lowQualScore : 0 1111 1 0 0000 0 2
lowQualScore : . .... . . .... . .
lowQualScore : 4 3333 3 4 9999 8 0
consensus : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA-C----AAG-TTGNTGTTGCAGGGGTTTCAACA
Reference ( gi|55874 ) : TTTTGAA-TCGAGGCAGGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55932 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55931 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55930 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55927 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55925 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55924 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55921 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55920 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55919 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55918 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55917 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55916 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55915 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55913 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55912 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55911 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55910 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55909 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55908 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55907 : TTTTGAA-TCGAGGCAGACTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55905 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55881 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA-C----AAG-TTGTTGTTGCAGGGATTTCAACA
gi|55879 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA-C----AAG-TTGTTGTTGCAAGGGTTTCAACA
gi|55878 : TTTTGAA-TCGAGACAGGCTACTTA----CAAA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55875 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTACAGGGGTTTCAACA
gi|55873 : TTTTGAA-TCGAGGCAGGCTACTTA----TATA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55863 : TTTTGAA-TCGAGGCAAGCTACTTA----CATA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55897 : TTTTGAA-TCGAGGCAGGCTACTTA----GAAA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55895 : TTTTGAA-TCGAGGCAGGCTACTTA----GAAA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55901 : TTTTGAA-TCGAGGCAGGCTACTTA----CTAA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55904 : TTTTGAA-TCGGGGCAGGCTACTTA----CAAA-C----AAG-CTGTTGTTGCAGGGGTTTCAACA
gi|55860 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA-C----AAG-TTGTTGCTACAGGGGTTTCAACA
gi|55886 : TTTTAAA-TCAAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55883 : tTTTTAAA-TCGAGACAGGCTACTTA----CAAA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55862 : tTTTTGAA-TCAAGGCAGGCTACTTA----CAAA-C----AAG-TTGTTGTTGCAGGGATTTCAACA
gi|55882 : TTTTTAA-TCGAGGCAGGCTACTTA----CAGA-C----AAG-TTGTTGTTGCTGGGGTTTCAACA
gi|55943 : TTTTGAA-TCAAGGCAGGCTACTTA----CAGA-C----AAG-CTGTTGTTGCAGGGGTTTCAA
gi|55951 : TTTTGAA-TCGACGCAGGCTACTTA----CAAA-C----AAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|55950 : TCTTGAA-TCGAGGCAGGCTACTTAT---CAAA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55914 : TTTTGAA-TCGAGGCAGGCTACTCA----CAAA-C----AAG-TTGTTGCTGCAGAGGTTTCAACA
gi|55936 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGTTTTCAACA
gi|55933 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGCGTTTCAACA
gi|55900 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA-C----AAG-TTGTTGCTACATGGGTTTCAACA
gi|55890 : TTTTTAA-TCGAGGCAAGTTACTTA----CAGA-C----AAG-TTGCTGTTGCAGGGGTTTCAACA
gi|55865 : TTTTGAA-TCAAGACAGACTACTGA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55942 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA-C----AA----GTTGTTGCAGGGGTTTCAACA
gi|55941 : TTTTGAA-TCGAGGCAAGCTACTTA----CAAA-C----AAA-TTGTTGTTACAAGGGTTTCAACA
gi|55869 : TTTTTAA-TCGAGGCAGGCTACTTATGTACAAA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55853 : TTTTTAA-TCGAGGCAGGCTACTTA----CAAA-C----AAG-TTGTTGTTAAAGGGGTTTCAACA
