lowQualScore : 1111 11 111111 111 111111
lowQualScore : 3 3 3 33 3 6666 3 3 44 33 3 77 555 6 3 3 3 1 3 999999 6 222 3 77 6666 777 2 2 2 2 2 999 2 5 2 000000 55 2 88888
lowQualScore : . . . .. . .... . . .. .. . .. ... . . . . . . ...... . ... . .. .... ... . . . . . ... . . . ...... .. . .....
lowQualScore : 1 1 1 22 1 3333 1 1 22 55 1 88 444 4 1 1 1 2 1 555555 2 777 1 33 1111 333 7 7 5 5 5 111 5 0 5 666666 99 5 22222
consensus : TATA-CCTCGT-G-CTC-CGG-TA-C--AGAACGGAC-GTG-TT--T--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTCG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAA-TA-GTTTC-T-AG------TG--TTT-ATT----CGGGGGGA
Reference ( gi|89844 ) : TATA-CCTCGT-G-CTC-TGG-TA-G--AGAACGGAC-GTG-TT--T--C-TGTC-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAA-TA-GTTTC-T-AG------TG--TTT-ATT----TGGGGGGA
gi|89845 : TATA-CCTCGT-G-CTC-TGG-TA-G--AGAACGGAC-GTG-TT--T--C-TGTC-TCTGGG---GAATATAATA-TAATT-TTGGG-TGTTTT-T---C--T-TATT-A-T--AT----ACTTGT--TT-TT-TAGACAAGAAAGGACT-TGT-CA-CGAA-TA-GTTTC-T-AG------TG--TTC-CTT----TGGGGGG
gi|89849 : TATA-CCTCGTCG-CTT-CTG-TA-G--G--ACGGACCGTG-TT--T--C-TGTC-TCTGAG---GAATAGTATA-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAA-TA-GTTTC-T-AG------TG--TT---GT----TGGGG
gi|89846 : TATA-CCTCGT-G-CTG-TGGATA-C--AGTACGGAC-GTT-TT--TT-C-TGTA-TCTGGG---GAATGTTATG-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACC-TGT-CT------TA-GTTTC-T-AG------CG--TTT-ATT----TGGGGGGA
gi|89850 : TATA-GCTCGT-G-CTC-TGG-TA-C--AGAACGGAC-GTG-TT--TT-C-TGTA-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-TG--T--T-TA---G-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG---A-GTTTCTT-AG------TT--GTT-ATT----CGGGGGGA
gi|89851 : TATA-CCTCAT-G-CTC-TGG-TA-C--AGAATGGAC-GTG-TT--TT-C-TGTA-TCTGGG---GAATGTGATG-TAATT-TTGGG-TGCTTT-TG--T--T-TA---A-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG---A-GTTTCTT-GG------TG--TTT-ATT----CGGGGGGA
gi|89853 : TATA-CCTCGT-G-CTG-CGA-TA-C--AGAACGGTC-GTG-TT--T--C-TG-C-TCTGGG---G-ATATAATA-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAAGACT-TGT-CT-T--A-TA-GTTCC-T-AG------TG--TTT-ATT------GGGGGA
gi|89847 : TATA-CCTCGT-G-CTG-CGA-TA-C--AGAAACGAC-GTG-TT--T--C-TGTA-TCTGGG---GAATATT-TA-TAATT-TTGGG-TGGTTT-TATTC--T-TT---A-TTAAT----ACTTG---CA-TT-TAGACAAGAAAGGACT-TGT-CA-CAAA-TA-GTTTC-T-AG------TG--TTC-ATT----CGGGGGGA
gi|89854 : TATAACCTCGT-G-CTC-TGT-CG-C--AGAACGGAC-GTGTTT--T--C-TGTA-TCT-GG---TAATCCGATG-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--TA----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGTCCT-TAAA-TAGGTTTC-T-AGAACCACTGA-TTT-ATT----AGGCGGGA
gi|89848 : TATA-CCTCGT-G-CTG-CGA-TA-GC-AGAACAGAC-GTG-TT-----C-TGTA-TCTGGG-----ATATTTTAATAATT-TTGGG-TGGTTT-TTC-C--T-TAT--A-TT-AT----ACTTG---CCATT-TAGACAAGAAAGGACT-TGT-CA-CAAA-TA--TTTC-TAAG------TG--TTTCATT----CGGGGGAA
