lowQualScore : 1 111111 1 33333333 11111111111111 1 222222 1 11 11 22222 11111
lowQualScore : 0 4 111111 66 8 888 4 4 7 999 4 33333333 4 4 55 777 3 3 3 3 999999 44 1 99999999999999 6 0 6666 3 3 55 2 4 99 111111 4 55 1 4 4 4 1 7 3 3 3 1 0 3 44 77 3 11 5 55 66666 55 55 3 77777 4 55 4
lowQualScore : . . ...... .. . ... . . . ... . ........ . . .. ... . . . . ...... .. . .............. . . .... . . .. . . .. ...... . .. . . . . . . . . . . . . .. .. . .. . .. ..... .. .. . ..... . .. .
lowQualScore : 0 4 888888 11 9 222 4 4 8 222 0 88888888 0 0 55 000 6 3 3 3 666666 00 4 00000000000000 0 5 8888 6 6 00 5 0 55 111111 0 55 5 0 0 0 8 5 6 6 6 0 2 6 44 55 6 77 1 22 66666 00 00 6 33333 0 55 0
consensus : ATGCAGGTAAC-AAAAAA-ATC--GG-A--AAG-AAAT-GGTAA-TG-GCT-ACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC--AT--NCCAAAT-C-GCGACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTG-AAN-TTCTCAAAAAA-TATGCTATTNATANGTACA-TGTACA--T--GTATG-CAGCAACG---CNAC-AATAAT--TCATAAAT-GTTT
Reference ( gi|18447 ) : ATGCAGGTAAC-AAAAAA-ATC--AG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC--AT--CCCAAAT-C-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTG-AAT-TTCTCAAAAAA-TAAGCTATTCATAAGTACA-TGTACA--T--GTATG-CAGCAACG---TAAC-AATAAT--TTATAAAT-GTTT
gi|18448 : ATGCAGGTAAC-AAAAAA-ATC--AG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGGAAAGGAGATAC--AT--CCC-AAT-CAACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTG-AAT-TTCTTCAAAAA-TAAGCTATTCATAAGTACA-TGTACA--T--GTATG-CAGCAACG---TAAC-AATAAT--TTATAAAT-GTTT
gi|18449 : ATGCAGGTAAC-AAAAAA-ATC--AG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTTGGGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAG-AAAATTAAGATTGT--T-GGAAAAG-CA--GGTAAAAACGG-AAGGAGATAC--AT--CCC-AAT-C-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTG-AAT-TTCTCAAAAAA-TAAGCTATTCATAAGTACA-TGTACA--T--GTATG-CCGCAACG---TAAC-AATAAT--TTATAAAT-GTTT
gi|18450 : ATGCAGGTAACTAAAACACATC--AG-ACAAAG-AAATCGGTAA-TG-GCTGACGA-TTAAA-CTGA-CCT--TCATCTCGCTCCACTT-GGT--AC----GTTTGGA-TTTC-TA--TACGAATT---------TATCTAAATGATAAGAAAACTGAAGAAAAATTAAGATGTT--T-GG-AAA--CA--GGAAAAAACGG-AAGGAGA-AC--A----CCAAATTC-ACAATG-TT-G-TTCTCACGCAAAGGTTTACCGATCTATATTA-TAATGGG-AA--TTCTCAAAAAATTAAGC-ATCAATAAG-ACATTGTACA--TTGATATGCCAGCAAC----CAAC-AATAAT--TTATAAATCGTTT
gi|18451 : TAAA-AACAAA-ATC--GGGA--AAG-AAAT-AGTAA-TG-GTCTATTT-TCAAA-ATGA-A-T--ACATCT-GCTCCACTT-GGT--AT---TGCTTT-A-ATTA-TAACTAC-AATT------A
gi|18452 : AAAAA-AT---------GAG-AAAT-G--AA-TG-CCT-ACA---TAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-AATTTC-TAATTAC-AATT------AATTAT-TAATTGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT--AT--TC-AAAT-C-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTG-AAA-TTCTCACAAAA-T-AGTTATTCAT---TATA-AGT-CA--T--GTATG-CAGCAATG---CTAC-AA-AATTATTCTAAAT-GTTT
gi|18453 : AAAAA-ATTTGAG-A--AAG-AA---------TG-CCT-AC-A-TAAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAA-TGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT--AT--TCCAA-T-C-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTG-AA--TTCTCACAAAA-T-TGTTATTCAT---TATA-AGT--A--T--GTATG-CAGCAATGCTACAAA-AATTAT--TCATAAAT-GTTT
gi|18454 : AAAAC-ATG--GG-A--AAGGAAAT-AGTAAATG-GTCTACAAGTTAAA-ATGA-A-TAAT-ATCT-GTTCCACTT-G-C--AT---TATTT--A-TTTCCTAAT-AC-ATCT------AATCAT-TCAA----------AATGAA-AAAAATCAAGACTGT--TTGG-AAAG-CA--G-TAAATA-GG-AAGGCAGGGC--AT--GCATAAT-C-GCGACG-TT-G-TTC----GCAAGTG-TTA-CGAT-TAT--CATTAATGCGAAAT-TTCTC-ACAAA-TATGCTATTAATATATACA---CACA--T--GTATG-CAGCAATG---T-AC-AATAAT--TCATAAA--GTTT