gi|55887 : TTTTTAA-TCGAGGCAGGCTACTTA----CAAA-T----AAG-TTGTTGATGCAGGGGTTTCAACA
gi|55872 : TTTTGAA-TCGAGAAAGGCTACTTA----CAAA-C----AAG-TTGATGTTGCAGGGGTTTCAACA
gi|55952 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAG-C----AAG-TTTTTGTTGCAGGGGTTTCAGCA
gi|55891 : TTTTCAA-TCGAGGCAGGTTACTTA----CAAA-C----AAG-TTGCTGTTGCAGGGATTTCAACA
gi|55856 : TTTTTAA-TCAAGGCAGGCTACTTA----CAAA-C----AAG-TTATTGTTGCAGGAGTTTCAACA
gi|55871 : TTTTTAA-TCGAGGCAGACTACTTA----CAAA-C----AAG-TTGCTGTTGCAGTGGTTTCAACA
gi|55947 : TTTTGAA-TCTAGTCAGGCTACTTA----CAAA-T----AAG-TTGTTGTTACAGGGGTTTCAACA
gi|55902 : TTTTTAA-TCGAGGTAGGTTACTTA----CAAA-C----AAG-TTGCTGTTGCAGGAGTTTCAAC
gi|55854 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA-C----AAG-TCGATGTTGCAGGGCTTTCAACA
gi|55870 : tTTTTAAA-TCGAGGCAAGCTACTGA----CAAA-C----AAG-TTGGTATTGCAGGGATTTCAACA
gi|55953 : tTTTTGAA-TCAAGGCAGGCTACTTA----CAAA-C----AAG-GTGGTATTTCAGGGGTTTTAACA
gi|55948 : TTTTTAG-TCGAGGCAGGCTACTTT----CAAA-C----AAG-TTGGTGTTGTAGGGGTTTCAATA
gi|55852 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA-C----ACG-TTGATGTTACAGGGGTTTCACCA
gi|55939 : tTTTTTAA-TCGAAGGAGGCTATTGA----CAAA-C----AAG-TTGTTCTTGCAGGGGTTTCAACA
gi|55845 : TTTTTAA-CCAAGTCAGGCTACTGA----CAAA-C----AAG-TTGATGTTGCAGGGGTTTCAACA
gi|56134 : TTTCAAA-TCGAGGCAGGCTACTGA----CAAA-C----AGT-TTGATGTTACAGGGGTTTCAACA
gi|55846 : tTTCTAAA-TCAAGGCAGGCTACTGA----CAAA-C----AAG-TTGATGTTACATGGGTTTCAACA
gi|55844 : tTTTTTAA-TTAAGACAGGCTACTGA----CAAA-C----AAG-TTGATGTTACAGGGGTTTCAACA
gi|55876 : TTTTAAT-TCGAGGCAGGCTACTTA----CAAA-C----AAG-TTGATATTACAGGGGTGTTAACA
gi|55855 : tTTTTAAA-TCGAAGCAGGCTACTGA----CAAA-C----AAA-TTGATGTAACAGGGGTTTCAACA
gi|55892 : tTTTTAAA-TCGAGGCAGGCTACAGA----CAAA-C----AAG-TTGATGTTGCTGGGGTTTCAA
gi|55858 : tTTTTAAA-TCGAGGCAGGCTACTGA-----AAA-C----AAG-TTGATGTTACAGGGTTTTCAACA
gi|55938 : tTTTTAAA-TCGAGACAGGCTACTGA----CAAA-C----AAG-TTGATCTTGCAGGAGTTTGAACA
gi|56135 : tTTTCAAA-TCGAGACAGGCTGCTGA----CAAA-C----AAG-TTTATGTTACAGGGGTTTCAACA
gi|55888 : tTTTTAAAATCGAGACAGGTTACTGA----CAAA-C----AAG-TTGATGTTGCAAGAGTTTCAACA
gi|55868 : tTTTTAAA-TAGAAGCAGGCTATTGA----CAAA-C----AAG-TTAATGTTACAGGGGTTTCAACA
gi|55866 : TTTTAAA-TCGAAGCAGGCTTCTGA----CAAA-C----AAG-TTGATGTTACAGGGGCTTCAATA
gi|55956 : tTTTTAAA-TCGAGGAATGTTACTGA----CAAA-C----AAG-TTGATGTTGCAGGTGTTTCAACA
gi|55899 : tTTTTAAA-TCGAGACAGGCTACTGA----CAAA-A----AAG-TTGATGTTTCAAGGGTTTCAAC
gi|55957 : tTTTTAAA-TCGAGACTGGCTACTGA----CAAA-C----AAG-TTGATGTTGCAGGTGTTTTAAC
gi|55894 : TTTTAAA-TCGAGGCAGGCTGC-TG----CAAAGC----AAG-TTAATGTTACAGGGGTTTCAACA
gi|55906 : tTTTTGAA-TCGAGGCAGACTACTGA----CAAA-C----AAGTTTGATGCTACAGGAGTTTGAACA
gi|56139 : TTTTAGA-TCAAAGCAGGCCACTGC----CAAA-C----AAG-TTGATGTCGCAGGGGTTTCAACA
gi|55945 : TTTTGAA-TCGAGGCAGACTACTGA----CAAA-T----AAG-TTGATGTTACAAAGGGTTCAGCA
gi|55885 : TTTTAAA-T-GAGGCAGGCTACTGA----CAAA-C----AAG-TTGATGTTCCAGGAGTTTGAACA
gi|55850 : tTTTTTAA-TCAAGGCAGGCTACTGA----CAAA-TTCGTAAG-TTGGTGTTACAGGGGTTCCAACA
gi|55940 : TTTTAAA-TCGAGGCACTCTACTGA----CAAA-T----AAG-TTGATGTTACAGGGATTTCAATA
gi|55859 : tTTTTTAA-TCGAGGCAGGCTACTGA-----AAA-C----AAATTTGATGTTACAGGGTTTTCAACA
gi|56136 : TTTTATA-TCAAGGCAGGATACTGA----CAAA-C----AAG-TTGATGTTACAAGGATTTTAACA
gi|55955 : TTTTAAA-TTAAGGCAGACTACTGA----AAAA-C----AAG-TTTATGTTACAAGGATTTCAAC
gi|56145 : tTTTGAA-TCGAGGCAAGCTACTTA----CAGA-C----AAG-TTGTTGTTGCAGGGGTTTCAACA
gi|56143 : TTTTAA-TCAAGACAGGCTACTTA----CGAA-T----AAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|56133 : TTTTAA-TCGAGGCAGGCTACTGA----CAAA-C----AAG-TTTATGTTGCAGGGGTTTGAACA
gi|56140 : TTTAAA-TCGAGACAGGCTACTGA----CAAA-T----AGG-TTGGTGTTACAGGGATTTCAACA
gi|56161 : TTAAA-TCGAAACAGGCTACTGA----TAAA-C----AAG-TTGATGTTACAAGGGTTTCAACA
gi|56174 : AA-TCGAGGCAGGCTACTGA----CAAA-C----AAA-TTGATGTTACAGTGGTTTCAACA
gi|56172 : AA-TCGAGACAGCCAACTTA----CAAA-C----AAG-TTGATGTTACAGGGGTTTCAACA
gi|56138 : tAA-TCGAGGCAGGCTACTGA----CAAA-C----TAG-TTGATATTACAAGGGTTTCAACA
gi|56171 : ttttaaaA-TCAAAGCAGGCTACTGA----CAAA-C----AAG-TTGATATTGCAGGGGCTTCACCA
gi|55949 : tgCGAGGCAGGCTACTGA----CAAA-C----AAG-TTGATGTCACAGGGTTTTCAGC
Alignments
lowQualScore : 0 1111 1111 0 1
lowQualScore : . .... .... . .
