lowQualScore : 5 3 33 555 1 2 2 2 888 2 2 33 2 2 5 5 0
lowQualScore : . . .. ... . . . . ... . . .. . . . . .
lowQualScore : 4 1 99 000 9 9 9 9 111 7 7 77 7 7 3 3 2
consensus : AACAATAT-CATT--TT---AAG-AC-TG-GG--GAGTTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
Reference ( gi|105135 ) : AATAATAT-CATT--TT---AAG-AC-TG-GG--AAGTTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105136 : AACAATAT-CATT--T----AAG-AC-TG-GG--GAGTTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
gi|105137 : AAAAATAT-AATT--TT---AAG-AC-TG-GG--GAGCTGG-C-C--G-T-GGT-TTGAC-AAACAAATCGA
gi|105138 : AACAATAT-CATT--TTCACAGA-AC-TG-GG----GGTGG-C-C--G-T-GGT-TCGTCAAAACAAATCGAG
gi|105139 : AACAATAT-CATT--TT---AAA-CT-TGTGG--GAGTTGG-C-C--G-T-GGT-TCGTC-AA
gi|105142 : AACAATATTCATTCTTT---AAG--C-TG-GG--A-GTTGGGC-C--G-T-GGT-TCGTC-AAACAAA
gi|105140 : AACAATAT-AATT--TT---ATG-AC-TT-GG--GATTTGG-C-C--GCT-AGTGTCGTC-AAACAAATCGAG
gi|105141 : TAATAT--ATT---------G-AC-TG-AG--GAGTTG--C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105144 : aacAATAT-CATT--TT---AAG-AC-AG-GG--GAGTTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105146 : cAATAT-CGTT--TT---AAG-AC-TG-GG--GAGTTGA-C-C--G-T-GGT-TCGTC-AAACACACCGAG
gi|105147 : AAAAT-CACT--TT---AAG-AC-TG-GG--AAGTTGG-C-C--G-T-GGT-TCGTC-
gi|105148 : AATAT-CATT-------GGG-ATATG-GG--AAGTTGA-C-C--A-G-GGT-TCGTC-AAACAAACCGAG
gi|105145 : AATAT-CATT--TT---AAGTAC-TG-GGGCAGATTGG-C-CCGG-TTGGTCTCGTC-AAACAAATCGAG
gi|105143 : cACAT-CATT--TT---ACG-AC-TG-GG--GAGTTGG---C--G-T-GGT-TCGTC-
gi|105149 : accATT--TT---A-G-AC-TC-GG--GAGTTGG-CTC--G-T-G-T-TCGTCAAAACAAATCGAG
gi|105150 : AGTTGG-C-C--G-T-AGT-TCGTC-AAACAAATCGAG
Alignments
lowQualScore : 2 2 33 444 1 2 2 2 2 2 2 2 33 2 2 5 5
lowQualScore : . . .. ... . . . . . . . . .. . . . .
lowQualScore : 9 9 77 777 2 7 7 7 5 5 5 5 44 5 5 0 0
consensus : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
Reference ( family-869 ) : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
gi|105135 : AAT-AATAT-CATT--TT---AAG-AC-TG-GGA-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105136 : AAC-AATAT-CATT--T----AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
gi|105137 : AAA-AATAT-AATT--TT---AAG-AC-TG-GGG-AG-CTGG-C-C--G-T-GGT-TTGAC-AAACAAATCGA
gi|105138 : AAC-AATAT-CATT--TTCACAGA-AC-TG-GGG-G---TGG-C-C--G-T-GGT-TCGTCAAAACAAATCGAG
gi|105139 : AAC-AATAT-CATT--TT---AAA-CT-TGTGGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AA
gi|105140 : AAC-AATAT-AATT--TT---ATG-AC-TT-GGG-AT-TTGG-C-C--GCT-AGTGTCGTC-AAACAAATCGAG
gi|105141 : AACTAATAT--ATT---------G-AC-TG-AGG-AG-TTG--C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105142 : AAC-AATATTCATTCTTT---AAG--C-TG-GG--AG-TTGGGC-C--G-T-GGT-TCGTC-AAACAAA
gi|105143 : AC-CACAT-CATT--TT---ACG-AC-TG-GGG-AG-TTGG---C--G-T-GGT-TCGTC-
gi|105144 : C-AATAT-CATT--TT---AAG-AC-AG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105145 : C-AATAT-CATT--TT---AAGTAC-TG-GGGCAGATTGG-C-CCGG-TTGGTCTCGTC-AAACAAATCGAG
gi|105146 : -AATAT-CGTT--TT---AAG-AC-TG-GGG-AG-TTGA-C-C--G-T-GGT-TCGTC-AAACACACCGAG
gi|105147 : -AAAAT-CACT--TT---AAG-AC-TG-GGA-AG-TTGG-C-C--G-T-GGT-TCGTC-
gi|105148 : -AATAT-CATT-------GGG-ATATG-GGA-AG-TTGA-C-C--A-G-GGT-TCGTC-AAACAAACCGAG
gi|105149 : ATT--TT---A-G-AC-TC-GGG-AG-TTGG-CTC--G-T--GT-TCGTCAAAACAAATCGAG
gi|105150 : G-AG-TTGG-C-C--G-T-AGT-TCGTC-AAACAAATCGAG
Alignments
lowQualScore : 2 2 33 444 1 2 2 2 2 2 2 2 33 2 2 5 5
lowQualScore : . . .. ... . . . . . . . . .. . . . .
