lowQualScore : 2 666 00 1 2 7 5 2 66666 1 66666 2 99 7 2 0 9999999 2 33 2 2 2
lowQualScore : . ... .. . . . . . ..... . ..... . .. . . . ....... . .. . . .
lowQualScore : 5 999 44 7 5 6 1 5 22222 6 22222 5 77 0 9 1 3333333 9 99 9 9 9
consensus : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAATT-GAA-----AATA-----A-TTCTN-CTCAAACATG-ATTTGTT-------TGTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
Reference ( gi|70322 ) : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCAACT-GAA-----AATA-----A-TTCTG-CTTAAACATG-ATTTGTT-------TGTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70324 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAATT-GAA-----AATA-----A-TTCTG-CTCAAACATG-ATTTGTT-------TGTGTA-TTGTTG--T-AG-TA-CTCTTTCTT
gi|70321 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAATT-GAA-----AATA-----A-TTCTT-CTCAAACATG-ATTTGTT-------TGTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70325 : AAAATATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCGATT-GAA-----AATA-----A-TTCTG-CTCAAACATG-ATTTGTT-------TGTGTA-TTGTTG--T-AG-CA-CTCTCT
gi|70323 : AAAG-ATAT-TCT---ACTT-GTTTAAATTTA-TGCAGCAACT-G-A-----AATA-----A-TTCTG-CTTAAACATGAATTTGTTTTGTAAGTGTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70327 : AAAGTATAT-TCT---ACTTTGCTT-AATTTA-TGCAGCAATT-GAA-----AATA-----ACTTCTG-CTCAAACATG-ATTTGCT-------TGTGTA----TTG--T-AG-CA-CTCTTTCTT
gi|70326 : AAAATATAT-TCT---ACTTTGTT-AAATTTA-TTCAGCAATT-GAA-----AAGA-----C-TTCTT-CTCAAACATG-ATTTGTT-------TGTGTA-TTGTTG--TAAG-CA-CTCTTTCTT
gi|70330 : AAAGCATAT-TCT---ACTTTGCTTAAATTTA-TGCAGCAATT-GAA-----AATA-----A-TTTTG-CTCAA
gi|70328 : AAAATATAT-TCT---ACTTTATTTAACTTTA-TTCATCCATTGGAA-----AAGA-----A-TTCT--CTCAAACATG-ATGTG----------AGGTA-TTTTTG--T-AG-CA-CTCTTT
gi|70329 : AAAATATAT-TCC---ACTTTGTTTAACTTTA-T------------------------------TCTT-CTCAAACGTG-ATTTGTT-------TGTGTA-TTGTTG--T-AG-CA-CTCTTTGTT
gi|70332 : AAAGTATAT-TCT---AGTTAGTCTTAATTT--T-CAGCAAAT-TGA-----AATA-----A-T-CTG-CC-AAACCTG-ATT------------G-GTG-TTGTTG--T-AG-CA-CTC-TTCTT
gi|70331 : AAAATATAT-TCT---ACTTTGTTTCAATTTA-TTCAGCAATT-GTA-----AAGA-----A-TTCTT-CT
gi|70333 : AAATATAT-TCT---ACTTTGTTT-AATTTATTGCAGCAACT-GAA-----AATA-----A-TTCTGACCT-AACATG-ATTTGTT-------TGTGTA-TTGTTGCTT-A--CATCTTTTCCTT
gi|70334 : AAATATGTCTCTGCCACTTTGTT-AACTTTA-TGCA---ATT-GAA-----AATA-----A-TTCTT-TTCAAACAAA-ATTTGTT-------TTTGCATTTGTTG--T-TT-GA-C-CTTTCTT
gi|70335 : ATAA-TCT---ACTTT----AACTTTT-TTCAGCAATT-GAA-----AAGA-----A-GTATT-CTCAAATATT-ATTTGTT-------TGTGTA-TTGTTG--T-AG-CA-CCCTTTCTT
gi|70336 : ATAT-TTC---ACTTTATTTAA--TTA-TTCATTA-TT-GAA-----AA-G-----A-TCCTT-CTAAAACATG-ATTTGGT-------TGTAAT-TTGTTG--T--G-CG--TTTTTCTT
gi|70337 : TAC-TCTT--ACTT-GCTGAATTTCA-TTTAACAATT-GAATAGAAAATAGAGATA-TTCT----CAAACACG-ATTTGCT-------TGTGTA-TT-TTA--T-AGACA-CTTTTTCTT
Alignments
lowQualScore : 2 666 1 2 5 2 2 55555 0 444 2 3 2 8888888 2 33 2 2 2
lowQualScore : . ... . . . . . ..... . ... . . . ....... . .. . . .