lowQualScore : 4 3333 3333 8 1
consensus : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
Reference ( family-85 ) : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
gi|55844 : TTTTTAA-TTAAGACAGGCTACTGA----CAAA----CAAG-TTGATGTTACAGGGGTTTCAACA
gi|55845 : TTTTTAA-CCAAGTCAGGCTACTGA----CAAA----CAAG-TTGATGTTGCAGGGGTTTCAACA
gi|55846 : TTCTAAA-TCAAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTTACATGGGTTTCAACA
gi|55850 : tTTTTTAA-TCAAGGCAGGCTACTGA----CAAATTCGTAAG-TTGGTGTTACAGGGGTTCCAACA
gi|55852 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA----CACG-TTGATGTTACAGGGGTTTCACCA
gi|55853 : tTTTTTAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTAAAGGGGTTTCAACA
gi|55854 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA----CAAG-TCGATGTTGCAGGGCTTTCAACA
gi|55855 : tTTTTAAA-TCGAAGCAGGCTACTGA----CAAA----CAAA-TTGATGTAACAGGGGTTTCAACA
gi|55856 : tTTTTTAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-TTATTGTTGCAGGAGTTTCAACA
gi|55858 : TTTTAAA-TCGAGGCAGGCTACTGA-----AAA----CAAG-TTGATGTTACAGGGTTTTCAACA
gi|55859 : tTTTTTAA-TCGAGGCAGGCTACTGA-----AAA----CAAATTTGATGTTACAGGGTTTTCAACA
gi|55860 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGCTACAGGGGTTTCAACA
gi|55862 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGATTTCAACA
gi|55863 : TTTTGAA-TCGAGGCAAGCTACTTA----CATA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55865 : TTTTGAA-TCAAGACAGACTACTGA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55866 : TTTTAAA-TCGAAGCAGGCTTCTGA----CAAA----CAAG-TTGATGTTACAGGGGCTTCAATA
gi|55868 : tTTTTAAA-TAGAAGCAGGCTATTGA----CAAA----CAAG-TTAATGTTACAGGGGTTTCAACA
gi|55869 : TTTTTAA-TCGAGGCAGGCTACTTATGTACAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55870 : TTTTAAA-TCGAGGCAAGCTACTGA----CAAA----CAAG-TTGGTATTGCAGGGATTTCAACA
gi|55871 : tTTTTTAA-TCGAGGCAGACTACTTA----CAAA----CAAG-TTGCTGTTGCAGTGGTTTCAACA
gi|55872 : TTTTGAA-TCGAGAAAGGCTACTTA----CAAA----CAAG-TTGATGTTGCAGGGGTTTCAACA
gi|55873 : TTTTGAA-TCGAGGCAGGCTACTTA----TATA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55874 : TTTTGAA-TCGAGGCAGGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55875 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTACAGGGGTTTCAACA
gi|55876 : TTTTAAT-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGATATTACAGGGGTGTTAACA
gi|55878 : tTTTTGAA-TCGAGACAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55879 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAAGGGTTTCAACA
gi|55881 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGATTTCAACA
gi|55882 : TTTTTAA-TCGAGGCAGGCTACTTA----CAGA----CAAG-TTGTTGTTGCTGGGGTTTCAACA
gi|55883 : TTTTAAA-TCGAGACAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55885 : tTTTTAAA-T-GAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTTCCAGGAGTTTGAACA
gi|55886 : tTTTTAAA-TCAAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55887 : tTTTTTAA-TCGAGGCAGGCTACTTA----CAAA----TAAG-TTGTTGATGCAGGGGTTTCAACA
gi|55888 : TTTTAAAATCGAGACAGGTTACTGA----CAAA----CAAG-TTGATGTTGCAAGAGTTTCAACA
gi|55890 : tTTTTTAA-TCGAGGCAAGTTACTTA----CAGA----CAAG-TTGCTGTTGCAGGGGTTTCAACA
gi|55891 : TTTTCAA-TCGAGGCAGGTTACTTA----CAAA----CAAG-TTGCTGTTGCAGGGATTTCAACA
gi|55892 : TTTTAAA-TCGAGGCAGGCTACAGA----CAAA----CAAG-TTGATGTTGCTGGGGTTTCAA
gi|55894 : tTTTTAAA-TCGAGGCAGGCTGC-TG----CAAAG---CAAG-TTAATGTTACAGGGGTTTCAACA
gi|55895 : tTTTTGAA-TCGAGGCAGGCTACTTA----GAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55897 : TTTTGAA-TCGAGGCAGGCTACTTA----GAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55899 : TTTTAAA-TCGAGACAGGCTACTGA----CAAA----AAAG-TTGATGTTTCAAGGGTTTCAAC
gi|55900 : tTTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGCTACATGGGTTTCAACA
gi|55901 : TTTTGAA-TCGAGGCAGGCTACTTA----CTAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55902 : TTTTTAA-TCGAGGTAGGTTACTTA----CAAA----CAAG-TTGCTGTTGCAGGAGTTTCAAC
gi|55904 : TTTTGAA-TCGGGGCAGGCTACTTA----CAAA----CAAG-CTGTTGTTGCAGGGGTTTCAACA
gi|55905 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55906 : TTTTGAA-TCGAGGCAGACTACTGA----CAAA----CAAGTTTGATGCTACAGGAGTTTGAACA
