lowQualScore : 11 1 22222 2222 11 111 111111 1111111111111 111111 22222222
lowQualScore : 88 44 99 6 3 5 3 2 2 2 8 00000 2 33 444 777777 777777 2 2 2 8888 2 2 2 33 2 2 333 33 2 2 66 5 33 33 33 444 999 44444 111111 444 5555 2 2 2 7777777777777 333333 33 5 2 2 00000000 33 2 2 5
lowQualScore : .. .. .. . . . . . . . . ..... . .. ... ...... ...... . . . .... . . . .. . . ... .. . . .. . .. .. .. ... ... ..... ...... ... .... . . . ............. ...... .. . . . ........ .. . . .
lowQualScore : 55 22 66 2 1 0 1 0 9 7 0 00000 8 77 999 777777 777777 7 7 7 8888 9 9 9 44 7 7 999 77 7 7 33 3 77 77 77 777 444 99999 888888 777 7777 7 7 7 1111111111111 000000 77 3 9 9 77777777 99 9 9 7
consensus : TGATGTTATT--TT--GGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAG-TTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAA-AT--GAG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-C-CAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
Reference ( gi|81374 ) : TGATGTTATT--TT--GG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-G-TTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAA-AT--TAG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-T-CAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81375 : TGATGTTATT--TCTGGG--AGTTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-G-TTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAA-AT--TAG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-T-CAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81376 : TGATGTTATT--TT--GGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-A---GTTA-ATTGATT-CAA-GCGGAA-TTTT-AAA-GT--GAG--TT-C-CAAG--T-A--GAAAA--TAT--TA---GTACCTTTT-C-CAAAG---A-T-------A---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81377 : TGATGTTATTATTT--GG--AATTTAG-AATCTGAACTGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-A---GTTA-ATTGATT-CAA-GCGGAA-TTTT-AAA-GT--GAG--TT-C-CAAG--T-A---AAAA--T----TA---GTACCTTTT-C-CAAAG---A-T-------A---AA----AG-AG-AACACAACTA-G-T-A---------TT------TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81378 : TGATGTTATT--TT--GGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-AAGAG-TTGTTA-A--GATTCCAA-GCGGAATTTTT-AAA-GT--GAG--TT-T-CGAG--T-ATTAAAAT--TAT--TA---GTACCTTTTCC-CAAAG---A-T-----AA----------------AACACAACTA-G-T-AT--T-----TT------TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACATTT
gi|81379 : TGGTATTATT--TT--GGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-ATT-----GTGTTCAGCAGAA--AT--T------AAACTGTTATA------A-TGAAATAT-ATGATG-AAGAA-ATGTTA-ATTGATT-CAA-ACAG-A-GTTT-TAA-AT--GAG--TT-C-CAAG--T-A--GAAAA--TACTATA---GTACTTTTT-C-CAAAG---A-T-----AAA---AA----AG-AG-AACACTACTA-G---A---C-----CT------TT--GT-
gi|81380 : ATGTTATT--TT--GG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTG-TATA------G-TGAAATAT-C-GATG-AGA-A-GTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAA-AT--TAG--TTCC-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-T-CAAAG---A-T------AA---AA----AG-AG-AACACAACTA-GAT-A---T-----TTA-----TT--GTAGACA--C-T--------GTTT--C-T-GAT-ACATTT
gi|81381 : ATGCTATT--TT--GG--A-TTTAG-AATCTGAGATG-AATTC-AGATAC-ATT-----GTGTTCAACTGAA--AA--T------AAACTTGTATA------G-TG-AATAT-CTGATG-AAGAG-TTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAA-AT--GAG--TT-C-CAAG--T-A--GAAAT--TAC--TG---GTAGCTTTT-TCCAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81382 : ATGCTATT--TT--GG--G-ATTAG-AATCTGAGATGAA-TTC-AGATACCA-T------TGTTCAACTGGA--AAATT------AAACTGTTATT------G-TGAAATATATTGATGGAAGAG-TTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAA-AT----G--TT-C-CAAGG-T-A--GAAAAAGTAC--TG---GTAGCTTTT-T-CCAAG---A-T-----AAA---AA----AG-AGAAACACAACTA-G---A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81383 : ATGTTATT--GT--GGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-C-TT----GTGTTCAGCTGAA--AA--T------AAAATGTTAAA------G-TGAAATAT--TGATG-AAGAG-TTG-TA-ATTGATT-CAA-GCGGAA-TTTT-AAA-GT--GAG--TT-C-CAAG--TAA--GAAAA--AAT--T----GTACCTTTT-C-CAAAG------------AA---AA----AG-AG-AACACAACTA-G---A---T-----TT------TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACATTT
gi|81384 : ATATTATT--TT--GGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-A-TC----ATGTTCAGC---A--TT--T------AAACTATTATA------G-TAACATAT-CTTATG-AAG-AATTATTG-ATTGATT-CAA-ACAGAG-TTTT-AAA--T--GAG--CT-C-TAAG--T-A--GAAAG--TAC--CA---AAACCTTTTCC-CAAAG---ACT-----TAA---AA----AG-AG-AATACAACTACA-T-A---------------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC-TTT