gi|18455 : AAAA-ATT--GG-A--AAGCAAAT-ATAAA-TGCGCT-ACAA-TTAAATATGATA-T----ATCT-GTTCCACTT-GGCCCACATATATTTT-A-TTTC-CAAT-AC-AATT------AATTAT-CAAATGA--AGAA--------AAAAATAAAGACTGTTCT-GG-AAAGCCACCAGTTAAAACGG-AAGGAGAGGTA-ATGGCATAATT-C-GCGACGTTT-G-T----GCGCATGTG-TTA-CGAT-TA---TATTAATGCG-AACATTCTC-ACAAA-TATGCTATTAATATATACA---CACGATT--GTATG-
gi|18456 : AAA-ATT--GGGA--AAG-AAA---ATAA-TG-GTT--CAA-TTAAA-ATGA-A-TAAT-ACTT-GTTCCAAAT-TGC--AT---TGTTTT-A-TTC---AATTA--AATT------AATTAT--------------AAATGAA-AAAAATAAAGATTGT----GG-AAAG-CA--GGT-AAAACGG-AAGGA-AGGCAGAT------AAT-C-GCGACG-TTAG-TT----CGC---TG-TTA-CGAT---TATTATTAATCGA-AAT-TTCT--AAAAA-T--GCTATTAATATATAC------CA--T--GT-TG-CAGCAATG---CTACAAATA----TTCTAAAT-GTTT
gi|18457 : AAA-ATGA-C-T--ATACCT-GCTTCACTT-GGT--AC---TGTTTT-A-ATGA-TAATTAC-AATTATGAACAATTAT-GAAAT
gi|18458 : TTTT-A-TTTC-TAATTAC-AATT------AATCAT-TAAGTGA--A-------GAACAAAAATTAAGACTGT--C-GA-AATG-CA--GGTAAAA--GG-AAGGAGAGAC--AT--GCAAAAT-C-GCAACG-TT-G-TT
gi|18459 : -TTTT-TAATTAC-AATT------AATTAT-CAAATGA--A--------AAGAAAAATTAAGACTGT--T-GG-AAAG-CA--G
gi|18460 : AAAAATTCAGACTGT--C-GA-AATG-CA--GGTAAAAA-GG-AAGGAGGGAC--AT--GCAAAAT-C-GCAACG-TT-GTTTCTCGCGCAAGTG-TTA-CGAT-TAT-TT-TTAATGTG-AAA-TTCTCACAAAA-TATGC------TAAGTACA-TG-A---------ATG-CATTAATGC--TAA--AGTAAT--TCATAAAT-GTTT
gi|18461 : CGCAAGTG-TTA-CGAT-TAT--TATTAATGTG-ACA-TTCTCACAAAT-TATCCTATCAATATATACA-C--ACA--T--GTATT-TAGCAATG---CTAC-AATAAT--TCATAAAT-GTTT
gi|18462 : G-TTA-CGAT-TAT--TATCAATGTG-AAA-TTCTCGCAAAA-TATTCTATTTATAAGTAC-------A--T--GTATG-CAGCAACG---CTAC-AATAAT--CCATAAAT-GTTT
Alignments
lowQualScore : 1 22222222 1 111 11 222222 111
lowQualScore : 8 4 33 8 55 8 44 0 4 4 8 6 666 3 77777777 3 3 55 666 3 3 3 3 888888 3 0 5555555 3 8 4 5555 3 3 44 0 3 3 2 444 7 3 1 3 3 3 2 3 3 3 9 00 3 3 3 3 2 777 000000 44 44 3 1 111 3
lowQualScore : . . .. . .. . .. . . . . . ... . ........ . . .. ... . . . . ...... . . ....... . . . .... . . .. . . . . ... . . . . . . . . . . . .. . . . . . ... ...... .. .. . . ... .
lowQualScore : 0 0 77 0 55 0 88 9 0 0 0 0 444 6 44444444 6 6 00 444 3 1 1 1 888888 3 5 5555555 6 2 8 5555 3 3 66 5 6 6 3 000 3 6 6 6 6 6 1 3 3 3 3 88 3 0 3 8 2 222 444444 66 66 3 0 444 6
consensus : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-G-CTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-CTCANAAAA-TATGCTATTNATANGTACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
Reference ( family-860 ) : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-G-CT-ACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCGACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-NTT-CTCAAAAAA-TATGCTATTNATANGTACA-TGTACA--T--GTATG-CAGCAACGCNAC---AATAATTCATAAAT-GTTT
gi|18447 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-G-CTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATCCCA-AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTCAAAAAA-TAAGCTATTCATAAGTACA-TGTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18448 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-G-CTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGGAAAGGAGATAC-ATCCC--AA-TCAACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTTCAAAAA-TAAGCTATTCATAAGTACA-TGTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18449 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-G-CTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTTGGGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAG-AAAATTAAGATTGT--T-GGAAAAG-CA--GGTAAAAACGG-AAGGAGATAC-ATCCC--AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTCAAAAAA-TAAGCTATTCATAAGTACA-TGTACA--T--GTATG-CCGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18450 : ATGCAGGTAACTAAAACACATCAG-ACAAAG-AAATCGGTAA-TG-G-CTGACGA-TTAAA-CTGA-CCT--TCATCTCGCTCCACTT-GGT--AC----GTTTGGA-TTTC-TA--TACGAATT---------TATCTAAATGATAAGAAAACTGAAGAAAAATTAAGA-TGT--T-TG-GAAA-CA--GGAAAAAACGG-AAGGAGA-AC-A--CCA-AATTC-ACAATG-TT-G-TTCTCACGCAAAGGTTTACCGATCTATATTA-TAATGGGAA--TT-CTCAAAAAATTAAGC-ATCAATAAG-ACATTGTACA--TTGATATGCCAGCAAC-CAAC---AATAATTTATAAATCGTTT