gi|55907 : TTTTGAA-TCGAGGCAGACTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55908 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55909 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55910 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55911 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55912 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55913 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55914 : TTTTGAA-TCGAGGCAGGCTACTCA----CAAA----CAAG-TTGTTGCTGCAGAGGTTTCAACA
gi|55915 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55916 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55917 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55918 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55919 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55920 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55921 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55924 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55925 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55927 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55930 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55931 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55932 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55933 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGCGTTTCAACA
gi|55936 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGTTTTCAACA
gi|55938 : TTTTAAA-TCGAGACAGGCTACTGA----CAAA----CAAG-TTGATCTTGCAGGAGTTTGAACA
gi|55939 : tTTTTTAA-TCGAAGGAGGCTATTGA----CAAA----CAAG-TTGTTCTTGCAGGGGTTTCAACA
gi|55940 : TTTTAAA-TCGAGGCACTCTACTGA----CAAA----TAAG-TTGATGTTACAGGGATTTCAATA
gi|55941 : tTTTTGAA-TCGAGGCAAGCTACTTA----CAAA----CAAA-TTGTTGTTACAAGGGTTTCAACA
gi|55942 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-T---TGTTGCAGGGGTTTCAACA
gi|55943 : TTTTGAA-TCAAGGCAGGCTACTTA----CAGA----CAAG-CTGTTGTTGCAGGGGTTTCAA
gi|55945 : TTTTGAA-TCGAGGCAGACTACTGA----CAAA----TAAG-TTGATGTTACAAAGGGTTCAGCA
gi|55947 : TTTTGAA-TCTAGTCAGGCTACTTA----CAAA----TAAG-TTGTTGTTACAGGGGTTTCAACA
gi|55948 : TTTTTAG-TCGAGGCAGGCTACTTT----CAAA----CAAG-TTGGTGTTGTAGGGGTTTCAATA
gi|55949 : CGAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTCACAGGGTTTTCAGC
gi|55950 : tctttattgTCTTGAA-TCGAGGCAGGCTACTTAT---CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55951 : TTTTGAA-TCGACGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|55952 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAG----CAAG-TTTTTGTTGCAGGGGTTTCAGCA
gi|55953 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-GTGGTATTTCAGGGGTTTTAACA
gi|55955 : TTTTAAA-TTAAGGCAGACTACTGA----AAAA----CAAG-TTTATGTTACAAGGATTTCAAC
gi|55956 : tTTTTAAA-TCGAGGAATGTTACTGA----CAAA----CAAG-TTGATGTTGCAGGTGTTTCAACA
gi|55957 : tTTTTAAA-TCGAGACTGGCTACTGA----CAAA----CAAG-TTGATGTTGCAGGTGTTTTAAC
gi|56133 : TTTTAA-TCGAGGCAGGCTACTGA----CAAA----CAAG-TTTATGTTGCAGGGGTTTGAACA
gi|56134 : TTTCAAA-TCGAGGCAGGCTACTGA----CAAA----CAGT-TTGATGTTACAGGGGTTTCAACA
gi|56135 : tTTTCAAA-TCGAGACAGGCTGCTGA----CAAA----CAAG-TTTATGTTACAGGGGTTTCAACA
gi|56136 : tTTTTATA-TCAAGGCAGGATACTGA----CAAA----CAAG-TTGATGTTACAAGGATTTTAACA
gi|56138 : AA-TCGAGGCAGGCTACTGA----CAAA----CTAG-TTGATATTACAAGGGTTTCAACA
gi|56139 : ttttaaaTTTTAGA-TCAAAGCAGGCCACTGC----CAAA----CAAG-TTGATGTCGCAGGGGTTTCAACA
gi|56140 : TTTAAA-TCGAGACAGGCTACTGA----CAAA----TAGG-TTGGTGTTACAGGGATTTCAACA
gi|56143 : TTTTAA-TCAAGACAGGCTACTTA----CGAA----TAAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|56145 : TTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|56161 : TTAAA-TCGAAACAGGCTACTGA----TAAA----CAAG-TTGATGTTACAAGGGTTTCAACA
gi|56171 : A-TCAAAGCAGGCTACTGA----CAAA----CAAG-TTGATATTGCAGGGGCTTCACCA
gi|56172 : tgAA-TCGAGACAGCCAACTTA----CAAA----CAAG-TTGATGTTACAGGGGTTTCAACA
gi|56174 : tAA-TCGAGGCAGGCTACTGA----CAAA----CAAA-TTGATGTTACAGTGGTTTCAACA
Alignments
lowQualScore : 0 1111 1111 0 1
lowQualScore : . .... .... . .
