lowQualScore : 111111 11
lowQualScore : 33 2 2 111111 2 2 2 2 66 2 2 11 444 7 2 2 2 2
lowQualScore : .. . . ...... . . . . .. . . .. ... . . . . .
lowQualScore : 99 9 9 111111 9 9 9 9 88 9 7 77 777 1 7 7 7 7
consensus : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
Reference ( gi|114311 ) : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114310 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114313 : TGTTT--CCGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCAGAG--TGTT---TGTTGAAT-A-CA-C-AACTT
gi|114312 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA----TTC-CCTCA-ACGTTCCGGAG--TTTTTCGTGTGGAAT-A-CA-CAAACTT
gi|114314 : TGTTT--CGGAA-T-A------T-TGAT-AT-TCA-T--TTC-CCTCA-ACGTTCCGGAGT-TTTT---TGT-GAAT-A-CA-C-AACTT
gi|114320 : TGTTT--CGGAA-TTA------TCTGAT-CA-TCA-T--TTC-CCTCA-ACG-TCCGGAG--TTTT---TGTGGAATGA-CATC-AACT
gi|114315 : TGTTT--CGGGA-T-A------T-TGAT-CA-TCT-T--GTC-CCTTA-ACGTTCCGGAG--TTTT---TGTTCAAT-A-CG-C-AACTT
gi|114316 : TGTTT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-CCTAA-ACGTTACGGAG---ATT---TGTTGAAT-A-CA-C-AACTT
gi|114317 : TGTTT--CGAAA-T-ACACGTAT-TGAT-CA-TAA-T--TTC-CCTCA-GCGTTCCGGAG--TTTT---TGTTGAAT-A-CA-C-AA
gi|114318 : TGTTTGACGGAA-T-A------T-TGATTCA-TCAATA-TTC-CCTCA-ACGTTCCGGAGT-TTTT---TGTTGAAT-A-CA-C-AACTT
gi|114319 : TATTT--CGGAA-T-A------T-TGAT-CA-TCT-C--TTC-CCTCA-ATGTTCCGGAG--TTAC---TGCTGAAT-A-CA-C-GACTT
gi|114322 : TGTTT--CGGAA-T-AC-----T-TGAT-CAATCA-TCTTTCGCCTCACAC-TTCCGGAGCTTTCT---TGTGGGAC-ATCA-C-AACCT
gi|114321 : TATTT--CAGAA-T-A------T-TAAT-AA-TCT-T--TTC-CCTCA-ACGACCCGATGC-TTTT---TTTTTAAT-A-CA-C-CACTT
gi|114323 : TTT--CGGAAAT-A------T-T-AT-AC-TCA-T--TTC-CCTCA-ACGTTCCG--G--T--------TAGATT-A-CA-C-AACTT
gi|114324 : TT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-C-TCA-ACGTTCCGGAG--TTGT---TGTGGAAT-A-CA-C-AACTT
gi|114325 : A-ACGTTCCGGAA--TTTT---TGTAGAAT-A-CA-C-AACTT
Alignments
lowQualScore : 111111
lowQualScore : 33 2 2 000000 2 2 2 2 66 2 2 88 444 1 2 2 2 2
lowQualScore : .. . . ...... . . . . .. . . .. ... . . . . .