gi|89852 : TATA-CCTCGT-G-CTC-TGG-TT-ACCAGAACGGAC-GTG-TTTAT--CGTGTTATCTGGG---GAATGTGATG-TAATTCTTGGGTTGCTTTCT---G--T-TA---ATT--ATTATCACTCGAAATT-TT-TATACAAGGAAGGACTCCGT-CT-TAGGTTA---TTC-T-GGAA----TGCCTTT-ATT----CGGGAGG
gi|89855 : ATA-CCTCGT-G-CTC-TGA-TA-G--AGAACGGAC-GTG-TT--T--C-TGTC-TCTGGG---GAATATAGAA-TAATT-TTGGG-TGTGTT-T---C--T-TATATA-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CCACGAA-TA-GTTTC-T-AG------TG--TTT-ATT----TGGGGGGA
gi|89856 : TA-CCTCGT-G-CTTGCGA-TA-C--AGAACGGTC-GTG-TT--T--C-TG-C-TCTGGG---GA-TATAA-A-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TTCTAGACAAGAAAAGACT-TGT-CT-TA---TA-GTTCC-T-AG------TG--TTT-ATT----CGGGGGG
gi|89857 : A-CCTCGT-GGCTC-TGG-TACA--AGAACGGAC-ATG-TT--TTCC-TGTA-CCTAGGAACGAATGTGATG-TAATT-TTGGG-TGCTTT-T---TGTT-TA---A-T--AT----ACTCG---TT-TT-TATCAAAGGAGGAACC-TGT-CT-TAG---A-GTTCT-T-AG------TG--AAT-ATTATCGTGGGG
gi|89858 : T----ACTTG---TT-TT--AGACAAGAAAGGACT-CGT-CA-CAAA-TA-ATATC-A-AG------TG--TTT-ATT----TGGGGGGA
gi|89859 : G---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TATA-TA-GTTTC-T-AG------TG--TTT-ATT----TGGGGGGA
gi|89860 : GACT-TGT-CT-TAAA-TA-GTTTC-T-AG------TG--TTT-ATT----AGGGGGGA
Alignments
lowQualScore : 11 111111 111 111111
lowQualScore : 2 2 2 33 2 2 444 2 2 2 66 2 33 555 1 2 2 2 0 2 777777 5 111 2 66 5555 1 666 2 2 2 2 2 55 2 2 4 2 000000 55 2 33 3
lowQualScore : . . . .. . . ... . . . .. . .. ... . . . . . . ...... . ... . .. .... . ... . . . . . .. . . . . ...... .. . .. .
lowQualScore : 9 9 9 11 9 9 666 9 9 9 44 9 99 000 0 9 9 9 4 9 444444 7 888 9 88 7777 7 999 5 5 4 4 4 11 4 4 7 4 000000 66 4 22 0
consensus : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
Reference ( family-845 ) : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTCG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
gi|89844 : TATA-CCTCGT-G-CTC-TGG-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89845 : TATA-CCTCGT-G-CTC-TGG-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATAATA-TAATT-TTGGG-TGTTTT-T---C--T-TATT-A-T--AT----ACTTGT--TT-TT-TAGACAAGAAAGGACT-TGT-CA-CGAATA-GT-TTC-T-AG------TG--TTC-CT--TTGGGGGG
gi|89846 : TATA-CCTCGT-G-CTG-TGGAT-A-C-A-GTACGGAC-GTT-TTTT-C-TGTA-TCTGGG---GAATGTTATG-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACC-TGT-CT-----TA-GT-TTC-T-AG------CG--TTT-AT--TTGGGGGGA
gi|89847 : TATA-CCTCGT-G-CTG-CGA-T-A-C-A-GAAACGAC-GTG-TTT--C-TGTA-TCTGGG---GAATATT-TA-TAATT-TTGGG-TGGTTT-TATTC--T-TT---A-TTAAT----ACTTG---CA-TT-TAGACAAGAAAGGACT-TGT-CA-CAAATA-GT-TTC-T-AG------TG--TTC-AT--TCGGGGGGA
