lowQualScore : 111 1
lowQualScore : 2 77777 222 3 7 2 444
lowQualScore : . ..... ... . . . ...
lowQualScore : 9 11111 999 2 4 7 777
consensus : AAGTAG-GA-----TAA--CGCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
Reference ( gi|85530 ) : AAGTAG-GA-----TAC--CGCTCCTTAGACTAACTGAGGCAGC-TGATGAA---ATAGCTCTTGA
gi|85528 : AAGTAG-GA-----CAC--CGCTCCTTAGGCTAACTGAGGCAGA-TGATGAA---ATAGCTCTTGA
gi|85518 : atagAAGTAG-GA-----AAC--TGTTACTTAGACTAGCTGAGCCAGC-TGATGAA---ATAGCTCTTGA
gi|85517 : aaatagAAGTAA-AA-----TAG--CGCTACTTGGACTAGCTGAGGCAGC-TAATGAA---ATAGCTCTTG
gi|85529 : aaatagAAGTAG-GA-----TAG--CGCTACTTAGTCTAGCTGGGGCAGC-TGATGAA---ATAGCT
gi|85519 : gAAGTAG-GA-----TAA--CACTACTTAGACTAGCTAAGGCAGC-AAATGAA---ATAACTCTTGA
gi|85520 : aaatggAAGTAG-GC-----TAA--CGCTACTTAGACTAGCAGAGGCATT-TGATGAA---ATAGCTCTTGA
gi|85521 : agatacAAGTAG-GACAGTATAA--CGCTACTTAGACTAGCTAAAACAAC-TAATGAA---ATAGCTCTTGA
gi|85523 : aaatggAAGTAG-GA-----TAC---ACTATTTAGAGAAGGTGAGACAGC-TGATGAA---ATAGCTCTT
gi|85522 : aaatagAAGTAG-GA-----TAA--CGCTACTTAGACTAGGTGAGACAGC-TTATGAA---
gi|85525 : aaatagAAATAT-GA-----TAT--CGCTACTTAGACTA---------GC-TGATGAA---ATAGCTCTTG
gi|85524 : aaatagAAATAG-GA-----TAA--TGCTACTTAGACTAGCAAAGGCAGA-T-ATGAAATTATAGCTCTTG
gi|85526 : aaataAAGTAG-GA-----TAA--CG----TAAGACTAGCTGAGCCAGC-TGGT-AA---ATACCTATT
gi|85527 : agatagAAGTGGTGA-----TAATACGCTATTTAGACTAGCTGA-GCAGCGTATTGAT---ATAGCTTTTG
gi|85531 : aatgTAG-GA-----TAA--CG----TAAGACTAGCTGAGGCAGC-TGATTGA---ATACTTATTGA
gi|85532 : CTGAGGCAGC-TGATGAA---ATAGCTCTTGA
Alignments
lowQualScore : 2 66666 444 2 2 444
lowQualScore : . ..... ... . . ...