gi|18451 : TAAA-AACAAA-ATCGGGA--AAG-AAAT-AGTAA-TG-GTCT-ATTT-TCAAA-ATGA-A-T--ACATCT-GCTCCACTT-GGT--AT---TGCTTT-A-ATTA-TAACTAC-AATT------A
gi|18452 : AAAAA-AT-------GAG-AAAT-G--AA-TG-C-CT-ACA---TAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-AATTTC-TAATTAC-AATT------AATTAT-TAATTGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTC-A-AA-TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTGAA-ATT-CTCACAAAA-TA-GTTATTCAT---TATA-AGT-CA--T--GTATG-CAGCAATGCTACAA-AATTATTC-TAAAT-GTTT
gi|18453 : AAAAA-ATTTG-A----G-AAA---G-AA-TG-C-CT-AC-A-TAAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAA-TGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTCCA-A--TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTGAA--TT-CTCACAAAA-T-TGTTATTCAT---TATA-AGT--A--T--GTATG-CAGCAATGCTACAAAAATTATTCATAAAT-GTTT
gi|18454 : AAAAC-ATGGG-A--AAGGAAAT-AGTAAATG-GTCT-ACAAGTTAAA-ATGA-A-TAAT-ATCT-GTTCCACTT-G-C--AT---TATTT--A-TTTCCTAAT-AC-ATCT------AATCAT-TCAA----------AATGAA-AAAAATCAAGACTGT--TTGG-AAAG-CA--G-TAAATA-GG-AAGGCAGGGC-ATGCAT-AA-TC-GCGACG-TT-G-TTC----GCAAGTG-TTA-CGAT-TAT--CATTAATGCGAA-ATTTCTCACAAA--TATGCTATTAATATATACA---CACA--T--GTATG-CAGCAATG-TAC---AATAATTCATAAA--GTTT
gi|18455 : AAAA-ATTGG-A--AAGCAAAT-ATAAA-TGCG-CT-ACAA-TTAAATATGATA-T----ATCT-GTTCCACTT-GGCCCACATATATTTT-A-TTTC-CAAT-AC-AATT------AATTAT-CAAATGA--AGAA--------AAAAATAAAGACTGTTCT-GG-AAAGCCACCAGTTAAAACGG-AAGGAGAGGTAATGGCATAATTC-GCGACGTTT-G-T----GCGCATGTG-TTA-CGAT-TA---TATTAATGCGAACATT-CTC-ACAAA-TATGCTATTAATATATACA---CACGATT--GTATG-
gi|18456 : AAA-ATTGGGA--AAG-AAA---ATAA-TG-G-TT--CAA-TTAAA-ATGA-A-TAAT-ACTT-GTTCCAAAT-TGC--AT---TGTTTT-A-TTC---AATTA--AATT------AATTAT--------------AAATGAA-AAAAATAAAGATTGT----GG-AAAG-CA--GGT-AAAACGG-AAGGA-AGGC-AGAT---AA-TC-GCGACG-TTAG-T--TCGC-----TG-TTA-CGAT---TATTATTAAT-CGAA-ATT-TCTAAAA----ATGCTATTAATATATAC------CA--T--GT-TG-CAGCAATGCTAC---AAATATTC-TAAAT-GTTT
gi|18457 : AAA-ATGA-C-T--ATACCT-GCTTCACTT-GGT--AC---TGTTTT-A-ATGA-TAATTAC-AATTATGAACAATTAT-GAAAT
gi|18458 : TTTT-A-TTTC-TAATTAC-AATT------AATCAT-TAAGTGA--A-------GAACAAAAATTAAGACTGT--C-GA-AATG-CA--GGTAAAA--GG-AAGGAGAGAC-ATGCAA-AA-TC-GCAACG-TT-G-TT
gi|18459 : -TTTT-TAATTAC-AATT------AATTAT-CAAATGA--A--------AAGAAAAATTAAGACTGT--T-GG-AAAG-CA--G
gi|18460 : AAAAATTCAGACTGT--C-GA-AATG-CA--GGTAAAAA-GG-AAGGAGGGAC-ATGCAA-AA-TC-GCAACG-TT-GTTTCTCGCGCAAGTG-TTA-CGAT-TAT-TT-TTAATGTGAA-ATT-CTCACAAAA-TATGCTA---A----------GTACA--T--GAATG-CATTAATGCTAA---AGTAATTCATAAAT-GTTT
gi|18461 : CGCAAGTG-TTA-CGAT-TAT--TATTAATGTGAC-ATT-CTCACAAAT-TATCCTATCAATATATACA-C--ACA--T--GTATT-TAGCAATGCTAC---AATAATTCATAAAT-GTTT
gi|18462 : G-TTA-CGAT-TAT--TATCAATGTGAA-ATT-CTCGCAAAA-TATTCTATTTATAAGTAC-------A--T--GTATG-CAGCAACGCTAC---AATAATCCATAAAT-GTTT
Alignments
lowQualScore : 1 22222222 1 111 1111111111 111
lowQualScore : 8 4 33 8 55 8 44 0 4 4 5 666 3 77777777 3 3 55 666 3 3 3 3 888888 3 0 5555555 3 8 4 5555 3 3 44 0 3 3 2 444 7 3 3 3 3 2 3 3 3 9 3 3 1 3 3 2 9999999999 1 44 44 3 0 111 3
lowQualScore : . . .. . .. . .. . . . . ... . ........ . . .. ... . . . . ...... . . ....... . . . .... . . .. . . . . ... . . . . . . . . . . . . . . . . .......... . .. .. . . ... .
