lowQualScore : 2222222222
lowQualScore : 5 5 3 33 33 4444444444 2 2
lowQualScore : . . . .. .. .......... . .
lowQualScore : 3 3 1 77 77 7777777777 7 7
consensus : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGT--TGC------TT--TTA-TTTGGAGAATTTA-TATTT
Reference ( gi|109467 ) : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGT--TGC------TG--TTA-TTTGGAGAATTTA-TATTT
gi|109466 : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGTTATGT------T---TTA-TTTGGAGAATTTA-TATTT
gi|109470 : TCTTTGAAA-TAAA-CAACAATTGAAT--TTTTGC--TGC------TT--TTA-TTTGGAAAATTTA-TATTTt
gi|109473 : TCTTT--AA-TAAA-CGACAATTGAAT--TATTGT--TGC------T---TTA-TTTGGAGAATTTATTATTTt
gi|109471 : TTTTTTAAA-TAAA-CGACAACTGAAT--TATTGT--TGC------TT--TTA--TTGAAGAATTTA-TATTTt
gi|109478 : TTTTTGAAA-TAAAACAACAATTGAAT--TAT-GT---GC------TA--TTA-TTTGGAGAATTTA-TATTTt
gi|109474 : TCTTTGAAA-TAAA-CGACATTTGATT--TATTGT--TGCCT----TT--TTA-TTGGGAGAATTTA-TATt
gi|109472 : TTTTTGAAAATAAA-CGACAATTGAATTATATTGT--TGCT-----TT--TTATTTTGGAGAATTTA-TATTT
gi|109476 : TTTTTGAAAATAAAACGACAATTGAAT---ATTGT--TGC------TT--TTA-TTTGAAGGATTTA-TATTT
gi|109475 : TCTTTGAAA-TAAT-CGACAATTGATT--GATTGT--TGC------TT--TTA-CTGAGAGAATTTA-TATTt
gi|109468 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTT--TAC------TT--TTA-ATTGGAGAATGTA-TACT
gi|109477 : TCTATGAAA-TAAA-CGACAATTGATT--TATTGT--AGT------TT--TCA-TTGGGAGAATTTA-TATT
gi|109469 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTT--TAC------TT--CTA-ATTGGAGAATGTA-TATct
gi|109479 : TCTATGTAA-TAAA-CGACAATTGATT--TATTGT--TGT------TC--TTA-CTTGGAGAATTCG-TATTatt
gi|109480 : CTCTGAAA-TAAG-CGTCAATTGATT--TATTGT--TACTTTTATTGATTTA-TTGGGAGAATTTA-TAct
gi|109481 : GAAA-TAAA-CGACCATTGAAT--TATAGT--TGC------TT--TTA-TTTGGAAAATTTA-TATTT
Alignments
lowQualScore : 5 5 1 33 88 2 33 777777 2
lowQualScore : . . . .. .. . .. ...... .
lowQualScore : 0 0 0 44 44 5 44 222222 5
consensus : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
Reference ( family-863 ) : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
gi|109466 : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGTTATG-TTTTA-TT--T------GGAGAATTTA-TATTT
gi|109467 : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGTTGC--TGTTA-TT--T------GGAGAATTTA-TATTTt
gi|109468 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTTTAC--TTTTA-AT--T------GGAGAATGTA-TACT
gi|109469 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTTTAC--TTCTA-AT--T------GGAGAATGTA-TAT
gi|109470 : TCTTTGAAA-TAAA-CAACAATTGAAT--TTTTGCTGC--TTTTA-TT--T------GGAAAATTTA-TATTTatt
gi|109471 : TTTTTTAAA-TAAA-CGACAACTGAAT--TATTGTTGC--TTTTA--T--T------GAAGAATTTA-TATTTt
gi|109472 : TTTTTGAAAATAAA-CGACAATTGAATTATATTGTTGCT-TTTTATTT--T------GGAGAATTTA-TATTTt
gi|109473 : TCTTT--AA-TAAA-CGACAATTGAAT--TATTGTTGC---TTTA-TT--T------GGAGAATTTATTATTT
gi|109474 : TCTTTGAAA-TAAA-CGACATTTGATT--TATTGTTGCCTTTTTA-TT--G------GGAGAATTTA-TATt
gi|109475 : TCTTTGAAA-TAAT-CGACAATTGATT--GATTGTTGC--TTTTA-CT--G------AGAGAATTTA-TATT
gi|109476 : TTTTTGAAAATAAAACGACAATTGAAT---ATTGTTGC--TTTTA-TT--T------GAAGGATTTA-TATTT
gi|109477 : TCTATGAAA-TAAA-CGACAATTGATT--TATTGTAGT--TTTCA-TT--G------GGAGAATTTA-TATTt
gi|109478 : TTTTTGAAA-TAAAACAACAATTGAAT--TAT-GT-GC--TATTA-TT--T------GGAGAATTTA-TATTTct
gi|109479 : TCTATGTAA-TAAA-CGACAATTGATT--TATTGTTGT--TCTTA-CT--T------GGAGAATTCG-TATTt
gi|109480 : CTCTGAAA-TAAG-CGTCAATTGATT--TATTGTTAC--TTTTA-TTGATTTATTGGGAGAATTTA-TAct
gi|109481 : GAAA-TAAA-CGACCATTGAAT--TATAGTTGC--TTTTA-TT--T------GGAAAATTTA-TATTT
Alignments
lowQualScore : 5 5 1 33 88 2 33 777777 2
lowQualScore : . . . .. .. . .. ...... .