lowQualScore : 77 7 7 333333 7 7 7 7 33 7 5 44 444 0 5 5 5 5
consensus : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
Reference ( family-848 ) : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
gi|114310 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114311 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114312 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA----TTC-CCTCA-ACGTTCCGGAG--TTTTTCGTGTGGAAT-A-CA-CAAACTT
gi|114313 : TGTTT--CCGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCAGAG--TGTT---TGTTGAAT-A-CA-C-AACTT
gi|114314 : TGTTT--CGGAA-T-A------T-TGAT-AT-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TTGTGAAT-A-CA-C-AACTT
gi|114315 : TGTTT--CGGGA-T-A------T-TGAT-CA-TCT-T--GTC-CCTTA-ACGTTCCGGAG--TTTT---TGTTCAAT-A-CG-C-AACTT
gi|114316 : TGTTT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-CCTAA-ACGTTACGGAG---ATT---TGTTGAAT-A-CA-C-AACTT
gi|114317 : TGTTT--CGAAA-T-ACACGTAT-TGAT-CA-TAA-T--TTC-CCTCA-GCGTTCCGGAG--TTTT---TGTTGAAT-A-CA-C-AA
gi|114318 : TGTTTGACGGAA-T-A------T-TGATTCA-TCAATA-TTC-CCTCA-ACGTTCCGGAGT-TTTT---TGTTGAAT-A-CA-C-AACTT
gi|114319 : TATTT--CGGAA-T-A------T-TGAT-CA-TCT-C--TTC-CCTCA-ATGTTCCGGAG--TTAC---TGCTGAAT-A-CA-C-GACTT
gi|114320 : TGTTT--CGGAA-TTA------TCTGAT-CA-TCA-T--TTC-CCTCA-ACG-TCCGGAG--TTTT---TGTGGAATGA-CATC-AACT
gi|114321 : TATTT--CAGAA-T-A------T-TAAT-AA-TCT-T--TTC-CCTCA-ACGACCCGATGC-TTTT---TTTTTAAT-A-CA-C-CACTT
gi|114322 : TGTTT--CGGAA-T-AC-----T-TGAT-CAATCA-TCTTTCGCCTCACAC-TTCCGGAGCTTTCT---TGTGGGAC-ATCA-C-AACCT
gi|114323 : TTT--CGGAAAT-A------T-T-AT-AC-TCA-T--TTC-CCTCA-ACGTTCCG--G--T--------TAGATT-A-CA-C-AACTT
gi|114324 : TT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-C-TCA-ACGTTCCGGAG--TTGT---TGTGGAAT-A-CA-C-AACTT
gi|114325 : A-ACGTTCCGGAA--TTTT---TGTAGAAT-A-CA-C-AACTT
Alignments
lowQualScore : 111111
lowQualScore : 33 2 2 000000 2 2 2 2 66 2 2 88 444 1 2 2 2 2
lowQualScore : .. . . ...... . . . . .. . . .. ... . . . . .
lowQualScore : 77 7 7 333333 7 7 7 7 33 7 5 44 444 0 5 5 5 5
consensus : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
Reference ( family-848 ) : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
gi|114310 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114311 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114312 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA----TTC-CCTCA-ACGTTCCGGAG--TTTTTCGTGTGGAAT-A-CA-CAAACTT
gi|114313 : TGTTT--CCGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCAGAG--TGTT---TGTTGAAT-A-CA-C-AACTT
gi|114314 : TGTTT--CGGAA-T-A------T-TGAT-AT-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TTGTGAAT-A-CA-C-AACTT
gi|114315 : TGTTT--CGGGA-T-A------T-TGAT-CA-TCT-T--GTC-CCTTA-ACGTTCCGGAG--TTTT---TGTTCAAT-A-CG-C-AACTT
gi|114316 : TGTTT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-CCTAA-ACGTTACGGAG---ATT---TGTTGAAT-A-CA-C-AACTT
gi|114317 : TGTTT--CGAAA-T-ACACGTAT-TGAT-CA-TAA-T--TTC-CCTCA-GCGTTCCGGAG--TTTT---TGTTGAAT-A-CA-C-AA
gi|114318 : TGTTTGACGGAA-T-A------T-TGATTCA-TCAATA-TTC-CCTCA-ACGTTCCGGAGT-TTTT---TGTTGAAT-A-CA-C-AACTT
gi|114319 : TATTT--CGGAA-T-A------T-TGAT-CA-TCT-C--TTC-CCTCA-ATGTTCCGGAG--TTAC---TGCTGAAT-A-CA-C-GACTT
gi|114320 : TGTTT--CGGAA-TTA------TCTGAT-CA-TCA-T--TTC-CCTCA-ACG-TCCGGAG--TTTT---TGTGGAATGA-CATC-AACT
gi|114321 : TATTT--CAGAA-T-A------T-TAAT-AA-TCT-T--TTC-CCTCA-ACGACCCGATGC-TTTT---TTTTTAAT-A-CA-C-CACTT
gi|114322 : TGTTT--CGGAA-T-AC-----T-TGAT-CAATCA-TCTTTCGCCTCACAC-TTCCGGAGCTTTCT---TGTGGGAC-ATCA-C-AACCT
gi|114323 : TTT--CGGAAAT-A------T-T-AT-AC-TCA-T--TTC-CCTCA-ACGTTCCG--G--T--------TAGATT-A-CA-C-AACTT
gi|114324 : TT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-C-TCA-ACGTTCCGGAG--TTGT---TGTGGAAT-A-CA-C-AACTT
gi|114325 : A-ACGTTCCGGAA--TTTT---TGTAGAAT-A-CA-C-AACTT
blockSeqs : GA A T CACGTA C T A A CT G C CT TCG G G T T A
blockSeqs : . . . C . . . . A . . T . G . . . .