lowQualScore : 4 555 1 4 6 4 4 99999 9 111 4 3 7 7777777 7 77 7 7 7
consensus : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
Reference ( family-825 ) : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70321 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAA-TT-GAA-----AATA---A-TTCTTCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70322 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCAA-CT-GAA-----AATA---A-TTCTGCTTAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70323 : AAAG-ATAT-TCT---ACTT-GTTTAAATTTA-TGCAGCAA-CT-GAA-----A-TA---A-TTCTGCTTAAACATGAATTTGTTTTGTAAGTGTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70324 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAA-TT-GAA-----AATA---A-TTCTGCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-TA-CTCTTTCTT
gi|70325 : AAAATATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCGA-TT-GAA-----AATA---A-TTCTGCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTCT
gi|70326 : AAAATATAT-TCT---ACTTTGTT-AAATTTA-TTCAGCAA-TT-GAA-----AAGA---C-TTCTTCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--TAAG-CA-CTCTTTCTT
gi|70327 : AAAGTATAT-TCT---ACTTTGCTT-AATTTA-TGCAGCAA-TT-GAA-----AATA---ACTTCTGCTCAAACATGA-TTTGCTT-------GTGTA----TTG--T-AG-CA-CTCTTTCTT
gi|70328 : AAAATATAT-TCT---ACTTTATTTAACTTTA-TTCATCCA-TTGGAA-----AAGA---A-TTCT-CTCAAACATGA-TGTG----------AGGTA-TTTTTG--T-AG-CA-CTCTTT
gi|70329 : AAAATATAT-TCC---ACTTTGTTTAACTTTA-T-----------------------------TCTTCTCAAACGTGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTGTT
gi|70330 : AAAGCATAT-TCT---ACTTTGCTTAAATTTA-TGCAGCAA-TT-GAA-----AATA---A-TTTTGCTCAA
gi|70331 : AAAATATAT-TCT---ACTTTGTTTCAATTTA-TTCAGCAA-TT-GTA-----AAGA---A-TTCTTCT
gi|70332 : AAAGTATAT-TCT---AGTTAGTCTTAATTT---TCAGCAAATT-GAA-----A-TA---A-T-CTGC-CAAACCTGA-TT------------G-GTG-TTGTTG--T-AG-CA-CTC-TTCTT
gi|70333 : AAATATAT-TCT---ACTTTGTTT-AATTTATTGCAGCAA-CT-GAA-----AATA---A-TTCTGACCTAACATGA-TTTGTTT-------GTGTA-TTGTTGCTT-A--CATCTTTTCCTT
gi|70334 : AAATATGTCTCTGCCACTTTGTT-AACTTTA-T---GCAA-TT-GAA-----AATA---A-TTCTTTTCAAACAAAA-TTTGTTT-------TTGCATTTGTTG--T-TT-GA-C-CTTTCTT
gi|70335 : ATAA-TCT---ACTTT----AACTTTT-TTCAGCAA-TT-GAA-----AAGA---A-GTATTCTCAAATATTA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CCCTTTCTT
gi|70336 : ATAT-TTC---ACTTTATTTAA--TTA-TTCATTA--TT-GAA-----AA-G---A-TCCTTCTAAAACATGA-TTTGGTT-------GTAAT-TTGTTG--T--G-CG--TTTTTCTT
gi|70337 : TAC-TCTT--ACTT-GCTGAATTTCA-TTTAACAA-TT-GAATAGAAAATAGAGA-T-ATTCTCAAACACGA-TTTGCTT-------GTGTA-TT-TTA--T-AGACA-CTTTTTCTT
Alignments
lowQualScore : 2 666 1 2 5 2 2 55555 0 444 2 3 2 8888888 2 33 2 2 2
lowQualScore : . ... . . . . . ..... . ... . . . ....... . .. . . .