lowQualScore : 7 77777 999 7 5 444
consensus : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
Reference ( family-852 ) : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
gi|85517 : AAGTAA-AA-----TAG--C-GCTACTTGGACTAGCTGAGGCAGC-TAATGAA---ATAGCTCTTG
gi|85518 : aaatagAAGTAG-GA------AA--CTGTTACTTAGACTAGCTGAGCCAGC-TGATGAA---ATAGCTCTTGA
gi|85519 : aaatagAAGTAG-GA-----TAA--C-ACTACTTAGACTAGCTAAGGCAGC-AAATGAA---ATAACTCTTGA
gi|85520 : aaatggAAGTAG-GC-----TAA--C-GCTACTTAGACTAGCAGAGGCATT-TGATGAA---ATAGCTCTTGA
gi|85521 : agatacAAGTAG-GACAGTATAA--C-GCTACTTAGACTAGCTAAAACAAC-TAATGAA---ATAGCTCTTGA
gi|85522 : aaatggAAGTAG-GA-----TAA--C-GCTACTTAGACTAGGTGAGACAGC-TTATGAA---
gi|85523 : aaatagAAGTAG-GA-----TA---C-ACTATTTAGAGAAGGTGAGACAGC-TGATGAA---ATAGCTCTT
gi|85524 : aaatagAAATAG-GA-----TAA--T-GCTACTTAGACTAGCAAAGGCAGA-T-ATGAAATTATAGCTCTTG
gi|85525 : aaataAAATAT-GA-----TAT--C-GCTACTTAGACT---------AGC-TGATGAA---ATAGCTCTTG
gi|85526 : aaatagAAGTAG-GA-----TAA--C-G-TA---AGACTAGCTGAGCCAGC-TGGT-AA---ATACCTATT
gi|85527 : agatagAAGTGGTGA-----TAATAC-GCTATTTAGACTAGCTGA-GCAGCGTATTGAT---ATAGCTTTTG
gi|85528 : aatgAAGTAG-GA-----CAC--C-GCTCCTTAGGCTAACTGAGGCAGA-TGATGAA---ATAGCTCTTGA
gi|85529 : atagAAGTAG-GA-----TAG--C-GCTACTTAGTCTAGCTGGGGCAGC-TGATGAA---ATAGCT
gi|85530 : gAAGTAG-GA-----TAC--C-GCTCCTTAGACTAACTGAGGCAGC-TGATGAA---ATAGCTCTTGA
gi|85531 : TAG-GA-----TAA--C-G-TA---AGACTAGCTGAGGCAGC-TGATTGA---ATACTTATTGA
gi|85532 : CTGAGGCAGC-TGATGAA---ATAGCTCTTGA
Alignments
lowQualScore : 2 66666 444 2 2 444
lowQualScore : . ..... ... . . ...
lowQualScore : 7 77777 999 7 5 444
consensus : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
Reference ( family-852 ) : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
gi|85517 : AAGTAA-AA-----TAG--C-GCTACTTGGACTAGCTGAGGCAGC-TAATGAA---ATAGCTCTTG
gi|85518 : aaatagAAGTAG-GA------AA--CTGTTACTTAGACTAGCTGAGCCAGC-TGATGAA---ATAGCTCTTGA
gi|85519 : aaatagAAGTAG-GA-----TAA--C-ACTACTTAGACTAGCTAAGGCAGC-AAATGAA---ATAACTCTTGA
gi|85520 : aaatggAAGTAG-GC-----TAA--C-GCTACTTAGACTAGCAGAGGCATT-TGATGAA---ATAGCTCTTGA
gi|85521 : agatacAAGTAG-GACAGTATAA--C-GCTACTTAGACTAGCTAAAACAAC-TAATGAA---ATAGCTCTTGA
gi|85522 : aaatggAAGTAG-GA-----TAA--C-GCTACTTAGACTAGGTGAGACAGC-TTATGAA---
gi|85523 : aaatagAAGTAG-GA-----TA---C-ACTATTTAGAGAAGGTGAGACAGC-TGATGAA---ATAGCTCTT
gi|85524 : aaatagAAATAG-GA-----TAA--T-GCTACTTAGACTAGCAAAGGCAGA-T-ATGAAATTATAGCTCTTG
gi|85525 : aaataAAATAT-GA-----TAT--C-GCTACTTAGACT---------AGC-TGATGAA---ATAGCTCTTG
gi|85526 : aaatagAAGTAG-GA-----TAA--C-G-TA---AGACTAGCTGAGCCAGC-TGGT-AA---ATACCTATT
gi|85527 : agatagAAGTGGTGA-----TAATAC-GCTATTTAGACTAGCTGA-GCAGCGTATTGAT---ATAGCTTTTG
gi|85528 : aatgAAGTAG-GA-----CAC--C-GCTCCTTAGGCTAACTGAGGCAGA-TGATGAA---ATAGCTCTTGA
gi|85529 : atagAAGTAG-GA-----TAG--C-GCTACTTAGTCTAGCTGGGGCAGC-TGATGAA---ATAGCT
gi|85530 : gAAGTAG-GA-----TAC--C-GCTCCTTAGACTAACTGAGGCAGC-TGATGAA---ATAGCTCTTGA
gi|85531 : TAG-GA-----TAA--C-G-TA---AGACTAGCTGAGGCAGC-TGATTGA---ATACTTATTGA
gi|85532 : CTGAGGCAGC-TGATGAA---ATAGCTCTTGA
blockSeqs : T CAGTA ATA T G ATT
blockSeqs : . . A . . .
