lowQualScore : 33 2 5 5 2 2 2 2 8 444 2 1 2 2 0 2 55 33 2 44 5 2 9
lowQualScore : .. . . . . . . . . ... . . . . . . .. .. . .. . . .
lowQualScore : 44 5 0 5 5 5 7 7 0 999 7 0 5 5 2 5 99 44 5 33 3 5 6
consensus : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAA-GCCCCGCCT-ACCGTTTC
Reference ( gi|100718 ) : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C--AAAGCG-TGCAA-GCCCCGCTT-ACCGTATC
gi|100719 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C---AAGCG-TGCAA-GCCCCGCTT-ACCGTATC
gi|100720 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA--TGT-C-ATT-CA--C--AAAGCG-TGCAG---CCCGCTT-ACCGTATC
gi|100722 : AATA--CCAAG-CGTA-CA--CCAC--CCTACCATTTC-ATG-T-AAACC-A-T-TTA-CCAT-C-A-T-CA--C--AAAGCG-TGCAA-GCCCTGCCT-ACCGT
gi|100725 : AATG--CCAAT-CGTG-CAGGCCAT-TCCTACTATTCC-ATG-T-AAACC-A-T-TCA-CCAT-C-ATT-CA--T--AAAGCA-TGCAA-GCCCCGCCT-ACtt
gi|100721 : AATAACCCAAGGCGTA-CAAACCAC-GCATAC-ATGTT-ATG-T-AA-CC-A-TGTCA-CTGT-CTATT-CA--C--AAAGCGGTGCAA-GCCCCGCTT-ACCGT
gi|100726 : AATA--ACA-G-CGTA-CAGGCCACCGCCTAC-ATTTCCATG-TTAAACC-A-A-TCA-CTAT-C-ATT-CAGCC--AAAGCG-TGCAAGGCCCCGCCT-ACCGTTTC
gi|100723 : AATA--CCAAT-CGTA-CAGGC-AC-GCCTACCATT-C-ATG-T-AAACC-A-T-T-A-CCAT-C-ATT-CA--C--AAA-CG-TGCA----CCCGCCT-ACCAT
gi|100727 : AAAA--CCAAG-CGTA-CAGGTCAC-GCCTACCGTTT--ATG-T-AAACCAA-A-TCAGCCGC-C-ATT-CA--G--CAAGCG-TGCGG-GCTCCGCCT-ACCGTtt
gi|100724 : AATA--CCAAT-CGTA-CAGCGCAC-GCCTACCA-TTC-ATG-T-AAACC-A-T-TTA-CCAT-C-A-T-CA--C--AAA-CG-TGCA----CCCGCCT-ACCATtt
gi|100729 : AATA--CCAAG-CGTA-CAG-CCAC-G---ACCATTC---TG-T-AAAAC-AAT-CCA-CCATTC-ATT-CA--C--GAAGCG-TGCAA-G-CCCGC-T-ACCGTtt
gi|100728 : AATA--CCA-G-CGTATCAGGACAC-ACCAAACATTTC-ATG-T-AAACCAA-G-TCA-CCAT-C-ATTGCA--CGTAAAGC--TGCAA-GCCCCGCCTAACCGTTTCt
gi|100730 : A--CCAAG-CGTA-CAGGCCAC-GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGG-GCTCCGCCT-ACCGTTTC
gi|100731 : A--CCAAG-CGTA-CAGGCCA--GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGG-GCTCCGCCT-ACCGT
gi|100732 : A--CCAAG-CGTAACAGGCCAC-GTCTACCGTTTC-ATGTT-AAACCAA-T-CCA-CCG--C-A-T-CAC-C--AAAG-G-TGTGG-GCTCCGCCT-ACtt
gi|100735 : A--CAAAG-CGTG-CAAGCCCC-ACCTACCATTTC-gtttc
gi|100733 : tcatta--CCAAG-CGTG-CGGACCAC-GCCTACCATTTA-ATG-T-AAA
gi|100734 : ACC-A-T-TCA-CTAT-C-ATT-CA--C--AAAGCG-TGCAA-GTCCCGACT-ACCGTTTC
gi|100735 : T-C-ATT-AA--C--AAAGCG-TGCAA-GCCCCACCT-ACCATTTC
Alignments
lowQualScore : 33 2 5 1 2 2 2 2 5 666 2 2 2 2 55 33 2 1 2 2
lowQualScore : .. . . . . . . . . ... . . . . .. .. . . . .
