lowQualScore : 3 111111 111111
lowQualScore : 2 2 2 4 66 000000 2 2 2 0 000000 33 88 33 33 6 6
lowQualScore : . . . . .. ...... . . . . ...... .. .. .. .. . .
lowQualScore : 9 7 7 5 33 333333 9 9 9 5 888888 99 99 99 99 2 2
consensus : GGTCCGCCA-TTTGG-A-TCAAT-TTACA--CAT------ACA-GGT-ATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
Reference ( gi|99629 ) : GGTCCGCCA-TTTGG-A-TCAATATTACA--CAT------ACA-GGT-ATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99630 : GGTTCGCCA-TTTGG-A-TCAAT-TTACA--CAT------ATA-GGT-ATCC-GATGGAGAAA----G-AGGGAAACCGAGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99631 : GGTCCGCCA-CTTGG-A-TCAAT-TTACA--CAT------ACA-GGT-ATCC-GAAAGAG-AA----G-GGGGAAACC-GGC--TCA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99635 : GGTCCACGT-TTTGG-A-TCAAT--TACA--CAT------ACA-GGT-ATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TA---G-TACAAA
gi|99628 : GGTCCGCCA-TTTGG-A-ACAAT-TTACA--CAT------ACA-GGT-ATCC-GAAGGAGAAA----A-GGG-AAACCGAGC--TAA-TTTTG--ATGAT--TAA-TG-TACAAA
gi|99632 : GGTCCGCCA-TTTGG-A-TCAAT-TTACAGTCAT------ACA-AGT-ATCC-GAAAGAGAAA------GGGGAAACCGAGC--AAA-TTTTA--TTGAT--TAA-TG-TACAAA
gi|99633 : GGTCCGCCA-TTTGG-A-TCAAT-TTACA--CAT------ACA-GGT-ATCC-GAAAGAGAAA------GGGGAAACCGGGC--TAA---TTG---TGAT--TAACTG-TACAAA
gi|99634 : GGTCCGCCATTTTGG-A-TCAAT-TTACA--CAC------ACA-GGT-ATCC-GAAGGAG-AA----G-AGGGAAACCTAGC--TAA-GTTTG--TTGAT--TA
gi|99636 : GGTCCGCCA-TT--G-A-TCAA-GTTACAA-CATT-----ACA---T-ATCC-GAAAGAAAAG----G-GGACAAACCGGCT--TAA-TTTTG---TGAT--TAA-TG-TACAAA
gi|99637 : GGTCCGCCA-TTTGG-A-TCAAT-TTACA--CAT------A------------GAAA------------GGGGAAATC-GAC--AAA---TTA--TTGAT--TAA-TG-AACAAA
gi|99638 : GGTCCGCCA-TTTGG-A-TCAAT-TTACA--CAT------A
gi|99639 : TCCGCCA-TTTGA-AATCAATTTAACA--CATCCATGTACAAGGT-ATCCAGAAAGAGAAA----G-GGGAAGA-CGGGCCATAATTTTTG--TTGAT--TAAGTGTTACAGA
gi|99640 : TCCGCCA-TTTGGCA-TTAA----------AT------AC---GT--TCC-GAAGGAGAA--------GGGAAAC-GAGC--TAA-TTTTG--TTGAC----A-TG-TACAAA
gi|99641 : CCGCCA-TTTGG---TCAAT-TTACA--CAT------ACA-GGTTATCC-GAA-GAGAAATAGCG-GGGAAAACCGGGC--TAA--TTTG--TTGAT--TAA-TGATACAAA
gi|99642 : GCCA-TTTGG-A-TCAAT-TTACA--CAT------ACA-GGT-ATC--GAAAGA-AAA----G-GGGGAAACCGGGG--TAACTTTTGGTTTGAT--TAA-TG-TACAAA
gi|99643 : TGT-A-TCGAT-TTACA--CAT------ACG-GGT-ATCA-GA---AGAAA----GTGAGG-----GAGC--TAG-TTTTA--TTGATAGCAA-TG-TACGAA
Alignments
lowQualScore : 2 2 2 2 2 55 999999 2 2 2 888888 33 77 33 33 5 5
lowQualScore : . . . . . .. ...... . . . ...... .. .. .. .. . .
