95241 : ---AAGC-CCA-T-GA-GCTCATTTTT---GTAGA-GAAAA-AAAAAAA--T----TT-TTT----CGCG--T--TA-T-TA-CGCG---AAAATT
gi|95242 : AGC-CCA-CTGA-GCTCATTTTC---GGAGTTGAAAA-ATAAAAT--TA----T-TTT----CGCG--T--TA-T-AC-CGCG---CAACTT
Alignments
lowQualScore : 1111 111
lowQualScore : 444 2 2 2 666 6666 0 2 55555 66666 444 2 99 33 2 2 2 444
lowQualScore : ... . . . ... .... . . ..... ..... ... . .. .. . . . ...
lowQualScore : 777 5 5 5 999 6666 5 5 66666 22222 888 5 00 77 7 7 7 777
consensus : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
Reference ( family-872 ) : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95227 : TACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTAG--ACAAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95228 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG----TCAAA-A----ATAAA-----ATAT-TT-TTT-GCG--T--TA-T-TA-CGCG---AAACTT
gi|95229 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-G-AAA-A----AAAAT-----ATAT-TT-TTTCGCGAAT--TA----A-CGCG---AAACTT
gi|95230 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAGAA-A----AAAAA-----CCA--TT-TTTCGCG--T--TA-T-TA-CGCC---GAACTT
gi|95231 : TACGA---AAGC-CCA-TTGA-GCTAATTTTTA--GTAG--AAGAA-A-A----AAAAA-----ATAT-TTGTGTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95232 : TACGACTCAGAC-CCAGTTGACGCTCATTTTTATGGTAG--A-CGCAA-A----CAAAATAGTTATAA-TT-TTTCGCG--T--TA-T-TA-CGCGAATAAACTT
gi|95233 : TACGA---AAGC-C-A-TTGA-GCTCATTT-C---GTAG--A-GAAAA-ATTTT-----------TTT-TT-TTTCGCT--T--TA-T-TA-CGCG----AACTT
gi|95234 : ACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTA---A-GGGAA-A----AAAAA-----ATATATT-TTTCGCG--A--TATT-TACCGCG---AAACTT
gi|95235 : ACGA---AAGGGCCA-TTGA-G-TCATTTTC---GTAG--A-GAAAA-A----AAAAT-----ATAA-TT-CTTGCCG--TTGTA-T-TA-CGCG---AAATTT
gi|95236 : ACGA---TAAC-CCA-TTGA-GCTCATTTGC---GTGGTTG-G-----------AAAA-----AT-C-TT-TTTCGCGT-T--TA-TAAA-CGCG---AAAC
gi|95237 : ACGA---AAAC-CCA-CTGA-ACTCATTTTC---GTGT--CTGAAAA-A----AA------------------TCGCG--T--TA-A-TA-CACG---AAAATT
gi|95238 : ACGA---GAGC-CCA-TTGA-GCCTATTTTC---GTAGC-A-GAAAA-A----TAAAA-----ATAA-AT-TCCCGC
gi|95239 : CGA---AAGC-CAA-TCGA-GCTCATTTTC---GTAG--A-GAAAATA----AAAAA-----ATA--TT-GTTCGCG--T--TA-T-TA-CGCG---AAATTT
gi|95240 : A---AAGC-CCA-TTAG-GCTCATT--C---GTAG--ATGAAAA---------AA-----ATA--TT-CTCCGCGA-T--TA-T-TA-CGCG---AGACCT
gi|95241 : ---AAGC-CCA-T-GA-GCTCATTTTT---GTAG--A-GAAAA-A----AAAAA-----AT---TT-TTTCGCG--T--TA-T-TA-CGCG---AAAATT
gi|95242 : AGC-CCA-CTGA-GCTCATTTTC---GGAGT-T-GAAAA-A----TAAAA-----TTA---T-TTTCGCG--T--TA-T-AC-CGCG---CAACTT
Alignments
lowQualScore : 1111 111
lowQualScore : 444 2 2 2 666 6666 0 2 55555 66666 444 2 99 33 2 2 2 444
lowQualScore : ... . . . ... .... . . ..... ..... ... . .. .. . . . ...
