lowQualScore : 22222222222222222222
lowQualScore : 66 2 2 2 2 66 77777 2 2 33333333333333333333 2 6666 2 33 44 3
lowQualScore : .. . . . . .. ..... . . .................... . .... . .. .. .
lowQualScore : 55 9 5 5 5 66 66666 5 5 22222222222222222222 9 1111 9 99 88 3
consensus : TACCGCAAA-TCACCCCTGAATTAGAA-CG-C-TTN-GGCC----GAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACACANTT-GAATCTG
Reference ( gi|86517 ) : TACTACAAA-TCACCCCTGAATTAGAA-CG-C-TTG-GGCC----AAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACACAGTT-GAATCTG
gi|86504 : TACCGCAAA-TCACCCCTGAATTAGAA-TG-C-TTG-GGCC----GAT-A-TAGTA--------------------TTGCT-TTGAG----TGA-C--AACACAATT-GAAT
gi|86505 : tTACCGCAAA-TCACCCCTGAATTAGAA-CA-C-TTG-GTCC----GAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-T--GGCATTTTT-GAATCTG
gi|86510 : tTACCACAAA-TCACCCCTGAATTATAA-AG-C-TTT-GGCC----ACT-A-TAGTA--------------------TTGAG-TTGGGTTTATGATC--GACACAGTT-GAATCTG
gi|86503 : tTACCGCAAA-TCACCCCTGAATTAGAA-CA-C-TTT-AGCA----GAT-A-TAGTA--------------------TTGCG-TTGCA----TGA-C--GACACAATT-GAATGTG
gi|86508 : tTACCGCAAA-TCACCCCTGAATTAGAA-CG-C-TTT-GGCA----GAT-A-TAGTA--------------------TTGTG-TTGCG----TGA-C--GATATAATT-GAGT
gi|86507 : tTACCGCAAA-TCACCCCTGAATTAA--------TTGAGGCC----AAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-TTGAACACTGTT-GAATCTG
gi|86513 : tTACCACAAA-TCACACCAGAATTAAAC-CA-T-TTT-GGCC----GAT-A-AAGTACTGTATTGTAAAGTATTCTATTGCG-TTGGG----TGA-C--GACACAATT-GAAT
gi|86512 : tTATCACAAT-TCACCCACGAATTAGAA-CA-C-TTT-GGCC----AAT-A-CAGAA--------------------TTGCA-ATGTG----TGA-C--GATA
gi|86514 : tTACCGCAAACTCACCC-TGA-TTAGAAACGGC-TTT-GGCT----GAT-AATGGTA--------------------TTGCT-TTGAG----TGA-C--GA
gi|86516 : tTACCACAAA-TCACCACTGAATTAGAA-CG-T-TTT-CGCC----GAT-A-Tactatcttgaaatctg
gi|86506 : tACCGCAAA-TCACCCCTGAATTAAAA-CG-C-TCG-GGTG----GAT-A-TAGTA--------------------TTGCG-TTGAG-----GA-C--GACACACTTGGAATGTG
gi|86518 : tcCAAA-TCACCCCTGAATTAGAA-AG-C-TTG-GGCC----GAT-A-TAGTA--------------------TTGCG-TTAGG----TGA-T--GACACTGTC-GAATCTG
gi|86515 : CAAA-TCACCC-TGAATT-GAA-CG-C-TTC-GGCT----GATGA-T-GTT--------------------TGGCGTTTGAG----TGA-C--G-CACTATT-GAAT
gi|86509 : ttacccgCAAA-TCACCCCTGAATTAGAA-TG-CTTTG-GNCCGTTAAAT-A-T
gi|86511 : ttatcgGAA-CG-C-TTG-GGCT----GAT-A-TAATA--------------------TTGCG-TTGGG----TGA-T--GACACTGTT-GAATCTG
gi|86519 : ttaccgcatatcGAA-CG-C-ATT-GGCT----GAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-T--GGCACATTT-GAAT
Alignments
lowQualScore : 22222222222222222222
lowQualScore : 2 2 2 1 2 2 2 00000000000000000000 2 5555 2 33 7777 2 2
lowQualScore : . . . . . . . .................... . .... . .. .... . .
