lowQualScore : 1111 111 11111111 1 11111
lowQualScore : 5 2 2 5555 0000 444 0 444 2 0 999 5 22222222 0 33 7 44444
lowQualScore : . . . .... .... ... . ... . . ... . ........ . .. . .....
lowQualScore : 0 5 5 3333 6666 444 2 444 5 9 555 9 22222222 5 44 3 11111
consensus : ATATATTA-CC-TGG-TAAAC----A----TAAA---ATA---TTTTC-AGTCGGTACGAATTTA-----ATGGGTCGGT--CGGCACA-TCT---C-GGAAAA
Reference ( gi|19048 ) : ATATATTA-CC-TGG-TAAAC----A----TAAA---ATA---TTTTC-AGTTGTTGCGAATTCA-----ATGAGTCGGT--CGGCACA-TCT---A-GGAAAA
gi|19049 : ATATATTT-AC-TGG-TAAAC----A----TAAA---ATA---TTTTC-AGTTGTTGCAAATTCA-----ATGAGTCGGT--CGGCACATTCT---A-GGAAAA
gi|19050 : ATATTTTA-C--TGG-TAAAC----A----TAAA----TA---TTTTC-AGTTGTTGCAAATTCA-----ATG-GTCGGT--CGGCACATTCT---A-GGAAAA
gi|19052 : atATATATTA-CG-TGG-TAAAC----A-----AAA---ATA---TTTTC-AGTTGGTACAAATTTACAGTAATGGGTCGGT--CGGCACA-TCT---C-GGAAAA
gi|19053 : ATATATTA-AC-GGG-TAAAC----A----TAAA---ATA---TTTTCAAGTTGGTACCAGT--A-----TTGGGTCGGT--CGGCACA-TCT---C-GGAAAA
gi|19054 : ATATATTA-CC-TGG-TAAAC----A----TAAA---TTA---TTTTC-ACTGGGCACGAATTTA-----ATGGGTCGGC--CGGCGC
gi|19055 : ATATATTA-CC-TGG-TAAAC----A----TAAA---CAA---ATTTC-AGCTGGTACGAAATTT-----ACGGGTCGGT--CGGAAAA-TCT---C-AGAAAA
gi|19051 : ATAT-TTA-CC-TGGGTAAAC---------CAAA---ATAATGTCTAC-AGTTGTT-CAAATTTC-----ATGGGTTGGTACCGGCACA-TCT---A-GAAAA
gi|19056 : ACATATTA-CGGTGG-TAAA-----A----TAAA---ATA---TTTTC-AGTTGGTAC-AGT--------ATTGGTCGGT--CGG-ACA-TCT---C-GGAAAA
gi|19057 : ATATAATAACC-TGT-TAA-C----A----TAAA---AT----TTTTC-AGTGGTT-CAAATTAAT----ATG-GTTGGT--CGCCAAA-TCT---C-GAAAA
gi|19058 : ATATAATAACC-TGT-TAA-C----A----TAAA---AT----TTTTC-AGTGGTT-C-AATTAAT----ATG-GTTGGT--CGCCAAA-TCT---C-GAAAA
gi|19059 : ATATTA-CG-TAG-TAAAC----A------AA---ATA---TTTTC-AGTTGGTACGAATTCA-----ATGATTCGGT--CGGAACA-TCTTCGATGGAAAA
gi|19062 : ATATTG-CC-ACG-TAAAC----A----CAAA---ATA---TTTTC-TGTAAGAACGAATTTA-----CTGGGTCGGT---GACACA-TCT---A-
gi|19064 : ATATCA-CC-TGG-TAAAT----A----CAAATAAAGA---TTTTC-AGTCGGAACGAATTTA-----CTGGGTCGGT--CGG
gi|19061 : ATATTA-TC-TGG-TGAAT----ACAAATAAA---AGA---TTTTC-AGTCGGAACGAATTTA-----CTGGGTCGGT--CGG
gi|19063 : ATATTA-CC-TGG-TAAATACGAA----TAAA---A-A---TTTTC-AGTCGGAAC-AATTTA-----CTGGGTCGGT--CGG
gi|19060 : ATATCA-AC-TGG-TAAAT----ACAAATAAA---AGA---TTTTC-AGTCGA-ACGAATTTA-----CTGGGTCGGT--CGG
Alignments
lowQualScore : 1111
lowQualScore : 4 2 2 5555 444 444 2 7 0 3 55555 4 33 6 77777
lowQualScore : . . . .... ... ... . . . . ..... . .. . .....