lowQualScore : 0 0 77 0 55 0 88 9 0 0 0 444 6 44444444 6 6 00 444 3 1 1 1 888888 3 5 5555555 6 2 8 5555 3 3 66 5 6 6 3 000 3 6 6 6 6 1 3 3 3 3 3 3 0 3 8 2 6666666666 2 66 66 3 5 444 6
consensus : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-CTCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
Reference ( family-860 ) : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-CTCANAAAA-TATGCTATTNATANGTACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
gi|18447 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATCCCA-AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18448 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGGAAAGGAGATAC-ATCCC--AA-TCAACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTTCAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18449 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTTGGGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAG-AAAATTAAGATTGT--T-GGAAAAG-CA--GGTAAAAACGG-AAGGAGATAC-ATCCC--AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CCGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18450 : ATGCAGGTAACTAAAACACATCAG-ACAAAG-AAATCGGTAA-TG-GCTGACGA-TTAAA-CTGA-CCT--TCATCTCGCTCCACTT-GGT--AC----GTTTGGA-TTTC-TA--TACGAATT---------TATCTAAATGATAAGAAAACTGAAGAAAAATTAAGA-TGT--T-TG-GAAA-CA--GGAAAAAACGG-AAGGAGA-AC-A--CCA-AATTC-ACAATG-TT-G-TTCTCACGCAAAGGTTTACCGATCTATATTA-TAATG-GGA-ATT-CTCAAAAAATTAAGC-ATCAATAAG-ACATTGTACA--TTGATATGCCAGCAAC-CAAC---AATAATTTATAAATCGTTT
gi|18451 : TAAA-AACAAA-ATCGGGA--AAG-AAAT-AGTAA-TG-GTCTATTT-TCAAA-ATGA-A-T--ACATCT-GCTCCACTT-GGT--AT---TGCTTT-A-ATTA-TAACTAC-AATT------A
gi|18452 : AAAAA-AT-------GAG-AAAT-G--AA-TG-CCT-ACA---TAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-AATTTC-TAATTAC-AATT------AATTAT-TAATTGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTC-A-AA-TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTGAA-ATT-CTCACAAAA-TA-GTTATTCAT-TATA-A--GT-CA--T--GTATG-CAGCAATGCTACAA-AATTATTC-TAAAT-GTTT
gi|18453 : AAAAA-ATTTG-A----G-AAA---G-AA-TG-CCT-AC-A-TAAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAA-TGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTCCA-A--TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTG-A-ATT-CTCACAAAA-T-TGTTATTCAT-TATA-A--GT--A--T--GTATG-CAGCAATGCTACAAAAATTATTCATAAAT-GTTT
gi|18454 : AAAAC-ATGGG-A--AAGGAAAT-AGTAAATG-GTCTACAAGTTAAA-ATGA-A-TAAT-ATCT-GTTCCACTT-G-C--AT---TATTT--A-TTTCCTAAT-AC-ATCT------AATCAT-TCAA----------AATGAA-AAAAATCAAGACTGT--TTGG-AAAG-CA--G-TAAATA-GG-AAGGCAGGGC-ATGCAT-AA-TC-GCGACG-TT-G-TTC----GCAAGTG-TTA-CGAT-TAT--CATTAATGCGAA-ATTTCTCACAAA--TATGCTATTAATATATACA---CACA--T--GTATG-CAGCAATG-TAC---AATAATTCATAAA--GTTT
gi|18455 : AAAA-ATTGG-A--AAGCAAAT-ATAAA-TGCGCT-ACAA-TTAAATATGATA-T----ATCT-GTTCCACTT-GGCCCACATATATTTT-A-TTTC-CAAT-AC-AATT------AATTAT-CAAATGA--AGAA--------AAAAATAAAGACTGTTCT-GG-AAAGCCACCAGTTAAAACGG-AAGGAGAGGTAATGGCATAATTC-GCGACGTTT-G-T----GCGCATGTG-TTA-CGAT-TA---TATTAATGCGAACATT-CTCAC-AAA-TATGCTATTAATATATACA---CACGATT--GTATG-
gi|18456 : AAA-ATTGGGA--AAG-AAA---ATAA-TG-GTT--CAA-TTAAA-ATGA-A-TAAT-ACTT-GTTCCAAAT-TGC--AT---TGTTTT-A-TTC---AATTA--AATT------AATTAT--------------AAATGAA-AAAAATAAAGATTGT----GG-AAAG-CA--GGT-AAAACGG-AAGGA-AGGC-AGAT---AA-TC-GCGACG-TTAG-T--TCGC-----TG-TTA-CGAT---TATTATTAAT-CGAA-ATT--TC-TAAAA--ATGCTATTAATATATAC------CA--T--GT-TG-CAGCAATGCTAC---AAATATTC-TAAAT-GTTT
gi|18457 : AAA-ATGA-C-T--ATACCT-GCTTCACTT-GGT--AC---TGTTTT-A-ATGA-TAATTAC-AATTATGAACAATTAT-GAAAT
gi|18458 : TTTT-A-TTTC-TAATTAC-AATT------AATCAT-TAAGTGA--A-------GAACAAAAATTAAGACTGT--C-GA-AATG-CA--GGTAAAA--GG-AAGGAGAGAC-ATGCAA-AA-TC-GCAACG-TT-G-TT
gi|18459 : -TTTT-TAATTAC-AATT------AATTAT-CAAATGA--A--------AAGAAAAATTAAGACTGT--T-GG-AAAG-CA--G
gi|18460 : AAAAATTCAGACTGT--C-GA-AATG-CA--GGTAAAAA-GG-AAGGAGGGAC-ATGCAA-AA-TC-GCAACG-TT-GTTTCTCGCGCAAGTG-TTA-CGAT-TAT-TT-TTAATGTGAA-ATT-CTCACAAAA-TATGCTA-----------A--GTACA--T--GAATG-CATTAATGCTAA---AGTAATTCATAAAT-GTTT
gi|18461 : CGCAAGTG-TTA-CGAT-TAT--TATTAATGTGAC-ATT-CTCACAAAT-TATCCTATCAATATATACA---CACA--T--GTATT-TAGCAATGCTAC---AATAATTCATAAAT-GTTT
gi|18462 : G-TTA-CGAT-TAT--TATCAATGTGAA-ATT-CTCGCAAAA-TATTCTATTTATA-----A--GTACA--T--GTATG-CAGCAACGCTAC---AATAATCCATAAAT-GTTT
Alignments
lowQualScore : 1 22222222 1 111 111 111
lowQualScore : 8 4 33 8 55 8 44 0 4 4 5 666 3 77777777 3 3 55 666 3 3 3 3 888888 3 0 5555555 3 8 4 5555 3 3 44 0 3 3 2 444 7 3 3 3 3 2 3 3 3 9 3 3 3 1 3 3 2 88 2 999 1 44 44 3 0 111 3
lowQualScore : . . .. . .. . .. . . . . ... . ........ . . .. ... . . . . ...... . . ....... . . . .... . . .. . . . . ... . . . . . . . . . . . . . . . . . .. . ... . .. .. . . ... .