lowQualScore : 777 5 5 5 999 6666 5 5 66666 22222 888 5 00 77 7 7 7 777
consensus : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
Reference ( family-872 ) : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95227 : TACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTAG--ACAAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95228 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG----TCAAA-A----ATAAA-----ATAT-TT-TTT-GCG--T--TA-T-TA-CGCG---AAACTT
gi|95229 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-G-AAA-A----AAAAT-----ATAT-TT-TTTCGCGAAT--TA----A-CGCG---AAACTT
gi|95230 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAGAA-A----AAAAA-----CCA--TT-TTTCGCG--T--TA-T-TA-CGCC---GAACTT
gi|95231 : TACGA---AAGC-CCA-TTGA-GCTAATTTTTA--GTAG--AAGAA-A-A----AAAAA-----ATAT-TTGTGTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95232 : TACGACTCAGAC-CCAGTTGACGCTCATTTTTATGGTAG--A-CGCAA-A----CAAAATAGTTATAA-TT-TTTCGCG--T--TA-T-TA-CGCGAATAAACTT
gi|95233 : TACGA---AAGC-C-A-TTGA-GCTCATTT-C---GTAG--A-GAAAA-ATTTT-----------TTT-TT-TTTCGCT--T--TA-T-TA-CGCG----AACTT
gi|95234 : ACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTA---A-GGGAA-A----AAAAA-----ATATATT-TTTCGCG--A--TATT-TACCGCG---AAACTT
gi|95235 : ACGA---AAGGGCCA-TTGA-G-TCATTTTC---GTAG--A-GAAAA-A----AAAAT-----ATAA-TT-CTTGCCG--TTGTA-T-TA-CGCG---AAATTT
gi|95236 : ACGA---TAAC-CCA-TTGA-GCTCATTTGC---GTGGTTG-G-----------AAAA-----AT-C-TT-TTTCGCGT-T--TA-TAAA-CGCG---AAAC
gi|95237 : ACGA---AAAC-CCA-CTGA-ACTCATTTTC---GTGT--CTGAAAA-A----AA------------------TCGCG--T--TA-A-TA-CACG---AAAATT
gi|95238 : ACGA---GAGC-CCA-TTGA-GCCTATTTTC---GTAGC-A-GAAAA-A----TAAAA-----ATAA-AT-TCCCGC
gi|95239 : CGA---AAGC-CAA-TCGA-GCTCATTTTC---GTAG--A-GAAAATA----AAAAA-----ATA--TT-GTTCGCG--T--TA-T-TA-CGCG---AAATTT
gi|95240 : A---AAGC-CCA-TTAG-GCTCATT--C---GTAG--ATGAAAA---------AA-----ATA--TT-CTCCGCGA-T--TA-T-TA-CGCG---AGACCT
gi|95241 : ---AAGC-CCA-T-GA-GCTCATTTTT---GTAG--A-GAAAA-A----AAAAA-----AT---TT-TTTCGCG--T--TA-T-TA-CGCG---AAAATT
gi|95242 : AGC-CCA-CTGA-GCTCATTTTC---GGAGT-T-GAAAA-A----TAAAA-----TTA---T-TTTCGCG--T--TA-T-AC-CGCG---CAACTT
blockSeqs : CTC G G C ATG TTG T TTTT TAGTT ATA G AA TG T A C AAT
blockSeqs : . . . . A AA . A . AT . T . . . . .
blockSeqs : . . . . . CT . A . AT . A . . . . .
blockSeqs : . . . . . CA . A . AT . . . . . . .
blockSeqs : . . . . . AT . A . AA . . . . . . .
blockSeqs : . . . . . TT . C . TT . . . . . . .
blockSeqs : . . . . . A . A . AA . . . . . . .
blockSeqs : . . . . . A . A . AA . . . . . . .
blockSeqs : . . . . . A . A . A . . . . . . .
blockSeqs : . . . . . A . T . C . . . . . . .