lowQualScore : 4 555 1 4 6 4 4 99999 9 111 4 3 7 7777777 7 77 7 7 7
consensus : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
Reference ( family-825 ) : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70321 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAA-TT-GAA-----AATA---A-TTCTTCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70322 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCAA-CT-GAA-----AATA---A-TTCTGCTTAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70323 : AAAG-ATAT-TCT---ACTT-GTTTAAATTTA-TGCAGCAA-CT-GAA-----A-TA---A-TTCTGCTTAAACATGAATTTGTTTTGTAAGTGTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70324 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAA-TT-GAA-----AATA---A-TTCTGCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-TA-CTCTTTCTT
gi|70325 : AAAATATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCGA-TT-GAA-----AATA---A-TTCTGCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTCT
gi|70326 : AAAATATAT-TCT---ACTTTGTT-AAATTTA-TTCAGCAA-TT-GAA-----AAGA---C-TTCTTCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--TAAG-CA-CTCTTTCTT
gi|70327 : AAAGTATAT-TCT---ACTTTGCTT-AATTTA-TGCAGCAA-TT-GAA-----AATA---ACTTCTGCTCAAACATGA-TTTGCTT-------GTGTA----TTG--T-AG-CA-CTCTTTCTT
gi|70328 : AAAATATAT-TCT---ACTTTATTTAACTTTA-TTCATCCA-TTGGAA-----AAGA---A-TTCT-CTCAAACATGA-TGTG----------AGGTA-TTTTTG--T-AG-CA-CTCTTT
gi|70329 : AAAATATAT-TCC---ACTTTGTTTAACTTTA-T-----------------------------TCTTCTCAAACGTGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTGTT
gi|70330 : AAAGCATAT-TCT---ACTTTGCTTAAATTTA-TGCAGCAA-TT-GAA-----AATA---A-TTTTGCTCAA
gi|70331 : AAAATATAT-TCT---ACTTTGTTTCAATTTA-TTCAGCAA-TT-GTA-----AAGA---A-TTCTTCT
gi|70332 : AAAGTATAT-TCT---AGTTAGTCTTAATTT---TCAGCAAATT-GAA-----A-TA---A-T-CTGC-CAAACCTGA-TT------------G-GTG-TTGTTG--T-AG-CA-CTC-TTCTT
gi|70333 : AAATATAT-TCT---ACTTTGTTT-AATTTATTGCAGCAA-CT-GAA-----AATA---A-TTCTGACCTAACATGA-TTTGTTT-------GTGTA-TTGTTGCTT-A--CATCTTTTCCTT
gi|70334 : AAATATGTCTCTGCCACTTTGTT-AACTTTA-T---GCAA-TT-GAA-----AATA---A-TTCTTTTCAAACAAAA-TTTGTTT-------TTGCATTTGTTG--T-TT-GA-C-CTTTCTT
gi|70335 : ATAA-TCT---ACTTT----AACTTTT-TTCAGCAA-TT-GAA-----AAGA---A-GTATTCTCAAATATTA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CCCTTTCTT
gi|70336 : ATAT-TTC---ACTTTATTTAA--TTA-TTCATTA--TT-GAA-----AA-G---A-TCCTTCTAAAACATGA-TTTGGTT-------GTAAT-TTGTTG--T--G-CG--TTTTTCTT
gi|70337 : TAC-TCTT--ACTT-GCTGAATTTCA-TTTAACAA-TT-GAATAGAAAATAGAGA-T-ATTCTCAAACACGA-TTTGCTT-------GTGTA-TT-TTA--T-AGACA-CTTTTTCTT
blockSeqs : C GCC A T G A G TAGAA GAG C G A TGTAAGT T CT A A T
blockSeqs : . T A . G . . . . . G . . . . . . .
blockSeqs : . . A . A . . . . . G . . . . . . .
blockSeqs : . . A . G . . . . . G . . . . . . .
blockSeqs : . . A . T . . . . . T . . . . . . .
blockSeqs : . . A . G . . . . . G . . . . . . .
blockSeqs : . . C . T . . . . . T . . . . . . .
blockSeqs : . . C . G . . . . . G . . . . . . .
blockSeqs : . . A . T . . . . . T . . . . . . .
blockSeqs : . . A . T . . . . . G . . . . . . .
blockSeqs : . . A . G . . . . . G . . . . . . .
blockSeqs : . . A . T . . . . . T . . . . . . .
blockSeqs : . . C . T . . . . . T . . . . . . .
blockSeqs : . . C . T . . . . . T . . . . . . .
blockSeqs : . . T . . . . . . . T
blockSeqs : . . . . . . . . . . .