lowQualScore : 44 5 0 2 5 5 5 5 0 555 5 4 4 4 66 22 4 2 4 4
consensus : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
Reference ( family-813 ) : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
gi|100718 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCTT-ACCGTATC
gi|100719 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C---AAGCG-TGCAAG-CCCCGCTT-ACCGTATC
gi|100720 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA--TGT-C-ATT-CA--C--AAAGCG-TGCAG---CCCGCTT-ACCGTATC
gi|100721 : AATAACCCAAGGCGTA-CAAACCAC-GCATAC-ATGTT-ATG-T-AA-CC-A-TGTCA-CTGT-CTATT-CA--C--AAAGCGGTGCAAG-CCCCGCTT-ACCGT
gi|100722 : AATA--CCAAG-CGTA-CA--CCAC--CCTACCATTTC-ATG-T-AAACC-A-T-TTA-CCAT-C-AT--CA--C--AAAGCG-TGCAAG-CCCTGCCT-ACCGTTT
gi|100723 : AATA--CCAAT-CGTA-CAGG-CAC-GCCTACCA-TTC-ATG-T-AAACC-A-T-T-A-CCAT-C-ATT-CA--C--AAA-CG-TGCA----CCCGCCT-ACCATTT
gi|100724 : AATA--CCAAT-CGTA-CAGCGCAC-GCCTACCA-TTC-ATG-T-AAACC-A-T-TTA-CCAT-C-A-T-CA--C--AAA-CG-TGCA----CCCGCCT-ACCATTT
gi|100725 : AATG--CCAAT-CGTG-CAGGCCAT-TCCTACTATTCC-ATG-T-AAACC-A-T-TCA-CCAT-C-ATT-CA--T--AAAGCA-TGCAAG-CCCCGCCT-AC
gi|100726 : AATA--ACA-G-CGTA-CAGGCCACCGCCTAC-ATTTCCATG-TTAAACC-A-A-TCA-CTAT-C-ATT-CAGCC--AAAGCG-TGCAAGGCCCCGCCT-ACCGTTTC
gi|100727 : AAAA--CCAAG-CGTA-CAGGTCAC-GCCTACCGTTT--ATG-T-AAACC-A-AATCAGCCGC-C-ATT-CA--G--CAAGCG-TGCGGG-CTCCGCCT-ACCGTTT
gi|100728 : AATA--CCA-G-CGTATCAGGACAC-ACCAAACATTTC-ATG-T-AAACCAA-G-TCA-CCAT-C-ATTGCA--CGTAAAGC--TGCAAG-CCCCGCCTAACCGTTTC
gi|100729 : AATA--CCAAG-CGTA-CAG-CCAC-G---ACCATTC---TG-T-AAAAC-AAT-CCA-CCATTC-ATT-CA--C--GAAGCG-TGCAAG--CCCG-CT-ACCGTT
gi|100730 : A--CCAAG-CGTA-CAGGCCAC-GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGGG-CTCCGCCT-ACCGTTTC
gi|100731 : A--CCAAG-CGTA-CAGGCCA--GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGGG-CTCCGCCT-ACCGTTT
gi|100732 : A--CCAAG-CGTAACAGGCCAC-GTCTACCGTTTC-ATGTT-AAACCAA-T-CCA-CCG--C-A-T-CAC-C--AAAG-G-TGTGGG-CTCCGCCT-A-CGTTTC
gi|100733 : --CCAAG-CGTG-CGGACCAC-GCCTACCATTTA-ATG-T-AAA
gi|100734 : ACC-A-T-TCA-CTAT-C-ATT-CA--C--AAAGCG-TGCAAG-TCCCGACT-ACCGTTTC
gi|100735 : T-C-ATT-AA--C--AAAGCG-TGCAAG-CCCCACCT-ACCATTTC
Alignments
lowQualScore : 33 2 5 1 2 2 2 2 5 666 2 2 2 2 55 33 2 1 2 2
lowQualScore : .. . . . . . . . . ... . . . . .. .. . . . .