lowQualScore : 4 3333 3333 8 1
consensus : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
Reference ( family-85 ) : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
gi|55844 : TTTTTAA-TTAAGACAGGCTACTGA----CAAA----CAAG-TTGATGTTACAGGGGTTTCAACA
gi|55845 : TTTTTAA-CCAAGTCAGGCTACTGA----CAAA----CAAG-TTGATGTTGCAGGGGTTTCAACA
gi|55846 : TTCTAAA-TCAAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTTACATGGGTTTCAACA
gi|55850 : tTTTTTAA-TCAAGGCAGGCTACTGA----CAAATTCGTAAG-TTGGTGTTACAGGGGTTCCAACA
gi|55852 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA----CACG-TTGATGTTACAGGGGTTTCACCA
gi|55853 : tTTTTTAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTAAAGGGGTTTCAACA
gi|55854 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA----CAAG-TCGATGTTGCAGGGCTTTCAACA
gi|55855 : tTTTTAAA-TCGAAGCAGGCTACTGA----CAAA----CAAA-TTGATGTAACAGGGGTTTCAACA
gi|55856 : tTTTTTAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-TTATTGTTGCAGGAGTTTCAACA
gi|55858 : TTTTAAA-TCGAGGCAGGCTACTGA-----AAA----CAAG-TTGATGTTACAGGGTTTTCAACA
gi|55859 : tTTTTTAA-TCGAGGCAGGCTACTGA-----AAA----CAAATTTGATGTTACAGGGTTTTCAACA
gi|55860 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGCTACAGGGGTTTCAACA
gi|55862 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGATTTCAACA
gi|55863 : TTTTGAA-TCGAGGCAAGCTACTTA----CATA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55865 : TTTTGAA-TCAAGACAGACTACTGA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55866 : TTTTAAA-TCGAAGCAGGCTTCTGA----CAAA----CAAG-TTGATGTTACAGGGGCTTCAATA
gi|55868 : tTTTTAAA-TAGAAGCAGGCTATTGA----CAAA----CAAG-TTAATGTTACAGGGGTTTCAACA
gi|55869 : TTTTTAA-TCGAGGCAGGCTACTTATGTACAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55870 : TTTTAAA-TCGAGGCAAGCTACTGA----CAAA----CAAG-TTGGTATTGCAGGGATTTCAACA
gi|55871 : tTTTTTAA-TCGAGGCAGACTACTTA----CAAA----CAAG-TTGCTGTTGCAGTGGTTTCAACA
gi|55872 : TTTTGAA-TCGAGAAAGGCTACTTA----CAAA----CAAG-TTGATGTTGCAGGGGTTTCAACA
gi|55873 : TTTTGAA-TCGAGGCAGGCTACTTA----TATA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55874 : TTTTGAA-TCGAGGCAGGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55875 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTACAGGGGTTTCAACA
gi|55876 : TTTTAAT-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGATATTACAGGGGTGTTAACA
gi|55878 : tTTTTGAA-TCGAGACAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55879 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAAGGGTTTCAACA
gi|55881 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGATTTCAACA
gi|55882 : TTTTTAA-TCGAGGCAGGCTACTTA----CAGA----CAAG-TTGTTGTTGCTGGGGTTTCAACA
gi|55883 : TTTTAAA-TCGAGACAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55885 : tTTTTAAA-T-GAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTTCCAGGAGTTTGAACA
gi|55886 : tTTTTAAA-TCAAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55887 : tTTTTTAA-TCGAGGCAGGCTACTTA----CAAA----TAAG-TTGTTGATGCAGGGGTTTCAACA
gi|55888 : TTTTAAAATCGAGACAGGTTACTGA----CAAA----CAAG-TTGATGTTGCAAGAGTTTCAACA
gi|55890 : tTTTTTAA-TCGAGGCAAGTTACTTA----CAGA----CAAG-TTGCTGTTGCAGGGGTTTCAACA
gi|55891 : TTTTCAA-TCGAGGCAGGTTACTTA----CAAA----CAAG-TTGCTGTTGCAGGGATTTCAACA
gi|55892 : TTTTAAA-TCGAGGCAGGCTACAGA----CAAA----CAAG-TTGATGTTGCTGGGGTTTCAA
gi|55894 : tTTTTAAA-TCGAGGCAGGCTGC-TG----CAAAG---CAAG-TTAATGTTACAGGGGTTTCAACA
gi|55895 : tTTTTGAA-TCGAGGCAGGCTACTTA----GAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55897 : TTTTGAA-TCGAGGCAGGCTACTTA----GAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55899 : TTTTAAA-TCGAGACAGGCTACTGA----CAAA----AAAG-TTGATGTTTCAAGGGTTTCAAC
gi|55900 : tTTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGCTACATGGGTTTCAACA
gi|55901 : TTTTGAA-TCGAGGCAGGCTACTTA----CTAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55902 : TTTTTAA-TCGAGGTAGGTTACTTA----CAAA----CAAG-TTGCTGTTGCAGGAGTTTCAAC
gi|55904 : TTTTGAA-TCGGGGCAGGCTACTTA----CAAA----CAAG-CTGTTGTTGCAGGGGTTTCAACA
gi|55905 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55906 : TTTTGAA-TCGAGGCAGACTACTGA----CAAA----CAAGTTTGATGCTACAGGAGTTTGAACA