blockSeqCons :
originalCons : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
finalCons : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
Alignments
lowQualScore : 2 666 1 2 5 2 2 55555 0 444 2 3 2 8888888 2 33 2 2 2
lowQualScore : . ... . . . . . ..... . ... . . . ....... . .. . . .
lowQualScore : 4 555 1 4 6 4 4 99999 9 111 4 3 7 7777777 7 77 7 7 7
consensus : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
Reference ( family-825 ) : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TNCAGCAA-TT-GAA-----AATA---A-TTCTNCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70321 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAA-TT-GAA-----AATA---A-TTCTTCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70322 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCAA-CT-GAA-----AATA---A-TTCTGCTTAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70323 : AAAG-ATAT-TCT---ACTT-GTTTAAATTTA-TGCAGCAA-CT-GAA-----A-TA---A-TTCTGCTTAAACATGAATTTGTTTTGTAAGTGTGTA-TTGTTG--T-AG-CA-CTCTTTCTT
gi|70324 : AAAGTATAT-TCT---ACTTTGTTTAAATTTA-TACAGCAA-TT-GAA-----AATA---A-TTCTGCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-TA-CTCTTTCTT
gi|70325 : AAAATATAT-TCT---ACTTTGTTTAAATTTA-TGCAGCGA-TT-GAA-----AATA---A-TTCTGCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTCT
gi|70326 : AAAATATAT-TCT---ACTTTGTT-AAATTTA-TTCAGCAA-TT-GAA-----AAGA---C-TTCTTCTCAAACATGA-TTTGTTT-------GTGTA-TTGTTG--TAAG-CA-CTCTTTCTT
gi|70327 : AAAGTATAT-TCT---ACTTTGCTT-AATTTA-TGCAGCAA-TT-GAA-----AATA---ACTTCTGCTCAAACATGA-TTTGCTT-------GTGTA----TTG--T-AG-CA-CTCTTTCTT
gi|70328 : AAAATATAT-TCT---ACTTTATTTAACTTTA-TTCATCCA-TTGGAA-----AAGA---A-TTCT-CTCAAACATGA-TGTG----------AGGTA-TTTTTG--T-AG-CA-CTCTTT
gi|70329 : AAAATATAT-TCC---ACTTTGTTTAACTTTA-T-----------------------------TCTTCTCAAACGTGA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CTCTTTGTT
gi|70330 : AAAGCATAT-TCT---ACTTTGCTTAAATTTA-TGCAGCAA-TT-GAA-----AATA---A-TTTTGCTCAA
gi|70331 : AAAATATAT-TCT---ACTTTGTTTCAATTTA-TTCAGCAA-TT-GTA-----AAGA---A-TTCTTCT
gi|70332 : AAAGTATAT-TCT---AGTTAGTCTTAATTT---TCAGCAAATT-GAA-----A-TA---A-T-CTGC-CAAACCTGA-TT------------G-GTG-TTGTTG--T-AG-CA-CTC-TTCTT
gi|70333 : AAATATAT-TCT---ACTTTGTTT-AATTTATTGCAGCAA-CT-GAA-----AATA---A-TTCTGACCTAACATGA-TTTGTTT-------GTGTA-TTGTTGCTT-A--CATCTTTTCCTT
gi|70334 : AAATATGTCTCTGCCACTTTGTT-AACTTTA-T---GCAA-TT-GAA-----AATA---A-TTCTTTTCAAACAAAA-TTTGTTT-------TTGCATTTGTTG--T-TT-GA-C-CTTTCTT
gi|70335 : ATAA-TCT---ACTTT----AACTTTT-TTCAGCAA-TT-GAA-----AAGA---A-GTATTCTCAAATATTA-TTTGTTT-------GTGTA-TTGTTG--T-AG-CA-CCCTTTCTT
gi|70336 : ATAT-TTC---ACTTTATTTAA--TTA-TTCATTA--TT-GAA-----AA-G---A-TCCTTCTAAAACATGA-TTTGGTT-------GTAAT-TTGTTG--T--G-CG--TTTTTCTT
gi|70337 : TAC-TCTT--ACTT-GCTGAATTTCA-TTTAACAA-TT-GAATAGAAAATAGAGA-T-ATTCTCAAACACGA-TTTGCTT-------GTGTA-TT-TTA--T-AGACA-CTTTTTCTT