gi|89848 : TATA-CCTCGT-G-CTG-CGA-T-AGC-A-GAACAGAC-GTG-TT---C-TGTA-TCTGGG-----ATATTTTAATAATT-TTGGG-TGGTTT-TTC-C--T-TAT--A-TT-AT----ACTTG---CCATT-TAGACAAGAAAGGACT-TGT-CA-CAAATA--T-TTC-TAAG------TG--TTTCAT--TCGGGGGAA
gi|89849 : TATA-CCTCGTCG-CTT-CTG-T-A-----GGACGGACCGTG-TTT--C-TGTC-TCTGAG---GAATAGTATA-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG---TT-GT--TGGGG
gi|89850 : TATA-GCTCGT-G-CTC-TGG-T-A-C-A-GAACGGAC-GTG-TTTT-C-TGTA-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-TG--T--T-TA---G-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG--A-GT-TTCTT-AG------TT--GTT-AT--TCGGGGGGA
gi|89851 : TATA-CCTCAT-G-CTC-TGG-T-A-C-A-GAATGGAC-GTG-TTTT-C-TGTA-TCTGGG---GAATGTGATG-TAATT-TTGGG-TGCTTT-TG--T--T-TA---A-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG--A-GT-TTCTT-GG------TG--TTT-AT--TCGGGGGGA
gi|89852 : TATA-CCTCGT-G-CTC-TGG-TTA-CCA-GAACGGAC-GTG-TTTATCGTGTTATCTGGG---GAATGTGATG-TAATTCTTGGGTTGCTTTCT---G--T-TA---ATT--ATTATCACTCGAAATT-TT-TATACAAGGAAGGACTCCGT-CT-TAGGT---TATTC-T-GGAA----TGCCTTT-AT--TCGGGAGG
gi|89853 : TATA-CCTCGT-G-CTG-CGA-T-A-C-A-GAACGGTC-GTG-TTT--C-TG-C-TCTGGG---G-ATATAATA-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAAGACT-TGT-CT-T--ATA-GT-TCC-T-AG------TG--TTT-AT--T--GGGGGA
gi|89854 : TATAACCTCGT-G-CTC-TGT-C-G-C-A-GAACGGAC-GTGTTTT--C-TGTA-TCT-GG---TAATCCGATG-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--TA----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGTCCT-TAAATAGGT-TTC-T-AGAACCACTGA-TTT-AT--TAGGCGGGA
gi|89855 : ATA-CCTCGT-G-CTC-TGA-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATAGAA-TAATT-TTGGG-TGTGTT-T---C--T-TATATA-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CCACGAATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89856 : TA-CCTCGT-G-CTTGCGA-T-A-C-A-GAACGGTC-GTG-TTT--C-TG-C-TCTGGG---GA-TATAA-A-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TTCTAGACAAGAAAAGACT-TGT-CT-TA--TA-GT-TCC-T-AG------TG--TTT-AT--TCGGGGGG
gi|89857 : A-CCTCGT-GGCTC-TGG-T-A-C-AAGAACGGAC-ATG-TTTTCC-TGTA-CCTAGGAACGAATGTGATG-TAATT-TTGGG-TGCTTT-T---TGTT-TA---A-T--AT----ACTCG---TT-TT-TATCAAAGGAGGAACC-TGT-CT-TAG--A-GT-TCT-T-AG------TG--AAT-ATTATCGTGGGG
gi|89858 : T----ACTTG---TT-TT--AGACAAGAAAGGACT-CGT-CA-CAAATA-AT-ATC-A-AG------TG--TTT-AT--TTGGGGGGA
gi|89859 : G---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TATATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89860 : GACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TAGGGGGGA
Alignments
lowQualScore : 11 111111 111 111111
lowQualScore : 2 2 2 33 2 2 444 2 2 2 66 2 33 555 1 2 2 2 0 2 777777 5 111 2 66 5555 666 2 2 2 2 2 55 2 2 4 2 000000 55 2 33 3
lowQualScore : . . . .. . . ... . . . .. . .. ... . . . . . . ...... . ... . .. .... ... . . . . . .. . . . . ...... .. . .. .