lowQualScore : 7 4 4 0000 111 111 4 3 9 0 99999 7 22 7 66666
consensus : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
Reference ( family-829 ) : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19048 : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTTGTTGCGAATTCA-----ATG-AGTCGGT--CGGCACA-TCT----AGGAAAA
gi|19049 : ATATATTT-AC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTTGTTGCAAATTCA-----ATG-AGTCGGT--CGGCACATTCT----AGGAAAA
gi|19050 : ATATTTTA-C--TGG-TAAACA----TAAA----TA---TTTTCA-GTTGTTGCAAATTCA-----ATG-G-TCGGT--CGGCACATTCT----AGGAAAA
gi|19051 : atATAT-TTA-CC-TGGGTAAAC-----CAAA---ATAATGTCTACA-GTTGTT-CAAATTTC-----ATG-GGTTGGTACCGGCACA-TCT----AGAAAA
gi|19052 : ATATATTA-CG-TGG-TAAACA-----AAA---ATA---TTTTCA-GTTGGTACAAATTTACAGTAATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19053 : ATATATTA-AC-GGG-TAAACA----TAAA---ATA---TTTTCAAGTTGGTACCAGTAT-------TG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19054 : ATATATTA-CC-TGG-TAAACA----TAAA---TTA---TTTTCA-CTGGGCACGAATTTA-----ATG-GGTCGGC--CGGCGC
gi|19055 : ATATATTA-CC-TGG-TAAACA----TAAA---CAA---ATTTCA-GCTGGTACGAAATTT-----ACG-GGTCGGT--CGGAAAA-TCT----CAGAAAA
gi|19056 : ACATATTA-CGGTGG-TAAA-A----TAAA---ATA---TTTTCA-GTTGGTAC-AGT--------ATT-GGTCGGT--CGG-ACA-TCT----CGGAAAA
gi|19057 : ATATAATAACC-TGT-TAA-CA----TAAA---AT----TTTTCA-GT-GGTTCAAA-TTA-----ATATGGTTGGT--CGCCAAA-TCT----CGAAAA
gi|19058 : ATATAATAACC-TGT-TAA-CA----TAAA---AT----TTTTCA-GT-GGTTCAA--TTA-----ATATGGTTGGT--CGCCAAA-TCT----CGAAAA
gi|19059 : ATATTA-CG-TAG-TAAACA------AA---ATA---TTTTCA-GTTGGTACGAATTCA-----ATG-ATTCGGT--CGGAACA-TCTTCGATGGAAAA
gi|19060 : ATATCA-AC-TGG-TAAATACAAATAAA---AGA---TTTTCA-GTCGA-ACGAATTTA-----CTG-GGTCGGT--CGG
gi|19061 : ATATTA-TC-TGG-TGAATACAAATAAA---AGA---TTTTCA-GTCGGAACGAATTTA-----CTG-GGTCGGT--CGG
gi|19062 : ATATTG-CC-ACG-TAAACA----CAAA---ATA---TTTTCT-GTAAGAACGAATTTA-----CTG-GGTCGGT---GACACA-TCT----
gi|19063 : ATATTA-CC-TGG-TAAATACGAATAAA---A-A---TTTTCA-GTCGGAAC-AATTTA-----CTG-GGTCGGT--CGGag
gi|19064 : ATATCA-CC-TGG-TAAATA----CAAATAAAGA---TTTTCA-GTCGGAACGAATTTA-----CTG-GGTCGGT--CGG
Alignments
lowQualScore : 1111
lowQualScore : 4 2 2 5555 444 444 2 7 0 3 55555 4 33 6 77777
lowQualScore : . . . .... ... ... . . . . ..... . .. . .....