blockSeqs : . . A . . .
blockSeqs : . . A . . .
blockSeqs : . . A . . .
blockSeqs : . . A . . .
blockSeqs : . . A . . .
blockSeqs : . . T . . .
blockSeqs : . . A . . .
blockSeqs : . . C . . .
blockSeqs : . . G . . .
blockSeqs : . . C . . .
blockSeqs : . . A . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
finalCons : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
Alignments
lowQualScore : 2 66666 444 2 2 444
lowQualScore : . ..... ... . . ...
lowQualScore : 7 77777 999 7 5 444
consensus : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
Reference ( family-852 ) : AAGTAG-GA-----TAA--C-GCTACTTAGACTAGCTGAGGCAGC-TGATGAA---ATAGCTCTTGA
gi|85517 : AAGTAA-AA-----TAG--C-GCTACTTGGACTAGCTGAGGCAGC-TAATGAA---ATAGCTCTTG
gi|85518 : aaatagAAGTAG-GA------AA--CTGTTACTTAGACTAGCTGAGCCAGC-TGATGAA---ATAGCTCTTGA
gi|85519 : aaatagAAGTAG-GA-----TAA--C-ACTACTTAGACTAGCTAAGGCAGC-AAATGAA---ATAACTCTTGA
gi|85520 : aaatggAAGTAG-GC-----TAA--C-GCTACTTAGACTAGCAGAGGCATT-TGATGAA---ATAGCTCTTGA
gi|85521 : agatacAAGTAG-GACAGTATAA--C-GCTACTTAGACTAGCTAAAACAAC-TAATGAA---ATAGCTCTTGA
gi|85522 : aaatggAAGTAG-GA-----TAA--C-GCTACTTAGACTAGGTGAGACAGC-TTATGAA---
gi|85523 : aaatagAAGTAG-GA-----TA---C-ACTATTTAGAGAAGGTGAGACAGC-TGATGAA---ATAGCTCTT
gi|85524 : aaatagAAATAG-GA-----TAA--T-GCTACTTAGACTAGCAAAGGCAGA-T-ATGAAATTATAGCTCTTG
gi|85525 : aaataAAATAT-GA-----TAT--C-GCTACTTAGACT---------AGC-TGATGAA---ATAGCTCTTG
gi|85526 : aaatagAAGTAG-GA-----TAA--C-G-TA---AGACTAGCTGAGCCAGC-TGGT-AA---ATACCTATT
gi|85527 : agatagAAGTGGTGA-----TAATAC-GCTATTTAGACTAGCTGA-GCAGCGTATTGAT---ATAGCTTTTG
gi|85528 : aatgAAGTAG-GA-----CAC--C-GCTCCTTAGGCTAACTGAGGCAGA-TGATGAA---ATAGCTCTTGA
gi|85529 : atagAAGTAG-GA-----TAG--C-GCTACTTAGTCTAGCTGGGGCAGC-TGATGAA---ATAGCT
gi|85530 : gAAGTAG-GA-----TAC--C-GCTCCTTAGACTAACTGAGGCAGC-TGATGAA---ATAGCTCTTGA
gi|85531 : TAG-GA-----TAA--C-G-TA---AGACTAGCTGAGGCAGC-TGATTGA---ATACTTATTGA
gi|85532 : CTGAGGCAGC-TGATGAA---ATAGCTCTTGA