lowQualScore : 44 5 0 2 5 5 5 5 0 555 5 4 4 4 66 22 4 2 4 4
consensus : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
Reference ( family-813 ) : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
gi|100718 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCTT-ACCGTATC
gi|100719 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C---AAGCG-TGCAAG-CCCCGCTT-ACCGTATC
gi|100720 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA--TGT-C-ATT-CA--C--AAAGCG-TGCAG---CCCGCTT-ACCGTATC
gi|100721 : AATAACCCAAGGCGTA-CAAACCAC-GCATAC-ATGTT-ATG-T-AA-CC-A-TGTCA-CTGT-CTATT-CA--C--AAAGCGGTGCAAG-CCCCGCTT-ACCGT
gi|100722 : AATA--CCAAG-CGTA-CA--CCAC--CCTACCATTTC-ATG-T-AAACC-A-T-TTA-CCAT-C-AT--CA--C--AAAGCG-TGCAAG-CCCTGCCT-ACCGTTT
gi|100723 : AATA--CCAAT-CGTA-CAGG-CAC-GCCTACCA-TTC-ATG-T-AAACC-A-T-T-A-CCAT-C-ATT-CA--C--AAA-CG-TGCA----CCCGCCT-ACCATTT
gi|100724 : AATA--CCAAT-CGTA-CAGCGCAC-GCCTACCA-TTC-ATG-T-AAACC-A-T-TTA-CCAT-C-A-T-CA--C--AAA-CG-TGCA----CCCGCCT-ACCATTT
gi|100725 : AATG--CCAAT-CGTG-CAGGCCAT-TCCTACTATTCC-ATG-T-AAACC-A-T-TCA-CCAT-C-ATT-CA--T--AAAGCA-TGCAAG-CCCCGCCT-AC
gi|100726 : AATA--ACA-G-CGTA-CAGGCCACCGCCTAC-ATTTCCATG-TTAAACC-A-A-TCA-CTAT-C-ATT-CAGCC--AAAGCG-TGCAAGGCCCCGCCT-ACCGTTTC
gi|100727 : AAAA--CCAAG-CGTA-CAGGTCAC-GCCTACCGTTT--ATG-T-AAACC-A-AATCAGCCGC-C-ATT-CA--G--CAAGCG-TGCGGG-CTCCGCCT-ACCGTTT
gi|100728 : AATA--CCA-G-CGTATCAGGACAC-ACCAAACATTTC-ATG-T-AAACCAA-G-TCA-CCAT-C-ATTGCA--CGTAAAGC--TGCAAG-CCCCGCCTAACCGTTTC
gi|100729 : AATA--CCAAG-CGTA-CAG-CCAC-G---ACCATTC---TG-T-AAAAC-AAT-CCA-CCATTC-ATT-CA--C--GAAGCG-TGCAAG--CCCG-CT-ACCGTT
gi|100730 : A--CCAAG-CGTA-CAGGCCAC-GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGGG-CTCCGCCT-ACCGTTTC
gi|100731 : A--CCAAG-CGTA-CAGGCCA--GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGGG-CTCCGCCT-ACCGTTT
gi|100732 : A--CCAAG-CGTAACAGGCCAC-GTCTACCGTTTC-ATGTT-AAACCAA-T-CCA-CCG--C-A-T-CAC-C--AAAG-G-TGTGGG-CTCCGCCT-A-CGTTTC
gi|100733 : --CCAAG-CGTG-CGGACCAC-GCCTACCATTTA-ATG-T-AAA
gi|100734 : ACC-A-T-TCA-CTAT-C-ATT-CA--C--AAAGCG-TGCAAG-TCCCGACT-ACCGTTTC
gi|100735 : T-C-ATT-AA--C--AAAGCG-TGCAAG-CCCCACCT-ACCATTTC
blockSeqs : AC G T A C C T T A TG G T T G GC GT G A G A
blockSeqs : . . A A . . . . A AA . . . . C . . G . .
blockSeqs : . . . A . . . . . AT . . . . . . . A . .
blockSeqs : . . . G . . . . . T . . . . . . . A . .
blockSeqs : . . . C . . . . . T . . . . . . . A . .
blockSeqs : . . . G . . . . . T . . . . . . . A . .
blockSeqs : . . . G . . . . . T . . . . . . . G . .
blockSeqs : . . . G . . . . . T . . . . . . . A . .
blockSeqs : . . . G . . . . . T . . . . . . . A . .
blockSeqs : . . . G . . . . . A . . . . . . . G . .
blockSeqs : . . . G . . . . . G . . . . . . . G . .
blockSeqs : . . . G . . . . . A . . . . . . . G . .
blockSeqs : . . . A . . . . . A . . . . . . . A . .
blockSeqs : . . . . . . . . . T . . . . . . . A . .