lowQualScore : 7 4 4 0 4 4 4 33333333333333333333 7 7777 7 77 0000 9 9
consensus : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
Reference ( family-830 ) : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
gi|86503 : TACCGCAAA-TCACCCCTGAATTAGAA-CA-CTTTAG-CAGAT-A-TAGTA--------------------TTGCG-TTGCA----TGA-C--GACAC-A-ATT-G-AATGTG
gi|86504 : tTACCGCAAA-TCACCCCTGAATTAGAA-TG-CTTGGG-CCGAT-A-TAGTA--------------------TTGCT-TTGAG----TGA-C--AACAC-A-ATT-G-AAT
gi|86505 : tTACCGCAAA-TCACCCCTGAATTAGAA-CA-CTTGGT-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-T--GGCAT-T-TTT-G-AATCTG
gi|86506 : tACCGCAAA-TCACCCCTGAATTAAAA-CG-CTCGGG-TGGAT-A-TAGTA--------------------TTGCG-TTGAG-----GA-C--GACAC-A-CTTGG-AATGTG
gi|86507 : tcTACCGCAAA-TCACCCCTGAATTA-----A-TTGAGG-CCAAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-TTGAACAC-T-GTT-G-AATCTG
gi|86508 : tTACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTTGG-CAGAT-A-TAGTA--------------------TTGTG-TTGCG----TGA-C--GATAT-A-ATT-G-AGT
gi|86509 : tTATCGCAAA-TCACCCCTGAATTAGAA-TG-CTTTGGNCCGTT-A--AATA--------------------T
gi|86510 : tTACCACAAA-TCACCCCTGAATTATAA-AG-CTTTGG-CCACT-A-TAGTA--------------------TTGAG-TTGGGTTTATGATC--GACAC-A-GTT-G-AATCTG
gi|86511 : tGAA-CG-CTTGGG-CTGAT-A-TAATA--------------------TTGCG-TTGGG----TGA-T--GACAC-T-GTT-G-AATCTG
gi|86512 : ttaccgcatatcTATCACAAT-TCACCCACGAATTAGAA-CA-CTTTGG-CCAAT-A-CAGAA--------------------TTGCA-ATGTG----TGA-C--GATA
gi|86513 : tTACCACAAA-TCACACCAGAATTAAAC-CA-TTTTGG-CCGAT-A-AAGTACTGTATTGTAAAGTATTCTATTGCG-TTGGG----TGA-C--GACAC-A-ATT-G-AAT
gi|86514 : tTACCGCAAACTCACCC-TGA-TTAGAAACGGCTTTGG-CTGAT-AATGGTA--------------------TTGCT-TTGAG----TGA-C--GA-ACTATCTT-GAAATCTG
gi|86515 : tCCGCAAA-TCACCC-TGAATT-GAA-CG-CTTCGG-CTGATGA-T-GTT--------------------TGGCGTTTGAG----TGA-C--G-CAC-T-ATT-G-AAT
gi|86516 : ttacTACCACAAA-TCACCACTGAATTAGAA-CG-TTTTCG-CCGAT-A-T
gi|86517 : tTACTACAAA-TCACCCCTGAATTAGAA-CG-CTTGGG-CCAAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-GTT-G-AATCTG
gi|86518 : CAAA-TCACCCCTGAATTAGAA-AG-CTTGGG-CCGAT-A-TAGTA--------------------TTGCG-TTAGG----TGA-T--GACAC-T-GTC-G-AATCTG
gi|86519 : GAA-CG-CATTGG-CTGAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-T--GGCAC-A-TTT-G-AAT
Alignments
lowQualScore : 22222222222222222222
lowQualScore : 2 2 2 1 2 2 2 00000000000000000000 2 5555 2 33 7777 2 2
lowQualScore : . . . . . . . .................... . .... . .. .... . .