lowQualScore : 0 0 77 0 55 0 88 9 0 0 0 444 6 44444444 6 6 00 444 3 1 1 1 888888 3 5 5555555 6 2 8 5555 3 3 66 5 6 6 3 000 3 6 6 6 6 1 3 3 3 3 3 3 3 8 3 8 2 88 5 222 2 66 66 3 5 444 6
consensus : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
Reference ( family-860 ) : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
gi|18447 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATCCCA-AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-C-TCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18448 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGGAAAGGAGATAC-ATCCC--AA-TCAACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTTCA-AAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18449 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTTGGGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAG-AAAATTAAGATTGT--T-GGAAAAG-CA--GGTAAAAACGG-AAGGAGATAC-ATCCC--AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-C-TCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CCGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18450 : ATGCAGGTAACTAAAACACATCAG-ACAAAG-AAATCGGTAA-TG-GCTGACGA-TTAAA-CTGA-CCT--TCATCTCGCTCCACTT-GGT--AC----GTTTGGA-TTTC-TA--TACGAATT---------TATCTAAATGATAAGAAAACTGAAGAAAAATTAAGA-TGT--T-TG-GAAA-CA--GGAAAAAACGG-AAGGAGA-AC-A--CCA-AATTC-ACAATG-TT-G-TTCTCACGCAAAGGTTTACCGATCTATATTA-TAATG-GGA-ATT-C-TCAAAAAATTAAGC-ATCAATA-AGACATTGTACA--TTGATATGCCAGCAAC-CAAC---AATAATTTATAAATCGTTT
gi|18451 : TAAA-AACAAA-ATCGGGA--AAG-AAAT-AGTAA-TG-GTCTATTT-TCAAA-ATGA-A-T--ACATCT-GCTCCACTT-GGT--AT---TGCTTT-A-ATTA-TAACTAC-AATT------A
gi|18452 : AAAAA-AT-------GAG-AAAT-G--AA-TG-CCT-ACA---TAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-AATTTC-TAATTAC-AATT------AATTAT-TAATTGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTC-A-AA-TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTGAA-ATT-C-TCACAAAA-TA-GTTATTCAT-TATA-A--GT-CA--T--GTATG-CAGCAATGCTACAA-AATTATTC-TAAAT-GTTT
gi|18453 : AAAAA-ATTTG-A----G-AAA---G-AA-TG-CCT-AC-A-TAAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAA-TGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTCCA-A--TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTG-A-ATT-C-TCACAAAA-T-TGTTATTCAT-TATA-A--GT--A--T--GTATG-CAGCAATGCTACAAAAATTATTCATAAAT-GTTT
gi|18454 : AAAAC-ATGGG-A--AAGGAAAT-AGTAAATG-GTCTACAAGTTAAA-ATGA-A-TAAT-ATCT-GTTCCACTT-G-C--AT---TATTT--A-TTTCCTAAT-AC-ATCT------AATCAT-TCAA----------AATGAA-AAAAATCAAGACTGT--TTGG-AAAG-CA--G-TAAATA-GG-AAGGCAGGGC-ATGCAT-AA-TC-GCGACG-TT-G-TTC----GCAAGTG-TTA-CGAT-TAT--CATTAATGCGAA-ATTTC-TCACAAA--TATGCTATTAATATATACA---CACA--T--GTATG-CAGCAATG-TAC---AATAATTCATAAA--GTTT
gi|18455 : AAAA-ATTGG-A--AAGCAAAT-ATAAA-TGCGCT-ACAA-TTAAATATGATA-T----ATCT-GTTCCACTT-GGCCCACATATATTTT-A-TTTC-CAAT-AC-AATT------AATTAT-CAAATGA--AGAA--------AAAAATAAAGACTGTTCT-GG-AAAGCCACCAGTTAAAACGG-AAGGAGAGGTAATGGCATAATTC-GCGACGTTT-G-T----GCGCATGTG-TTA-CGAT-TA---TATTAATGCGAACATT-C-TCAC-AAA-TATGCTATTAATATATACA---CACGATT--GTATG-
gi|18456 : AAA-ATTGGGA--AAG-AAA---ATAA-TG-GTT--CAA-TTAAA-ATGA-A-TAAT-ACTT-GTTCCAAAT-TGC--AT---TGTTTT-A-TTC---AATTA--AATT------AATTAT--------------AAATGAA-AAAAATAAAGATTGT----GG-AAAG-CA--GGT-AAAACGG-AAGGA-AGGC-AGAT---AA-TC-GCGACG-TTAG-T--TCGC-----TG-TTA-CGAT---TATTATTAAT-CGAA-ATT---TC-TAAAA--ATGCTATTAATATATAC------CA--T--GT-TG-CAGCAATGCTAC---AAATATTC-TAAAT-GTTT
gi|18457 : AAA-ATGA-C-T--ATACCT-GCTTCACTT-GGT--AC---TGTTTT-A-ATGA-TAATTAC-AATTATGAACAATTAT-GAAAT
gi|18458 : TTTT-A-TTTC-TAATTAC-AATT------AATCAT-TAAGTGA--A-------GAACAAAAATTAAGACTGT--C-GA-AATG-CA--GGTAAAA--GG-AAGGAGAGAC-ATGCAA-AA-TC-GCAACG-TT-G-TT
gi|18459 : -TTTT-TAATTAC-AATT------AATTAT-CAAATGA--A--------AAGAAAAATTAAGACTGT--T-GG-AAAG-CA--G
gi|18460 : AAAAATTCAGACTGT--C-GA-AATG-CA--GGTAAAAA-GG-AAGGAGGGAC-ATGCAA-AA-TC-GCAACG-TT-GTTTCTCGCGCAAGTG-TTA-CGAT-TAT-TT-TTAATGTGAA-ATT-C-TCACAAAA-TATGCTA-----------A--GTACA--T--GAATG-CATTAATGCTAA---AGTAATTCATAAAT-GTTT
gi|18461 : CGCAAGTG-TTA-CGAT-TAT--TATTAATGTGAC-ATT-C-TCACAAAT-TATCCTATCAATATATACA---CACA--T--GTATT-TAGCAATGCTAC---AATAATTCATAAAT-GTTT
gi|18462 : G-TTA-CGAT-TAT--TATCAATGTGAA-ATT-C-TCGCAAAA-TATTCTATTTATA-----A--GTACA--T--GTATG-CAGCAACGCTAC---AATAATCCATAAAT-GTTT
Alignments
lowQualScore : 1 22222222 1 111 111 111
lowQualScore : 8 4 33 8 55 8 44 0 4 4 5 666 3 77777777 3 3 55 666 3 3 3 3 888888 3 0 5555555 3 8 4 5555 3 3 44 0 3 3 2 444 7 3 3 3 3 2 3 3 3 9 3 3 3 1 3 3 2 88 2 999 1 44 44 3 0 111 3
lowQualScore : . . .. . .. . .. . . . . ... . ........ . . .. ... . . . . ...... . . ....... . . . .... . . .. . . . . ... . . . . . . . . . . . . . . . . . .. . ... . .. .. . . ... .