gi|81385 : ATGTTATT--TT--GGG-A-TTTAG-AATCTGAGATG-AATTC-AAATAC-ATT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAG-C--------G-G------A-ATT------------------TT-AAA-GT--GAG--TT-C-AAAG--T-A--GAAAA--TAT--TA---GTACCTTTT-C-CAA
gi|81386 : ATTTCATTCATT--GG--A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-A-TT----GTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------G-TGAAATAT-CTGATG-Atgttgtgacacctgtttctgatacattt
gi|81387 : T--TG--GG--A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-A-TACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAG-TGAAATAT-CTGATG-AAG-AATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAA-AG--GAG--TT-C-CATG--T-A--GAAAA------------GTACCTTTT-C-CAAAG---A-T-----AAA---AA----GG-AG-AACACAATTA-G-T-C---T-----TT------TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCTcaga
gi|81388 : TGAGATGAA-TTC-AA-CA--A-T-----GTGTTCAGCGGAATAAA--T------AAACTGTTATA--------TGAAATAT-TTGATA-AAGAG-TTGTTAGATTGATT-CAA-GCGG-A-ATTT-AAACAT--TAG--TT-CGCAAG--TGA--CAGAA--TGC--TA---GTAGATTTT-C-CAAAAAGTA-T-----AAG---AA----AG-AG-AACTAAACTA-G-T-A---------TT------TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACATTT
gi|81389 : TAC-A-TT----GTGTTCAGCAGAA--AT--T------AAACTCTTATA------G-TGAACTAT-CTGATA-ACG-AATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAA-AT--GAG--TC-A-CTAG--T-A--GAAAA--TAC--TA---GCAACTTTT-T-CAAAG---A-TGAAAAAAA---AA----AT-AG-AACACAATTT-G-TCG---TTTTCCTT------TT--GT-GACA-AC-T--------ATTT--C-T-GAT-
gi|81390 : TT-AAA-ATGGTAGATTT-C-AAAGATT-A--GGAAA--GAT--TATAGGCACCTTTTCT-CAAAG---A-T-----AAA---AATAGCAG-GA-AACGAGACTA-A-T-C---T-----TTA-----TTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACACT
gi|81385 : TT-T-TAAAG-----T-----GAGTTCAA----AGTAG-AAAATA-TTA-G-T-ACCTT-----TTCCAATGTT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
Alignments
lowQualScore : 1 22222 111111 11111111111 11111111
lowQualScore : 44 3 44 2 2 4 7 2 2 2 33333 2 33 444 777777 777777 2 2 2 2 2 2 2 2 2 33 33 2 2 55 5 33 33 33 444 2 5 2 444 2 111111 5555 2 2 44444444444 5 33 5 2 2 99999999 33 2 2 5
lowQualScore : .. . .. . . . . . . . ..... . .. ... ...... ...... . . . . . . . . . .. .. . . .. . .. .. .. ... . . . ... . ...... .... . . ........... . .. . . . ........ .. . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 5 88888 1 44 000 222222 222222 5 5 5 5 7 7 7 7 5 44 44 5 5 99 0 44 44 44 444 5 0 5 444 5 111111 3333 5 5 55555555555 0 44 0 7 7 33333333 77 7 7 3
consensus : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
Reference ( family-832 ) : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81374 : TGATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81375 : TGATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81376 : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TT-C-CAAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81377 : TGATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------GT-GAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TT-C-CAAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-------TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81378 : TGATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-A-AGAGTTGTTA-A--GATTCCAA-GCGGAATTTTT-AAAGTG--AG--TT-T-CGAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTTCC-CAAAG---A-T-----AA------------AACACAACTA-G-T-ATT-----TT-TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACATTT
gi|81379 : TGGTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-ATT-----GTGTTCAGCAGAA--AT--T------AAACTGTTATA------AT-GAAATAT-ATGATG-A-AGAAATGTTA-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--TT-C-CAAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---A-C-----CT-TT--GT-
gi|81380 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTG-TATA------GT-GAAATAT-C-GATG-A-GAAG-TGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTCC-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-A-T-----TTATT--GTAGACA--C-T--------GTTT--C-T-GAT-ACATTT
gi|81381 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-A-TT----GTGTTCAACTGAA--AA--T------AAACTTGTATA------GT-GAA-TAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81382 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCA-T------TGTTCAACTGGA--AAATT------AAACTGTTATT------GT-GAAATATATTGATGGA-AGAGTTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAAATG------TT-C-CAAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-CCAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81383 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-C-TT----GTGTTCAGCTGAA--AA--T------AAAATGTTAAA------GT-GAAATAT--TGATG-A-AGAGTTGT-A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TT-C-CAAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-CAAAG------------AAAA----AGAG-AACACAACTA-G---A-T-----TT-TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACATTT
gi|81384 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-A-TC----ATGTTCAGC---A--TT--T------AAACTATTATA------GT-AACATAT-CTTATG-A-AGAATTATTG-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--CT-C-TAAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-CAAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A--------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC-TTT
gi|81385 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-A-A--------------AT----A-GCGGAA-TTTT-AAAGTG--AG--TT-C-AAAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C---------------------------------CAA----------------TG-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81386 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-A-TT----GTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------GT-GAAATAT-CTGATG-ACAGA
gi|81387 : atttcattcatt--T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-A-TACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAGT-GAAATAT-CTGATG-A-AGAATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAAAGG--AG--TT-C-CATG--T-A--GAAA---------A---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-C-T-----TT-TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCT
gi|81388 : TGAGATGAA-TTC-AA-CA--A-T-----GTGTTCAGCGGAATAAA--T------AAACTGTTATA-------T-GAAATAT-TTGATA-A-AGAGTTGTTAGATTGATT-CAA-GCGGAA-TTTA-AACATT--AG--TT-CGCAAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-CAAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A-------TT-TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACATTT
gi|81389 : TAC-A-TT----GTGTTCAGCAGAA--AT--T------AAACTCTTATA------GT-GAACTAT-CTGATA-A-CGAATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAAATG--AG--TC-A-CTAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-CAAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCG-TTTTCCTT-TT--GT-GACA-AC-T--------ATTT--C-T-GAT-
gi|81390 : TT-AAAATGGTAGATTT-C-AAAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTCAAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-C-T-----TTATTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACACT
Alignments
lowQualScore : 1 11111 111111 11111111111 11111111
lowQualScore : 44 3 44 2 2 4 7 2 2 22222 2 33 444 777777 777777 2 2 2 2 2 2 2 2 2 33 33 2 2 55 5 33 33 33 444 2 5 2 444 2 111111 5555 2 2 44444444444 5 33 5 2 2 99999999 33 2 2 5
lowQualScore : .. . .. . . . . . . ..... . .. ... ...... ...... . . . . . . . . . .. .. . . .. . .. .. .. ... . . . ... . ...... .... . . ........... . .. . . . ........ .. . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 66666 1 44 000 222222 222222 5 5 5 5 7 7 7 7 5 44 44 5 5 99 0 44 44 44 444 5 0 5 444 5 111111 3333 5 5 55555555555 0 44 0 7 7 33333333 77 7 7 3
consensus : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
Reference ( family-832 ) : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81374 : TGATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81375 : TGATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81376 : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81377 : TGATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-------TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81378 : TGATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-A-AGAGTTGTTA-A--GATTCCAA-GCGGAATTTTT-AAAGTG--AG--TTT-C-GAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTTCC-CAAAG---A-T-----AA------------AACACAACTA-G-T-ATT-----TT-TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACATTT
gi|81379 : TGGTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-AT----TGTGTTCAGCAGAA--AT--T------AAACTGTTATA------A-TGAAATAT-ATGATG-A-AGAAATGTTA-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--TTC-C-AAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---A-C-----CT-TT--GT-
gi|81380 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGT-ATA------G-TGAAATAT-C-GATG-A-GAAGT-GTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-CCAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-A-T-----TTATT--GTAGACA--C-T--------GTTT--C-T-GAT-ACATTT