lowQualScore : 7 4 4 0 4 4 4 33333333333333333333 7 7777 7 77 0000 9 9
consensus : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
Reference ( family-830 ) : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
gi|86503 : TACCGCAAA-TCACCCCTGAATTAGAA-CA-CTTTAG-CAGAT-A-TAGTA--------------------TTGCG-TTGCA----TGA-C--GACAC-A-ATT-G-AATGTG
gi|86504 : tTACCGCAAA-TCACCCCTGAATTAGAA-TG-CTTGGG-CCGAT-A-TAGTA--------------------TTGCT-TTGAG----TGA-C--AACAC-A-ATT-G-AAT
gi|86505 : tTACCGCAAA-TCACCCCTGAATTAGAA-CA-CTTGGT-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-T--GGCAT-T-TTT-G-AATCTG
gi|86506 : tACCGCAAA-TCACCCCTGAATTAAAA-CG-CTCGGG-TGGAT-A-TAGTA--------------------TTGCG-TTGAG-----GA-C--GACAC-A-CTTGG-AATGTG
gi|86507 : tcTACCGCAAA-TCACCCCTGAATTA-----A-TTGAGG-CCAAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-TTGAACAC-T-GTT-G-AATCTG
gi|86508 : tTACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTTGG-CAGAT-A-TAGTA--------------------TTGTG-TTGCG----TGA-C--GATAT-A-ATT-G-AGT
gi|86509 : tTATCGCAAA-TCACCCCTGAATTAGAA-TG-CTTTGGNCCGTT-A--AATA--------------------T
gi|86510 : tTACCACAAA-TCACCCCTGAATTATAA-AG-CTTTGG-CCACT-A-TAGTA--------------------TTGAG-TTGGGTTTATGATC--GACAC-A-GTT-G-AATCTG
gi|86511 : tGAA-CG-CTTGGG-CTGAT-A-TAATA--------------------TTGCG-TTGGG----TGA-T--GACAC-T-GTT-G-AATCTG
gi|86512 : ttaccgcatatcTATCACAAT-TCACCCACGAATTAGAA-CA-CTTTGG-CCAAT-A-CAGAA--------------------TTGCA-ATGTG----TGA-C--GATA
gi|86513 : tTACCACAAA-TCACACCAGAATTAAAC-CA-TTTTGG-CCGAT-A-AAGTACTGTATTGTAAAGTATTCTATTGCG-TTGGG----TGA-C--GACAC-A-ATT-G-AAT
gi|86514 : tTACCGCAAACTCACCC-TGA-TTAGAAACGGCTTTGG-CTGAT-AATGGTA--------------------TTGCT-TTGAG----TGA-C--GA-ACTATCTT-GAAATCTG
gi|86515 : tCCGCAAA-TCACCC-TGAATT-GAA-CG-CTTCGG-CTGATGA-T-GTT--------------------TGGCGTTTGAG----TGA-C--G-CAC-T-ATT-G-AAT
gi|86516 : ttacTACCACAAA-TCACCACTGAATTAGAA-CG-TTTTCG-CCGAT-A-T
gi|86517 : tTACTACAAA-TCACCCCTGAATTAGAA-CG-CTTGGG-CCAAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-GTT-G-AATCTG
gi|86518 : CAAA-TCACCCCTGAATTAGAA-AG-CTTGGG-CCGAT-A-TAGTA--------------------TTGCG-TTAGG----TGA-T--GACAC-T-GTC-G-AATCTG
gi|86519 : GAA-CG-CATTGG-CTGAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-T--GGCAC-A-TTT-G-AAT
blockSeqs : C A G G N G A CTGTATTGTAAAGTATTCTA T TTTA T TG TATC G A
blockSeqs : . . . G . . . . . . . . AA . .
blockSeqs : . . . G . . . . . . . . TT . .
blockSeqs : . . . A . . . . . . . . AC . .
blockSeqs : . . . T . . . . . . . . TG . .
blockSeqs : . . . T . . . . . . . . AA . .
blockSeqs : . . . T . . . . . . . . AG . .
blockSeqs : . . . G . . . . . . . . TG . .
blockSeqs : . . . T . . . . . . . . AA . .
blockSeqs : . . . T . . . . . . . . TA . .
blockSeqs : . . . T . . . . . . . . AG . .
blockSeqs : . . . C . . . . . . . . TG . .
blockSeqs : . . . T . . . . . . . . AT . .
blockSeqs : . . . G . . . . . . . .
blockSeqs : . . G . . . .
blockSeqs : . . T . . .