lowQualScore : 5 5 5 5 5 99 777777 7 7 7 333333 77 77 77 77 7 7
consensus : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
Reference ( family-854 ) : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99628 : GGTCCGCCATTT-GG-A-ACAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAGGAGAAA------AGGGAAACCGAGC--TAA-TTTTG--ATGAT--TAA-TG-TACAAA
gi|99629 : GGTCCGCCATTT-GG-A-TCAATATTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99630 : GGTTCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ATA-GG-TATCC-GATGGAGAAA----G-AGGGAAACCGAGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99631 : GGTCCGCCACTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAG-AA----G-GGGGAAACC-GGC--TCA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99632 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CAGTCAT------ACA-AG-TATCC-GAAAGAGAAA----G-GGG-AAACCGAGC--AAA-TTTTA--TTGAT--TAA-TG-TACAAA
gi|99633 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA------GGGGAAACCGGGC--TAA---TTG---TGAT--TAACTG-TACAAA
gi|99634 : GGTCCGCCATTTTGG-A-TCAAT-TTA-CA--CAC------ACA-GG-TATCC-GAAGGAG-AA----G-AGGGAAACCTAGC--TAA-GTTTG--TTGAT--TA
gi|99635 : GGTCCACGTTTT-GG-A-TCAAT-T-A-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TA---G-TACAAA
gi|99636 : GGTCCGCCATT---G-A-TCAAG-TTA-CAA-CATT-----ACA----TATCC-GAAAGAAAAG----G-GGACAAACCGGCT--TAA-TTTTG---TGAT--TAA-TG-TACAAA
gi|99637 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------A------------GAAA------------GGGGAAATC-GAC--AAA---TTA--TTGAT--TAA-TG-AACAAA
gi|99638 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------A
gi|99639 : TCCGCCATTT-GA-AATCAAT-TTAACA--CATCCATGTACAAGG-TATCCAGAAAGAGAAA----G-GGGAAGA-CGGGCCATAATTTTTG--TTGAT--TAAGTGTTACAGA
gi|99640 : TCCGCCATTT-GGCA-TTAA-----------AT------AC---G-T-TCC-GAAGGAGAA--------GGGAAAC-GAGC--TAA-TTTTG--TTGAC----A-TG-TACAAA
gi|99641 : CCGCCATTT-GG---TCAAT-TTA-CA--CAT------ACA-GGTTATCC-G-AAGAGAAATAGCG-GGGAAAACCGGGC--TAA--TTTG--TTGAT--TAA-TGATACAAA
gi|99642 : GCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TAT-C-GAAAGA-AAA----G-GGGGAAACCGGGG--TAACTTTTGGTTTGAT--TAA-TG-TACAAA
gi|99643 : T-GT-A-TCGAT-TTA-CA--CAT------ACG-GG-TATCA-GA---AGAAA----GTGAGG-----GAGC--TAG-TTTTA--TTGATAGCAA-TG-TACGAA
Alignments
lowQualScore : 2 2 2 2 2 55 999999 2 2 2 888888 33 77 33 33 5 5
lowQualScore : . . . . . .. ...... . . . ...... .. .. .. .. . .
lowQualScore : 5 5 5 5 5 99 777777 7 7 7 333333 77 77 77 77 7 7
consensus : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
Reference ( family-854 ) : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99628 : GGTCCGCCATTT-GG-A-ACAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAGGAGAAA------AGGGAAACCGAGC--TAA-TTTTG--ATGAT--TAA-TG-TACAAA
gi|99629 : GGTCCGCCATTT-GG-A-TCAATATTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99630 : GGTTCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ATA-GG-TATCC-GATGGAGAAA----G-AGGGAAACCGAGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99631 : GGTCCGCCACTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAG-AA----G-GGGGAAACC-GGC--TCA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99632 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CAGTCAT------ACA-AG-TATCC-GAAAGAGAAA----G-GGG-AAACCGAGC--AAA-TTTTA--TTGAT--TAA-TG-TACAAA
gi|99633 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA------GGGGAAACCGGGC--TAA---TTG---TGAT--TAACTG-TACAAA
gi|99634 : GGTCCGCCATTTTGG-A-TCAAT-TTA-CA--CAC------ACA-GG-TATCC-GAAGGAG-AA----G-AGGGAAACCTAGC--TAA-GTTTG--TTGAT--TA
gi|99635 : GGTCCACGTTTT-GG-A-TCAAT-T-A-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TA---G-TACAAA
gi|99636 : GGTCCGCCATT---G-A-TCAAG-TTA-CAA-CATT-----ACA----TATCC-GAAAGAAAAG----G-GGACAAACCGGCT--TAA-TTTTG---TGAT--TAA-TG-TACAAA
gi|99637 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------A------------GAAA------------GGGGAAATC-GAC--AAA---TTA--TTGAT--TAA-TG-AACAAA
gi|99638 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------A
gi|99639 : TCCGCCATTT-GA-AATCAAT-TTAACA--CATCCATGTACAAGG-TATCCAGAAAGAGAAA----G-GGGAAGA-CGGGCCATAATTTTTG--TTGAT--TAAGTGTTACAGA
gi|99640 : TCCGCCATTT-GGCA-TTAA-----------AT------AC---G-T-TCC-GAAGGAGAA--------GGGAAAC-GAGC--TAA-TTTTG--TTGAC----A-TG-TACAAA
gi|99641 : CCGCCATTT-GG---TCAAT-TTA-CA--CAT------ACA-GGTTATCC-G-AAGAGAAATAGCG-GGGAAAACCGGGC--TAA--TTTG--TTGAT--TAA-TGATACAAA
gi|99642 : GCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TAT-C-GAAAGA-AAA----G-GGGGAAACCGGGG--TAACTTTTGGTTTGAT--TAA-TG-TACAAA
gi|99643 : T-GT-A-TCGAT-TTA-CA--CAT------ACG-GG-TATCA-GA---AGAAA----GTGAGG-----GAGC--TAG-TTTTA--TTGATAGCAA-TG-TACGAA
blockSeqs : T C A A A GT CCATGT A T A TAGCG CA TT GT AG C T
blockSeqs : . . . . . A T . . . GT . CT . . G A
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . G . G . . . .
