lowQualScore : 1
lowQualScore : 2 33 5 2 2 2 66 2 2 2 1 2 44
lowQualScore : . .. . . . . .. . . . . . ..
lowQualScore : 7 77 3 8 7 7 22 7 7 7 2 8 22
consensus : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
Reference ( gi|18956 ) : AATG-AGT--A-TGCAGGTGAGATAGAAGG-CTCCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18957 : AATG-AGT--A-TGCAGGAGAGATAGAAGG-CCGCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18958 : AATG-AGT--A-TGCAGGTGAGATAAGAGG-CTCCCAGGAC-TACTCA-T-TTCCCCGCCCT-AGTT--TGGGG
gi|18960 : AATG-AGT--A-TGCAGACAAGATAGAGGG-CTCCCAGAAC-TA-TCA-T-AT-TCCGCCCTCAGTT--TGGGG
gi|18955 : AATG-AGT--AATGCAGGTAAGATAGAGGGATTCCCAGGAC-TA-TCA-T-TT-CCCAC-CT-AGTT--TGGG
gi|18954 : AATG-ATT--AGTGCAG-TAAGATAGAGGG-CTCCCAGGAC-TA--CA-TCTT-CCCACCCTCAGTT--TGGGG
gi|18961 : AATA-AGT--A-TGTCGGTAAGATAGGAGG-CTCCCAGGAC-TA-CCA-T-TT-CCCGGCCTCAGTT--AAGGG
gi|18962 : AATG-AGT--A-TGCAGGTAAGATAAGAAG-CCCCTAGGAC-TA-TCA-T-TT-TCCACCCT
gi|18959 : AAAG-AGT--A--GCAGCTGAGATAGAGGG-CTTCCA-GAC-TA-TCA-T-TT-CCCGCCCT-AGTT--GGG
gi|18963 : AATGGAGTCAA-TGCAGGTAAGATAGAGGG-TTCCCAGGAC-TA-TCA-T-TT-
gi|18965 : AATG-AAT--A-TGCAGATAAGATAGAAGA-A-CCTA-GACGTA-TCA-T-TT--CTGTCCTCAGTT--TGGGt
gi|18964 : AATT-AGT--A-TGCATACAAGATATAGGA-CACCAAGGAC-TA-ACA-T-TT-ACCGCCCTCAGAT--TGGGG
gi|18966 : AATG-ATT--A-TGCAGGCAGGAAAGGGAA-TCCCTGGGAC-TA-TGA-T-TT-CTTGCCCTCAGTT--TGGAG
gi|18967 : ATG--GT--A-TGCAGGTAAGATAAGAGG-CTCCCA-GAC-TA--AA-T-TT-CCCAC-CTCAGTT--GGGG
gi|18968 : ATA-AGT--A-TGCATGTAAGATAGGGGA-CCCCAGGGAC-TA-TTA-T-TT-TCCGTGTTTAGTT--TGGGG
gi|18969 : TG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA--CATT-TT-CCCACACTCAGTTTATGGGG
Alignments
lowQualScore : 2 33 5 2 2 55 2 2 2 33
lowQualScore : . .. . . . .. . . . ..
lowQualScore : 5 44 0 5 5 22 5 5 5 99
consensus : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
Reference ( family-847 ) : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
gi|18954 : AATG-ATT--AGTGCAG-TAAGATAGAGGG-CTCCCAGGAC-TA--CA-TCTT-CCCACCCTCAGTT--TGGGG
gi|18955 : AATG-AGT--AATGCAGGTAAGATAGAGGGATTCCCAGGAC-TA-TCA-T-TT-CCCACC--TAGTT--TGGG
gi|18956 : AATG-AGT--A-TGCAGGTGAGATAGAAGG-CTCCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18957 : AATG-AGT--A-TGCAGGAGAGATAGAAGG-CCGCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18958 : AATG-AGT--A-TGCAGGTGAGATAAGAGG-CTCCCAGGAC-TACTCA-T-TTCCCCGCCCT-AGTT--TGGGG
gi|18959 : AAAG-AGT--A--GCAGCTGAGATAGAGGG-CTTCCAG-AC-TA-TCA-T-TT-CCCGCCCT-AGTT--GGG
gi|18960 : AATG-AGT--A-TGCAGACAAGATAGAGGG-CTCCCAGAAC-TA-TCA-T-AT-TCCGCCCTCAGTT--TGGGG
gi|18961 : AATA-AGT--A-TGTCGGTAAGATAGGAGG-CTCCCAGGAC-TA-CCA-T-TT-CCCGGCCTCAGTT--AAGGG
gi|18962 : AATG-AGT--A-TGCAGGTAAGATAAGAAG-CCCCTAGGAC-TA-TCA-T-TT-TCCACCCT
gi|18963 : AATGGAGTCAA-TGCAGGTAAGATAGAGGG-TTCCCAGGAC-TA-TCA-T-TT-
gi|18964 : AATT-AGT--A-TGCATACAAGATATAGGA-CACCAAGGAC-TA-ACA-T-TT-ACCGCCCTCAGAT--TGGGGt
gi|18965 : AATG-AAT--A-TGCAGATAAGATAGAAGA-A-CCTA-GACGTA-TCA-T-TT--CTGTCCTCAGTT--TGGG
gi|18966 : AATG-ATT--A-TGCAGGCAGGAAAGGGAA-TCCCTGGGAC-TA-TGA-T-TT-CTTGCCCTCAGTT--TGGAG
gi|18967 : ATG--GT--A-TGCAGGTAAGATAAGAGG-CTCCCA-GAC-TA--AA-T-TT-CCCA-CCTCAGTT--GGGG
gi|18968 : ATA-AGT--A-TGCATGTAAGATAGGGGA-CCCCAGGGAC-TA-TTA-T-TT-TCCGTGTTTAGTT--TGGGG
gi|18969 : TG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA--CATT-TT-CCCACACTCAGTTTATGGGG
Alignments
lowQualScore : 2 33 5 2 2 55 2 2 2 33
lowQualScore : . .. . . . .. . . . ..
lowQualScore : 5 44 0 5 5 22 5 5 5 99
consensus : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
Reference ( family-847 ) : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
gi|18954 : AATG-ATT--AGTGCAG-TAAGATAGAGGG-CTCCCAGGAC-TA--CA-TCTT-CCCACCCTCAGTT--TGGGG
gi|18955 : AATG-AGT--AATGCAGGTAAGATAGAGGGATTCCCAGGAC-TA-TCA-T-TT-CCCACC--TAGTT--TGGG
gi|18956 : AATG-AGT--A-TGCAGGTGAGATAGAAGG-CTCCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18957 : AATG-AGT--A-TGCAGGAGAGATAGAAGG-CCGCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18958 : AATG-AGT--A-TGCAGGTGAGATAAGAGG-CTCCCAGGAC-TACTCA-T-TTCCCCGCCCT-AGTT--TGGGG
gi|18959 : AAAG-AGT--A--GCAGCTGAGATAGAGGG-CTTCCAG-AC-TA-TCA-T-TT-CCCGCCCT-AGTT--GGG
gi|18960 : AATG-AGT--A-TGCAGACAAGATAGAGGG-CTCCCAGAAC-TA-TCA-T-AT-TCCGCCCTCAGTT--TGGGG
gi|18961 : AATA-AGT--A-TGTCGGTAAGATAGGAGG-CTCCCAGGAC-TA-CCA-T-TT-CCCGGCCTCAGTT--AAGGG
gi|18962 : AATG-AGT--A-TGCAGGTAAGATAAGAAG-CCCCTAGGAC-TA-TCA-T-TT-TCCACCCT
gi|18963 : AATGGAGTCAA-TGCAGGTAAGATAGAGGG-TTCCCAGGAC-TA-TCA-T-TT-
gi|18964 : AATT-AGT--A-TGCATACAAGATATAGGA-CACCAAGGAC-TA-ACA-T-TT-ACCGCCCTCAGAT--TGGGGt
gi|18965 : AATG-AAT--A-TGCAGATAAGATAGAAGA-A-CCTA-GACGTA-TCA-T-TT--CTGTCCTCAGTT--TGGG
gi|18966 : AATG-ATT--A-TGCAGGCAGGAAAGGGAA-TCCCTGGGAC-TA-TGA-T-TT-CTTGCCCTCAGTT--TGGAG
gi|18967 : ATG--GT--A-TGCAGGTAAGATAAGAGG-CTCCCA-GAC-TA--AA-T-TT-CCCA-CCTCAGTT--GGGG
gi|18968 : ATA-AGT--A-TGCATGTAAGATAGGGGA-CCCCAGGGAC-TA-TTA-T-TT-TCCGTGTTTAGTT--TGGGG
gi|18969 : TG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA--CATT-TT-CCCACACTCAGTTTATGGGG
blockSeqs : G CA A A G CT T . C TA
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . C . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . A . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : T*
originalCons : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
finalCons : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TAT-CA-T-TT-CCCGCCCTCAGTT--TGGGG
Alignments
lowQualScore : 2 33 5 2 2 55 2 2 2 33
lowQualScore : . .. . . . .. . . . ..