lowQualScore : 9 9 9 11 9 9 666 9 9 9 44 9 99 000 0 9 9 9 4 9 444444 7 888 9 88 7777 999 5 5 4 4 4 11 4 4 7 4 000000 66 4 22 0
consensus : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
Reference ( family-845 ) : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
gi|89844 : TATA-CCTCGT-G-CTC-TGG-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89845 : TATA-CCTCGT-G-CTC-TGG-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATAATA-TAATT-TTGGG-TGTTTT-T---C--T-TATT-A-T--AT----ACTTGT--TT-TT-TAGACAAGAAAGGACT-TGT-CA-CGAATA-GT-TTC-T-AG------TG--TTC-CT--TTGGGGGG
gi|89846 : TATA-CCTCGT-G-CTG-TGGAT-A-C-A-GTACGGAC-GTT-TTTT-C-TGTA-TCTGGG---GAATGTTATG-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACC-TGT-CT-----TA-GT-TTC-T-AG------CG--TTT-AT--TTGGGGGGA
gi|89847 : TATA-CCTCGT-G-CTG-CGA-T-A-C-A-GAAACGAC-GTG-TTT--C-TGTA-TCTGGG---GAATATT-TA-TAATT-TTGGG-TGGTTT-TATTC--T-TT---A-TTAAT----ACTTG---CA-TT-TAGACAAGAAAGGACT-TGT-CA-CAAATA-GT-TTC-T-AG------TG--TTC-AT--TCGGGGGGA
gi|89848 : TATA-CCTCGT-G-CTG-CGA-T-AGC-A-GAACAGAC-GTG-TT---C-TGTA-TCTGGG-----ATATTTTAATAATT-TTGGG-TGGTTT-TTC-C--T-TAT--A-TT-AT----ACTTG---CCATT-TAGACAAGAAAGGACT-TGT-CA-CAAATA--T-TTC-TAAG------TG--TTTCAT--TCGGGGGAA
gi|89849 : TATA-CCTCGTCG-CTT-CTG-T-A-----GGACGGACCGTG-TTT--C-TGTC-TCTGAG---GAATAGTATA-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG---TT-GT--TGGGG
gi|89850 : TATA-GCTCGT-G-CTC-TGG-T-A-C-A-GAACGGAC-GTG-TTTT-C-TGTA-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-TG--T--T-TA---G-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG--A-GT-TTCTT-AG------TT--GTT-AT--TCGGGGGGA
gi|89851 : TATA-CCTCAT-G-CTC-TGG-T-A-C-A-GAATGGAC-GTG-TTTT-C-TGTA-TCTGGG---GAATGTGATG-TAATT-TTGGG-TGCTTT-TG--T--T-TA---A-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG--A-GT-TTCTT-GG------TG--TTT-AT--TCGGGGGGA
gi|89852 : TATA-CCTCGT-G-CTC-TGG-TTA-CCA-GAACGGAC-GTG-TTTATCGTGTTATCTGGG---GAATGTGATG-TAATTCTTGGGTTGCTTTCT---G--T-TA---ATT--ATTATCACTCGAAATT-TT-TATACAAGGAAGGACTCCGT-CT-TAGGT---TATTC-T-GGAA----TGCCTTT-AT--TCGGGAGG
gi|89853 : TATA-CCTCGT-G-CTG-CGA-T-A-C-A-GAACGGTC-GTG-TTT--C-TG-C-TCTGGG---G-ATATAATA-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAAGACT-TGT-CT-T--ATA-GT-TCC-T-AG------TG--TTT-AT--T--GGGGGA
gi|89854 : TATAACCTCGT-G-CTC-TGT-C-G-C-A-GAACGGAC-GTGTTTT--C-TGTA-TCT-GG---TAATCCGATG-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--TA----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGTCCT-TAAATAGGT-TTC-T-AGAACCACTGA-TTT-AT--TAGGCGGGA
gi|89855 : ATA-CCTCGT-G-CTC-TGA-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATAGAA-TAATT-TTGGG-TGTGTT-T---C--T-TATATA-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CCACGAATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89856 : TA-CCTCGT-G-CTTGCGA-T-A-C-A-GAACGGTC-GTG-TTT--C-TG-C-TCTGGG---GA-TATAA-A-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TTCTAGACAAGAAAAGACT-TGT-CT-TA--TA-GT-TCC-T-AG------TG--TTT-AT--TCGGGGGG
gi|89857 : A-CCTCGT-GGCTC-TGG-T-A-C-AAGAACGGAC-ATG-TTTTCC-TGTA-CCTAGGAACGAATGTGATG-TAATT-TTGGG-TGCTTT-T---TGTT-TA---A-T--AT----ACTCG---TT-TT-TATCAAAGGAGGAACC-TGT-CT-TAG--A-GT-TCT-T-AG------TG--AAT-ATTATCGTGGGG
gi|89858 : T----ACTTG---TT-TT--AGACAAGAAAGGACT-CGT-CA-CAAATA-AT-ATC-A-AG------TG--TTT-AT--TTGGGGGGA
gi|89859 : G---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TATATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89860 : GACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TAGGGGGGA
blockSeqs : A C G GC A T GC A C T AT G TA AAC A A C T C ATTC A TAT T TA TATC AAA A C C C A AA G A T A AACCAC CC C TA T
blockSeqs : . . . T . . CC . . . TC . C . T . . . . TCC A TT . T . T . . . . . AA . . T . AA A . . T
blockSeqs : . . . T . . G . . . T . A . T . . . . TGT . T . . . . . . . . . AA . . . . . . . . C
blockSeqs : . . . C . . C . . . T . A . T . . . . GT . . . . . . . . . . . AA . . . . . . . . C
blockSeqs : . . . C . . C . . . T . A . T . . . . GT . . . . . . . . . . . GG . . . . . . . . G
blockSeqs : . . . C . . C . . . . . C . T . . . . C . . . . . . . . . . . AA . . . . . . . . C
blockSeqs : . . . T . . C . . . . . A . G . . . . C . . . . . . . . . . . AA . . . . . . . . C
blockSeqs : . . . T . . C . . . . . A . G . . . . C . . . . . . . . . . . AA . . . . . . . . C
blockSeqs : . . . T . . C . . . . . C . A . . . . G . . . . . . . . . . . TA . . . . . . . . A
blockSeqs : . . . C . . G . . . . . A . G . . . . G . . . . . . . . . . . AA . . . . . . . . T
blockSeqs : . . . T . . C . . . . . C . A . . . . C . . . . . . . . . . . G . . . . . . . . C
blockSeqs : . . . T . . C . . . . . C . A . . . . C . . . . . . . . . . . G . . . . . . . . C
blockSeqs : . . . T . . . . . . . . A . G . . . . G . . . . . . . . . . . A . . . . . . . . T
blockSeqs : . . . . . . . G . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . .
blockSeqCons :
originalCons : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
finalCons : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
Alignments
lowQualScore : 11 111111 111 111111
lowQualScore : 2 2 2 33 2 2 444 2 2 2 66 2 33 555 1 2 2 2 0 2 777777 5 111 2 66 5555 666 2 2 2 2 2 55 2 2 4 2 000000 55 2 33 3
lowQualScore : . . . .. . . ... . . . .. . .. ... . . . . . . ...... . ... . .. .... ... . . . . . .. . . . . ...... .. . .. .
lowQualScore : 9 9 9 11 9 9 666 9 9 9 44 9 99 000 0 9 9 9 4 9 444444 7 888 9 88 7777 999 5 5 4 4 4 11 4 4 7 4 000000 66 4 22 0
consensus : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
Reference ( family-845 ) : TATA-CCTCGT-G-CTC-CGG-T-A-C-A-GAACGGAC-GTG-TTT--C-TGTN-TCTGGG---GAATATNATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TCGGGGGGA
gi|89844 : TATA-CCTCGT-G-CTC-TGG-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89845 : TATA-CCTCGT-G-CTC-TGG-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATAATA-TAATT-TTGGG-TGTTTT-T---C--T-TATT-A-T--AT----ACTTGT--TT-TT-TAGACAAGAAAGGACT-TGT-CA-CGAATA-GT-TTC-T-AG------TG--TTC-CT--TTGGGGGG