blockSeqs : . . . . . . . . . T . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
finalCons : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
Alignments
lowQualScore : 33 2 5 1 2 2 2 2 5 666 2 2 2 2 55 33 2 1 2 2
lowQualScore : .. . . . . . . . . ... . . . . .. .. . . . .
lowQualScore : 44 5 0 2 5 5 5 5 0 555 5 4 4 4 66 22 4 2 4 4
consensus : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
Reference ( family-813 ) : AATA--CCAAG-CGTA-CAGGCCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CCGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCCT-ACCGTTTC
gi|100718 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C--AAAGCG-TGCAAG-CCCCGCTT-ACCGTATC
gi|100719 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA-CTGT-C-ATT-CA--C---AAGCG-TGCAAG-CCCCGCTT-ACCGTATC
gi|100720 : AATA--CCAAG-CGTA-CAGACCAC-GCCTACCATTTC-ATG-T-AAACC-A-T-TCA--TGT-C-ATT-CA--C--AAAGCG-TGCAG---CCCGCTT-ACCGTATC
gi|100721 : AATAACCCAAGGCGTA-CAAACCAC-GCATAC-ATGTT-ATG-T-AA-CC-A-TGTCA-CTGT-CTATT-CA--C--AAAGCGGTGCAAG-CCCCGCTT-ACCGT
gi|100722 : AATA--CCAAG-CGTA-CA--CCAC--CCTACCATTTC-ATG-T-AAACC-A-T-TTA-CCAT-C-AT--CA--C--AAAGCG-TGCAAG-CCCTGCCT-ACCGTTT
gi|100723 : AATA--CCAAT-CGTA-CAGG-CAC-GCCTACCA-TTC-ATG-T-AAACC-A-T-T-A-CCAT-C-ATT-CA--C--AAA-CG-TGCA----CCCGCCT-ACCATTT
gi|100724 : AATA--CCAAT-CGTA-CAGCGCAC-GCCTACCA-TTC-ATG-T-AAACC-A-T-TTA-CCAT-C-A-T-CA--C--AAA-CG-TGCA----CCCGCCT-ACCATTT
gi|100725 : AATG--CCAAT-CGTG-CAGGCCAT-TCCTACTATTCC-ATG-T-AAACC-A-T-TCA-CCAT-C-ATT-CA--T--AAAGCA-TGCAAG-CCCCGCCT-AC
gi|100726 : AATA--ACA-G-CGTA-CAGGCCACCGCCTAC-ATTTCCATG-TTAAACC-A-A-TCA-CTAT-C-ATT-CAGCC--AAAGCG-TGCAAGGCCCCGCCT-ACCGTTTC
gi|100727 : AAAA--CCAAG-CGTA-CAGGTCAC-GCCTACCGTTT--ATG-T-AAACC-A-AATCAGCCGC-C-ATT-CA--G--CAAGCG-TGCGGG-CTCCGCCT-ACCGTTT
gi|100728 : AATA--CCA-G-CGTATCAGGACAC-ACCAAACATTTC-ATG-T-AAACCAA-G-TCA-CCAT-C-ATTGCA--CGTAAAGC--TGCAAG-CCCCGCCTAACCGTTTC
gi|100729 : AATA--CCAAG-CGTA-CAG-CCAC-G---ACCATTC---TG-T-AAAAC-AAT-CCA-CCATTC-ATT-CA--C--GAAGCG-TGCAAG--CCCG-CT-ACCGTT
gi|100730 : A--CCAAG-CGTA-CAGGCCAC-GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGGG-CTCCGCCT-ACCGTTTC
gi|100731 : A--CCAAG-CGTA-CAGGCCA--GCCTACCGTTTC-ATG-T-AAACC-A-A-TCA-CCGC-C-ATT-CA--C--AAAGCG-TGCGGG-CTCCGCCT-ACCGTTT
gi|100732 : A--CCAAG-CGTAACAGGCCAC-GTCTACCGTTTC-ATGTT-AAACCAA-T-CCA-CCG--C-A-T-CAC-C--AAAG-G-TGTGGG-CTCCGCCT-A-CGTTTC
gi|100733 : --CCAAG-CGTG-CGGACCAC-GCCTACCATTTA-ATG-T-AAA
gi|100734 : ACC-A-T-TCA-CTAT-C-ATT-CA--C--AAAGCG-TGCAAG-TCCCGACT-ACCGTTTC
gi|100735 : T-C-ATT-AA--C--AAAGCG-TGCAAG-CCCCACCT-ACCATTTC