gi|81381 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-AT----TGTGTTCAACTGAA--AA--T------AAACTTGTATA------G-TGAA-TAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81382 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCAT----TGT--TCAACTGGA--AAATT------AAACTGTTATT------G-TGAAATATATTGATGGA-AGAGTTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAAATG------TTC-C-AAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-CCAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81383 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-CT----TGTGTTCAGCTGAA--AA--T------AAAATGTTAAA------G-TGAAATAT--TGATG-A-AGAGTTGT-A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-CAAAG------------AAAA----AGAG-AACACAACTA-G---A-T-----TT-TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACATTT
gi|81384 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-AT----CATGTTCAGC---A--TT--T------AAACTATTATA------G-TAACATAT-CTTATG-A-AGAATTATTG-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--CTC-T-AAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-CAAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A--------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC-TTT
gi|81385 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-A-A--------------AT----A-GCGGAA-TTTT-AAAGTG--AG--TTC-A-AAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C---------------------------------CAA----------------TG-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81386 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-AT----TGTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------G-TGAAATAT-CTGATG-ACAGA
gi|81387 : atttcattcatt--T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-ATACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAG-TGAAATAT-CTGATG-A-AGAATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAAAGG--AG--TTC-C-ATG--T-A--GAAA---------A---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-C-T-----TT-TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCT
gi|81388 : TGAGATGAA-TTC-AA---C-AA----TGTGTTCAGCGGAATAAA--T------AAACTGTTATA--------TGAAATAT-TTGATA-A-AGAGTTGTTAGATTGATT-CAA-GCGGAA-TTTA-AACATT--AG--TTCGC-AAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-CAAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A-------TT-TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACATTT
gi|81389 : TAC-AT----TGTGTTCAGCAGAA--AT--T------AAACTCTTATA------G-TGAACTAT-CTGATA-A-CGAATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAAATG--AG--TCA-C-TAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-CAAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCG-TTTTCCTT-TT--GT-GACA-AC-T--------ATTT--C-T-GAT-
gi|81390 : TT-AAAATGGTAGATTTC-A-AAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTCAAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-C-T-----TTATTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACACT
Alignments
lowQualScore : 1 11111 111111 11111111111 11111111
lowQualScore : 44 3 44 2 2 4 7 2 2 22222 2 33 444 777777 777777 2 2 2 2 2 2 2 2 2 33 33 2 2 55 5 33 33 33 444 2 5 2 444 2 111111 5555 2 2 44444444444 5 33 5 2 2 99999999 33 2 2 5
lowQualScore : .. . .. . . . . . . ..... . .. ... ...... ...... . . . . . . . . . .. .. . . .. . .. .. .. ... . . . ... . ...... .... . . ........... . .. . . . ........ .. . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 66666 1 44 000 222222 222222 5 5 5 5 7 7 7 7 5 44 44 5 5 99 0 44 44 44 444 5 0 5 444 5 111111 3333 5 5 55555555555 0 44 0 7 7 33333333 77 7 7 3
consensus : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
Reference ( family-832 ) : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81374 : TGATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81375 : TGATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81376 : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81377 : TGATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-------TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81378 : TGATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-A-AGAGTTGTTA-A--GATTCCAA-GCGGAATTTTT-AAAGTG--AG--TTT-C-GAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTTCC-CAAAG---A-T-----AA------------AACACAACTA-G-T-ATT-----TT-TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACATTT
gi|81379 : TGGTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-AT----TGTGTTCAGCAGAA--AT--T------AAACTGTTATA------A-TGAAATAT-ATGATG-A-AGAAATGTTA-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--TTC-C-AAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---A-C-----CT-TT--GT-