gi|89846 : TATA-CCTCGT-G-CTG-TGGAT-A-C-A-GTACGGAC-GTT-TTTT-C-TGTA-TCTGGG---GAATGTTATG-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACC-TGT-CT-----TA-GT-TTC-T-AG------CG--TTT-AT--TTGGGGGGA
gi|89847 : TATA-CCTCGT-G-CTG-CGA-T-A-C-A-GAAACGAC-GTG-TTT--C-TGTA-TCTGGG---GAATATT-TA-TAATT-TTGGG-TGGTTT-TATTC--T-TT---A-TTAAT----ACTTG---CA-TT-TAGACAAGAAAGGACT-TGT-CA-CAAATA-GT-TTC-T-AG------TG--TTC-AT--TCGGGGGGA
gi|89848 : TATA-CCTCGT-G-CTG-CGA-T-AGC-A-GAACAGAC-GTG-TT---C-TGTA-TCTGGG-----ATATTTTAATAATT-TTGGG-TGGTTT-TTC-C--T-TAT--A-TT-AT----ACTTG---CCATT-TAGACAAGAAAGGACT-TGT-CA-CAAATA--T-TTC-TAAG------TG--TTTCAT--TCGGGGGAA
gi|89849 : TATA-CCTCGTCG-CTT-CTG-T-A-----GGACGGACCGTG-TTT--C-TGTC-TCTGAG---GAATAGTATA-TAATT-TTGGG-TGTTTT-T---C--T-TA---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG---TT-GT--TGGGG
gi|89850 : TATA-GCTCGT-G-CTC-TGG-T-A-C-A-GAACGGAC-GTG-TTTT-C-TGTA-TCTGGG---GAATATTATA-TAATT-TTGGG-TGCTTT-TG--T--T-TA---G-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG--A-GT-TTCTT-AG------TT--GTT-AT--TCGGGGGGA
gi|89851 : TATA-CCTCAT-G-CTC-TGG-T-A-C-A-GAATGGAC-GTG-TTTT-C-TGTA-TCTGGG---GAATGTGATG-TAATT-TTGGG-TGCTTT-TG--T--T-TA---A-T--AT----ACTCG---TT-TT-TATACAAGGAAGGACT-TGT-CT-TAG--A-GT-TTCTT-GG------TG--TTT-AT--TCGGGGGGA
gi|89852 : TATA-CCTCGT-G-CTC-TGG-TTA-CCA-GAACGGAC-GTG-TTTATCGTGTTATCTGGG---GAATGTGATG-TAATTCTTGGGTTGCTTTCT---G--T-TA---ATT--ATTATCACTCGAAATT-TT-TATACAAGGAAGGACTCCGT-CT-TAGGT---TATTC-T-GGAA----TGCCTTT-AT--TCGGGAGG
gi|89853 : TATA-CCTCGT-G-CTG-CGA-T-A-C-A-GAACGGTC-GTG-TTT--C-TG-C-TCTGGG---G-ATATAATA-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TT-TAGACAAGAAAAGACT-TGT-CT-T--ATA-GT-TCC-T-AG------TG--TTT-AT--T--GGGGGA
gi|89854 : TATAACCTCGT-G-CTC-TGT-C-G-C-A-GAACGGAC-GTGTTTT--C-TGTA-TCT-GG---TAATCCGATG-TAATT-TTGGG-TGCTTT-T---C--T-TA---A-T--TA----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGTCCT-TAAATAGGT-TTC-T-AGAACCACTGA-TTT-AT--TAGGCGGGA
gi|89855 : ATA-CCTCGT-G-CTC-TGA-T-A-G-A-GAACGGAC-GTG-TTT--C-TGTC-TCTGGG---GAATATAGAA-TAATT-TTGGG-TGTGTT-T---C--T-TATATA-T--AT----ACTTG---TT-TT-TAGACAAGAAAGGACT-TGT-CCACGAATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89856 : TA-CCTCGT-G-CTTGCGA-T-A-C-A-GAACGGTC-GTG-TTT--C-TG-C-TCTGGG---GA-TATAA-A-TAATT-TTGGG-TGTTTT-T---G--TATT---A-T--AT----ACTTG---TT-TTCTAGACAAGAAAAGACT-TGT-CT-TA--TA-GT-TCC-T-AG------TG--TTT-AT--TCGGGGGG
gi|89857 : A-CCTCGT-GGCTC-TGG-T-A-C-AAGAACGGAC-ATG-TTTTCC-TGTA-CCTAGGAACGAATGTGATG-TAATT-TTGGG-TGCTTT-T---TGTT-TA---A-T--AT----ACTCG---TT-TT-TATCAAAGGAGGAACC-TGT-CT-TAG--A-GT-TCT-T-AG------TG--AAT-ATTATCGTGGGG
gi|89858 : T----ACTTG---TT-TT--AGACAAGAAAGGACT-CGT-CA-CAAATA-AT-ATC-A-AG------TG--TTT-AT--TTGGGGGGA
gi|89859 : G---TT-TT-TAGACAAGAAAGGACT-TGT-CT-TATATA-GT-TTC-T-AG------TG--TTT-AT--TTGGGGGGA
gi|89860 : GACT-TGT-CT-TAAATA-GT-TTC-T-AG------TG--TTT-AT--TAGGGGGGA