blockSeqCons :
originalCons : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
finalCons : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
Alignments
lowQualScore : 22222222222222222222
lowQualScore : 2 2 2 1 2 2 2 00000000000000000000 2 5555 2 33 7777 2 2
lowQualScore : . . . . . . . .................... . .... . .. .... . .
lowQualScore : 7 4 4 0 4 4 4 33333333333333333333 7 7777 7 77 0000 9 9
consensus : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
Reference ( family-830 ) : TACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTNGG-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-NTT-G-AATCTG
gi|86503 : TACCGCAAA-TCACCCCTGAATTAGAA-CA-CTTTAG-CAGAT-A-TAGTA--------------------TTGCG-TTGCA----TGA-C--GACAC-A-ATT-G-AATGTG
gi|86504 : tTACCGCAAA-TCACCCCTGAATTAGAA-TG-CTTGGG-CCGAT-A-TAGTA--------------------TTGCT-TTGAG----TGA-C--AACAC-A-ATT-G-AAT
gi|86505 : tTACCGCAAA-TCACCCCTGAATTAGAA-CA-CTTGGT-CCGAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-T--GGCAT-T-TTT-G-AATCTG
gi|86506 : tACCGCAAA-TCACCCCTGAATTAAAA-CG-CTCGGG-TGGAT-A-TAGTA--------------------TTGCG-TTGAG-----GA-C--GACAC-A-CTTGG-AATGTG
gi|86507 : tcTACCGCAAA-TCACCCCTGAATTA-----A-TTGAGG-CCAAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-TTGAACAC-T-GTT-G-AATCTG
gi|86508 : tTACCGCAAA-TCACCCCTGAATTAGAA-CG-CTTTGG-CAGAT-A-TAGTA--------------------TTGTG-TTGCG----TGA-C--GATAT-A-ATT-G-AGT
gi|86509 : tTATCGCAAA-TCACCCCTGAATTAGAA-TG-CTTTGGNCCGTT-A--AATA--------------------T
gi|86510 : tTACCACAAA-TCACCCCTGAATTATAA-AG-CTTTGG-CCACT-A-TAGTA--------------------TTGAG-TTGGGTTTATGATC--GACAC-A-GTT-G-AATCTG
gi|86511 : tGAA-CG-CTTGGG-CTGAT-A-TAATA--------------------TTGCG-TTGGG----TGA-T--GACAC-T-GTT-G-AATCTG
gi|86512 : ttaccgcatatcTATCACAAT-TCACCCACGAATTAGAA-CA-CTTTGG-CCAAT-A-CAGAA--------------------TTGCA-ATGTG----TGA-C--GATA
gi|86513 : tTACCACAAA-TCACACCAGAATTAAAC-CA-TTTTGG-CCGAT-A-AAGTACTGTATTGTAAAGTATTCTATTGCG-TTGGG----TGA-C--GACAC-A-ATT-G-AAT
gi|86514 : tTACCGCAAACTCACCC-TGA-TTAGAAACGGCTTTGG-CTGAT-AATGGTA--------------------TTGCT-TTGAG----TGA-C--GA-ACTATCTT-GAAATCTG
gi|86515 : tCCGCAAA-TCACCC-TGAATT-GAA-CG-CTTCGG-CTGATGA-T-GTT--------------------TGGCGTTTGAG----TGA-C--G-CAC-T-ATT-G-AAT
gi|86516 : ttacTACCACAAA-TCACCACTGAATTAGAA-CG-TTTTCG-CCGAT-A-T
gi|86517 : tTACTACAAA-TCACCCCTGAATTAGAA-CG-CTTGGG-CCAAT-A-TAGTA--------------------TTGCG-TTGGG----TGA-C--GACAC-A-GTT-G-AATCTG
gi|86518 : CAAA-TCACCCCTGAATTAGAA-AG-CTTGGG-CCGAT-A-TAGTA--------------------TTGCG-TTAGG----TGA-T--GACAC-T-GTC-G-AATCTG
gi|86519 : GAA-CG-CATTGG-CTGAT-A-TTGTA--------------------TTGCG-TTGGG----TGA-T--GGCAC-A-TTT-G-AAT