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . G . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : G*****
originalCons : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
finalCons : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAAG-----GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
Alignments
lowQualScore : 2 2 2 2 2 55 999999 2 2 2 888888 33 77 33 33 5 5
lowQualScore : . . . . . .. ...... . . . ...... .. .. .. .. . .
lowQualScore : 5 5 5 5 5 99 777777 7 7 7 333333 77 77 77 77 7 7
consensus : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
Reference ( family-854 ) : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99628 : GGTCCGCCATTT-GG-A-ACAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAGGAGAAA------AGGGAAACCGAGC--TAA-TTTTG--ATGAT--TAA-TG-TACAAA
gi|99629 : GGTCCGCCATTT-GG-A-TCAATATTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99630 : GGTTCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ATA-GG-TATCC-GATGGAGAAA----G-AGGGAAACCGAGC--TAA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99631 : GGTCCGCCACTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAG-AA----G-GGGGAAACC-GGC--TCA-TTTTG--TTGAT--TAA-TG-TACAAA
gi|99632 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CAGTCAT------ACA-AG-TATCC-GAAAGAGAAA----G-GGG-AAACCGAGC--AAA-TTTTA--TTGAT--TAA-TG-TACAAA
gi|99633 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA------GGGGAAACCGGGC--TAA---TTG---TGAT--TAACTG-TACAAA
gi|99634 : GGTCCGCCATTTTGG-A-TCAAT-TTA-CA--CAC------ACA-GG-TATCC-GAAGGAG-AA----G-AGGGAAACCTAGC--TAA-GTTTG--TTGAT--TA
gi|99635 : GGTCCACGTTTT-GG-A-TCAAT-T-A-CA--CAT------ACA-GG-TATCC-GAAAGAGAAA----G-GGGGAAACCGGGC--TAA-TTTTG--TTGAT--TA---G-TACAAA
gi|99636 : GGTCCGCCATT---G-A-TCAAG-TTA-CAA-CATT-----ACA----TATCC-GAAAGAAAAG----G-GGACAAACCGGCT--TAA-TTTTG---TGAT--TAA-TG-TACAAA
gi|99637 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------A------------GAAA------------GGGGAAATC-GAC--AAA---TTA--TTGAT--TAA-TG-AACAAA
gi|99638 : GGTCCGCCATTT-GG-A-TCAAT-TTA-CA--CAT------A
gi|99639 : TCCGCCATTT-GA-AATCAAT-TTAACA--CATCCATGTACAAGG-TATCCAGAAAGAGAAA----G-GGGAAGA-CGGGCCATAATTTTTG--TTGAT--TAAGTGTTACAGA
gi|99640 : TCCGCCATTT-GGCA-TTAA-----------AT------AC---G-T-TCC-GAAGGAGAA--------GGGAAAC-GAGC--TAA-TTTTG--TTGAC----A-TG-TACAAA
gi|99641 : CCGCCATTT-GG---TCAAT-TTA-CA--CAT------ACA-GGTTATCC-G-AAGAGAAATAGCG-GGGAAAACCGGGC--TAA--TTTG--TTGAT--TAA-TGATACAAA
gi|99642 : GCCATTT-GG-A-TCAAT-TTA-CA--CAT------ACA-GG-TAT-C-GAAAGA-AAA----G-GGGGAAACCGGGG--TAACTTTTGGTTTGAT--TAA-TG-TACAAA
gi|99643 : T-GT-A-TCGAT-TTA-CA--CAT------ACG-GG-TATCA-GA---AGAAA----GTGAGG-----GAGC--TAG-TTTTA--TTGATAGCAA-TG-TACGAA