lowQualScore : 0 0 77 0 55 0 88 9 0 0 0 444 6 44444444 6 6 00 444 3 1 1 1 888888 3 5 5555555 6 2 8 5555 3 3 66 5 6 6 3 000 3 6 6 6 6 1 3 3 3 3 3 3 3 8 3 8 2 88 5 222 2 66 66 3 5 444 6
consensus : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
Reference ( family-860 ) : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
gi|18447 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATCCCA-AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-C-TCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18448 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGGAAAGGAGATAC-ATCCC--AA-TCAACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTTCA-AAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18449 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTTGGGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAG-AAAATTAAGATTGT--T-GGAAAAG-CA--GGTAAAAACGG-AAGGAGATAC-ATCCC--AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-C-TCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CCGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18450 : ATGCAGGTAACTAAAACACATCAG-ACAAAG-AAATCGGTAA-TG-GCTGACGA-TTAAA-CTGA-CCT--TCATCTCGCTCCACTT-GGT--AC----GTTTGGA-TTTC-TA--TACGAATT---------TATCTAAATGATAAGAAAACTGAAGAAAAATTAAGA-TGT--T-TG-GAAA-CA--GGAAAAAACGG-AAGGAGA-AC-A--CCA-AATTC-ACAATG-TT-G-TTCTCACGCAAAGGTTTACCGATCTATATTA-TAATG-GGA-ATT-C-TCAAAAAATTAAGC-ATCAATA-AGACATTGTACA--TTGATATGCCAGCAAC-CAAC---AATAATTTATAAATCGTTT
gi|18451 : TAAA-AACAAA-ATCGGGA--AAG-AAAT-AGTAA-TG-GTCTATTT-TCAAA-ATGA-A-T--ACATCT-GCTCCACTT-GGT--AT---TGCTTT-A-ATTA-TAACTAC-AATT------A
gi|18452 : AAAAA-AT-------GAG-AAAT-G--AA-TG-CCT-ACA---TAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-AATTTC-TAATTAC-AATT------AATTAT-TAATTGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTC-A-AA-TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTGAA-ATT-C-TCACAAAA-TA-GTTATTCAT-TATA-A--GT-CA--T--GTATG-CAGCAATGCTACAA-AATTATTC-TAAAT-GTTT
gi|18453 : AAAAA-ATTTG-A----G-AAA---G-AA-TG-CCT-AC-A-TAAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAA-TGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTCCA-A--TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTG-A-ATT-C-TCACAAAA-T-TGTTATTCAT-TATA-A--GT--A--T--GTATG-CAGCAATGCTACAAAAATTATTCATAAAT-GTTT
gi|18454 : AAAAC-ATGGG-A--AAGGAAAT-AGTAAATG-GTCTACAAGTTAAA-ATGA-A-TAAT-ATCT-GTTCCACTT-G-C--AT---TATTT--A-TTTCCTAAT-AC-ATCT------AATCAT-TCAA----------AATGAA-AAAAATCAAGACTGT--TTGG-AAAG-CA--G-TAAATA-GG-AAGGCAGGGC-ATGCAT-AA-TC-GCGACG-TT-G-TTC----GCAAGTG-TTA-CGAT-TAT--CATTAATGCGAA-ATTTC-TCACAAA--TATGCTATTAATATATACA---CACA--T--GTATG-CAGCAATG-TAC---AATAATTCATAAA--GTTT
gi|18455 : AAAA-ATTGG-A--AAGCAAAT-ATAAA-TGCGCT-ACAA-TTAAATATGATA-T----ATCT-GTTCCACTT-GGCCCACATATATTTT-A-TTTC-CAAT-AC-AATT------AATTAT-CAAATGA--AGAA--------AAAAATAAAGACTGTTCT-GG-AAAGCCACCAGTTAAAACGG-AAGGAGAGGTAATGGCATAATTC-GCGACGTTT-G-T----GCGCATGTG-TTA-CGAT-TA---TATTAATGCGAACATT-C-TCAC-AAA-TATGCTATTAATATATACA---CACGATT--GTATG-
gi|18456 : AAA-ATTGGGA--AAG-AAA---ATAA-TG-GTT--CAA-TTAAA-ATGA-A-TAAT-ACTT-GTTCCAAAT-TGC--AT---TGTTTT-A-TTC---AATTA--AATT------AATTAT--------------AAATGAA-AAAAATAAAGATTGT----GG-AAAG-CA--GGT-AAAACGG-AAGGA-AGGC-AGAT---AA-TC-GCGACG-TTAG-T--TCGC-----TG-TTA-CGAT---TATTATTAAT-CGAA-ATT---TC-TAAAA--ATGCTATTAATATATAC------CA--T--GT-TG-CAGCAATGCTAC---AAATATTC-TAAAT-GTTT
gi|18457 : AAA-ATGA-C-T--ATACCT-GCTTCACTT-GGT--AC---TGTTTT-A-ATGA-TAATTAC-AATTATGAACAATTAT-GAAAT
gi|18458 : TTTT-A-TTTC-TAATTAC-AATT------AATCAT-TAAGTGA--A-------GAACAAAAATTAAGACTGT--C-GA-AATG-CA--GGTAAAA--GG-AAGGAGAGAC-ATGCAA-AA-TC-GCAACG-TT-G-TT