lowQualScore : 0 0 0 44 44 5 44 222222 5
consensus : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
Reference ( family-863 ) : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
gi|109466 : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGTTATG-TTTTA-TT--T------GGAGAATTTA-TATTT
gi|109467 : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGTTGC--TGTTA-TT--T------GGAGAATTTA-TATTTt
gi|109468 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTTTAC--TTTTA-AT--T------GGAGAATGTA-TACT
gi|109469 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTTTAC--TTCTA-AT--T------GGAGAATGTA-TAT
gi|109470 : TCTTTGAAA-TAAA-CAACAATTGAAT--TTTTGCTGC--TTTTA-TT--T------GGAAAATTTA-TATTTatt
gi|109471 : TTTTTTAAA-TAAA-CGACAACTGAAT--TATTGTTGC--TTTTA--T--T------GAAGAATTTA-TATTTt
gi|109472 : TTTTTGAAAATAAA-CGACAATTGAATTATATTGTTGCT-TTTTATTT--T------GGAGAATTTA-TATTTt
gi|109473 : TCTTT--AA-TAAA-CGACAATTGAAT--TATTGTTGC---TTTA-TT--T------GGAGAATTTATTATTT
gi|109474 : TCTTTGAAA-TAAA-CGACATTTGATT--TATTGTTGCCTTTTTA-TT--G------GGAGAATTTA-TATt
gi|109475 : TCTTTGAAA-TAAT-CGACAATTGATT--GATTGTTGC--TTTTA-CT--G------AGAGAATTTA-TATT
gi|109476 : TTTTTGAAAATAAAACGACAATTGAAT---ATTGTTGC--TTTTA-TT--T------GAAGGATTTA-TATTT
gi|109477 : TCTATGAAA-TAAA-CGACAATTGATT--TATTGTAGT--TTTCA-TT--G------GGAGAATTTA-TATTt
gi|109478 : TTTTTGAAA-TAAAACAACAATTGAAT--TAT-GT-GC--TATTA-TT--T------GGAGAATTTA-TATTTct
gi|109479 : TCTATGTAA-TAAA-CGACAATTGATT--TATTGTTGT--TCTTA-CT--T------GGAGAATTCG-TATTt
gi|109480 : CTCTGAAA-TAAG-CGTCAATTGATT--TATTGTTAC--TTTTA-TTGATTTATTGGGAGAATTTA-TAct
gi|109481 : GAAA-TAAA-CGACCATTGAAT--TATAGTTGC--TTTTA-TT--T------GGAAAATTTA-TATTT
blockSeqs : A A A TA CT T GA TTATTG T
blockSeqs : A A T . T . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . A . . . . . .
blockSeqCons : **
originalCons : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
finalCons : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
Alignments
lowQualScore : 5 5 1 33 88 2 33 777777 2
lowQualScore : . . . .. .. . .. ...... .
lowQualScore : 0 0 0 44 44 5 44 222222 5
consensus : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
Reference ( family-863 ) : TCTTTGAAA-TAAA-CGACAATTGANT--TATTGTTGC--TTTTA-TT--T------GGAGAATTTA-TATTT
gi|109466 : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGTTATG-TTTTA-TT--T------GGAGAATTTA-TATTT
gi|109467 : TCTTTGAAA-TAAA-CGACAATTGAAT--TATTGTTGC--TGTTA-TT--T------GGAGAATTTA-TATTTt
gi|109468 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTTTAC--TTTTA-AT--T------GGAGAATGTA-TACT
gi|109469 : TCTTTGAAA-TAAA-CGACAATTGATT--TATTTTTAC--TTCTA-AT--T------GGAGAATGTA-TAT
gi|109470 : TCTTTGAAA-TAAA-CAACAATTGAAT--TTTTGCTGC--TTTTA-TT--T------GGAAAATTTA-TATTTatt
gi|109471 : TTTTTTAAA-TAAA-CGACAACTGAAT--TATTGTTGC--TTTTA--T--T------GAAGAATTTA-TATTTt
gi|109472 : TTTTTGAAAATAAA-CGACAATTGAATTATATTGTTGCT-TTTTATTT--T------GGAGAATTTA-TATTTt
gi|109473 : TCTTT--AA-TAAA-CGACAATTGAAT--TATTGTTGC---TTTA-TT--T------GGAGAATTTATTATTT
gi|109474 : TCTTTGAAA-TAAA-CGACATTTGATT--TATTGTTGCCTTTTTA-TT--G------GGAGAATTTA-TATt
gi|109475 : TCTTTGAAA-TAAT-CGACAATTGATT--GATTGTTGC--TTTTA-CT--G------AGAGAATTTA-TATT
gi|109476 : TTTTTGAAAATAAAACGACAATTGAAT---ATTGTTGC--TTTTA-TT--T------GAAGGATTTA-TATTT
gi|109477 : TCTATGAAA-TAAA-CGACAATTGATT--TATTGTAGT--TTTCA-TT--G------GGAGAATTTA-TATTt
gi|109478 : TTTTTGAAA-TAAAACAACAATTGAAT--TAT-GT-GC--TATTA-TT--T------GGAGAATTTA-TATTTct
gi|109479 : TCTATGTAA-TAAA-CGACAATTGATT--TATTGTTGT--TCTTA-CT--T------GGAGAATTCG-TATTt
gi|109480 : CTCTGAAA-TAAG-CGTCAATTGATT--TATTGTTAC--TTTTA-TTGATTTATTGGGAGAATTTA-TAct
gi|109481 : GAAA-TAAA-CGACCATTGAAT--TATAGTTGC--TTTTA-TT--T------GGAAAATTTA-TATTT