gi|55907 : TTTTGAA-TCGAGGCAGACTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55908 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55909 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55910 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55911 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55912 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55913 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55914 : TTTTGAA-TCGAGGCAGGCTACTCA----CAAA----CAAG-TTGTTGCTGCAGAGGTTTCAACA
gi|55915 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55916 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55917 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55918 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55919 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55920 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55921 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55924 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55925 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55927 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55930 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55931 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55932 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55933 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGCGTTTCAACA
gi|55936 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGTTTTCAACA
gi|55938 : TTTTAAA-TCGAGACAGGCTACTGA----CAAA----CAAG-TTGATCTTGCAGGAGTTTGAACA
gi|55939 : tTTTTTAA-TCGAAGGAGGCTATTGA----CAAA----CAAG-TTGTTCTTGCAGGGGTTTCAACA
gi|55940 : TTTTAAA-TCGAGGCACTCTACTGA----CAAA----TAAG-TTGATGTTACAGGGATTTCAATA
gi|55941 : tTTTTGAA-TCGAGGCAAGCTACTTA----CAAA----CAAA-TTGTTGTTACAAGGGTTTCAACA
gi|55942 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-T---TGTTGCAGGGGTTTCAACA
gi|55943 : TTTTGAA-TCAAGGCAGGCTACTTA----CAGA----CAAG-CTGTTGTTGCAGGGGTTTCAA
gi|55945 : TTTTGAA-TCGAGGCAGACTACTGA----CAAA----TAAG-TTGATGTTACAAAGGGTTCAGCA
gi|55947 : TTTTGAA-TCTAGTCAGGCTACTTA----CAAA----TAAG-TTGTTGTTACAGGGGTTTCAACA
gi|55948 : TTTTTAG-TCGAGGCAGGCTACTTT----CAAA----CAAG-TTGGTGTTGTAGGGGTTTCAATA
gi|55949 : CGAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTCACAGGGTTTTCAGC
gi|55950 : tctttattgTCTTGAA-TCGAGGCAGGCTACTTAT---CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55951 : TTTTGAA-TCGACGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|55952 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAG----CAAG-TTTTTGTTGCAGGGGTTTCAGCA
gi|55953 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-GTGGTATTTCAGGGGTTTTAACA
gi|55955 : TTTTAAA-TTAAGGCAGACTACTGA----AAAA----CAAG-TTTATGTTACAAGGATTTCAAC
gi|55956 : tTTTTAAA-TCGAGGAATGTTACTGA----CAAA----CAAG-TTGATGTTGCAGGTGTTTCAACA
gi|55957 : tTTTTAAA-TCGAGACTGGCTACTGA----CAAA----CAAG-TTGATGTTGCAGGTGTTTTAAC
gi|56133 : TTTTAA-TCGAGGCAGGCTACTGA----CAAA----CAAG-TTTATGTTGCAGGGGTTTGAACA
gi|56134 : TTTCAAA-TCGAGGCAGGCTACTGA----CAAA----CAGT-TTGATGTTACAGGGGTTTCAACA
gi|56135 : tTTTCAAA-TCGAGACAGGCTGCTGA----CAAA----CAAG-TTTATGTTACAGGGGTTTCAACA
gi|56136 : tTTTTATA-TCAAGGCAGGATACTGA----CAAA----CAAG-TTGATGTTACAAGGATTTTAACA
gi|56138 : AA-TCGAGGCAGGCTACTGA----CAAA----CTAG-TTGATATTACAAGGGTTTCAACA
gi|56139 : ttttaaaTTTTAGA-TCAAAGCAGGCCACTGC----CAAA----CAAG-TTGATGTCGCAGGGGTTTCAACA
gi|56140 : TTTAAA-TCGAGACAGGCTACTGA----CAAA----TAGG-TTGGTGTTACAGGGATTTCAACA
gi|56143 : TTTTAA-TCAAGACAGGCTACTTA----CGAA----TAAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|56145 : TTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|56161 : TTAAA-TCGAAACAGGCTACTGA----TAAA----CAAG-TTGATGTTACAAGGGTTTCAACA
gi|56171 : A-TCAAAGCAGGCTACTGA----CAAA----CAAG-TTGATATTGCAGGGGCTTCACCA
gi|56172 : tgAA-TCGAGACAGCCAACTTA----CAAA----CAAG-TTGATGTTACAGGGGTTTCAACA
gi|56174 : tAA-TCGAGGCAGGCTACTGA----CAAA----CAAA-TTGATGTTACAGTGGTTTCAACA
blockSeqs : TGTA TTCG A
blockSeqs : T G A
blockSeqs : . . G
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . G
blockSeqs : . . C
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . C
blockSeqs : . . C
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . C
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . G
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . G
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . G
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . .
blockSeqCons :
originalCons : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
finalCons : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
Alignments
lowQualScore : 0 1111 1111 0 1
lowQualScore : . .... .... . .