gi|18459 : -TTTT-TAATTAC-AATT------AATTAT-CAAATGA--A--------AAGAAAAATTAAGACTGT--T-GG-AAAG-CA--G
gi|18460 : AAAAATTCAGACTGT--C-GA-AATG-CA--GGTAAAAA-GG-AAGGAGGGAC-ATGCAA-AA-TC-GCAACG-TT-GTTTCTCGCGCAAGTG-TTA-CGAT-TAT-TT-TTAATGTGAA-ATT-C-TCACAAAA-TATGCTA-----------A--GTACA--T--GAATG-CATTAATGCTAA---AGTAATTCATAAAT-GTTT
gi|18461 : CGCAAGTG-TTA-CGAT-TAT--TATTAATGTGAC-ATT-C-TCACAAAT-TATCCTATCAATATATACA---CACA--T--GTATT-TAGCAATGCTAC---AATAATTCATAAAT-GTTT
gi|18462 : G-TTA-CGAT-TAT--TATCAATGTGAA-ATT-C-TCGCAAAA-TATTCTATTTATA-----A--GTACA--T--GTATG-CAGCAACGCTAC---AATAATCCATAAAT-GTTT
blockSeqs : T C CA G CA G TC A C G AAG T CCTTC C G CC ATA G A C G ATGAAC C TAAGAAA G G T TCT A C CC C A A C CAT T A T A T A T C C A C T T A T A C AA C TTG A AT TG C AAA C
blockSeqs : . . CA G . C T . . G GA . ATAAT . . . . . . . . . . AGAAA G G T TT . . . C . . C CA T . . . . A . . . A . . . A . A C AA C TG A . . . AA .
blockSeqs : . . CA . . . T . . G GA . ATAAT . . . . . . . . . . AGAAA G G T T . . . C . . T CA . . . . . A . . . A . . . C . A A AT C TG A . . . . .
blockSeqs : . . CG . . . T . . T GA . ATTC . . . . . . . . . . AGAAA G C C T . . . C . . T AT . . . . . A . . . A . . . C . T C AT C G A . . . . .
blockSeqs : . TT . . . T . . T TT . ATTC . . . . . . . . . . AGAAA G G A T . . . C . . G AA . . . . . A . . . A . . . C . T C AT C G A . . . . .
blockSeqs : . GG . . . T . . . AA . ATAC . . . . . . . . . . AGAA G . A T . . . . . . G AA . . . . . G . . . A . . . C . T A AT C G A . . . . .
blockSeqs : . TG . . . T . . . AA . CTAT . . . . . . . . . . A . . T T . . . . . . A C . . . . . G . . . . . . . T . T A A C G A . . . . .
blockSeqs : . TG . . . . . . . A . TAT . . . . . . . . . . A . . T C . . . . . . G C . . . . . G . . . . . . . C . T A T . . A . . . . .
blockSeqs : . . . . . . . . . A . TAT . . . . . . . . . . A . . T T . . . . . . G A . . . . . . . . . . . . . C . T A T . . . . . . . .
blockSeqs : . TAT . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . C . T T A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : G**
originalCons : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
finalCons : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACAG--TACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
Alignments
lowQualScore : 1 22222222 1 111 111 111
lowQualScore : 8 4 33 8 55 8 44 0 4 4 5 666 3 77777777 3 3 55 666 3 3 3 3 888888 3 0 5555555 3 8 4 5555 3 3 44 0 3 3 2 444 7 3 3 3 3 2 3 3 3 9 3 3 3 1 3 3 2 88 2 999 1 44 44 3 0 111 3
lowQualScore : . . .. . .. . .. . . . . ... . ........ . . .. ... . . . . ...... . . ....... . . . .... . . .. . . . . ... . . . . . . . . . . . . . . . . . .. . ... . .. .. . . ... .
lowQualScore : 0 0 77 0 55 0 88 9 0 0 0 444 6 44444444 6 6 00 444 3 1 1 1 888888 3 5 5555555 6 2 8 5555 3 3 66 5 6 6 3 000 3 6 6 6 6 1 3 3 3 3 3 3 3 8 3 8 2 88 5 222 2 66 66 3 5 444 6
consensus : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
Reference ( family-860 ) : ATGCAGGTAAC-AAAAAA-ATCGG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGACTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATNCCA-AA-TC-GCAACG-TT-G-TTCTCGCGCAAGTG-TTA-CGAT-TATATTATTAATGTGAA-ATT-C-TCACAAAA-TATGCTATTNATATATACA--GTACA--T--GTATG-CAGCAACGCTAC---AATAATTCATAAAT-GTTT