lowQualScore : 5 44 0 5 5 22 5 5 5 99
consensus : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
Reference ( family-847 ) : AATG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA-TCA-T-TT-CCCGCCCTCAGTT--TGGGG
gi|18954 : AATG-ATT--AGTGCAG-TAAGATAGAGGG-CTCCCAGGAC-TA--CA-TCTT-CCCACCCTCAGTT--TGGGG
gi|18955 : AATG-AGT--AATGCAGGTAAGATAGAGGGATTCCCAGGAC-TA-TCA-T-TT-CCCACC--TAGTT--TGGG
gi|18956 : AATG-AGT--A-TGCAGGTGAGATAGAAGG-CTCCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18957 : AATG-AGT--A-TGCAGGAGAGATAGAAGG-CCGCCAGGAC-TA-TCA-T-TT-CCCACTCTCAGTT--TGGGG
gi|18958 : AATG-AGT--A-TGCAGGTGAGATAAGAGG-CTCCCAGGAC-TACTCA-T-TTCCCCGCCCT-AGTT--TGGGG
gi|18959 : AAAG-AGT--A--GCAGCTGAGATAGAGGG-CTTCCAG-AC-TA-TCA-T-TT-CCCGCCCT-AGTT--GGG
gi|18960 : AATG-AGT--A-TGCAGACAAGATAGAGGG-CTCCCAGAAC-TA-TCA-T-AT-TCCGCCCTCAGTT--TGGGG
gi|18961 : AATA-AGT--A-TGTCGGTAAGATAGGAGG-CTCCCAGGAC-TA-CCA-T-TT-CCCGGCCTCAGTT--AAGGG
gi|18962 : AATG-AGT--A-TGCAGGTAAGATAAGAAG-CCCCTAGGAC-TA-TCA-T-TT-TCCACCCT
gi|18963 : AATGGAGTCAA-TGCAGGTAAGATAGAGGG-TTCCCAGGAC-TA-TCA-T-TT-
gi|18964 : AATT-AGT--A-TGCATACAAGATATAGGA-CACCAAGGAC-TA-ACA-T-TT-ACCGCCCTCAGAT--TGGGGt
gi|18965 : AATG-AAT--A-TGCAGATAAGATAGAAGA-A-CCTA-GACGTA-TCA-T-TT--CTGTCCTCAGTT--TGGG
gi|18966 : AATG-ATT--A-TGCAGGCAGGAAAGGGAA-TCCCTGGGAC-TA-TGA-T-TT-CTTGCCCTCAGTT--TGGAG
gi|18967 : ATG--GT--A-TGCAGGTAAGATAAGAGG-CTCCCA-GAC-TA--AA-T-TT-CCCA-CCTCAGTT--GGGG
gi|18968 : ATA-AGT--A-TGCATGTAAGATAGGGGA-CCCCAGGGAC-TA-TTA-T-TT-TCCGTGTTTAGTT--TGGGG
gi|18969 : TG-AGT--A-TGCAGGTAAGATAGAGGG-CTCCCAGGAC-TA--CATT-TT-CCCACACTCAGTTTATGGGG