blockSeqs : . . . . . . . . . . . C . T . . . .
blockSeqs : . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . G . . . .
blockSeqs : . . . A . . . .
blockSeqCons :
originalCons : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
finalCons : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
Alignments
lowQualScore : 111111
lowQualScore : 33 2 2 000000 2 2 2 2 66 2 2 88 444 1 2 2 2 2
lowQualScore : .. . . ...... . . . . .. . . .. ... . . . . .
lowQualScore : 77 7 7 333333 7 7 7 7 33 7 5 44 444 0 5 5 5 5
consensus : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
Reference ( family-848 ) : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTNGAAT-A-CA-C-AACTT
gi|114310 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114311 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TGTGGAAT-A-CA-C-AACTT
gi|114312 : TGTTT--CGGAA-T-A------T-TGAT-CA-TCA----TTC-CCTCA-ACGTTCCGGAG--TTTTTCGTGTGGAAT-A-CA-CAAACTT
gi|114313 : TGTTT--CCGAA-T-A------T-TGAT-CA-TCA-T--TTC-CCTCA-ACGTTCCAGAG--TGTT---TGTTGAAT-A-CA-C-AACTT
gi|114314 : TGTTT--CGGAA-T-A------T-TGAT-AT-TCA-T--TTC-CCTCA-ACGTTCCGGAG--TTTT---TTGTGAAT-A-CA-C-AACTT
gi|114315 : TGTTT--CGGGA-T-A------T-TGAT-CA-TCT-T--GTC-CCTTA-ACGTTCCGGAG--TTTT---TGTTCAAT-A-CG-C-AACTT
gi|114316 : TGTTT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-CCTAA-ACGTTACGGAG---ATT---TGTTGAAT-A-CA-C-AACTT
gi|114317 : TGTTT--CGAAA-T-ACACGTAT-TGAT-CA-TAA-T--TTC-CCTCA-GCGTTCCGGAG--TTTT---TGTTGAAT-A-CA-C-AA
gi|114318 : TGTTTGACGGAA-T-A------T-TGATTCA-TCAATA-TTC-CCTCA-ACGTTCCGGAGT-TTTT---TGTTGAAT-A-CA-C-AACTT
gi|114319 : TATTT--CGGAA-T-A------T-TGAT-CA-TCT-C--TTC-CCTCA-ATGTTCCGGAG--TTAC---TGCTGAAT-A-CA-C-GACTT
gi|114320 : TGTTT--CGGAA-TTA------TCTGAT-CA-TCA-T--TTC-CCTCA-ACG-TCCGGAG--TTTT---TGTGGAATGA-CATC-AACT
gi|114321 : TATTT--CAGAA-T-A------T-TAAT-AA-TCT-T--TTC-CCTCA-ACGACCCGATGC-TTTT---TTTTTAAT-A-CA-C-CACTT
gi|114322 : TGTTT--CGGAA-T-AC-----T-TGAT-CAATCA-TCTTTCGCCTCACAC-TTCCGGAGCTTTCT---TGTGGGAC-ATCA-C-AACCT
gi|114323 : TTT--CGGAAAT-A------T-T-AT-AC-TCA-T--TTC-CCTCA-ACGTTCCG--G--T--------TAGATT-A-CA-C-AACTT
gi|114324 : TT--CGGAA-T-A------T-TAAT-CA-TCA-T--TTC-C-TCA-ACGTTCCGGAG--TTGT---TGTGGAAT-A-CA-C-AACTT
gi|114325 : A-ACGTTCCGGAA--TTTT---TGTAGAAT-A-CA-C-AACTT