lowQualScore : 9 9 77 777 2 7 7 7 5 5 5 5 44 5 5 0 0
consensus : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
Reference ( family-869 ) : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
gi|105135 : AAT-AATAT-CATT--TT---AAG-AC-TG-GGA-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105136 : AAC-AATAT-CATT--T----AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
gi|105137 : AAA-AATAT-AATT--TT---AAG-AC-TG-GGG-AG-CTGG-C-C--G-T-GGT-TTGAC-AAACAAATCGA
gi|105138 : AAC-AATAT-CATT--TTCACAGA-AC-TG-GGG-G---TGG-C-C--G-T-GGT-TCGTCAAAACAAATCGAG
gi|105139 : AAC-AATAT-CATT--TT---AAA-CT-TGTGGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AA
gi|105140 : AAC-AATAT-AATT--TT---ATG-AC-TT-GGG-AT-TTGG-C-C--GCT-AGTGTCGTC-AAACAAATCGAG
gi|105141 : AACTAATAT--ATT---------G-AC-TG-AGG-AG-TTG--C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105142 : AAC-AATATTCATTCTTT---AAG--C-TG-GG--AG-TTGGGC-C--G-T-GGT-TCGTC-AAACAAA
gi|105143 : AC-CACAT-CATT--TT---ACG-AC-TG-GGG-AG-TTGG---C--G-T-GGT-TCGTC-
gi|105144 : C-AATAT-CATT--TT---AAG-AC-AG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105145 : C-AATAT-CATT--TT---AAGTAC-TG-GGGCAGATTGG-C-CCGG-TTGGTCTCGTC-AAACAAATCGAG
gi|105146 : -AATAT-CGTT--TT---AAG-AC-TG-GGG-AG-TTGA-C-C--G-T-GGT-TCGTC-AAACACACCGAG
gi|105147 : -AAAAT-CACT--TT---AAG-AC-TG-GGA-AG-TTGG-C-C--G-T-GGT-TCGTC-
gi|105148 : -AATAT-CATT-------GGG-ATATG-GGA-AG-TTGA-C-C--A-G-GGT-TCGTC-AAACAAACCGAG
gi|105149 : ATT--TT---A-G-AC-TC-GGG-AG-TTGG-CTC--G-T--GT-TCGTCAAAACAAATCGAG
gi|105150 : G-AG-TTGG-C-C--G-T-AGT-TCGTC-AAACAAATCGAG
blockSeqs : T T CT CAC A T A T C A G T CG C T G A
blockSeqs : . . . . A . . . . . . . . . . C A
blockSeqs : . . . . G . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
finalCons : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
Alignments
lowQualScore : 2 2 33 444 1 2 2 2 2 2 2 2 33 2 2 5 5
lowQualScore : . . .. ... . . . . . . . . .. . . . .
lowQualScore : 9 9 77 777 2 7 7 7 5 5 5 5 44 5 5 0 0
consensus : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
Reference ( family-869 ) : AAC-AATAT-CATT--TT---AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
gi|105135 : AAT-AATAT-CATT--TT---AAG-AC-TG-GGA-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105136 : AAC-AATAT-CATT--T----AAG-AC-TG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAATCGAG
gi|105137 : AAA-AATAT-AATT--TT---AAG-AC-TG-GGG-AG-CTGG-C-C--G-T-GGT-TTGAC-AAACAAATCGA
gi|105138 : AAC-AATAT-CATT--TTCACAGA-AC-TG-GGG-G---TGG-C-C--G-T-GGT-TCGTCAAAACAAATCGAG
gi|105139 : AAC-AATAT-CATT--TT---AAA-CT-TGTGGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AA
gi|105140 : AAC-AATAT-AATT--TT---ATG-AC-TT-GGG-AT-TTGG-C-C--GCT-AGTGTCGTC-AAACAAATCGAG
gi|105141 : AACTAATAT--ATT---------G-AC-TG-AGG-AG-TTG--C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105142 : AAC-AATATTCATTCTTT---AAG--C-TG-GG--AG-TTGGGC-C--G-T-GGT-TCGTC-AAACAAA
gi|105143 : AC-CACAT-CATT--TT---ACG-AC-TG-GGG-AG-TTGG---C--G-T-GGT-TCGTC-
gi|105144 : C-AATAT-CATT--TT---AAG-AC-AG-GGG-AG-TTGG-C-C--G-T-GGT-TCGTC-AAACAAACCGAG
gi|105145 : C-AATAT-CATT--TT---AAGTAC-TG-GGGCAGATTGG-C-CCGG-TTGGTCTCGTC-AAACAAATCGAG
gi|105146 : -AATAT-CGTT--TT---AAG-AC-TG-GGG-AG-TTGA-C-C--G-T-GGT-TCGTC-AAACACACCGAG
gi|105147 : -AAAAT-CACT--TT---AAG-AC-TG-GGA-AG-TTGG-C-C--G-T-GGT-TCGTC-
gi|105148 : -AATAT-CATT-------GGG-ATATG-GGA-AG-TTGA-C-C--A-G-GGT-TCGTC-AAACAAACCGAG
gi|105149 : ATT--TT---A-G-AC-TC-GGG-AG-TTGG-CTC--G-T--GT-TCGTCAAAACAAATCGAG
gi|105150 : G-AG-TTGG-C-C--G-T-AGT-TCGTC-AAACAAATCGAG