lowQualScore : 7 4 4 0000 111 111 4 3 9 0 99999 7 22 7 66666
consensus : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
Reference ( family-829 ) : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19048 : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTTGTTGCGAATTCA-----ATG-AGTCGGT--CGGCACA-TCT----AGGAAAA
gi|19049 : ATATATTT-AC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTTGTTGCAAATTCA-----ATG-AGTCGGT--CGGCACATTCT----AGGAAAA
gi|19050 : ATATTTTA-C--TGG-TAAACA----TAAA----TA---TTTTCA-GTTGTTGCAAATTCA-----ATG-G-TCGGT--CGGCACATTCT----AGGAAAA
gi|19051 : atATAT-TTA-CC-TGGGTAAAC-----CAAA---ATAATGTCTACA-GTTGTT-CAAATTTC-----ATG-GGTTGGTACCGGCACA-TCT----AGAAAA
gi|19052 : ATATATTA-CG-TGG-TAAACA-----AAA---ATA---TTTTCA-GTTGGTACAAATTTACAGTAATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19053 : ATATATTA-AC-GGG-TAAACA----TAAA---ATA---TTTTCAAGTTGGTACCAGTAT-------TG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19054 : ATATATTA-CC-TGG-TAAACA----TAAA---TTA---TTTTCA-CTGGGCACGAATTTA-----ATG-GGTCGGC--CGGCGC
gi|19055 : ATATATTA-CC-TGG-TAAACA----TAAA---CAA---ATTTCA-GCTGGTACGAAATTT-----ACG-GGTCGGT--CGGAAAA-TCT----CAGAAAA
gi|19056 : ACATATTA-CGGTGG-TAAA-A----TAAA---ATA---TTTTCA-GTTGGTAC-AGT--------ATT-GGTCGGT--CGG-ACA-TCT----CGGAAAA
gi|19057 : ATATAATAACC-TGT-TAA-CA----TAAA---AT----TTTTCA-GT-GGTTCAAA-TTA-----ATATGGTTGGT--CGCCAAA-TCT----CGAAAA
gi|19058 : ATATAATAACC-TGT-TAA-CA----TAAA---AT----TTTTCA-GT-GGTTCAA--TTA-----ATATGGTTGGT--CGCCAAA-TCT----CGAAAA
gi|19059 : ATATTA-CG-TAG-TAAACA------AA---ATA---TTTTCA-GTTGGTACGAATTCA-----ATG-ATTCGGT--CGGAACA-TCTTCGATGGAAAA
gi|19060 : ATATCA-AC-TGG-TAAATACAAATAAA---AGA---TTTTCA-GTCGA-ACGAATTTA-----CTG-GGTCGGT--CGG
gi|19061 : ATATTA-TC-TGG-TGAATACAAATAAA---AGA---TTTTCA-GTCGGAACGAATTTA-----CTG-GGTCGGT--CGG
gi|19062 : ATATTG-CC-ACG-TAAACA----CAAA---ATA---TTTTCT-GTAAGAACGAATTTA-----CTG-GGTCGGT---GACACA-TCT----
gi|19063 : ATATTA-CC-TGG-TAAATACGAATAAA---A-A---TTTTCA-GTCGGAAC-AATTTA-----CTG-GGTCGGT--CGGag
gi|19064 : ATATCA-CC-TGG-TAAATA----CAAATAAAGA---TTTTCA-GTCGGAACGAATTTA-----CTG-GGTCGGT--CGG
blockSeqs : A G G CAAA TAA ATG A T A CAGTA T AC T TCGAT
blockSeqs : A . . CAAA . . . T A . T . T A
blockSeqs : . . . CGAA . . . T A . . . . A
blockSeqs : . . . . . . . T A . . . . A
blockSeqs : . . . . . . . T C . . . . C
blockSeqs : . . . . . . . G G . . . . C
blockSeqs : . . . . . . . T G . . . . C
blockSeqs : . . . . . . . T A . . . . C
blockSeqs : . . . . . . . T A . . . . C
blockSeqs : . . . . . . . C G . . . . C
blockSeqs : . . . . . . . C G . . . .