lowQualScore : 4 3333 3333 8 1
consensus : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
Reference ( family-85 ) : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGNTGTTGCAGGGGTTTCAACA
gi|55844 : TTTTTAA-TTAAGACAGGCTACTGA----CAAA----CAAG-TTGATGTTACAGGGGTTTCAACA
gi|55845 : TTTTTAA-CCAAGTCAGGCTACTGA----CAAA----CAAG-TTGATGTTGCAGGGGTTTCAACA
gi|55846 : TTCTAAA-TCAAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTTACATGGGTTTCAACA
gi|55850 : tTTTTTAA-TCAAGGCAGGCTACTGA----CAAATTCGTAAG-TTGGTGTTACAGGGGTTCCAACA
gi|55852 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA----CACG-TTGATGTTACAGGGGTTTCACCA
gi|55853 : tTTTTTAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTAAAGGGGTTTCAACA
gi|55854 : TTTTAAA-TCGAGGCAGGCTACTGA----CAAA----CAAG-TCGATGTTGCAGGGCTTTCAACA
gi|55855 : tTTTTAAA-TCGAAGCAGGCTACTGA----CAAA----CAAA-TTGATGTAACAGGGGTTTCAACA
gi|55856 : tTTTTTAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-TTATTGTTGCAGGAGTTTCAACA
gi|55858 : TTTTAAA-TCGAGGCAGGCTACTGA-----AAA----CAAG-TTGATGTTACAGGGTTTTCAACA
gi|55859 : tTTTTTAA-TCGAGGCAGGCTACTGA-----AAA----CAAATTTGATGTTACAGGGTTTTCAACA
gi|55860 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGCTACAGGGGTTTCAACA
gi|55862 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGATTTCAACA
gi|55863 : TTTTGAA-TCGAGGCAAGCTACTTA----CATA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55865 : TTTTGAA-TCAAGACAGACTACTGA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55866 : TTTTAAA-TCGAAGCAGGCTTCTGA----CAAA----CAAG-TTGATGTTACAGGGGCTTCAATA
gi|55868 : tTTTTAAA-TAGAAGCAGGCTATTGA----CAAA----CAAG-TTAATGTTACAGGGGTTTCAACA
gi|55869 : TTTTTAA-TCGAGGCAGGCTACTTATGTACAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55870 : TTTTAAA-TCGAGGCAAGCTACTGA----CAAA----CAAG-TTGGTATTGCAGGGATTTCAACA
gi|55871 : tTTTTTAA-TCGAGGCAGACTACTTA----CAAA----CAAG-TTGCTGTTGCAGTGGTTTCAACA
gi|55872 : TTTTGAA-TCGAGAAAGGCTACTTA----CAAA----CAAG-TTGATGTTGCAGGGGTTTCAACA
gi|55873 : TTTTGAA-TCGAGGCAGGCTACTTA----TATA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55874 : TTTTGAA-TCGAGGCAGGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55875 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTACAGGGGTTTCAACA
gi|55876 : TTTTAAT-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGATATTACAGGGGTGTTAACA
gi|55878 : tTTTTGAA-TCGAGACAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55879 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAAGGGTTTCAACA
gi|55881 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGATTTCAACA
gi|55882 : TTTTTAA-TCGAGGCAGGCTACTTA----CAGA----CAAG-TTGTTGTTGCTGGGGTTTCAACA
gi|55883 : TTTTAAA-TCGAGACAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55885 : tTTTTAAA-T-GAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTTCCAGGAGTTTGAACA
gi|55886 : tTTTTAAA-TCAAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55887 : tTTTTTAA-TCGAGGCAGGCTACTTA----CAAA----TAAG-TTGTTGATGCAGGGGTTTCAACA
gi|55888 : TTTTAAAATCGAGACAGGTTACTGA----CAAA----CAAG-TTGATGTTGCAAGAGTTTCAACA
gi|55890 : tTTTTTAA-TCGAGGCAAGTTACTTA----CAGA----CAAG-TTGCTGTTGCAGGGGTTTCAACA
gi|55891 : TTTTCAA-TCGAGGCAGGTTACTTA----CAAA----CAAG-TTGCTGTTGCAGGGATTTCAACA
gi|55892 : TTTTAAA-TCGAGGCAGGCTACAGA----CAAA----CAAG-TTGATGTTGCTGGGGTTTCAA
gi|55894 : tTTTTAAA-TCGAGGCAGGCTGC-TG----CAAAG---CAAG-TTAATGTTACAGGGGTTTCAACA
gi|55895 : tTTTTGAA-TCGAGGCAGGCTACTTA----GAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55897 : TTTTGAA-TCGAGGCAGGCTACTTA----GAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55899 : TTTTAAA-TCGAGACAGGCTACTGA----CAAA----AAAG-TTGATGTTTCAAGGGTTTCAAC
gi|55900 : tTTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-TTGTTGCTACATGGGTTTCAACA
gi|55901 : TTTTGAA-TCGAGGCAGGCTACTTA----CTAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55902 : TTTTTAA-TCGAGGTAGGTTACTTA----CAAA----CAAG-TTGCTGTTGCAGGAGTTTCAAC
gi|55904 : TTTTGAA-TCGGGGCAGGCTACTTA----CAAA----CAAG-CTGTTGTTGCAGGGGTTTCAACA
gi|55905 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55906 : TTTTGAA-TCGAGGCAGACTACTGA----CAAA----CAAGTTTGATGCTACAGGAGTTTGAACA
gi|55907 : TTTTGAA-TCGAGGCAGACTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55908 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55909 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55910 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55911 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55912 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55913 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55914 : TTTTGAA-TCGAGGCAGGCTACTCA----CAAA----CAAG-TTGTTGCTGCAGAGGTTTCAACA
gi|55915 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55916 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55917 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55918 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55919 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55920 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55921 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55924 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55925 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55927 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55930 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55931 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55932 : TTTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55933 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGCGTTTCAACA
gi|55936 : TTTTTAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGTTTTCAACA
gi|55938 : TTTTAAA-TCGAGACAGGCTACTGA----CAAA----CAAG-TTGATCTTGCAGGAGTTTGAACA
gi|55939 : tTTTTTAA-TCGAAGGAGGCTATTGA----CAAA----CAAG-TTGTTCTTGCAGGGGTTTCAACA
gi|55940 : TTTTAAA-TCGAGGCACTCTACTGA----CAAA----TAAG-TTGATGTTACAGGGATTTCAATA
gi|55941 : tTTTTGAA-TCGAGGCAAGCTACTTA----CAAA----CAAA-TTGTTGTTACAAGGGTTTCAACA
gi|55942 : TTTTGAA-TCGAGGCAGGCTACTTA----CAAA----CAAG-T---TGTTGCAGGGGTTTCAACA
gi|55943 : TTTTGAA-TCAAGGCAGGCTACTTA----CAGA----CAAG-CTGTTGTTGCAGGGGTTTCAA
gi|55945 : TTTTGAA-TCGAGGCAGACTACTGA----CAAA----TAAG-TTGATGTTACAAAGGGTTCAGCA
gi|55947 : TTTTGAA-TCTAGTCAGGCTACTTA----CAAA----TAAG-TTGTTGTTACAGGGGTTTCAACA
gi|55948 : TTTTTAG-TCGAGGCAGGCTACTTT----CAAA----CAAG-TTGGTGTTGTAGGGGTTTCAATA
gi|55949 : CGAGGCAGGCTACTGA----CAAA----CAAG-TTGATGTCACAGGGTTTTCAGC
gi|55950 : tctttattgTCTTGAA-TCGAGGCAGGCTACTTAT---CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|55951 : TTTTGAA-TCGACGCAGGCTACTTA----CAAA----CAAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|55952 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAG----CAAG-TTTTTGTTGCAGGGGTTTCAGCA
gi|55953 : TTTTGAA-TCAAGGCAGGCTACTTA----CAAA----CAAG-GTGGTATTTCAGGGGTTTTAACA
gi|55955 : TTTTAAA-TTAAGGCAGACTACTGA----AAAA----CAAG-TTTATGTTACAAGGATTTCAAC
gi|55956 : tTTTTAAA-TCGAGGAATGTTACTGA----CAAA----CAAG-TTGATGTTGCAGGTGTTTCAACA
gi|55957 : tTTTTAAA-TCGAGACTGGCTACTGA----CAAA----CAAG-TTGATGTTGCAGGTGTTTTAAC
gi|56133 : TTTTAA-TCGAGGCAGGCTACTGA----CAAA----CAAG-TTTATGTTGCAGGGGTTTGAACA
gi|56134 : TTTCAAA-TCGAGGCAGGCTACTGA----CAAA----CAGT-TTGATGTTACAGGGGTTTCAACA
gi|56135 : tTTTCAAA-TCGAGACAGGCTGCTGA----CAAA----CAAG-TTTATGTTACAGGGGTTTCAACA
gi|56136 : tTTTTATA-TCAAGGCAGGATACTGA----CAAA----CAAG-TTGATGTTACAAGGATTTTAACA
gi|56138 : AA-TCGAGGCAGGCTACTGA----CAAA----CTAG-TTGATATTACAAGGGTTTCAACA
gi|56139 : ttttaaaTTTTAGA-TCAAAGCAGGCCACTGC----CAAA----CAAG-TTGATGTCGCAGGGGTTTCAACA
gi|56140 : TTTAAA-TCGAGACAGGCTACTGA----CAAA----TAGG-TTGGTGTTACAGGGATTTCAACA
gi|56143 : TTTTAA-TCAAGACAGGCTACTTA----CGAA----TAAG-TTGTTGTTGCAGGGGTTTCAGCA
gi|56145 : TTTGAA-TCGAGGCAAGCTACTTA----CAGA----CAAG-TTGTTGTTGCAGGGGTTTCAACA
gi|56161 : TTAAA-TCGAAACAGGCTACTGA----TAAA----CAAG-TTGATGTTACAAGGGTTTCAACA
gi|56171 : A-TCAAAGCAGGCTACTGA----CAAA----CAAG-TTGATATTGCAGGGGCTTCACCA
gi|56172 : tgAA-TCGAGACAGCCAACTTA----CAAA----CAAG-TTGATGTTACAGGGGTTTCAACA
gi|56174 : tAA-TCGAGGCAGGCTACTGA----CAAA----CAAA-TTGATGTTACAGTGGTTTCAACA