blockSeqs : . . . . . A . A . A . . . . . . .
blockSeqs : . . . . . A . A . A . . . . . . .
blockSeqs : . . . . . A . T . A . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : A***
originalCons : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
finalCons : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAGA---GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
Alignments
lowQualScore : 1111 111
lowQualScore : 444 2 2 2 666 6666 0 2 55555 66666 444 2 99 33 2 2 2 444
lowQualScore : ... . . . ... .... . . ..... ..... ... . .. .. . . . ...
lowQualScore : 777 5 5 5 999 6666 5 5 66666 22222 888 5 00 77 7 7 7 777
consensus : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
Reference ( family-872 ) : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95227 : TACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTAG--ACAAAAA-A----AAAAA-----ATAT-TT-TTTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95228 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG----TCAAA-A----ATAAA-----ATAT-TT-TTT-GCG--T--TA-T-TA-CGCG---AAACTT
gi|95229 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-G-AAA-A----AAAAT-----ATAT-TT-TTTCGCGAAT--TA----A-CGCG---AAACTT
gi|95230 : TACGA---AAGC-CCA-TTGA-GCTCATTTTC---GTAG--A-GAGAA-A----AAAAA-----CCA--TT-TTTCGCG--T--TA-T-TA-CGCC---GAACTT
gi|95231 : TACGA---AAGC-CCA-TTGA-GCTAATTTTTA--GTAG--AAGAA-A-A----AAAAA-----ATAT-TTGTGTCGCG--T--TA-T-TA-CGCG---AAACTT
gi|95232 : TACGACTCAGAC-CCAGTTGACGCTCATTTTTATGGTAG--A-CGCAA-A----CAAAATAGTTATAA-TT-TTTCGCG--T--TA-T-TA-CGCGAATAAACTT
gi|95233 : TACGA---AAGC-C-A-TTGA-GCTCATTT-C---GTAG--A-GAAAA-ATTTT-----------TTT-TT-TTTCGCT--T--TA-T-TA-CGCG----AACTT
gi|95234 : ACGA---AA-C-CCA-TTGA-GCTCATTTTC---GTA---A-GGGAA-A----AAAAA-----ATATATT-TTTCGCG--A--TATT-TACCGCG---AAACTT
gi|95235 : ACGA---AAGGGCCA-TTGA-G-TCATTTTC---GTAG--A-GAAAA-A----AAAAT-----ATAA-TT-CTTGCCG--TTGTA-T-TA-CGCG---AAATTT
gi|95236 : ACGA---TAAC-CCA-TTGA-GCTCATTTGC---GTGGTTG-G-----------AAAA-----AT-C-TT-TTTCGCGT-T--TA-TAAA-CGCG---AAAC
gi|95237 : ACGA---AAAC-CCA-CTGA-ACTCATTTTC---GTGT--CTGAAAA-A----AA------------------TCGCG--T--TA-A-TA-CACG---AAAATT
gi|95238 : ACGA---GAGC-CCA-TTGA-GCCTATTTTC---GTAGC-A-GAAAA-A----TAAAA-----ATAA-AT-TCCCGC
gi|95239 : CGA---AAGC-CAA-TCGA-GCTCATTTTC---GTAG--A-GAAAATA----AAAAA-----ATA--TT-GTTCGCG--T--TA-T-TA-CGCG---AAATTT
gi|95240 : A---AAGC-CCA-TTAG-GCTCATT--C---GTAG--ATGAAAA---------AA-----ATA--TT-CTCCGCGA-T--TA-T-TA-CGCG---AGACCT
gi|95241 : ---AAGC-CCA-T-GA-GCTCATTTTT---GTAG--A-GAAAA-A----AAAAA-----AT---TT-TTTCGCG--T--TA-T-TA-CGCG---AAAATT
gi|95242 : AGC-CCA-CTGA-GCTCATTTTC---GGAGT-T-GAAAA-A----TAAAA-----TTA---T-TTTCGCG--T--TA-T-AC-CGCG---CAACTT