blockSeqs : . . . . . . . A G . . .
blockSeqs : . . . . . . . C G . . .
blockSeqs : . . . . . . . C G . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons :
originalCons : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
finalCons : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
Alignments
lowQualScore : 1111
lowQualScore : 4 2 2 5555 444 444 2 7 0 3 55555 4 33 6 77777
lowQualScore : . . . .... ... ... . . . . ..... . .. . .....
lowQualScore : 7 4 4 0000 111 111 4 3 9 0 99999 7 22 7 66666
consensus : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
Reference ( family-829 ) : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTCGGTACGAATTTA-----ATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19048 : ATATATTA-CC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTTGTTGCGAATTCA-----ATG-AGTCGGT--CGGCACA-TCT----AGGAAAA
gi|19049 : ATATATTT-AC-TGG-TAAACA----TAAA---ATA---TTTTCA-GTTGTTGCAAATTCA-----ATG-AGTCGGT--CGGCACATTCT----AGGAAAA
gi|19050 : ATATTTTA-C--TGG-TAAACA----TAAA----TA---TTTTCA-GTTGTTGCAAATTCA-----ATG-G-TCGGT--CGGCACATTCT----AGGAAAA
gi|19051 : atATAT-TTA-CC-TGGGTAAAC-----CAAA---ATAATGTCTACA-GTTGTT-CAAATTTC-----ATG-GGTTGGTACCGGCACA-TCT----AGAAAA
gi|19052 : ATATATTA-CG-TGG-TAAACA-----AAA---ATA---TTTTCA-GTTGGTACAAATTTACAGTAATG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19053 : ATATATTA-AC-GGG-TAAACA----TAAA---ATA---TTTTCAAGTTGGTACCAGTAT-------TG-GGTCGGT--CGGCACA-TCT----CGGAAAA
gi|19054 : ATATATTA-CC-TGG-TAAACA----TAAA---TTA---TTTTCA-CTGGGCACGAATTTA-----ATG-GGTCGGC--CGGCGC
gi|19055 : ATATATTA-CC-TGG-TAAACA----TAAA---CAA---ATTTCA-GCTGGTACGAAATTT-----ACG-GGTCGGT--CGGAAAA-TCT----CAGAAAA
gi|19056 : ACATATTA-CGGTGG-TAAA-A----TAAA---ATA---TTTTCA-GTTGGTAC-AGT--------ATT-GGTCGGT--CGG-ACA-TCT----CGGAAAA
gi|19057 : ATATAATAACC-TGT-TAA-CA----TAAA---AT----TTTTCA-GT-GGTTCAAA-TTA-----ATATGGTTGGT--CGCCAAA-TCT----CGAAAA
gi|19058 : ATATAATAACC-TGT-TAA-CA----TAAA---AT----TTTTCA-GT-GGTTCAA--TTA-----ATATGGTTGGT--CGCCAAA-TCT----CGAAAA
gi|19059 : ATATTA-CG-TAG-TAAACA------AA---ATA---TTTTCA-GTTGGTACGAATTCA-----ATG-ATTCGGT--CGGAACA-TCTTCGATGGAAAA
gi|19060 : ATATCA-AC-TGG-TAAATACAAATAAA---AGA---TTTTCA-GTCGA-ACGAATTTA-----CTG-GGTCGGT--CGG
gi|19061 : ATATTA-TC-TGG-TGAATACAAATAAA---AGA---TTTTCA-GTCGGAACGAATTTA-----CTG-GGTCGGT--CGG
gi|19062 : ATATTG-CC-ACG-TAAACA----CAAA---ATA---TTTTCT-GTAAGAACGAATTTA-----CTG-GGTCGGT---GACACA-TCT----
gi|19063 : ATATTA-CC-TGG-TAAATACGAATAAA---A-A---TTTTCA-GTCGGAAC-AATTTA-----CTG-GGTCGGT--CGGag
gi|19064 : ATATCA-CC-TGG-TAAATA----CAAATAAAGA---TTTTCA-GTCGGAACGAATTTA-----CTG-GGTCGGT--CGG