gi|18447 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGG-AAGGAGAGAC-ATCCCA-AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-C-TCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18448 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAGAAAAATTAAGATTGT--T-GG-AAAG-CA--GGTAAAAACGGAAAGGAGATAC-ATCCC--AA-TCAACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-CTTCA-AAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CAGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18449 : ATGCAGGTAAC-AAAAAA-ATCAG-A--AAG-AAAT-GGTAA-TG-GCTGACGA-TTAAA-ATGA-A-T--TCATCT-GCTCCACTTGGGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAAATGA--AGAAAAATGAAG-AAAATTAAGATTGT--T-GGAAAAG-CA--GGTAAAAACGG-AAGGAGATAC-ATCCC--AA-TC-ACAATG-TT-G-TTCTCACGCAAGGG-TTA-CGAT-TATATTATTAATGTGAA-TTT-C-TCAAAAAA-TAAGCTATTCATAAGTACAT-GTACA--T--GTATG-CCGCAACGTAAC---AATAATTTATAAAT-GTTT
gi|18450 : ATGCAGGTAACTAAAACACATCAG-ACAAAG-AAATCGGTAA-TG-GCTGACGA-TTAAA-CTGA-CCT--TCATCTCGCTCCACTT-GGT--AC----GTTTGGA-TTTC-TA--TACGAATT---------TATCTAAATGATAAGAAAACTGAAGAAAAATTAAGA-TGT--T-TG-GAAA-CA--GGAAAAAACGG-AAGGAGA-AC-A--CCA-AATTC-ACAATG-TT-G-TTCTCACGCAAAGGTTTACCGATCTATATTA-TAATG-GGA-ATT-C-TCAAAAAATTAAGC-ATCAATA-AGACATTGTACA--TTGATATGCCAGCAAC-CAAC---AATAATTTATAAATCGTTT
gi|18451 : TAAA-AACAAA-ATCGGGA--AAG-AAAT-AGTAA-TG-GTCTATTT-TCAAA-ATGA-A-T--ACATCT-GCTCCACTT-GGT--AT---TGCTTT-A-ATTA-TAACTAC-AATT------A
gi|18452 : AAAAA-AT-------GAG-AAAT-G--AA-TG-CCT-ACA---TAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-AATTTC-TAATTAC-AATT------AATTAT-TAATTGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTC-A-AA-TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTGAA-ATT-C-TCACAAAA-TA-GTTATTCAT-TATA-A--GT-CA--T--GTATG-CAGCAATGCTACAA-AATTATTC-TAAAT-GTTT
gi|18453 : AAAAA-ATTTG-A----G-AAA---G-AA-TG-CCT-AC-A-TAAAA-ATGATA-T----ATCT-GCTC-ACTT-GGT--AC---TGTTTT-A-TTTC-TAATTAC-AATT------AATTAT-TAA-TGA--AGAAAAAT-------AAT----ACTGT--T-GG-AAAG-CA--GGTAAGAA-GG-AAA-AGAGAT-ATTCCA-A--TC-GCAACG-TT-G-TTCTCACGCAAGTG-TTA-CGAT-TATATTAATAATGTG-A-ATT-C-TCACAAAA-T-TGTTATTCAT-TATA-A--GT--A--T--GTATG-CAGCAATGCTACAAAAATTATTCATAAAT-GTTT
gi|18454 : AAAAC-ATGGG-A--AAGGAAAT-AGTAAATG-GTCTACAAGTTAAA-ATGA-A-TAAT-ATCT-GTTCCACTT-G-C--AT---TATTT--A-TTTCCTAAT-AC-ATCT------AATCAT-TCAA----------AATGAA-AAAAATCAAGACTGT--TTGG-AAAG-CA--G-TAAATA-GG-AAGGCAGGGC-ATGCAT-AA-TC-GCGACG-TT-G-TTC----GCAAGTG-TTA-CGAT-TAT--CATTAATGCGAA-ATTTC-TCACAAA--TATGCTATTAATATATACA---CACA--T--GTATG-CAGCAATG-TAC---AATAATTCATAAA--GTTT
gi|18455 : AAAA-ATTGG-A--AAGCAAAT-ATAAA-TGCGCT-ACAA-TTAAATATGATA-T----ATCT-GTTCCACTT-GGCCCACATATATTTT-A-TTTC-CAAT-AC-AATT------AATTAT-CAAATGA--AGAA--------AAAAATAAAGACTGTTCT-GG-AAAGCCACCAGTTAAAACGG-AAGGAGAGGTAATGGCATAATTC-GCGACGTTT-G-T----GCGCATGTG-TTA-CGAT-TA---TATTAATGCGAACATT-C-TCAC-AAA-TATGCTATTAATATATACA---CACGATT--GTATG-
gi|18456 : AAA-ATTGGGA--AAG-AAA---ATAA-TG-GTT--CAA-TTAAA-ATGA-A-TAAT-ACTT-GTTCCAAAT-TGC--AT---TGTTTT-A-TTC---AATTA--AATT------AATTAT--------------AAATGAA-AAAAATAAAGATTGT----GG-AAAG-CA--GGT-AAAACGG-AAGGA-AGGC-AGAT---AA-TC-GCGACG-TTAG-T--TCGC-----TG-TTA-CGAT---TATTATTAAT-CGAA-ATT---TC-TAAAA--ATGCTATTAATATATAC------CA--T--GT-TG-CAGCAATGCTAC---AAATATTC-TAAAT-GTTT
gi|18457 : AAA-ATGA-C-T--ATACCT-GCTTCACTT-GGT--AC---TGTTTT-A-ATGA-TAATTAC-AATTATGAACAATTAT-GAAAT
gi|18458 : TTTT-A-TTTC-TAATTAC-AATT------AATCAT-TAAGTGA--A-------GAACAAAAATTAAGACTGT--C-GA-AATG-CA--GGTAAAA--GG-AAGGAGAGAC-ATGCAA-AA-TC-GCAACG-TT-G-TT
gi|18459 : -TTTT-TAATTAC-AATT------AATTAT-CAAATGA--A--------AAGAAAAATTAAGACTGT--T-GG-AAAG-CA--G
gi|18460 : AAAAATTCAGACTGT--C-GA-AATG-CA--GGTAAAAA-GG-AAGGAGGGAC-ATGCAA-AA-TC-GCAACG-TT-GTTTCTCGCGCAAGTG-TTA-CGAT-TAT-TT-TTAATGTGAA-ATT-C-TCACAAAA-TATGCTA-----------A--GTACA--T--GAATG-CATTAATGCTAA---AGTAATTCATAAAT-GTTT
gi|18461 : CGCAAGTG-TTA-CGAT-TAT--TATTAATGTGAC-ATT-C-TCACAAAT-TATCCTATCAATATATACA---CACA--T--GTATT-TAGCAATGCTAC---AATAATTCATAAAT-GTTT
gi|18462 : G-TTA-CGAT-TAT--TATCAATGTGAA-ATT-C-TCGCAAAA-TATTCTATTTATA-----A--GTACA--T--GTATG-CAGCAACGCTAC---AATAATCCATAAAT-GTTT