gi|81380 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGT-ATA------G-TGAAATAT-C-GATG-A-GAAGT-GTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-CCAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-A-T-----TTATT--GTAGACA--C-T--------GTTT--C-T-GAT-ACATTT
gi|81381 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-AT----TGTGTTCAACTGAA--AA--T------AAACTTGTATA------G-TGAA-TAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81382 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCAT----TGT--TCAACTGGA--AAATT------AAACTGTTATT------G-TGAAATATATTGATGGA-AGAGTTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAAATG------TTC-C-AAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-CCAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81383 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-CT----TGTGTTCAGCTGAA--AA--T------AAAATGTTAAA------G-TGAAATAT--TGATG-A-AGAGTTGT-A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-CAAAG------------AAAA----AGAG-AACACAACTA-G---A-T-----TT-TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACATTT
gi|81384 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-AT----CATGTTCAGC---A--TT--T------AAACTATTATA------G-TAACATAT-CTTATG-A-AGAATTATTG-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--CTC-T-AAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-CAAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A--------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC-TTT
gi|81385 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-A-A--------------AT----A-GCGGAA-TTTT-AAAGTG--AG--TTC-A-AAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C---------------------------------CAA----------------TG-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81386 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-AT----TGTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------G-TGAAATAT-CTGATG-ACAGA
gi|81387 : atttcattcatt--T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-ATACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAG-TGAAATAT-CTGATG-A-AGAATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAAAGG--AG--TTC-C-ATG--T-A--GAAA---------A---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-C-T-----TT-TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCT
gi|81388 : TGAGATGAA-TTC-AA---C-AA----TGTGTTCAGCGGAATAAA--T------AAACTGTTATA--------TGAAATAT-TTGATA-A-AGAGTTGTTAGATTGATT-CAA-GCGGAA-TTTA-AACATT--AG--TTCGC-AAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-CAAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A-------TT-TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACATTT
gi|81389 : TAC-AT----TGTGTTCAGCAGAA--AT--T------AAACTCTTATA------G-TGAACTAT-CTGATA-A-CGAATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAAATG--AG--TCA-C-TAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-CAAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCG-TTTTCCTT-TT--GT-GACA-AC-T--------ATTT--C-T-GAT-
gi|81390 : TT-AAAATGGTAGATTTC-A-AAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTCAAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-C-T-----TTATTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACACT
blockSeqs : AT C GG G G T A G C ACAAT T TA AAT TCATAA CATGTA T A G C G C T T T GT AT G C AT A TT AG TA TAG G C T AGT C GAAAAA TAGC A C TCGTTTTCC A GC G G T GTTTGACA TC T G A
blockSeqs : . . G . . T A . . T T . A . . . . . . . . . . . . . . . G G . . . . . C . . . A . . . TATT A . A . . GTTTGACA . . . A
blockSeqs : . . G . . T A . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . ATAT . . . . . . . . . .
blockSeqs : . . A . . T A . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TAT . . . . . . . . . .
blockSeqs : . . G . . T A . . T A . T . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TAT . . . . . . . . . .
blockSeqs : . . G . . T A . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TAT . . . . . . . . . .
blockSeqs : . . G . . T . . . C T . A . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . TCT . . . . . . . . . .
blockSeqs : . . G . . T . . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TCT . . . . . . . . . .
blockSeqs : . . G . . T . . . T T . T . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TA . . . . . . . . . .
blockSeqs : . . G . . T . . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . AC . . . . . . . . . .
blockSeqs : . . G . . . . . . T A . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AT . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AT . . . . . . . . . .
blockSeqs : . . . . . . . . G . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . . . . . . . . . .
blockSeqs : . . . . . A . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : G* T**** TAT********
originalCons : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
finalCons : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-ATT----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-GTAT--------TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
Alignments
lowQualScore : 1 11111 111111 11111111111 11111111
lowQualScore : 44 3 44 2 2 4 7 2 2 22222 2 33 444 777777 777777 2 2 2 2 2 2 2 2 2 33 33 2 2 55 5 33 33 33 444 2 5 2 444 2 111111 5555 2 2 44444444444 5 33 5 2 2 99999999 33 2 2 5
lowQualScore : .. . .. . . . . . . ..... . .. ... ...... ...... . . . . . . . . . .. .. . . .. . .. .. .. ... . . . ... . ...... .... . . ........... . .. . . . ........ .. . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 66666 1 44 000 222222 222222 5 5 5 5 7 7 7 7 5 44 44 5 5 99 0 44 44 44 444 5 0 5 444 5 111111 3333 5 5 55555555555 0 44 0 7 7 33333333 77 7 7 3
consensus : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
Reference ( family-832 ) : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81374 : TGATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81375 : TGATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81376 : TGATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81377 : TGATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------G-TGAAATAT-CTGATG-A-AGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-------TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACATTT
gi|81378 : TGATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-A-AGAGTTGTTA-A--GATTCCAA-GCGGAATTTTT-AAAGTG--AG--TTT-C-GAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTTCC-CAAAG---A-T-----AA------------AACACAACTA-G-T-ATT-----TT-TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACATTT
gi|81379 : TGGTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-AT----TGTGTTCAGCAGAA--AT--T------AAACTGTTATA------A-TGAAATAT-ATGATG-A-AGAAATGTTA-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--TTC-C-AAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---A-C-----CT-TT--GT-
gi|81380 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGT-ATA------G-TGAAATAT-C-GATG-A-GAAGT-GTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-CCAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-A-T-----TTATT--GTAGACA--C-T--------GTTT--C-T-GAT-ACATTT
gi|81381 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-AT----TGTGTTCAACTGAA--AA--T------AAACTTGTATA------G-TGAA-TAT-CTGATG-A-AGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81382 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCAT----TGT--TCAACTGGA--AAATT------AAACTGTTATT------G-TGAAATATATTGATGGA-AGAGTTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAAATG------TTC-C-AAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-CCAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81383 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-CT----TGTGTTCAGCTGAA--AA--T------AAAATGTTAAA------G-TGAAATAT--TGATG-A-AGAGTTGT-A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-CAAAG------------AAAA----AGAG-AACACAACTA-G---A-T-----TT-TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACATTT
gi|81384 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-AT----CATGTTCAGC---A--TT--T------AAACTATTATA------G-TAACATAT-CTTATG-A-AGAATTATTG-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--CTC-T-AAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-CAAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A--------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC-TTT
gi|81385 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-A-A--------------AT----A-GCGGAA-TTTT-AAAGTG--AG--TTC-A-AAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C---------------------------------CAA----------------TG-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACATTT
gi|81386 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-AT----TGTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------G-TGAAATAT-CTGATG-ACAGA
gi|81387 : atttcattcatt--T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-ATACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAG-TGAAATAT-CTGATG-A-AGAATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAAAGG--AG--TTC-C-ATG--T-A--GAAA---------A---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-C-T-----TT-TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCT
gi|81388 : TGAGATGAA-TTC-AA---C-AA----TGTGTTCAGCGGAATAAA--T------AAACTGTTATA--------TGAAATAT-TTGATA-A-AGAGTTGTTAGATTGATT-CAA-GCGGAA-TTTA-AACATT--AG--TTCGC-AAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-CAAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A-------TT-TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACATTT
gi|81389 : TAC-AT----TGTGTTCAGCAGAA--AT--T------AAACTCTTATA------G-TGAACTAT-CTGATA-A-CGAATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAAATG--AG--TCA-C-TAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-CAAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCG-TTTTCCTT-TT--GT-GACA-AC-T--------ATTT--C-T-GAT-
gi|81390 : TT-AAAATGGTAGATTTC-A-AAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTCAAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-C-T-----TTATTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACACT